mirror of https://github.com/msberends/AMR.git
53 lines
2.7 KiB
R
Executable File
53 lines
2.7 KiB
R
Executable File
# ==================================================================== #
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# TITLE: #
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# AMR: An R Package for Working with Antimicrobial Resistance Data #
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# #
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# SOURCE CODE: #
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# https://github.com/msberends/AMR #
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# #
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# PLEASE CITE THIS SOFTWARE AS: #
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# Berends MS, Luz CF, Friedrich AW, Sinha BNM, Albers CJ, Glasner C #
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# (2022). AMR: An R Package for Working with Antimicrobial Resistance #
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# Data. Journal of Statistical Software, 104(3), 1-31. #
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# https://doi.org/10.18637/jss.v104.i03 #
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# #
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# Developed at the University of Groningen and the University Medical #
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# Center Groningen in The Netherlands, in collaboration with many #
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# colleagues from around the world, see our website. #
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# #
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# This R package is free software; you can freely use and distribute #
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# it for both personal and commercial purposes under the terms of the #
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# GNU General Public License version 2.0 (GNU GPL-2), as published by #
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# the Free Software Foundation. #
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# We created this package for both routine data analysis and academic #
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# research and it was publicly released in the hope that it will be #
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# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. #
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# #
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# Visit our website for the full manual and a complete tutorial about #
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# how to conduct AMR data analysis: https://msberends.github.io/AMR/ #
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# ==================================================================== #
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#' @rdname proportion
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#' @export
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sir_df <- function(data,
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translate_ab = "name",
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language = get_AMR_locale(),
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minimum = 30,
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as_percent = FALSE,
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combine_SI = TRUE,
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confidence_level = 0.95) {
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tryCatch(
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sir_calc_df(
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type = "both",
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data = data,
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translate_ab = translate_ab,
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language = language,
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minimum = minimum,
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as_percent = as_percent,
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combine_SI = combine_SI,
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confidence_level = confidence_level
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),
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error = function(e) stop_(gsub("in sir_calc_df(): ", "", e$message, fixed = TRUE), call = -5)
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)
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}
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