mirror of https://github.com/msberends/AMR.git
46 lines
2.5 KiB
R
46 lines
2.5 KiB
R
# ==================================================================== #
|
|
# TITLE #
|
|
# Antimicrobial Resistance (AMR) Data Analysis for R #
|
|
# #
|
|
# SOURCE #
|
|
# https://github.com/msberends/AMR #
|
|
# #
|
|
# LICENCE #
|
|
# (c) 2018-2021 Berends MS, Luz CF et al. #
|
|
# Developed at the University of Groningen, the Netherlands, in #
|
|
# collaboration with non-profit organisations Certe Medical #
|
|
# Diagnostics & Advice, and University Medical Center Groningen. #
|
|
# #
|
|
# This R package is free software; you can freely use and distribute #
|
|
# it for both personal and commercial purposes under the terms of the #
|
|
# GNU General Public License version 2.0 (GNU GPL-2), as published by #
|
|
# the Free Software Foundation. #
|
|
# We created this package for both routine data analysis and academic #
|
|
# research and it was publicly released in the hope that it will be #
|
|
# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. #
|
|
# #
|
|
# Visit our website for the full manual and a complete tutorial about #
|
|
# how to conduct AMR data analysis: https://msberends.github.io/AMR/ #
|
|
# ==================================================================== #
|
|
|
|
# test only on GitHub Actions and at home - not on CRAN as tests are lengthy
|
|
if (identical(Sys.getenv("R_RUN_TINYTEST"), "true")) {
|
|
# env var 'R_LIBS_USER' got overwritten during 'R CMD check' in GitHub Actions, so:
|
|
.libPaths(c(Sys.getenv("R_LIBS_USER_GH_ACTIONS"), .libPaths()))
|
|
if (AMR:::pkg_is_available("tinytest")) {
|
|
library(AMR)
|
|
out <- test_package("AMR",
|
|
testdir = ifelse(AMR:::dir.exists("inst/tinytest"),
|
|
"inst/tinytest",
|
|
"tinytest"),
|
|
verbose = 99,
|
|
color = FALSE)
|
|
cat("SUMMARY:\n")
|
|
print(summary(out))
|
|
cat("WARNINGS:\n")
|
|
print(warnings())
|
|
cat(attributes(out)$duration, "\n")
|
|
|
|
}
|
|
}
|