dr. M.S. (Matthijs) Berends cfb55a4c3e (v3.1.0.9017) Add labels_taxonomy() for taxonomic names in italics in plot labels, add type = "plotmath" to italicise_taxonomy(), and only italicise species names after a genus

2026-11-09 20:45:07 +01:00

..

.gitignore

Support for German and Spanish microorganism properties, cleanup

2018-09-04 11:33:30 +02:00

AMR_for_Python.Rmd

(v3.0.1.9076) document Python installation channels and enforce_method in vignette (#296)

2026-06-26 15:03:07 +02:00

AMR_with_tidymodels.Rmd

Add add_if_missing parameter to control NA handling in interpretive rules (#264)

2026-04-21 21:53:43 +02:00

AMR.Rmd

(v3.1.0.9017) Add labels_taxonomy() for taxonomic names in italics in plot labels, add type = "plotmath" to italicise_taxonomy(), and only italicise species names after a genus

2026-11-09 20:45:07 +01:00

benchmarks.Rmd.not

bring back antibiogram(), without deps

2023-02-10 16:18:00 +01:00

datasets.Rmd

implement EUCAST >= 2019 directly from their source files

2026-10-01 14:53:00 +01:00

EUCAST.Rmd

Add add_if_missing parameter to control NA handling in interpretive rules (#264)

2026-04-21 21:53:43 +02:00

PCA.Rmd

(v2.1.1.9268) WISCA vignette, antibiogram sorting, fix translations

2025-05-01 14:45:21 +02:00

welcome_to_AMR.Rmd

Fix copyright link and add MycoBank in vignette

2026-10-23 16:46:27 +03:00

WHONET.Rmd

(v2.1.1.9268) WISCA vignette, antibiogram sorting, fix translations

2025-05-01 14:45:21 +02:00

WISCA.Rmd

Let aggregated analyses follow the guideline for the 'I' category in count_df(), proportion_df(), sir_df(), the plotting functions, antibiogram(), wisca(), and bug_drug_combinations(), deprecate combine_SI in favour of guideline, fix format() on bug_drug_combinations() counting I as resistant, and add a shared section 'Interpretation of SIR'

2026-10-15 09:58:21 +02:00