dr. M.S. (Matthijs) Berends e7077081b9 Set the order of sites in as.sir(), and add the veterinary sites ...

Sites now go from systemic, IV, meningitis, endocarditis, pneumonia and mastitis to UTI, topical and screen. A breakpoint without a site takes the position of "other", as both mean any site that is not listed next to it. A second site breaks a tie on the first one.

The veterinary sites are now fixed codes as well: mastitis (includes Mammary gland), respiratory, metritis, genital, soft tissue and wounds (includes Abscesses). Sites that are part of each other do not contradict.

site = "other" now leaves out every breakpoint limited to an indication, and prefers a breakpoint without a site.

A rebuild of clinical_breakpoints with this order gives the same data, so the same blocking rows stay.

2026-11-02 20:20:05 +01:00

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