AMR/.gitlab-ci.yml

114 lines
5.1 KiB
YAML

# from https://stackoverflow.com/questions/51866926
# and https://github.com/jangorecki/r.gitlab.ci
# and https://docs.gitlab.com/ce/ci/yaml/README.html
# how the Docker+R images work: https://hub.docker.com/r/rocker/r-ver/
stages:
- build
- deploy
R 3:
image: rocker/r-ver:3 # rocker/r-base
stage: build
allow_failure: false
script:
- apt-get update
# install dependencies for package
- apt-get install --yes --no-install-recommends libxml2-dev libssl-dev libcurl4-openssl-dev zlib1g-dev
- R -e 'install.packages(c("devtools", "rlang"))'
- R -e 'devtools::install_deps(dependencies = c("Depends", "Imports", "Suggests"), repos = "https://cran.rstudio.com")'
- R -e 'print(as.data.frame(installed.packages(), row.names = FALSE)[, c("Package", "Version")])'
# remove vignettes folder and get VignetteBuilder field out of DESCRIPTION file
- rm -rf vignettes
- R -e 'd <- read.dcf("DESCRIPTION"); d[, colnames(d) == "VignetteBuilder"] <- NA; write.dcf(d, "DESCRIPTION")'
- R CMD build . --no-build-vignettes --no-manual
- PKG_FILE_NAME=$(ls -1t *.tar.gz | head -n 1)
- R CMD check "${PKG_FILE_NAME}" --no-build-vignettes --no-manual --as-cran
# code coverage
- apt-get install --yes git
- R -e 'covr::codecov(token = "50ffa0aa-fee0-4f8b-a11d-8c7edc6d32ca")'
artifacts:
paths:
- '*.Rcheck/*'
name: '$CI_COMMIT_REF_NAME'
expire_in: '1 month'
R 3.4:
image: rocker/r-ver:3.4 # rocker/r-base
stage: build
allow_failure: true
script:
- apt-get update
# install dependencies for package
- apt-get install --yes --no-install-recommends libxml2-dev libssl-dev libcurl4-openssl-dev zlib1g-dev
- R -e 'install.packages("devtools")'
- R -e 'devtools::install_deps(dependencies = c("Depends", "Imports", "Suggests"))'
- R -e 'print(as.data.frame(installed.packages(), row.names = FALSE)[, c("Package", "Version")])'
# remove vignettes folder and get VignetteBuilder field out of DESCRIPTION file
- rm -rf vignettes
- R -e 'd <- read.dcf("DESCRIPTION"); d[, colnames(d) == "VignetteBuilder"] <- NA; write.dcf(d, "DESCRIPTION")'
- R CMD build . --no-build-vignettes --no-manual
- PKG_FILE_NAME=$(ls -1t *.tar.gz | head -n 1)
- R CMD check "${PKG_FILE_NAME}" --no-build-vignettes --no-manual --as-cran
R 3.5:
image: rocker/r-ver:3.5 # rocker/r-base
stage: build
allow_failure: true
script:
- apt-get update
# install dependencies for package
- apt-get install --yes --no-install-recommends libxml2-dev libssl-dev libcurl4-openssl-dev zlib1g-dev
- R -e 'install.packages("devtools")'
- R -e 'devtools::install_deps(dependencies = c("Depends", "Imports", "Suggests"))'
- R -e 'print(as.data.frame(installed.packages(), row.names = FALSE)[, c("Package", "Version")])'
# remove vignettes folder and get VignetteBuilder field out of DESCRIPTION file
- rm -rf vignettes
- R -e 'd <- read.dcf("DESCRIPTION"); d[, colnames(d) == "VignetteBuilder"] <- NA; write.dcf(d, "DESCRIPTION")'
- R CMD build . --no-build-vignettes --no-manual
- PKG_FILE_NAME=$(ls -1t *.tar.gz | head -n 1)
- R CMD check "${PKG_FILE_NAME}" --no-build-vignettes --no-manual --as-cran
R latest:
image: rocker/r-ver:latest # rocker/r-base
stage: build
allow_failure: true
script:
- apt-get update
# install dependencies for package
- apt-get install --yes --no-install-recommends libxml2-dev libssl-dev libcurl4-openssl-dev zlib1g-dev
- R -e 'install.packages("devtools")'
- R -e 'devtools::install_deps(dependencies = c("Depends", "Imports", "Suggests"))'
- R -e 'print(as.data.frame(installed.packages(), row.names = FALSE)[, c("Package", "Version")])'
# remove vignettes folder and get VignetteBuilder field out of DESCRIPTION file
- rm -rf vignettes
- R -e 'd <- read.dcf("DESCRIPTION"); d[, colnames(d) == "VignetteBuilder"] <- NA; write.dcf(d, "DESCRIPTION")'
- R CMD build . --no-build-vignettes --no-manual
- PKG_FILE_NAME=$(ls -1t *.tar.gz | head -n 1)
- R CMD check "${PKG_FILE_NAME}" --no-build-vignettes --no-manual --as-cran
R devel:
image: rocker/r-ver:devel # rocker/r-base
stage: build
allow_failure: true
script:
- apt-get update
# install dependencies for package
- apt-get install --yes --no-install-recommends libxml2-dev libssl-dev libcurl4-openssl-dev zlib1g-dev
- R -e 'install.packages("devtools")'
- R -e 'devtools::install_deps(dependencies = c("Depends", "Imports", "Suggests"))'
- R -e 'print(as.data.frame(installed.packages(), row.names = FALSE)[, c("Package", "Version")])'
# remove vignettes folder and get VignetteBuilder field out of DESCRIPTION file
- rm -rf vignettes
- R -e 'd <- read.dcf("DESCRIPTION"); d[, colnames(d) == "VignetteBuilder"] <- NA; write.dcf(d, "DESCRIPTION")'
- R CMD build . --no-build-vignettes --no-manual
- PKG_FILE_NAME=$(ls -1t *.tar.gz | head -n 1)
- R CMD check "${PKG_FILE_NAME}" --no-build-vignettes --no-manual --as-cran
coverage_job:
# image: rocker/r-ver:3
stage: deploy
script:
- echo "future packaging part"