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77 lines
2.9 KiB
R
Executable File
77 lines
2.9 KiB
R
Executable File
# ==================================================================== #
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# TITLE #
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# Antimicrobial Resistance (AMR) Analysis #
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# #
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# AUTHORS #
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# Berends MS (m.s.berends@umcg.nl), Luz CF (c.f.luz@umcg.nl) #
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# #
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# LICENCE #
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# This program is free software; you can redistribute it and/or modify #
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# it under the terms of the GNU General Public License version 2.0, #
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# as published by the Free Software Foundation. #
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# #
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# This program is distributed in the hope that it will be useful, #
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# but WITHOUT ANY WARRANTY; without even the implied warranty of #
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the #
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# GNU General Public License for more details. #
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# ==================================================================== #
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globalVariables(c('abname',
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'Antibiotic',
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'Interpretation',
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'Percentage',
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'bind_rows',
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'element_blank',
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'element_line',
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'theme',
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'theme_minimal',
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'antibiotic',
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'antibiotics',
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'atc',
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'bactid',
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'C_chisq_sim',
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'cnt',
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'count',
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'Count',
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'counts',
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'cum_count',
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'cum_percent',
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'date_lab',
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'days_diff',
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'fctlvl',
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'first_isolate_row_index',
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'Freq',
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'fullname',
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'genus',
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'gramstain',
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'item',
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'key_ab',
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'key_ab_lag',
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'key_ab_other',
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'labs',
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'median',
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'mic',
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'MIC',
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'microorganisms',
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'mocode',
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'molis',
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'n',
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'na.omit',
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'observations',
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'official',
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'other_pat_or_mo',
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'Pasted',
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'patient_id',
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'quantile',
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'R',
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'real_first_isolate',
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'S',
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'septic_patients',
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'species',
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'umcg',
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'value',
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'values',
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'View',
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'y',
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'.'))
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