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aa_amr-package.R
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sort sir history
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2023-01-23 15:01:21 +01:00 |
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aa_globals.R
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revert back to pre-antibiogram
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2023-02-09 13:07:39 +01:00 |
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aa_helper_functions.R
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bring back `antibiogram()`, without deps
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2023-02-10 16:18:00 +01:00 |
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aa_helper_pm_functions.R
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revert back to pre-antibiogram
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2023-02-09 13:07:39 +01:00 |
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aa_options.R
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add all options to documentation
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2023-01-23 20:07:57 +01:00 |
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ab.R
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sort sir history
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2023-01-23 15:01:21 +01:00 |
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ab_from_text.R
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documentation, file permissions
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2023-01-19 12:54:53 +01:00 |
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ab_property.R
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bring back `antibiogram()`, without deps
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2023-02-10 16:18:00 +01:00 |
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ab_selectors.R
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revert back to pre-antibiogram
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2023-02-09 13:07:39 +01:00 |
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age.R
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sort sir history
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2023-01-23 15:01:21 +01:00 |
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antibiogram.R
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bring back `antibiogram()`, without deps
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2023-02-10 16:18:00 +01:00 |
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atc_online.R
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revert back to pre-antibiogram
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2023-02-09 13:07:39 +01:00 |
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av.R
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sort sir history
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2023-01-23 15:01:21 +01:00 |
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av_from_text.R
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sort sir history
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2023-01-23 15:01:21 +01:00 |
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av_property.R
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bring back `antibiogram()`, without deps
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2023-02-10 16:18:00 +01:00 |
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availability.R
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Replace RSI with SIR
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2023-01-21 23:47:20 +01:00 |
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bug_drug_combinations.R
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bring back `antibiogram()`, without deps
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2023-02-10 16:18:00 +01:00 |
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count.R
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Replace RSI with SIR
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2023-01-21 23:47:20 +01:00 |
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custom_antimicrobials.R
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add all options to documentation
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2023-01-23 20:07:57 +01:00 |
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custom_eucast_rules.R
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sort sir history
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2023-01-23 15:01:21 +01:00 |
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custom_microorganisms.R
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add all options to documentation
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2023-01-23 20:07:57 +01:00 |
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data.R
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bring back `antibiogram()`, without deps
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2023-02-10 16:18:00 +01:00 |
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disk.R
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revert back to pre-antibiogram
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2023-02-09 13:07:39 +01:00 |
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eucast_rules.R
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revert back to pre-antibiogram
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2023-02-09 13:07:39 +01:00 |
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first_isolate.R
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bring back `antibiogram()`, without deps
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2023-02-10 16:18:00 +01:00 |
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g.test.R
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prelim fix for g.test
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2023-01-30 12:26:48 +01:00 |
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get_episode.R
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bring back `antibiogram()`, without deps
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2023-02-10 16:18:00 +01:00 |
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ggplot_pca.R
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sort sir history
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2023-01-23 15:01:21 +01:00 |
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ggplot_sir.R
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bring back `antibiogram()`, without deps
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2023-02-10 16:18:00 +01:00 |
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guess_ab_col.R
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sort sir history
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2023-01-23 15:01:21 +01:00 |
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italicise_taxonomy.R
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sort sir history
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2023-01-23 15:01:21 +01:00 |
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join_microorganisms.R
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revert back to pre-antibiogram
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2023-02-09 13:07:39 +01:00 |
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key_antimicrobials.R
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Replace RSI with SIR
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2023-01-21 23:47:20 +01:00 |
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kurtosis.R
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support new mo codes
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2022-12-27 15:16:15 +01:00 |
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like.R
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support new mo codes
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2022-12-27 15:16:15 +01:00 |
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mdro.R
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sort sir history
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2023-01-23 15:01:21 +01:00 |
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mean_amr_distance.R
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revert back to pre-antibiogram
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2023-02-09 13:07:39 +01:00 |
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mic.R
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revert back to pre-antibiogram
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2023-02-09 13:07:39 +01:00 |
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mo.R
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bring back `antibiogram()`, without deps
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2023-02-10 16:18:00 +01:00 |
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mo_matching_score.R
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sort sir history
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2023-01-23 15:01:21 +01:00 |
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mo_property.R
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bring back `antibiogram()`, without deps
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2023-02-10 16:18:00 +01:00 |
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mo_source.R
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add all options to documentation
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2023-01-23 20:07:57 +01:00 |
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pca.R
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revert back to pre-antibiogram
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2023-02-09 13:07:39 +01:00 |
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plot.R
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revert back to pre-antibiogram
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2023-02-09 13:07:39 +01:00 |
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proportion.R
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bring back `antibiogram()`, without deps
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2023-02-10 16:18:00 +01:00 |
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random.R
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revert back to pre-antibiogram
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2023-02-09 13:07:39 +01:00 |
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resistance_predict.R
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bring back `antibiogram()`, without deps
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2023-02-10 16:18:00 +01:00 |
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sir.R
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bring back `antibiogram()`, without deps
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2023-02-10 16:18:00 +01:00 |
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sir_calc.R
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bring back `antibiogram()`, without deps
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2023-02-10 16:18:00 +01:00 |
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sir_df.R
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Replace RSI with SIR
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2023-01-21 23:47:20 +01:00 |
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skewness.R
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support new mo codes
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2022-12-27 15:16:15 +01:00 |
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sysdata.rda
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use dplyr where available, new `antibiogram()` for WISCA, fixed Salmonella Typhi/Paratyphi
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2023-02-06 11:57:22 +01:00 |
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translate.R
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bring back `antibiogram()`, without deps
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2023-02-10 16:18:00 +01:00 |
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vctrs.R
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Replace RSI with SIR
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2023-01-21 23:47:20 +01:00 |
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whocc.R
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support new mo codes
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2022-12-27 15:16:15 +01:00 |
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zz_deprecated.R
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documentation, unit tests
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2023-01-24 10:20:27 +01:00 |
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zzz.R
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bring back `antibiogram()`, without deps
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2023-02-10 16:18:00 +01:00 |
dr. M.S. (Matthijs) Berends
bc434db835