mirror of https://github.com/msberends/AMR.git
32 lines
874 B
R
Executable File
32 lines
874 B
R
Executable File
% Generated by roxygen2: do not edit by hand
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% Please edit documentation in R/classes.R
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\name{as.rsi}
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\alias{as.rsi}
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\alias{is.rsi}
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\title{Class 'rsi'}
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\usage{
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as.rsi(x)
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is.rsi(x)
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}
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\arguments{
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\item{x}{vector}
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}
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\value{
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Ordered factor with new class \code{rsi} and new attributes \code{package} and \code{package.version}
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}
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\description{
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This transforms a vector to a new class \code{rsi}, which is an ordered factor with levels \code{S < I < R}. Invalid antimicrobial interpretations will be translated as \code{NA} with a warning.
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}
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\examples{
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rsi_data <- as.rsi(c(rep("S", 474), rep("I", 36), rep("R", 370)))
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rsi_data <- as.rsi(c(rep("S", 474), rep("I", 36), rep("R", 370), "A", "B", "C"))
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is.rsi(rsi_data)
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# this can also coerce combined MIC/RSI values:
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as.rsi("<= 0.002; R") # will return R
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plot(rsi_data) # for percentages
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barplot(rsi_data) # for frequencies
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}
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