dr. M.S. (Matthijs) Berends 07efc292bc (v2.1.1.9163) cleanup

2025-02-27 14:04:29 +01:00

..

figures

website update

2022-12-11 11:44:29 +01:00

ab_from_text.Rd

(v2.1.1.9126) implemented WISCA! Also added top_n_microorganisms() and fixed Python wrapper

2025-01-26 23:01:17 +01:00

ab_property.Rd

(v2.1.1.9126) implemented WISCA! Also added top_n_microorganisms() and fixed Python wrapper

2025-01-26 23:01:17 +01:00

add_custom_antimicrobials.Rd

(v2.1.1.9160) cleanup

2025-02-26 20:28:33 +01:00

add_custom_microorganisms.Rd

(v2.1.1.9079) fix for uti in as.sir()

2024-09-24 15:34:12 +02:00

age_groups.Rd

make rsi work in more cases, documentation update

2023-02-22 14:38:57 +01:00

age.Rd

make rsi work in more cases, documentation update

2023-02-22 14:38:57 +01:00

AMR-deprecated.Rd

(v2.1.1.9125) replace 'antibiotic selectors' with 'antimicrobial selectors'

2025-01-17 12:09:39 +01:00

AMR-options.Rd

(v2.1.1.9078) 12 new formatting formats for antibiogram(), prepare for Bayesian WISCA

2024-09-22 11:45:51 +02:00

AMR.Rd

(v2.1.1.9123) add EFF code to antibiotics data set

2025-01-15 16:14:09 +01:00

antibiogram.Rd

(v2.1.1.9163) cleanup

2025-02-27 14:04:29 +01:00

antibiotics.Rd

(v2.1.1.9141) new AMR selectors, eucast overwrite arg

2025-02-07 18:01:22 +01:00

antimicrobial_selectors.Rd

(v2.1.1.9163) cleanup

2025-02-27 14:04:29 +01:00

as.ab.Rd

(v2.1.1.9159) new approach as.ab()

2025-02-26 19:23:54 +01:00

as.av.Rd

(v2.1.1.9081) HUGE microorganisms update for fungi!

2024-09-29 22:17:56 +02:00

as.disk.Rd

(v2.1.1.9095) Python support

2024-10-15 17:12:55 +02:00

as.mic.Rd

(v2.1.1.9155) new mic_p50() and mic_p90() - updated AMR intro

2025-02-23 11:18:08 +01:00

as.mo.Rd

(v2.1.1.9141) new AMR selectors, eucast overwrite arg

2025-02-07 18:01:22 +01:00

as.sir.Rd

(v2.1.1.9163) cleanup

2025-02-27 14:04:29 +01:00

atc_online.Rd

(v2.1.1.9126) implemented WISCA! Also added top_n_microorganisms() and fixed Python wrapper

2025-01-26 23:01:17 +01:00

av_from_text.Rd

(v2.1.1.9126) implemented WISCA! Also added top_n_microorganisms() and fixed Python wrapper

2025-01-26 23:01:17 +01:00

av_property.Rd

(v2.1.1.9081) HUGE microorganisms update for fungi!

2024-09-29 22:17:56 +02:00

availability.Rd

make rsi work in more cases, documentation update

2023-02-22 14:38:57 +01:00

bug_drug_combinations.Rd

(v2.1.1.9129) unit test fix

2025-01-27 16:17:03 +01:00

clinical_breakpoints.Rd

(v2.1.1.9081) HUGE microorganisms update for fungi!

2024-09-29 22:17:56 +02:00

count.Rd

(v2.1.1.9140) WISCA fix

2025-02-05 20:48:35 +01:00

custom_eucast_rules.Rd

(v2.1.1.9163) cleanup

2025-02-27 14:04:29 +01:00

dosage.Rd

(v2.1.1.9081) HUGE microorganisms update for fungi!

2024-09-29 22:17:56 +02:00

eucast_rules.Rd

(v2.1.1.9141) new AMR selectors, eucast overwrite arg

2025-02-07 18:01:22 +01:00

example_isolates_unclean.Rd

(v2.1.1.9081) HUGE microorganisms update for fungi!

2024-09-29 22:17:56 +02:00

example_isolates.Rd

(v2.1.1.9081) HUGE microorganisms update for fungi!

2024-09-29 22:17:56 +02:00

export_ncbi_biosample.Rd

(v2.1.1.9126) implemented WISCA! Also added top_n_microorganisms() and fixed Python wrapper

2025-01-26 23:01:17 +01:00

first_isolate.Rd

(v2.1.1.9141) new AMR selectors, eucast overwrite arg

2025-02-07 18:01:22 +01:00

g.test.Rd

new SDD and N for as.sir()

2024-05-20 15:27:04 +02:00

get_episode.Rd

update NEWS

2023-03-11 14:43:31 +01:00

ggplot_pca.Rd

(v2.1.1.9126) implemented WISCA! Also added top_n_microorganisms() and fixed Python wrapper

2025-01-26 23:01:17 +01:00

ggplot_sir.Rd

(v2.1.1.9163) cleanup

2025-02-27 14:04:29 +01:00

guess_ab_col.Rd

(v2.1.1.9126) implemented WISCA! Also added top_n_microorganisms() and fixed Python wrapper

2025-01-26 23:01:17 +01:00

intrinsic_resistant.Rd

(v2.1.1.9081) HUGE microorganisms update for fungi!

2024-09-29 22:17:56 +02:00

italicise_taxonomy.Rd

Added support for 'html' in italicize_taxonomy() (#134)

2024-02-13 13:47:07 +01:00

join.Rd

documentation, unit tests

2023-01-24 10:20:27 +01:00

key_antimicrobials.Rd

(v2.1.1.9126) implemented WISCA! Also added top_n_microorganisms() and fixed Python wrapper

2025-01-26 23:01:17 +01:00

kurtosis.Rd

documentation, unit tests

2023-01-24 10:20:27 +01:00

like.Rd

fix documentation

2023-03-16 08:55:37 +01:00

mdro.Rd

(v2.1.1.9141) new AMR selectors, eucast overwrite arg

2025-02-07 18:01:22 +01:00

mean_amr_distance.Rd

(v2.1.1.9125) replace 'antibiotic selectors' with 'antimicrobial selectors'

2025-01-17 12:09:39 +01:00

microorganisms.codes.Rd

(v2.1.1.9081) HUGE microorganisms update for fungi!

2024-09-29 22:17:56 +02:00

microorganisms.groups.Rd

(v2.1.1.9081) HUGE microorganisms update for fungi!

2024-09-29 22:17:56 +02:00

microorganisms.Rd

(v2.1.1.9141) new AMR selectors, eucast overwrite arg

2025-02-07 18:01:22 +01:00

mo_matching_score.Rd

(v2.1.1.9133) update math formulae

2025-01-27 22:43:35 +01:00

mo_property.Rd

(v2.1.1.9163) cleanup

2025-02-27 14:04:29 +01:00

mo_source.Rd

(v2.1.1.9126) implemented WISCA! Also added top_n_microorganisms() and fixed Python wrapper

2025-01-26 23:01:17 +01:00

pca.Rd

(v2.1.1.9126) implemented WISCA! Also added top_n_microorganisms() and fixed Python wrapper

2025-01-26 23:01:17 +01:00

plot.Rd

(v2.1.1.9163) cleanup

2025-02-27 14:04:29 +01:00

proportion.Rd

(v2.1.1.9140) WISCA fix

2025-02-05 20:48:35 +01:00

random.Rd

(v2.1.1.9049) new 2024 breakpoints, add AMO, set NI instead of N

2024-06-14 22:39:01 +02:00

resistance_predict.Rd

(v2.1.1.9126) implemented WISCA! Also added top_n_microorganisms() and fixed Python wrapper

2025-01-26 23:01:17 +01:00

skewness.Rd

documentation, unit tests

2023-01-24 10:20:27 +01:00

top_n_microorganisms.Rd

(v2.1.1.9163) cleanup

2025-02-27 14:04:29 +01:00

translate.Rd

(v2.1.1.9079) fix for uti in as.sir()

2024-09-24 15:34:12 +02:00

WHOCC.Rd

new Norwegian link

2024-03-03 23:24:57 +01:00

WHONET.Rd

(v2.1.1.9081) HUGE microorganisms update for fungi!

2024-09-29 22:17:56 +02:00