AMR/tests/testthat/test-ab_from_text.R

43 lines
2.4 KiB
R

# ==================================================================== #
# TITLE #
# Antimicrobial Resistance (AMR) Analysis #
# #
# SOURCE #
# https://github.com/msberends/AMR #
# #
# LICENCE #
# (c) 2018-2020 Berends MS, Luz CF et al. #
# #
# This R package is free software; you can freely use and distribute #
# it for both personal and commercial purposes under the terms of the #
# GNU General Public License version 2.0 (GNU GPL-2), as published by #
# the Free Software Foundation. #
# #
# We created this package for both routine data analysis and academic #
# research and it was publicly released in the hope that it will be #
# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. #
# Visit our website for more info: https://msberends.github.io/AMR. #
# ==================================================================== #
context("ab_from_text.R")
test_that("ab_from_text works", {
skip_on_cran()
expect_identical(ab_from_text("28/03/2020 regular amoxicilliin 500mg po tds")[[1]],
as.ab("Amoxicillin"))
expect_identical(ab_from_text("28/03/2020 regular amoxicilliin 500mg po tds", thorough_search = TRUE)[[1]],
as.ab("Amoxicillin"))
expect_identical(ab_from_text("28/03/2020 regular amoxicilliin 500mg po tds", thorough_search = FALSE)[[1]],
as.ab("Amoxicillin"))
expect_identical(ab_from_text("28/03/2020 regular amoxicilliin 500mg po tds", translate_ab = TRUE)[[1]],
"Amoxicillin")
expect_identical(ab_from_text("administered amoxi/clav and cipro", collapse = ", ")[[1]],
"AMC, CIP")
expect_identical(ab_from_text("28/03/2020 regular amoxicilliin 500mg po tds", type = "dose")[[1]],
500)
expect_identical(ab_from_text("28/03/2020 regular amoxicilliin 500mg po tds", type = "admin")[[1]],
"oral")
})