1
0
mirror of https://github.com/msberends/AMR.git synced 2024-12-26 20:06:11 +01:00
AMR/man/microorganisms.umcg.Rd
dr. M.S. (Matthijs) Berends 53464ff1c8
- For functions first_isolate, EUCAST_rules the antibiotic column names are case-insensitive
- Functions `first_isolate`, `EUCAST_rules` and `rsi_predict` supports tidyverse-like evaluation of parameters (no need to quote columns them anymore)
- Functions `clipboard_import` and `clipboard_export` as helper functions to quickly copy and paste from/to software like Excel and SPSS
- Renamed dataset `bactlist` to `microorganisms`
2018-03-23 14:46:02 +01:00

25 lines
967 B
R

% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/data.R
\docType{data}
\name{microorganisms.umcg}
\alias{microorganisms.umcg}
\title{Translation table for UMCG with ~1100 microorganisms}
\format{A data.frame with 1090 observations and 2 variables:
\describe{
\item{\code{mocode}}{Code of microorganism according to UMCG MMB}
\item{\code{bactid}}{Code of microorganism in \code{\link{microorganisms}}}
}}
\source{
MOLIS (LIS of Certe) - \url{https://www.certe.nl} \cr \cr GLIMS (LIS of UMCG) - \url{https://www.umcg.nl}
}
\usage{
microorganisms.umcg
}
\description{
A dataset containing all bacteria codes of UMCG MMB. These codes can be joined to data with an ID from \code{\link{microorganisms}$bactid} (using \code{\link{left_join_microorganisms}}). GLIMS codes can also be translated to valid \code{bactid}'s with \code{\link{guess_bactid}}.
}
\seealso{
\code{\link{guess_bactid}} \code{\link{microorganisms}}
}
\keyword{datasets}