mirror of
https://github.com/msberends/AMR.git
synced 2024-12-26 06:46:11 +01:00
40 lines
2.4 KiB
R
40 lines
2.4 KiB
R
# ==================================================================== #
|
|
# TITLE #
|
|
# Antimicrobial Resistance (AMR) Data Analysis for R #
|
|
# #
|
|
# SOURCE #
|
|
# https://github.com/msberends/AMR #
|
|
# #
|
|
# LICENCE #
|
|
# (c) 2018-2021 Berends MS, Luz CF et al. #
|
|
# Developed at the University of Groningen, the Netherlands, in #
|
|
# collaboration with non-profit organisations Certe Medical #
|
|
# Diagnostics & Advice, and University Medical Center Groningen. #
|
|
# #
|
|
# This R package is free software; you can freely use and distribute #
|
|
# it for both personal and commercial purposes under the terms of the #
|
|
# GNU General Public License version 2.0 (GNU GPL-2), as published by #
|
|
# the Free Software Foundation. #
|
|
# We created this package for both routine data analysis and academic #
|
|
# research and it was publicly released in the hope that it will be #
|
|
# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. #
|
|
# #
|
|
# Visit our website for the full manual and a complete tutorial about #
|
|
# how to conduct AMR data analysis: https://msberends.github.io/AMR/ #
|
|
# ==================================================================== #
|
|
|
|
expect_identical(suppressWarnings(p_symbol(c(0.001, 0.01, 0.05, 0.1, 1, NA, 3))),
|
|
c("***", "**", "*", ".", " ", NA, NA))
|
|
|
|
expect_warning(key_antibiotics(example_isolates))
|
|
expect_identical(suppressWarnings(key_antibiotics(example_isolates)),
|
|
key_antimicrobials(example_isolates, antifungal = NULL))
|
|
|
|
expect_warning(key_antibiotics_equal("S", "S"))
|
|
expect_identical(suppressWarnings(key_antibiotics_equal("S", "S")),
|
|
antimicrobials_equal("S", "S", type = "keyantimicrobials"))
|
|
|
|
expect_warning(filter_first_weighted_isolate(example_isolates))
|
|
expect_identical(suppressWarnings(filter_first_weighted_isolate(example_isolates)),
|
|
filter_first_isolate(example_isolates))
|