mirror of https://github.com/msberends/AMR.git
68 lines
2.6 KiB
R
Executable File
68 lines
2.6 KiB
R
Executable File
# ==================================================================== #
|
|
# TITLE #
|
|
# Antimicrobial Resistance (AMR) Analysis #
|
|
# #
|
|
# AUTHORS #
|
|
# Berends MS (m.s.berends@umcg.nl), Luz CF (c.f.luz@umcg.nl) #
|
|
# #
|
|
# LICENCE #
|
|
# This program is free software; you can redistribute it and/or modify #
|
|
# it under the terms of the GNU General Public License version 2.0, #
|
|
# as published by the Free Software Foundation. #
|
|
# #
|
|
# This program is distributed in the hope that it will be useful, #
|
|
# but WITHOUT ANY WARRANTY; without even the implied warranty of #
|
|
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the #
|
|
# GNU General Public License for more details. #
|
|
# ==================================================================== #
|
|
|
|
globalVariables(c('abname',
|
|
'antibiotic',
|
|
'antibiotics',
|
|
'atc',
|
|
'bactid',
|
|
'C_chisq_sim',
|
|
'cnt',
|
|
'count',
|
|
'counts',
|
|
'cum_count',
|
|
'cum_percent',
|
|
'date_lab',
|
|
'days_diff',
|
|
'fctlvl',
|
|
'first_isolate_row_index',
|
|
'Freq',
|
|
'fullname',
|
|
'genus',
|
|
'gramstain',
|
|
'item',
|
|
'key_ab',
|
|
'key_ab_lag',
|
|
'key_ab_other',
|
|
'labs',
|
|
'median',
|
|
'mic',
|
|
'MIC',
|
|
'microorganisms',
|
|
'mocode',
|
|
'molis',
|
|
'n',
|
|
'na.omit',
|
|
'observations',
|
|
'official',
|
|
'other_pat_or_mo',
|
|
'Pasted',
|
|
'patient_id',
|
|
'quantile',
|
|
'R',
|
|
'real_first_isolate',
|
|
'S',
|
|
'septic_patients',
|
|
'species',
|
|
'umcg',
|
|
'value',
|
|
'values',
|
|
'View',
|
|
'y',
|
|
'.'))
|