mirror of https://github.com/msberends/AMR.git
102 lines
3.2 KiB
R
102 lines
3.2 KiB
R
# ==================================================================== #
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# TITLE #
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# AMR: An R Package for Working with Antimicrobial Resistance Data #
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# #
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# SOURCE #
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# https://github.com/msberends/AMR #
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# #
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# CITE AS #
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# Berends MS, Luz CF, Friedrich AW, Sinha BNM, Albers CJ, Glasner C #
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# (2022). AMR: An R Package for Working with Antimicrobial Resistance #
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# Data. Journal of Statistical Software, 104(3), 1-31. #
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# doi:10.18637/jss.v104.i03 #
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# #
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# Developed at the University of Groningen, the Netherlands, in #
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# collaboration with non-profit organisations Certe Medical #
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# Diagnostics & Advice, and University Medical Center Groningen. #
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# #
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# This R package is free software; you can freely use and distribute #
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# it for both personal and commercial purposes under the terms of the #
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# GNU General Public License version 2.0 (GNU GPL-2), as published by #
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# the Free Software Foundation. #
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# We created this package for both routine data analysis and academic #
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# research and it was publicly released in the hope that it will be #
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# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. #
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# #
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# Visit our website for the full manual and a complete tutorial about #
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# how to conduct AMR data analysis: https://msberends.github.io/AMR/ #
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# ==================================================================== #
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expect_equal(
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age(
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x = c("1980-01-01", "1985-01-01", "1990-01-01"),
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reference = "2019-01-01"
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),
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c(39, 34, 29)
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)
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expect_equal(age(
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x = c("2019-01-01", "2019-04-01", "2019-07-01"),
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reference = "2019-09-01",
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exact = TRUE
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),
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c(0.6656393, 0.4191781, 0.1698630),
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tolerance = 0.001
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)
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expect_error(age(
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x = c("1980-01-01", "1985-01-01", "1990-01-01"),
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reference = c("2019-01-01", "2019-01-01")
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))
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expect_warning(age(
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x = c("1980-01-01", "1985-01-01", "1990-01-01"),
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reference = "1975-01-01"
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))
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expect_warning(age(
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x = c("1800-01-01", "1805-01-01", "1810-01-01"),
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reference = "2019-01-01"
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))
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expect_equal(
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length(age(x = c("2019-01-01", NA), na.rm = TRUE)),
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1
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)
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ages <- c(3, 8, 16, 54, 31, 76, 101, 43, 21)
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expect_equal(
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length(unique(age_groups(ages, 50))),
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2
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)
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expect_equal(
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length(unique(age_groups(ages, c(50, 60)))),
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3
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)
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expect_identical(
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class(age_groups(ages, "child")),
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c("ordered", "factor")
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)
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expect_identical(
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class(age_groups(ages, "elderly")),
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c("ordered", "factor")
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)
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expect_identical(
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class(age_groups(ages, "tens")),
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c("ordered", "factor")
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)
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expect_identical(
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class(age_groups(ages, "fives")),
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c("ordered", "factor")
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)
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expect_equal(
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length(age_groups(c(10, 20, 30, NA), na.rm = TRUE)),
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3
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)
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