AMR/man
dr. M.S. (Matthijs) Berends 3396236eef unit test fixes 2023-02-13 16:56:25 +01:00
..
figures website update 2022-12-11 11:44:29 +01:00
AMR-deprecated.Rd documentation, unit tests 2023-01-24 10:20:27 +01:00
AMR-options.Rd add include_screening to `as.sir()` 2023-02-12 15:09:54 +01:00
AMR.Rd bring back `antibiogram()`, without deps 2023-02-10 16:18:00 +01:00
WHOCC.Rd documentation, unit tests 2023-01-24 10:20:27 +01:00
WHONET.Rd documentation, unit tests 2023-01-24 10:20:27 +01:00
ab_from_text.Rd documentation, unit tests 2023-01-24 10:20:27 +01:00
ab_property.Rd revert back to pre-antibiogram 2023-02-09 13:07:39 +01:00
add_custom_antimicrobials.Rd documentation, unit tests 2023-01-24 10:20:27 +01:00
add_custom_microorganisms.Rd documentation, unit tests 2023-01-24 10:20:27 +01:00
age.Rd documentation, unit tests 2023-01-24 10:20:27 +01:00
age_groups.Rd documentation, unit tests 2023-01-24 10:20:27 +01:00
antibiogram.Rd unit test fixes 2023-02-13 16:56:25 +01:00
antibiotic_class_selectors.Rd fix first isolate 2023-02-10 13:13:17 +01:00
antibiotics.Rd documentation, unit tests 2023-01-24 10:20:27 +01:00
as.ab.Rd documentation, unit tests 2023-01-24 10:20:27 +01:00
as.av.Rd documentation, unit tests 2023-01-24 10:20:27 +01:00
as.disk.Rd documentation, unit tests 2023-01-24 10:20:27 +01:00
as.mic.Rd documentation, unit tests 2023-01-24 10:20:27 +01:00
as.mo.Rd documentation, unit tests 2023-01-24 10:20:27 +01:00
as.sir.Rd add include_screening to `as.sir()` 2023-02-12 15:09:54 +01:00
atc_online.Rd documentation, unit tests 2023-01-24 10:20:27 +01:00
av_from_text.Rd documentation, unit tests 2023-01-24 10:20:27 +01:00
av_property.Rd documentation, unit tests 2023-01-24 10:20:27 +01:00
availability.Rd documentation, unit tests 2023-01-24 10:20:27 +01:00
bug_drug_combinations.Rd bring back `antibiogram()`, without deps 2023-02-10 16:18:00 +01:00
clinical_breakpoints.Rd bring back `antibiogram()`, without deps 2023-02-10 16:18:00 +01:00
count.Rd documentation, unit tests 2023-01-24 10:20:27 +01:00
custom_eucast_rules.Rd documentation, unit tests 2023-01-24 10:20:27 +01:00
dosage.Rd documentation, unit tests 2023-01-24 10:20:27 +01:00
eucast_rules.Rd fix first isolate 2023-02-10 13:13:17 +01:00
example_isolates.Rd bring back `antibiogram()`, without deps 2023-02-10 16:18:00 +01:00
example_isolates_unclean.Rd bring back `antibiogram()`, without deps 2023-02-10 16:18:00 +01:00
first_isolate.Rd fix first isolate 2023-02-10 13:13:17 +01:00
g.test.Rd documentation, unit tests 2023-01-24 10:20:27 +01:00
get_episode.Rd unit tests 2023-02-12 17:10:48 +01:00
ggplot_pca.Rd documentation, unit tests 2023-01-24 10:20:27 +01:00
ggplot_sir.Rd add all options to documentation 2023-01-23 20:07:57 +01:00
guess_ab_col.Rd documentation, unit tests 2023-01-24 10:20:27 +01:00
intrinsic_resistant.Rd bring back `antibiogram()`, without deps 2023-02-10 16:18:00 +01:00
italicise_taxonomy.Rd documentation, unit tests 2023-01-24 10:20:27 +01:00
join.Rd documentation, unit tests 2023-01-24 10:20:27 +01:00
key_antimicrobials.Rd fix first isolate 2023-02-10 13:13:17 +01:00
kurtosis.Rd documentation, unit tests 2023-01-24 10:20:27 +01:00
like.Rd documentation, unit tests 2023-01-24 10:20:27 +01:00
mdro.Rd fix first isolate 2023-02-10 13:13:17 +01:00
mean_amr_distance.Rd documentation, unit tests 2023-01-24 10:20:27 +01:00
microorganisms.Rd bring back `antibiogram()`, without deps 2023-02-10 16:18:00 +01:00
microorganisms.codes.Rd bring back `antibiogram()`, without deps 2023-02-10 16:18:00 +01:00
mo_matching_score.Rd documentation, unit tests 2023-01-24 10:20:27 +01:00
mo_property.Rd fix for Salmonella group A, unit tests 2023-02-10 16:47:25 +01:00
mo_source.Rd documentation, unit tests 2023-01-24 10:20:27 +01:00
pca.Rd documentation, unit tests 2023-01-24 10:20:27 +01:00
plot.Rd documentation, unit tests 2023-01-24 10:20:27 +01:00
proportion.Rd bring back `antibiogram()`, without deps 2023-02-10 16:18:00 +01:00
random.Rd documentation, unit tests 2023-01-24 10:20:27 +01:00
resistance_predict.Rd documentation, unit tests 2023-01-24 10:20:27 +01:00
skewness.Rd documentation, unit tests 2023-01-24 10:20:27 +01:00
translate.Rd fix for bind_rows2, added 4 langs 2023-02-11 21:57:12 +01:00