mirror of
https://github.com/msberends/AMR.git
synced 2026-11-16 00:10:57 +01:00
dr. M.S. (Matthijs) BerendsandClaude Opus 5.5
d683b9e7c6
- data-raw/microorganisms_files/: registry of all MO codes of every release since v2.0.0 (78,992 codes, built from the git tags), approved renames, and README with the rules; decision by Matthijs S. Berends: MO codes from before v2.0.0 are not supported - as.mo(): codes of earlier releases are translated deterministically via the internal MO_RETIRED_CODES (generated from the registry); unknown codes are no longer guessed (previously F_TRCHP, Trichophyton in v3.0.1, became Talaromyces chlamydosporus) - synonym_mo_to_accepted_mo(): a missing target of one source no longer overwrites a valid target of another source (e.g. Chaetomium abuense), and no 'renamed to itself' - taxonomy build: codes are reused and reserved from the registry instead of the development data (fixes 40 codes reused in the 2026 development data), also for phylum to family; synonym cycles are broken; dangling 'renamed to' identifiers are removed; the build stops on any broken integrity rule before saving - run_microorganisms_build.R: runs the build in chunks at its checkpoints in one R process, with progress logging and resuming from any checkpoint; prompt updated accordingly - tests: shared integrity rules (helper-microorganisms.R) used by build and testthat, registry tests over all codes, sentinel organisms, regression tests; current defects of the data on main are listed in microorganisms_known_defects.csv until the next rebuild Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
27 KiB
27 KiB
| 1 | rule | record |
|---|---|---|
| 2 | duplicated_fullname | AN_ANSKS_THLI (Anisakis kukenthalii) |
| 3 | duplicated_fullname | AN_ANSKS_NTHLI (Anisakis kukenthalii) |
| 4 | duplicated_fullname | F_BPLRS_BCHL (Bipolaris buchloes) |
| 5 | duplicated_fullname | F_BPLRS_CHLS (Bipolaris buchloes) |
| 6 | duplicated_fullname | F_CLDSP_EPCH (Cladosporium epichloes) |
| 7 | duplicated_fullname | F_CLDSP_EPCHL (Cladosporium epichloes) |
| 8 | duplicated_fullname | F_FUSRM_ALOS (Fusarium aloes) |
| 9 | duplicated_fullname | F_FUSRM_LO"ES (Fusarium aloes) |
| 10 | duplicated_fullname | B_GLCPS_NGNA (Gloeocapsa kutzingiana) |
| 11 | duplicated_fullname | B_GLCPS_ZNGNA (Gloeocapsa kutzingiana) |
| 12 | duplicated_fullname | B_HTRLB_ZNGI (Heteroleibleinia kutzingii) |
| 13 | duplicated_fullname | B_HTRLB_TZNGI (Heteroleibleinia kutzingii) |
| 14 | duplicated_fullname | F_NECTR_EPCH (Nectria epichloe) |
| 15 | duplicated_fullname | F_NECTR_CHL"E (Nectria epichloe) |
| 16 | duplicated_fullname | P_PRTSP_DYBS (Protospongia dybsoeensis) |
| 17 | duplicated_fullname | P_PRTSP_SNSS (Protospongia dybsoeensis) |
| 18 | duplicated_fullname | F_SYNCP_ALMA (Syncephalastrum alma-ataense) |
| 19 | duplicated_fullname | F_SYNCP_ANSE (Syncephalastrum alma-ataense) |
| 20 | duplicated_fullname | F_USTLG_BCHL (Ustilago buchloeformis) |
| 21 | duplicated_fullname | F_USTLG_BUCHLS (Ustilago buchloes) |
| 22 | duplicated_fullname | F_USTLG_BCHLF (Ustilago buchloeformis) |
| 23 | duplicated_fullname | F_USTLG_BCHL"ES (Ustilago buchloes) |
| 24 | duplicated_fullname | F_USTLG_ISTS (Ustilago isoetis) |
| 25 | duplicated_fullname | F_USTLG_STIS (Ustilago isoetis) |
| 26 | invalid_mo_characters | F_FUSRM_LO"ES (Fusarium aloes) |
| 27 | invalid_mo_characters | F_NECTR_CHL"E (Nectria epichloe) |
| 28 | invalid_mo_characters | F_NECTR_CHL"E_EPCH (Nectria epichloe epichloe) |
| 29 | invalid_mo_characters | F_NECTR_CHL"E_ROSE (Nectria epichloe rosea) |
| 30 | invalid_mo_characters | F_USTLG_BCHL"ES (Ustilago buchloes) |
| 31 | subspecies_code_not_under_species | F_NECTR_CHL"E_EPCH (Nectria epichloe epichloe) |
| 32 | subspecies_code_not_under_species | F_NECTR_CHL"E_ROSE (Nectria epichloe rosea) |
| 33 | mycobank_outside_fungi | P_[FAM]_CULCSPRD (Culicosporidae) |
| 34 | mycobank_outside_fungi | P_[FAM]_GOLBERGD (Golbergiidae) |
| 35 | mycobank_outside_fungi | P_[FAM]_JANACEKD (Janacekiidae) |
| 36 | mycobank_outside_fungi | B_PIRLL_CRCN (Pirella circinans) |
| 37 | mycobank_outside_fungi | B_TRCHP (Trichophyton) |
| 38 | mycobank_outside_fungi | B_TRCHP_SNCM (Trichophyton abissinicum) |
| 39 | mycobank_outside_fungi | B_TRCHP_MNTM (Trichophyton acuminatum) |
| 40 | mycobank_outside_fungi | B_TRCHP_ACTL (Trichophyton acutulum) |
| 41 | mycobank_outside_fungi | B_TRCHP_AFRC (Trichophyton africanum) |
| 42 | mycobank_outside_fungi | B_TRCHP_AJLL (Trichophyton ajelloi) |
| 43 | mycobank_outside_fungi | B_TRCHP_AJLL_AJLL (Trichophyton ajelloi ajelloi) |
| 44 | mycobank_outside_fungi | B_TRCHP_AJLL_NANM (Trichophyton ajelloi nanum) |
| 45 | mycobank_outside_fungi | B_TRCHP_ALBC (Trichophyton albiciscans) |
| 46 | mycobank_outside_fungi | B_TRCHP_ALBM (Trichophyton album) |
| 47 | mycobank_outside_fungi | B_TRCHP_ANGL (Trichophyton angolense) |
| 48 | mycobank_outside_fungi | B_TRCHP_ANNL (Trichophyton annulosum) |
| 49 | mycobank_outside_fungi | B_TRCHP_APTH (Trichophyton apathogenicum) |
| 50 | mycobank_outside_fungi | B_TRCHP_ARLT (Trichophyton areolatum) |
| 51 | mycobank_outside_fungi | B_TRCHP_ASTR (Trichophyton asteroides) |
| 52 | mycobank_outside_fungi | B_TRCHP_AVRC (Trichophyton avaricum) |
| 53 | mycobank_outside_fungi | B_TRCHP_AVIM (Trichophyton avium) |
| 54 | mycobank_outside_fungi | B_TRCHP_LCNM (Trichophyton balcaneum) |
| 55 | mycobank_outside_fungi | B_TRCHP_BTNR (Trichophyton batonrougei) |
| 56 | mycobank_outside_fungi | B_TRCHP_BNHM (Trichophyton benhamiae) |
| 57 | mycobank_outside_fungi | B_TRCHP_BNHM_BNHM (Trichophyton benhamiae benhamiae) |
| 58 | mycobank_outside_fungi | B_TRCHP_BNHM_LUTM (Trichophyton benhamiae luteum) |
| 59 | mycobank_outside_fungi | B_TRCHP_BCLR (Trichophyton bicolor) |
| 60 | mycobank_outside_fungi | B_TRCHP_BLNC (Trichophyton blanchardii) |
| 61 | mycobank_outside_fungi | B_TRCHP_BRMP (Trichophyton brumptii) |
| 62 | mycobank_outside_fungi | B_TRCHP_BLLS (Trichophyton bullosum) |
| 63 | mycobank_outside_fungi | B_TRCHP_CBLL (Trichophyton caballinum) |
| 64 | mycobank_outside_fungi | B_TRCHP_CMRN (Trichophyton camerounense) |
| 65 | mycobank_outside_fungi | B_TRCHP_CNDL (Trichophyton candelabrum) |
| 66 | mycobank_outside_fungi | B_TRCHP_CNNM (Trichophyton caninum) |
| 67 | mycobank_outside_fungi | B_TRCHP_CRTM (Trichophyton carateum) |
| 68 | mycobank_outside_fungi | B_TRCHP_CSTN (Trichophyton castaneum) |
| 69 | mycobank_outside_fungi | B_TRCHP_CSTL (Trichophyton castellanii) |
| 70 | mycobank_outside_fungi | B_TRCHP_CRBR (Trichophyton cerebriforme) |
| 71 | mycobank_outside_fungi | B_TRCHP_CRTN (Trichophyton ceroton) |
| 72 | mycobank_outside_fungi | B_TRCHP_CYLN (Trichophyton ceylonense) |
| 73 | mycobank_outside_fungi | B_TRCHP_CHBN (Trichophyton chibaense) |
| 74 | mycobank_outside_fungi | B_TRCHP_CHSN (Trichophyton chosenicum) |
| 75 | mycobank_outside_fungi | B_TRCHP_CNRC (Trichophyton cineraceum) |
| 76 | mycobank_outside_fungi | B_TRCHP_CNRM (Trichophyton cinereum) |
| 77 | mycobank_outside_fungi | B_TRCHP_CRCN (Trichophyton circonvolutum) |
| 78 | mycobank_outside_fungi | B_TRCHP_CCCN (Trichophyton coccineum) |
| 79 | mycobank_outside_fungi | B_TRCHP_TRCM (Trichophyton concentricum) |
| 80 | mycobank_outside_fungi | B_TRCHP_CNCM (Trichophyton conicum) |
| 81 | mycobank_outside_fungi | B_TRCHP_CRNT (Trichophyton coronatum) |
| 82 | mycobank_outside_fungi | B_TRCHP_CRTR (Trichophyton crateriforme) |
| 83 | mycobank_outside_fungi | B_TRCHP_CRTR_CRTR (Trichophyton crateriforme crateriforme) |
| 84 | mycobank_outside_fungi | B_TRCHP_CRTR_OCHR (Trichophyton crateriforme ochropyrraceum) |
| 85 | mycobank_outside_fungi | B_TRCHP_CRTRF_CRTR (Trichophyton crateriformis crateriformis) |
| 86 | mycobank_outside_fungi | B_TRCHP_CRRS (Trichophyton cruris) |
| 87 | mycobank_outside_fungi | B_TRCHP_CURR (Trichophyton currii) |
| 88 | mycobank_outside_fungi | B_TRCHP_DCTL (Trichophyton dactilistegicum) |
| 89 | mycobank_outside_fungi | B_TRCHP_DNKL (Trichophyton dankaliense) |
| 90 | mycobank_outside_fungi | B_TRCHP_DCLV (Trichophyton decalvans) |
| 91 | mycobank_outside_fungi | B_TRCHP_CLTM (Trichophyton denticulatum) |
| 92 | mycobank_outside_fungi | B_TRCHP_DPLN (Trichophyton depilans) |
| 93 | mycobank_outside_fungi | B_TRCHP_DPRS (Trichophyton depressum) |
| 94 | mycobank_outside_fungi | B_TRCHP_DRNN (Trichophyton dernense) |
| 95 | mycobank_outside_fungi | B_TRCHP_DSCD (Trichophyton discoides) |
| 96 | mycobank_outside_fungi | B_TRCHP_EBRM (Trichophyton eboreum) |
| 97 | mycobank_outside_fungi | B_TRCHP_RCTM (Trichophyton effractum) |
| 98 | mycobank_outside_fungi | B_TRCHP_EHMN (Trichophyton ehimeense) |
| 99 | mycobank_outside_fungi | B_TRCHP_EPLN (Trichophyton epilans) |
| 100 | mycobank_outside_fungi | B_TRCHP_EQNM (Trichophyton equinum) |
| 101 | mycobank_outside_fungi | B_TRCHP_EQNM_ATTR (Trichophyton equinum autotrophicum) |
| 102 | mycobank_outside_fungi | B_TRCHP_EQNM_EQNM (Trichophyton equinum equinum) |
| 103 | mycobank_outside_fungi | B_TRCHP_ERNC (Trichophyton erinacei) |
| 104 | mycobank_outside_fungi | B_TRCHP_ERTN (Trichophyton erioton) |
| 105 | mycobank_outside_fungi | B_TRCHP_ERTR (Trichophyton eriotrephon) |
| 106 | mycobank_outside_fungi | B_TRCHP_ERPM (Trichophyton europaeum) |
| 107 | mycobank_outside_fungi | B_TRCHP_EVLC (Trichophyton evolceanui) |
| 108 | mycobank_outside_fungi | B_TRCHP_EXPN (Trichophyton expansum) |
| 109 | mycobank_outside_fungi | B_TRCHP_EXSC (Trichophyton exsiccatum) |
| 110 | mycobank_outside_fungi | B_TRCHP_LNTM (Trichophyton farinulentum) |
| 111 | mycobank_outside_fungi | B_TRCHP_FVFR (Trichophyton faviforme) |
| 112 | mycobank_outside_fungi | B_TRCHP_FVFR_ALBM (Trichophyton faviforme album) |
| 113 | mycobank_outside_fungi | B_TRCHP_FVFR_DSCD (Trichophyton faviforme discoides) |
| 114 | mycobank_outside_fungi | B_TRCHP_FVFR_FVFR (Trichophyton faviforme faviforme) |
| 115 | mycobank_outside_fungi | B_TRCHP_FVFR_OCHR (Trichophyton faviforme ochraceum) |
| 116 | mycobank_outside_fungi | B_TRCHP_FLNM (Trichophyton felineum) |
| 117 | mycobank_outside_fungi | B_TRCHP_FRRG (Trichophyton ferrugineum) |
| 118 | mycobank_outside_fungi | B_TRCHP_FRRG_ALBM (Trichophyton ferrugineum album) |
| 119 | mycobank_outside_fungi | B_TRCHP_FRRG_FRRG (Trichophyton ferrugineum ferrugineum) |
| 120 | mycobank_outside_fungi | B_TRCHP_FRRG_URGY (Trichophyton ferrugineum uruguayense) |
| 121 | mycobank_outside_fungi | B_TRCHP_FSCH (Trichophyton fischeri) |
| 122 | mycobank_outside_fungi | B_TRCHP_FLVS (Trichophyton flavescens) |
| 123 | mycobank_outside_fungi | B_TRCHP_FLVV (Trichophyton flavovirens) |
| 124 | mycobank_outside_fungi | B_TRCHP_FLVM (Trichophyton flavum) |
| 125 | mycobank_outside_fungi | B_TRCHP_FLRL (Trichophyton floreale) |
| 126 | mycobank_outside_fungi | B_TRCHP_FLRF (Trichophyton floriforme) |
| 127 | mycobank_outside_fungi | B_TRCHP_NNSE (Trichophyton fluviomuniense) |
| 128 | mycobank_outside_fungi | B_TRCHP_FRMSN (Trichophyton formosanum) |
| 129 | mycobank_outside_fungi | B_TRCHP_FLGN (Trichophyton fuligineum) |
| 130 | mycobank_outside_fungi | B_TRCHP_FMTM (Trichophyton fumatum) |
| 131 | mycobank_outside_fungi | B_TRCHP_FSCS (Trichophyton fuscosulcatum) |
| 132 | mycobank_outside_fungi | B_TRCHP_GLLN (Trichophyton gallinae) |
| 133 | mycobank_outside_fungi | B_TRCHP_GLLP (Trichophyton gallopavum) |
| 134 | mycobank_outside_fungi | B_TRCHP_GMLL (Trichophyton gamelleirae) |
| 135 | mycobank_outside_fungi | B_TRCHP_GERG (Trichophyton georgiae) |
| 136 | mycobank_outside_fungi | B_TRCHP_LBRM (Trichophyton glabrum) |
| 137 | mycobank_outside_fungi | B_TRCHP_LBRM_FSCN (Trichophyton glabrum fuscinum) |
| 138 | mycobank_outside_fungi | B_TRCHP_LBRM_GLBR (Trichophyton glabrum glabrum) |
| 139 | mycobank_outside_fungi | B_TRCHP_GLOR (Trichophyton gloriae) |
| 140 | mycobank_outside_fungi | B_TRCHP_GRVL (Trichophyton gourvilii) |
| 141 | mycobank_outside_fungi | B_TRCHP_GRVL_GRVL (Trichophyton gourvilii gourvilii) |
| 142 | mycobank_outside_fungi | B_TRCHP_NLSM (Trichophyton granulosum) |
| 143 | mycobank_outside_fungi | B_TRCHP_GRSM (Trichophyton griseum) |
| 144 | mycobank_outside_fungi | B_TRCHP_GZZN (Trichophyton guzzonii) |
| 145 | mycobank_outside_fungi | B_TRCHP_GYPS (Trichophyton gypseum) |
| 146 | mycobank_outside_fungi | B_TRCHP_GYPS_ASTR (Trichophyton gypseum asteroides) |
| 147 | mycobank_outside_fungi | B_TRCHP_GYPS_CHBN (Trichophyton gypseum chibaense) |
| 148 | mycobank_outside_fungi | B_TRCHP_GYPS_GMML (Trichophyton gypseum gemmulolaniferum) |
| 149 | mycobank_outside_fungi | B_TRCHP_GYPS_GRNL (Trichophyton gypseum granulosum) |
| 150 | mycobank_outside_fungi | B_TRCHP_GYPS_GYPS (Trichophyton gypseum gypseum) |
| 151 | mycobank_outside_fungi | B_TRCHP_GYPS_HLCM (Trichophyton gypseum hiulcum) |
| 152 | mycobank_outside_fungi | B_TRCHP_GYPS_KFMW (Trichophyton gypseum kaufmann-wolfii) |
| 153 | mycobank_outside_fungi | B_TRCHP_GYPS_LCTC (Trichophyton gypseum lacticolor) |
| 154 | mycobank_outside_fungi | B_TRCHP_GYPS_QNCK (Trichophyton gypseum quinckeanum) |
| 155 | mycobank_outside_fungi | B_TRCHP_GYPS_RDNS (Trichophyton gypseum radians) |
| 156 | mycobank_outside_fungi | B_TRCHP_GYPS_RDLT (Trichophyton gypseum radiolatum) |
| 157 | mycobank_outside_fungi | B_TRCHP_GYPS_RDPL (Trichophyton gypseum radioplicatum) |
| 158 | mycobank_outside_fungi | B_TRCHP_GYPS_SBFS (Trichophyton gypseum subfuscum) |
| 159 | mycobank_outside_fungi | B_TRCHP_IMMR (Trichophyton immergens) |
| 160 | mycobank_outside_fungi | B_TRCHP_NDCM (Trichophyton indicum) |
| 161 | mycobank_outside_fungi | B_TRCHP_INDT (Trichophyton indotineae) |
| 162 | mycobank_outside_fungi | B_TRCHP_INGN (Trichophyton inguinale) |
| 163 | mycobank_outside_fungi | B_TRCHP_INTR (Trichophyton interdigitale) |
| 164 | mycobank_outside_fungi | B_TRCHP_RGNS (Trichophyton intertriginis) |
| 165 | mycobank_outside_fungi | B_TRCHP_JPNC (Trichophyton japonicum) |
| 166 | mycobank_outside_fungi | B_TRCHP_KGWN (Trichophyton kagawaense) |
| 167 | mycobank_outside_fungi | B_TRCHP_KANE (Trichophyton kanei) |
| 168 | mycobank_outside_fungi | B_TRCHP_KFMW (Trichophyton kaufmann-wolfii) |
| 169 | mycobank_outside_fungi | B_TRCHP_KRJD (Trichophyton krajdenii) |
| 170 | mycobank_outside_fungi | B_TRCHP_KRYN (Trichophyton kuryangei) |
| 171 | mycobank_outside_fungi | B_TRCHP_LCTC (Trichophyton lacticolor) |
| 172 | mycobank_outside_fungi | B_TRCHP_LNGR (Trichophyton langeronii) |
| 173 | mycobank_outside_fungi | B_TRCHP_LPFR (Trichophyton lipoferum) |
| 174 | mycobank_outside_fungi | B_TRCHP_LNGF (Trichophyton longifusum) |
| 175 | mycobank_outside_fungi | B_TRCHP_LSNC (Trichophyton louisianicum) |
| 176 | mycobank_outside_fungi | B_TRCHP_LXRN (Trichophyton luxurians) |
| 177 | mycobank_outside_fungi | B_TRCHP_MNSN (Trichophyton mansonii) |
| 178 | mycobank_outside_fungi | B_TRCHP_MRGN (Trichophyton marginatum) |
| 179 | mycobank_outside_fungi | B_TRCHP_MART (Trichophyton mariatii) |
| 180 | mycobank_outside_fungi | B_TRCHP_MGLS_ENDT (Trichophyton megalosporum endothrix) |
| 181 | mycobank_outside_fungi | B_TRCHP_MGLS_MGLS (Trichophyton megalosporum megalosporum) |
| 182 | mycobank_outside_fungi | B_TRCHP_MGNN (Trichophyton megninii) |
| 183 | mycobank_outside_fungi | B_TRCHP_MNTG (Trichophyton mentagrophytes) |
| 184 | mycobank_outside_fungi | B_TRCHP_MNTG_ASTR (Trichophyton mentagrophytes asteroides) |
| 185 | mycobank_outside_fungi | B_TRCHP_MNTG_BTNR (Trichophyton mentagrophytes batonrougei) |
| 186 | mycobank_outside_fungi | B_TRCHP_MNTG_CCRB (Trichophyton mentagrophytes cucurbeticum) |
| 187 | mycobank_outside_fungi | B_TRCHP_MNTG_ERNC (Trichophyton mentagrophytes erinacei) |
| 188 | mycobank_outside_fungi | B_TRCHP_MNTG_GOTZ (Trichophyton mentagrophytes goetzii) |
| 189 | mycobank_outside_fungi | B_TRCHP_MNTG_GRNL (Trichophyton mentagrophytes granulosum) |
| 190 | mycobank_outside_fungi | B_TRCHP_MNTG_GYPS (Trichophyton mentagrophytes gypseum) |
| 191 | mycobank_outside_fungi | B_TRCHP_MNTG_INDT (Trichophyton mentagrophytes indotineae) |
| 192 | mycobank_outside_fungi | B_TRCHP_MNTG_INTR (Trichophyton mentagrophytes interdigitale) |
| 193 | mycobank_outside_fungi | B_TRCHP_MNTG_LCTC (Trichophyton mentagrophytes lacticolor) |
| 194 | mycobank_outside_fungi | B_TRCHP_MNTG_MNTG (Trichophyton mentagrophytes mentagrophytes) |
| 195 | mycobank_outside_fungi | B_TRCHP_MNTG_NDLR (Trichophyton mentagrophytes nodulare) |
| 196 | mycobank_outside_fungi | B_TRCHP_MNTG_PRSC (Trichophyton mentagrophytes persicolor) |
| 197 | mycobank_outside_fungi | B_TRCHP_MNTG_QNCK (Trichophyton mentagrophytes quinckeanum) |
| 198 | mycobank_outside_fungi | B_TRCHP_MCRS (Trichophyton microsporum) |
| 199 | mycobank_outside_fungi | B_TRCHP_MLCH (Trichophyton milochevitchii) |
| 200 | mycobank_outside_fungi | B_TRCHP_MNMM (Trichophyton minimum) |
| 201 | mycobank_outside_fungi | B_TRCHP_MLTC (Trichophyton multicolor) |
| 202 | mycobank_outside_fungi | B_TRCHP_NDFR (Trichophyton nodiformans) |
| 203 | mycobank_outside_fungi | B_TRCHP_OCNC (Trichophyton oceanicum) |
| 204 | mycobank_outside_fungi | B_TRCHP_OCHT (Trichophyton ochoterenai) |
| 205 | mycobank_outside_fungi | B_TRCHP_HRCM (Trichophyton ochraceum) |
| 206 | mycobank_outside_fungi | B_TRCHP_RRCM (Trichophyton ochropyrraceum) |
| 207 | mycobank_outside_fungi | B_TRCHP_OLEX (Trichophyton olexae) |
| 208 | mycobank_outside_fungi | B_TRCHP_ONYC (Trichophyton onychocola) |
| 209 | mycobank_outside_fungi | B_TRCHP_OTAE (Trichophyton otae) |
| 210 | mycobank_outside_fungi | B_TRCHP_PPLL (Trichophyton papillosum) |
| 211 | mycobank_outside_fungi | B_TRCHP_PEDS (Trichophyton pedis) |
| 212 | mycobank_outside_fungi | B_TRCHP_PRSC (Trichophyton persicolor) |
| 213 | mycobank_outside_fungi | B_TRCHP_PRSCM (Trichophyton persicum) |
| 214 | mycobank_outside_fungi | B_TRCHP_PRVS (Trichophyton pervesii) |
| 215 | mycobank_outside_fungi | B_TRCHP_PHSL (Trichophyton phaseoliforme) |
| 216 | mycobank_outside_fungi | B_TRCHP_PCTR (Trichophyton pictor) |
| 217 | mycobank_outside_fungi | B_TRCHP_PLSM (Trichophyton pilosum) |
| 218 | mycobank_outside_fungi | B_TRCHP_PLCT (Trichophyton plicatile) |
| 219 | mycobank_outside_fungi | B_TRCHP_PLRZ (Trichophyton plurizoniforme) |
| 220 | mycobank_outside_fungi | B_TRCHP_PLYG (Trichophyton polygorum) |
| 221 | mycobank_outside_fungi | B_TRCHP_PRTN (Trichophyton pratense) |
| 222 | mycobank_outside_fungi | B_TRCHP_PRLF (Trichophyton proliferans) |
| 223 | mycobank_outside_fungi | B_TRCHP_PRNS (Trichophyton pruinosum) |
| 224 | mycobank_outside_fungi | B_TRCHP_PSDT (Trichophyton pseudotonsurans) |
| 225 | mycobank_outside_fungi | B_TRCHP_PTRY_PTRY (Trichophyton pterygoides pterygoides) |
| 226 | mycobank_outside_fungi | B_TRCHP_PTRY_VLCM (Trichophyton pterygoides violaceum) |
| 227 | mycobank_outside_fungi | B_TRCHP_RPRM (Trichophyton purpureum) |
| 228 | mycobank_outside_fungi | B_TRCHP_CKNM (Trichophyton quinckeanum) |
| 229 | mycobank_outside_fungi | B_TRCHP_RDNS (Trichophyton radians) |
| 230 | mycobank_outside_fungi | B_TRCHP_RDCS (Trichophyton radicosum) |
| 231 | mycobank_outside_fungi | B_TRCHP_RDLT (Trichophyton radiolatum) |
| 232 | mycobank_outside_fungi | B_TRCHP_RDPL (Trichophyton radioplicatum) |
| 233 | mycobank_outside_fungi | B_TRCHP_RBTS (Trichophyton raubitschekii) |
| 234 | mycobank_outside_fungi | B_TRCHP_RDLL (Trichophyton redellii) |
| 235 | mycobank_outside_fungi | B_TRCHP_RGLR (Trichophyton regulare) |
| 236 | mycobank_outside_fungi | B_TRCHP_RQTT (Trichophyton roquettei) |
| 237 | mycobank_outside_fungi | B_TRCHP_ROSCM (Trichophyton rosaceum) |
| 238 | mycobank_outside_fungi | B_TRCHP_ROSM (Trichophyton roseum) |
| 239 | mycobank_outside_fungi | B_TRCHP_RTND (Trichophyton rotundum) |
| 240 | mycobank_outside_fungi | B_TRCHP_RBDM (Trichophyton rubidum) |
| 241 | mycobank_outside_fungi | B_TRCHP_RBRM (Trichophyton rubrum) |
| 242 | mycobank_outside_fungi | B_TRCHP_RBRM_FLVM (Trichophyton rubrum flavum) |
| 243 | mycobank_outside_fungi | B_TRCHP_RBRM_NGRC (Trichophyton rubrum nigricans) |
| 244 | mycobank_outside_fungi | B_TRCHP_RBRM_OCNC (Trichophyton rubrum oceanicum) |
| 245 | mycobank_outside_fungi | B_TRCHP_RBRM_RDHN (Trichophyton rubrum rodhainii) |
| 246 | mycobank_outside_fungi | B_TRCHP_RBRM_RBRM (Trichophyton rubrum rubrum) |
| 247 | mycobank_outside_fungi | B_TRCHP_SBRD (Trichophyton sabouraudii) |
| 248 | mycobank_outside_fungi | B_TRCHP_SBRD_PLSM (Trichophyton sabouraudii pilosum) |
| 249 | mycobank_outside_fungi | B_TRCHP_SBRD_SBRD (Trichophyton sabouraudii sabouraudii) |
| 250 | mycobank_outside_fungi | B_TRCHP_STNS (Trichophyton saitense) |
| 251 | mycobank_outside_fungi | B_TRCHP_SLTN (Trichophyton saltense) |
| 252 | mycobank_outside_fungi | B_TRCHP_SRKS (Trichophyton sarkisovii) |
| 253 | mycobank_outside_fungi | B_TRCHP_SCHN (Trichophyton schoenleinii) |
| 254 | mycobank_outside_fungi | B_TRCHP_SCHN_GLCM (Trichophyton schoenleinii mongolicum) |
| 255 | mycobank_outside_fungi | B_TRCHP_SCHN_SCHN (Trichophyton schoenleinii schoenleinii) |
| 256 | mycobank_outside_fungi | B_TRCHP_SERS (Trichophyton serisei) |
| 257 | mycobank_outside_fungi | B_TRCHP_SIMI (Trichophyton simii) |
| 258 | mycobank_outside_fungi | B_TRCHP_SNGL (Trichophyton singulare) |
| 259 | mycobank_outside_fungi | B_TRCHP_SDNN (Trichophyton soudanense) |
| 260 | mycobank_outside_fungi | B_TRCHP_SPDX (Trichophyton spadix) |
| 261 | mycobank_outside_fungi | B_TRCHP_SPRL (Trichophyton spiraliforme) |
| 262 | mycobank_outside_fungi | B_TRCHP_SLFR (Trichophyton sulfureum) |
| 263 | mycobank_outside_fungi | B_TRCHP_THRN (Trichophyton teheraniense) |
| 264 | mycobank_outside_fungi | B_TRCHP_TNSH (Trichophyton tenuishyphum) |
| 265 | mycobank_outside_fungi | B_TRCHP_TRRS (Trichophyton terrestre) |
| 266 | mycobank_outside_fungi | B_TRCHP_GNSE (Trichophyton thuringiense) |
| 267 | mycobank_outside_fungi | B_TRCHP_TNSR (Trichophyton tonsurans) |
| 268 | mycobank_outside_fungi | B_TRCHP_TNSR_ACMN (Trichophyton tonsurans acuminatum) |
| 269 | mycobank_outside_fungi | B_TRCHP_TNSR_CLST (Trichophyton tonsurans closterosporum) |
| 270 | mycobank_outside_fungi | B_TRCHP_TNSR_EFFR (Trichophyton tonsurans effractum) |
| 271 | mycobank_outside_fungi | B_TRCHP_TNSR_EXSC (Trichophyton tonsurans exsiccatum) |
| 272 | mycobank_outside_fungi | B_TRCHP_TNSR_PRFR (Trichophyton tonsurans perforans) |
| 273 | mycobank_outside_fungi | B_TRCHP_TNSR_SLFR (Trichophyton tonsurans sulfureum) |
| 274 | mycobank_outside_fungi | B_TRCHP_TNSR_TNSR (Trichophyton tonsurans tonsurans) |
| 275 | mycobank_outside_fungi | B_TRCHP_UMBL (Trichophyton umbilicatum) |
| 276 | mycobank_outside_fungi | B_TRCHP_VNBR (Trichophyton vanbreuseghemii) |
| 277 | mycobank_outside_fungi | B_TRCHP_VRRC (Trichophyton verrucosum) |
| 278 | mycobank_outside_fungi | B_TRCHP_VRRC_ALBM (Trichophyton verrucosum album) |
| 279 | mycobank_outside_fungi | B_TRCHP_VRRC_ATTR (Trichophyton verrucosum autotrophicum) |
| 280 | mycobank_outside_fungi | B_TRCHP_VRRC_DSCD (Trichophyton verrucosum discoides) |
| 281 | mycobank_outside_fungi | B_TRCHP_VRRC_OCHR (Trichophyton verrucosum ochraceum) |
| 282 | mycobank_outside_fungi | B_TRCHP_VRRC_VRRC (Trichophyton verrucosum verrucosum) |
| 283 | mycobank_outside_fungi | B_TRCHP_VINN (Trichophyton viannai) |
| 284 | mycobank_outside_fungi | B_TRCHP_VLLS (Trichophyton villosum) |
| 285 | mycobank_outside_fungi | B_TRCHP_VNSM (Trichophyton vinosum) |
| 286 | mycobank_outside_fungi | B_TRCHP_VLCM (Trichophyton violaceum) |
| 287 | mycobank_outside_fungi | B_TRCHP_VLCM_DCLV (Trichophyton violaceum decalvans) |
| 288 | mycobank_outside_fungi | B_TRCHP_VLCM_INDC (Trichophyton violaceum indicum) |
| 289 | mycobank_outside_fungi | B_TRCHP_VLCM_KHRT (Trichophyton violaceum khartoumense) |
| 290 | mycobank_outside_fungi | B_TRCHP_VLCM_VLCM (Trichophyton violaceum violaceum) |
| 291 | mycobank_outside_fungi | B_TRCHP_YAND (Trichophyton yaoundei) |
| 292 | mycobank_outside_fungi | B_TBRCL_GLND (Tubercularia glandicola) |
| 293 | mycobank_outside_fungi | C_TBRCN_PNCT (Tuburcinia punctiformis) |
| 294 | synonym_with_unknown_target | F_CHTMM_AMBR (Chaetomium amberpetense) |
| 295 | synonym_with_unknown_target | F_CHTMM_FSSPR (Chaetomium fusisporale) |
| 296 | synonym_with_unknown_target | F_CHTMM_PSDR (Chaetomium pseudoerraticum) |
| 297 | synonym_with_unknown_target | F_CHTMM_RCTP (Chaetomium rectopilium) |
| 298 | synonym_with_unknown_target | F_CHTMM_SRPN (Chaetomium serpentinum) |
| 299 | synonym_with_unknown_target | F_CHTMM_TRTC (Chaetomium triticicola) |
| 300 | synonym_with_unknown_target | F_CHTMM_VRRC (Chaetomium verrucichaeta) |
| 301 | synonym_with_unknown_target | F_FUSRM_CEST (Fusarium cesatii) |
| 302 | synonym_with_unknown_target | F_HNSNL (Hansenula) |
| 303 | synonym_with_unknown_target | F_HNDRS_TGNA (Hendersonula fructigena) |
| 304 | synonym_with_unknown_target | F_HNDRS_SYMP (Hendersonula symploci) |
| 305 | synonym_with_unknown_target | F_HNDRS_TREV (Hendersonula trevoae) |
| 306 | synonym_with_unknown_target | F_HPHLA (Hylophila) |
| 307 | synonym_with_unknown_target | B_LPTBS_CCSC (Leptobasis caucasica) |
| 308 | synonym_with_unknown_target | B_LPTBS_SHNX (Leptobasis shaanxiensis) |
| 309 | synonym_with_unknown_target | F_[FAM]_LETROUTC (Letrouitiaceae) |
| 310 | synonym_with_unknown_target | F_MTSCH_UNCS (Metschnikowia unicuspidata) |
| 311 | synonym_with_unknown_target | B_MCRCH_CRSS (Microchaete crassa) |
| 312 | synonym_with_unknown_target | B_MCRCH_STRT (Microchaete striatula) |
| 313 | synonym_with_unknown_target | B_MCRCH_TNSS (Microchaete tenuissima) |
| 314 | synonym_with_unknown_target | F_MRTHR (Morthiera) |
| 315 | synonym_with_unknown_target | F_NAUMV (Naumovia) |
| 316 | synonym_with_unknown_target | F_OMPHLR (Omphalaria) |
| 317 | synonym_with_unknown_target | F_[FAM]_ORBILIAC (Orbiliaceae) |
| 318 | synonym_with_unknown_target | P_PMPHG (Pamphagus) |
| 319 | synonym_with_unknown_target | F_[FAM]_PELTULAC (Peltulaceae) |
| 320 | synonym_with_unknown_target | F_PHOMA_FSCT (Phoma fuscata) |
| 321 | synonym_with_unknown_target | F_PHMPS_CYDN (Phomopsis cydoniae) |
| 322 | synonym_with_unknown_target | F_PLYSC (Polysaccum) |
| 323 | synonym_with_unknown_target | P_RHMNS (Rhynchomonas) |
| 324 | synonym_with_unknown_target | F_[FAM]_SAREACEA (Sareaceae) |
| 325 | synonym_with_unknown_target | F_[FAM]_SCLRCCCC (Sclerococcaceae) |
| 326 | synonym_with_unknown_target | F_SPRTR_BRNN (Sporotrichum brunneum) |
| 327 | synonym_with_unknown_target | F_SPRTR_CLCG (Sporotrichum calcigenum) |
| 328 | synonym_with_unknown_target | F_SPRTR_CNNB (Sporotrichum cinnabarinum) |
| 329 | synonym_with_unknown_target | F_SPRTR_ELCH (Sporotrichum elaeochroum) |
| 330 | synonym_with_unknown_target | F_SPRTR_HMSM (Sporotrichum hamosum) |
| 331 | synonym_with_unknown_target | F_SPRTR_HLSR (Sporotrichum holosericeum) |
| 332 | synonym_with_unknown_target | F_SPRTR_PRTN (Sporotrichum parietinum) |
| 333 | synonym_with_unknown_target | F_USTLG_TULP (Ustilago tulipae) |
| 334 | synonym_chain_not_ending | F_CPLLD_DNSPR (Capillidium denaeosporus) |
| 335 | synonym_chain_not_ending | F_CPLLD_LBTS (Capillidium lobatus) |
| 336 | synonym_chain_not_ending | F_CPLLD_RHYSS (Capillidium rhysosporus) |
| 337 | synonym_chain_not_ending | F_CNDBL_DNSPR (Conidiobolus denaeosporum) |
| 338 | synonym_chain_not_ending | F_CNDBL_LBTM (Conidiobolus lobatum) |
| 339 | synonym_chain_not_ending | F_CNDBL_RHYSS (Conidiobolus rhysosporum) |
| 340 | synonym_chain_not_ending | F_OCHRC_QTCM (Ochroconis aquaticum) |
| 341 | synonym_chain_not_ending | F_OCHRC_LVCM (Ochroconis olivaceum) |
| 342 | synonym_chain_not_ending | F_OCHRC_PHRM (Ochroconis phaeophorum) |
| 343 | synonym_chain_not_ending | F_OCHRC_RMSM (Ochroconis ramosum) |
| 344 | synonym_chain_not_ending | F_OCHRC_BSTM (Ochroconis robustum) |
| 345 | synonym_chain_not_ending | F_OCHRC_RCSM (Ochroconis verrucosum) |
| 346 | synonym_chain_not_ending | F_PGMDA_TRCM (Pseudosigmoidea excentricum) |
| 347 | synonym_chain_not_ending | F_SCLCB_AQTC (Scolecobasidium aquatica) |
| 348 | synonym_chain_not_ending | F_SCLCB_EXCNT (Scolecobasidium excentrica) |
| 349 | synonym_chain_not_ending | F_SCLCB_OLVC (Scolecobasidium olivacea) |
| 350 | synonym_chain_not_ending | F_SCLCB_PHPH (Scolecobasidium phaeophora) |
| 351 | synonym_chain_not_ending | F_SCLCB_RAMS (Scolecobasidium ramosa) |
| 352 | synonym_chain_not_ending | F_SCLCB_RBST (Scolecobasidium robusta) |
| 353 | synonym_chain_not_ending | F_SCLCB_RCSA (Scolecobasidium verrucosa) |
| 354 | registered_code_with_other_taxon | B_ALTBC (Alitibacter) |
| 355 | registered_code_with_other_taxon | F_AMRPH (Amorphotheca) |
| 356 | registered_code_with_other_taxon | F_AMPHC (Amphichorda) |
| 357 | registered_code_with_other_taxon | F_ANTHR (Antherospora) |
| 358 | registered_code_with_other_taxon | F_ARTHR (Arthroascus) |
| 359 | registered_code_with_other_taxon | F_ASCPH_GRNL (Ascophanus granulatus) |
| 360 | registered_code_with_other_taxon | F_ASTRM (Asteroma) |
| 361 | registered_code_with_other_taxon | F_CHLMY (Chlamydoabsidia) |
| 362 | registered_code_with_other_taxon | P_CHYTR (Chytridioides) |
| 363 | registered_code_with_other_taxon | P_CHYTR_SCHZ (Chytridioides schizophylli) |
| 364 | registered_code_with_other_taxon | F_CLVLN (Clavulina) |
| 365 | registered_code_with_other_taxon | F_COLLM_CHLM (Collema cheilium) |
| 366 | registered_code_with_other_taxon | F_CRTNR_CRCC (Cortinarius croceocoeruleus) |
| 367 | registered_code_with_other_taxon | F_CRTNR_HRCN (Cortinarius hircinus) |
| 368 | registered_code_with_other_taxon | F_CYLND (Cylindricascospora) |
| 369 | registered_code_with_other_taxon | F_DMRSP (Dimerospora) |
| 370 | registered_code_with_other_taxon | F_ERYSP_UMBL (Erysiphe umbilici) |
| 371 | registered_code_with_other_taxon | B_FCLBCT_INTS (Faecalibacterium intestinale) |
| 372 | registered_code_with_other_taxon | B_[FAM]_FRVDBCTR (Fervidibacteraceae) |
| 373 | registered_code_with_other_taxon | B_[FAM]_FUSBCTRC (Fusibacteraceae) |
| 374 | registered_code_with_other_taxon | B_HTRSC (Heteroscytonema) |
| 375 | registered_code_with_other_taxon | B_HMSPH (Humisphingomonas) |
| 376 | registered_code_with_other_taxon | F_HYDRP (Hydrophora) |
| 377 | registered_code_with_other_taxon | F_IDRLL (Idriella) |
| 378 | registered_code_with_other_taxon | F_LCNLL (Lecaniella) |
| 379 | registered_code_with_other_taxon | F_LECID_GLMR (Lecidea glomerella) |
| 380 | registered_code_with_other_taxon | F_LECID_SBLT (Lecidea subuletorum) |
| 381 | registered_code_with_other_taxon | B_MYCBC_AVIM-C (Mycobacterium avium complex) |
| 382 | registered_code_with_other_taxon | B_MYCBC_NNSE (Mycobacterium holstebronense) |
| 383 | registered_code_with_other_taxon | F_NMSPR (Naemaspora) |
| 384 | registered_code_with_other_taxon | F_NCNTH (Neoconiothyrium) |
| 385 | registered_code_with_other_taxon | F_PRDPS (Parodiopsis) |
| 386 | registered_code_with_other_taxon | B_PHYTP (Phytopseudomonas) |
| 387 | registered_code_with_other_taxon | F_PLSPR_SCRP (Pleospora scirpicola) |
| 388 | registered_code_with_other_taxon | F_PLYSC (Polysaccum) |
| 389 | registered_code_with_other_taxon | F_PSDSP (Pseudoasperisporium) |
| 390 | registered_code_with_other_taxon | B_PSDLC (Pseudolactococcus) |
| 391 | registered_code_with_other_taxon | F_PSDPN (Pseudopenicillium) |
| 392 | registered_code_with_other_taxon | F_PSRTC (Psorotichia) |
| 393 | registered_code_with_other_taxon | F_RINDN_CNTR (Rinodina contribuens) |
| 394 | registered_code_with_other_taxon | F_SPRSR_ANTH (Sporisorium anthephorae) |
| 395 | registered_code_with_other_taxon | B_SMYCS_GLVS (Streptomyces gilvus) |
| 396 | registered_code_with_other_taxon | F_ZYGRH (Zygorhynchus) |
| 397 | sentinel | Tropheryma whipplei is missing |
| 398 | sentinel | Ascaris lumbricoides is missing |
| 399 | sentinel | Echinococcus granulosus is missing |
| 400 | sentinel | Leishmania donovani is missing |
| 401 | sentinel | Trichophyton rubrum domain is Bacteria instead of Fungi |
| 402 | sentinel | Necator americanus domain is Fungi instead of Animalia |
| 403 | sentinel | Capillaria domain is Fungi instead of Animalia |
| 404 | sentinel | Trichophyton rubrum family is Oscillatoriaceae instead of Arthrodermataceae |
| 405 | sentinel | Mucor family is instead of Mucoraceae |
| 406 | sentinel | Trichophyton rubrum has a code with the wrong prefix |
| 407 | sentinel | Necator americanus has a code with the wrong prefix |
| 408 | sentinel | Capillaria has a code with the wrong prefix |