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Code Releases Activity
AMR/R
History
dr. M.S. (Matthijs) Berends d77ad6bd6e
(v2.1.1.9227) unit test fixes
2025-03-27 15:36:27 +01:00
..
aa_amr-package.R
(v2.1.1.9186) replace antibiotics with antimicrobials!
2025-03-07 20:43:26 +01:00
aa_globals.R
(v2.1.1.9225) fix geom_hline()/_vline() in MIC plotting, add EUCAT 1.2 in full, add London contribs, fix mo codes, add Kleb pneu complex
2025-03-26 17:19:17 +01:00
aa_helper_functions.R
(v2.1.1.9227) unit test fixes
2025-03-27 15:36:27 +01:00
aa_helper_pm_functions.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
aa_options.R
(v2.1.1.9200) new argument capped_mic_handling, add Search to website
2025-03-14 17:01:50 +01:00
ab_from_text.R
(v2.1.1.9186) replace antibiotics with antimicrobials!
2025-03-07 20:43:26 +01:00
ab_property.R
(v2.1.1.9186) replace antibiotics with antimicrobials!
2025-03-07 20:43:26 +01:00
ab.R
(v2.1.1.9223) allow + ab
2025-03-20 22:56:32 +01:00
age.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
amr_selectors.R
(v2.1.1.9226) update intrinsic_resistant, unit test fixes
2025-03-27 15:20:22 +01:00
antibiogram.R
(v2.1.1.9223) allow + ab
2025-03-20 22:56:32 +01:00
atc_online.R
(v2.1.1.9186) replace antibiotics with antimicrobials!
2025-03-07 20:43:26 +01:00
av_from_text.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
av_property.R
(v2.1.1.9079) fix for uti in as.sir()
2024-09-24 15:34:12 +02:00
av.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
availability.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
bug_drug_combinations.R
(v2.1.1.9186) replace antibiotics with antimicrobials!
2025-03-07 20:43:26 +01:00
count.R
(v2.1.1.9186) replace antibiotics with antimicrobials!
2025-03-07 20:43:26 +01:00
custom_antimicrobials.R
(v2.1.1.9186) replace antibiotics with antimicrobials!
2025-03-07 20:43:26 +01:00
custom_eucast_rules.R
(v2.1.1.9227) unit test fixes
2025-03-27 15:36:27 +01:00
custom_microorganisms.R
(v2.1.1.9163) cleanup
2025-02-27 14:04:29 +01:00
data.R
(v2.1.1.9226) update intrinsic_resistant, unit test fixes
2025-03-27 15:20:22 +01:00
disk.R
(v2.1.1.9182) fix AMR selectors for tidymodels, add unit tests
2025-03-03 12:59:27 +01:00
eucast_rules.R
(v2.1.1.9227) unit test fixes
2025-03-27 15:36:27 +01:00
export_biosample.R
(v2.1.1.9163) cleanup
2025-02-27 14:04:29 +01:00
first_isolate.R
(v2.1.1.9186) replace antibiotics with antimicrobials!
2025-03-07 20:43:26 +01:00
g.test.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
get_episode.R
(v2.1.1.9163) cleanup
2025-02-27 14:04:29 +01:00
ggplot_pca.R
(v2.1.1.9131) implement testthat
2025-01-27 21:43:10 +01:00
ggplot_sir.R
(v2.1.1.9186) replace antibiotics with antimicrobials!
2025-03-07 20:43:26 +01:00
guess_ab_col.R
(v2.1.1.9186) replace antibiotics with antimicrobials!
2025-03-07 20:43:26 +01:00
italicise_taxonomy.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
join_microorganisms.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
key_antimicrobials.R
(v2.1.1.9186) replace antibiotics with antimicrobials!
2025-03-07 20:43:26 +01:00
kurtosis.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
like.R
(v2.1.1.9163) cleanup
2025-02-27 14:04:29 +01:00
mdro.R
(v2.1.1.9186) replace antibiotics with antimicrobials!
2025-03-07 20:43:26 +01:00
mean_amr_distance.R
(v2.1.1.9125) replace 'antibiotic selectors' with 'antimicrobial selectors'
2025-01-17 12:09:39 +01:00
mic.R
(v2.1.1.9225) fix geom_hline()/_vline() in MIC plotting, add EUCAT 1.2 in full, add London contribs, fix mo codes, add Kleb pneu complex
2025-03-26 17:19:17 +01:00
mo_matching_score.R
(v2.1.1.9133) update math formulae
2025-01-27 22:43:35 +01:00
mo_property.R
(v2.1.1.9226) update intrinsic_resistant, unit test fixes
2025-03-27 15:20:22 +01:00
mo_source.R
(v2.1.1.9125) replace 'antibiotic selectors' with 'antimicrobial selectors'
2025-01-17 12:09:39 +01:00
mo.R
(v2.1.1.9199) fix eucast
2025-03-14 13:43:22 +01:00
pca.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
plotting.R
(v2.1.1.9225) fix geom_hline()/_vline() in MIC plotting, add EUCAT 1.2 in full, add London contribs, fix mo codes, add Kleb pneu complex
2025-03-26 17:19:17 +01:00
proportion.R
(v2.1.1.9190) antibiotics deprecation in antibiogram()
2025-03-09 10:41:11 +01:00
random.R
(v2.1.1.9225) fix geom_hline()/_vline() in MIC plotting, add EUCAT 1.2 in full, add London contribs, fix mo codes, add Kleb pneu complex
2025-03-26 17:19:17 +01:00
resistance_predict.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
sir_calc.R
(v2.1.1.9190) antibiotics deprecation in antibiogram()
2025-03-09 10:41:11 +01:00
sir_df.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
sir.R
(v2.1.1.9227) unit test fixes
2025-03-27 15:36:27 +01:00
skewness.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
sysdata.rda
(v2.1.1.9227) unit test fixes
2025-03-27 15:36:27 +01:00
top_n_microorganisms.R
(v2.1.1.9163) cleanup
2025-02-27 14:04:29 +01:00
translate.R
(v2.1.1.9079) fix for uti in as.sir()
2024-09-24 15:34:12 +02:00
vctrs.R
(v2.1.1.9163) cleanup
2025-02-27 14:04:29 +01:00
whocc.R
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
zz_deprecated.R
(v2.1.1.9200) new argument capped_mic_handling, add Search to website
2025-03-14 17:01:50 +01:00
zzz.R
(v2.1.1.9190) antibiotics deprecation in antibiogram()
2025-03-09 10:41:11 +01:00