AMR/tests/testthat/test-mdro.R

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606 B
R
Executable File

context("mdro.R")
test_that("MDRO works", {
library(dplyr)
outcome <- MDRO(septic_patients, "EUCAST", info = FALSE)
# check class
expect_equal(outcome %>% class(), c('ordered', 'factor'))
outcome <- MDRO(septic_patients, "nl", info = FALSE)
# check class
expect_equal(outcome %>% class(), c('ordered', 'factor'))
# septic_patients should have these finding using Dutch guidelines
expect_equal(outcome %>% freq() %>% pull(count),
c(2, 14)) # 2 unconfirmed, 14 positive
expect_equal(BRMO(septic_patients, info = FALSE), MDRO(septic_patients, "nl", info = FALSE))
})