mirror of https://github.com/msberends/AMR.git
35 lines
1.5 KiB
R
Executable File
35 lines
1.5 KiB
R
Executable File
% Generated by roxygen2: do not edit by hand
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% Please edit documentation in R/data.R
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\docType{data}
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\name{microorganisms}
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\alias{microorganisms}
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\title{Dataset with ~2500 microorganisms}
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\format{A data.frame with 2453 observations and 12 variables:
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\describe{
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\item{\code{bactid}}{ID of microorganism}
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\item{\code{bactsys}}{Bactsyscode of microorganism}
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\item{\code{family}}{Family name of microorganism}
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\item{\code{genus}}{Genus name of microorganism, like \code{"Echerichia"}}
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\item{\code{species}}{Species name of microorganism, like \code{"coli"}}
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\item{\code{subspecies}}{Subspecies name of bio-/serovar of microorganism, like \code{"EHEC"}}
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\item{\code{fullname}}{Full name, like \code{"Echerichia coli (EHEC)"}}
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\item{\code{type}}{Type of microorganism, like \code{"Bacteria"} and \code{"Fungus/yeast"}}
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\item{\code{gramstain}}{Gram of microorganism, like \code{"Negative rods"}}
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\item{\code{aerobic}}{Logical whether bacteria is aerobic}
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\item{\code{type_nl}}{Type of microorganism in Dutch, like \code{"Bacterie"} and \code{"Schimmel/gist"}}
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\item{\code{gramstain_nl}}{Gram of microorganism in Dutch, like \code{"Negatieve staven"}}
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}}
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\source{
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MOLIS (LIS of Certe) - \url{https://www.certe.nl}
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}
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\usage{
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microorganisms
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}
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\description{
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A dataset containing 2453 microorganisms. MO codes of the UMCG can be looked up using \code{\link{microorganisms.umcg}}.
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}
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\seealso{
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\code{\link{guess_bactid}} \code{\link{antibiotics}} \code{\link{microorganisms.umcg}}
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}
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\keyword{datasets}
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