mirror of https://github.com/msberends/AMR.git
45 lines
1.5 KiB
R
Executable File
45 lines
1.5 KiB
R
Executable File
context("atc.R")
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test_that("atc_property works", {
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expect_equal(tolower(atc_property("J01CA04", property = "Name")), "amoxicillin")
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expect_equivalent(atc_property("J01CA04", "DDD"), 1)
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})
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test_that("abname works", {
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expect_equal(abname("AMOX"), "Amoxicillin")
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expect_equal(abname(c("AMOX", "GENT")), c("Amoxicillin", "Gentamicin"))
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expect_equal(abname(c("AMOX+GENT")), "Amoxicillin + gentamicin")
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expect_equal(abname("AMOX", from = 'umcg'), "Amoxicillin")
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expect_equal(abname("amox", from = 'molis'), "Amoxicillin")
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expect_equal(abname("J01CA04", from = 'atc'), "Amoxicillin")
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})
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test_that("guess_bactid works", {
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expect_identical(guess_bactid(c("E. coli", "H. influenzae")), c("ESCCOL", "HAEINF"))
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expect_equal(guess_bactid("Escherichia coli"), "ESCCOL")
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expect_equal(guess_bactid("Negative rods"), "GNR")
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expect_equal(guess_bactid(c("stau",
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"STAU",
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"staaur",
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"S. aureus",
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"S aureus",
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"Staphylococcus aureus",
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"MRSA",
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"VISA")),
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rep("STAAUR", 8))
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})
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test_that("guess_atc works", {
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expect_equal(guess_atc(c("J01FA01",
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"Erythromycin",
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"eryt",
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"ERYT",
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"ERY",
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"Erythrocin",
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"Eryzole",
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"Pediamycin")),
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rep("J01FA01", 8))
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})
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