AMR/R/globals.R

118 lines
4.3 KiB
R
Executable File

# ==================================================================== #
# TITLE #
# Antimicrobial Resistance (AMR) Analysis #
# #
# SOURCE #
# https://gitlab.com/msberends/AMR #
# #
# LICENCE #
# (c) 2018-2020 Berends MS, Luz CF et al. #
# #
# This R package is free software; you can freely use and distribute #
# it for both personal and commercial purposes under the terms of the #
# GNU General Public License version 2.0 (GNU GPL-2), as published by #
# the Free Software Foundation. #
# #
# We created this package for both routine data analysis and academic #
# research and it was publicly released in the hope that it will be #
# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. #
# Visit our website for more info: https://msberends.gitlab.io/AMR. #
# ==================================================================== #
globalVariables(c(".",
"..property",
"ab",
"ab_txt",
"abbreviations",
"angle",
"antibiotic",
"antibiotics",
"atc_group1",
"atc_group2",
"CNS_CPS",
"code",
"col_id",
"count",
"count.x",
"date_lab",
"diff.percent",
"First name",
"first_isolate_row_index",
"fullname",
"fullname_lower",
"g_species",
"genus",
"gr",
"gramstain",
"group",
"hjust",
"index",
"input",
"interpretation",
"isolates",
"item",
"key_ab",
"key_ab_lag",
"key_ab_other",
"kingdom",
"kingdom_index",
"lang",
"Last name",
"lookup",
"mdr",
"MDRO",
"median",
"microorganisms",
"microorganisms.codes",
"microorganisms.old",
"missing_names",
"mo",
"mo_new",
"mo_old",
"mono_count",
"more_than_episode_ago",
"name",
"new",
"newvar_date",
"newvar_genus_species",
"newvar_mo",
"newvar_patient_id",
"newvar_row_index",
"newvar_row_index_sorted",
"observations",
"observed",
"old",
"old_name",
"other_pat_or_mo",
"package_version",
"patient_id",
"pattern",
"plural",
"prevalence",
"R",
"real_first_isolate",
"ref",
"rsi_translation",
"rule_group",
"rule_name",
"S",
"se_max",
"se_min",
"second",
"Sex",
"species",
"species_id",
"subspecies",
"synonyms",
"total",
"txt",
"uncertainty_level",
"value",
"varname",
"x",
"xdr",
"xvar",
"y",
"year",
"yvar"))