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AMR
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dr. M.S. (Matthijs) Berends dfae4c7e7d fast-forward from pull 
Merge branch 'main' of https://github.com/msberends/AMR into main

# Conflicts:
#	DESCRIPTION
#	R/add_custom_antimicrobials.R
 		2022-10-11 10:53:51 +02:00
..
aa_globals.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
aa_helper_functions.R fix documentation 2022-10-06 11:33:30 +02:00
aa_helper_pm_functions.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
ab.R add `add_custom_antimicrobials()` 2022-10-10 20:20:39 +02:00
ab_from_text.R fix for `NA` in `as.ab()` 2022-10-10 15:44:59 +02:00
ab_property.R documentation fix 2022-10-10 21:03:39 +02:00
ab_selectors.R support ab selectors for manual AB codes 2022-10-11 10:49:55 +02:00
add_custom_antimicrobials.R fast-forward from pull 2022-10-11 10:53:51 +02:00
age.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
amr.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
atc_online.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
availability.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
bug_drug_combinations.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
count.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
custom_eucast_rules.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
data.R fix for `NA` in `as.ab()` 2022-10-10 15:44:59 +02:00
deprecated.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
disk.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
episode.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
eucast_rules.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
first_isolate.R fix for `NA` in `as.ab()` 2022-10-10 15:44:59 +02:00
g.test.R fix for `NA` in `as.ab()` 2022-10-10 15:44:59 +02:00
ggplot_pca.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
ggplot_rsi.R fix for `NA` in `as.ab()` 2022-10-10 15:44:59 +02:00
guess_ab_col.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
italicise_taxonomy.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
join_microorganisms.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
key_antimicrobials.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
kurtosis.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
like.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
mdro.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
mean_amr_distance.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
mic.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
mo.R add `mo_current()` 2022-10-10 10:12:08 +02:00
mo_matching_score.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
mo_property.R add `mo_current()` 2022-10-10 10:12:08 +02:00
mo_source.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
pca.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
plot.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
proportion.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
random.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
resistance_predict.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
rsi.R fix for `NA` in `as.ab()` 2022-10-10 15:44:59 +02:00
rsi_calc.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
rsi_df.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
skewness.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
sysdata.rda fix for mo type translation 2022-10-06 12:11:51 +02:00
translate.R fix for `NA` in `as.ab()` 2022-10-10 15:44:59 +02:00
vctrs.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
whocc.R New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
zzz.R support ab selectors for manual AB codes 2022-10-11 10:49:55 +02:00