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AMR
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AMR/R
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dr. M.S. (Matthijs) Berends c5981cdeb3 fix unit test 2024-06-04 20:17:54 +02:00
..
aa_amr-package.R v2.1.1 2023-10-22 15:51:27 +02:00
aa_globals.R rename pre-commit hook to pre-commit checks (no-check) 2024-04-23 10:55:48 +02:00
aa_helper_functions.R allow column name for `ab` in `as.sir()` 2024-05-20 21:29:13 +02:00
aa_helper_pm_functions.R new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
aa_options.R support veterinary MIC/disk translation 2024-02-24 15:16:52 +01:00
ab.R allow column name for `ab` in `as.sir()` 2024-05-20 21:29:13 +02:00
ab_from_text.R allow column name for `ab` in `as.sir()` 2024-05-20 21:29:13 +02:00
ab_property.R new Norwegian link 2024-03-03 23:24:57 +01:00
ab_selectors.R new SDD and N for `as.sir()` 2024-05-20 15:27:04 +02:00
age.R new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
antibiogram.R new SDD and N for `as.sir()` 2024-05-20 15:27:04 +02:00
atc_online.R new Norwegian link 2024-03-03 23:24:57 +01:00
av.R new Norwegian link 2024-03-03 23:24:57 +01:00
av_from_text.R new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
av_property.R new Norwegian link 2024-03-03 23:24:57 +01:00
availability.R new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
bug_drug_combinations.R unit test fix 2024-05-20 18:58:35 +02:00
count.R allow column name for `ab` in `as.sir()` 2024-05-20 21:29:13 +02:00
custom_antimicrobials.R new Norwegian link 2024-03-03 23:24:57 +01:00
custom_eucast_rules.R fix SIR interpretation 2024-05-31 09:50:54 +02:00
custom_microorganisms.R new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
data.R new SDD and N for `as.sir()` 2024-05-20 15:27:04 +02:00
disk.R update MIC comparisons 2024-04-05 16:44:43 +02:00
eucast_rules.R fix sorting of MICs, MIC autoplot titles 2024-05-30 15:50:17 +02:00
export_biosample.R fix unit test 2024-06-04 20:17:54 +02:00
first_isolate.R new SDD and N for `as.sir()` 2024-05-20 15:27:04 +02:00
g.test.R new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
get_episode.R prepare for CRAN 2023-10-20 14:51:48 +02:00
ggplot_pca.R Remove RSI from package, add extra MIC scale functions 2023-12-03 11:34:48 +01:00
ggplot_sir.R new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
guess_ab_col.R rename pre-commit hook to pre-commit checks (no-check) 2024-04-23 10:55:48 +02:00
italicise_taxonomy.R Added support for 'html' in italicize_taxonomy() (#134) 2024-02-13 13:47:07 +01:00
join_microorganisms.R new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
key_antimicrobials.R new SDD and N for `as.sir()` 2024-05-20 15:27:04 +02:00
kurtosis.R new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
like.R new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
mdro.R new SDD and N for `as.sir()` 2024-05-20 15:27:04 +02:00
mean_amr_distance.R update MIC comparisons 2024-04-05 16:44:43 +02:00
mic.R fix sorting of MICs, MIC autoplot titles 2024-05-30 15:50:17 +02:00
mo.R rename pre-commit hook to pre-commit checks (no-check) 2024-04-23 10:55:48 +02:00
mo_matching_score.R new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
mo_property.R new `mo_group_members()` 2024-04-19 10:18:21 +02:00
mo_source.R support veterinary MIC/disk translation 2024-02-24 15:16:52 +01:00
pca.R new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
plot.R autoplot fix 2024-05-30 16:39:59 +02:00
proportion.R new SDD and N for `as.sir()` 2024-05-20 15:27:04 +02:00
random.R Remove RSI from package, add extra MIC scale functions 2023-12-03 11:34:48 +01:00
resistance_predict.R new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
sir.R fix unit test 2024-06-04 20:17:54 +02:00
sir_calc.R allow column name for `ab` in `as.sir()` 2024-05-20 21:29:13 +02:00
sir_df.R new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
skewness.R new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
sysdata.rda new SDD and N for `as.sir()` 2024-05-20 15:27:04 +02:00
translate.R prepare for CRAN 2023-10-20 14:51:48 +02:00
vctrs.R fix sorting of MICs, MIC autoplot titles 2024-05-30 15:50:17 +02:00
whocc.R new Norwegian link 2024-03-03 23:24:57 +01:00
zz_deprecated.R Remove RSI from package, add extra MIC scale functions 2023-12-03 11:34:48 +01:00
zzz.R new `mo_group_members()` 2024-04-19 10:18:21 +02:00