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AMR/man
History
dr. M.S. (Matthijs) Berends e6f88241b2
(v2.1.1.9225) fix geom_hline()/_vline() in MIC plotting, add EUCAT 1.2 in full, add London contribs, fix mo codes, add Kleb pneu complex
2025-03-26 17:19:17 +01:00
..
ab_from_text.Rd
(v2.1.1.9186) replace antibiotics with antimicrobials!
2025-03-07 20:43:26 +01:00
ab_property.Rd
(v2.1.1.9186) replace antibiotics with antimicrobials!
2025-03-07 20:43:26 +01:00
add_custom_antimicrobials.Rd
(v2.1.1.9186) replace antibiotics with antimicrobials!
2025-03-07 20:43:26 +01:00
add_custom_microorganisms.Rd
(v2.1.1.9079) fix for uti in as.sir()
2024-09-24 15:34:12 +02:00
age_groups.Rd
make rsi work in more cases, documentation update
2023-02-22 14:38:57 +01:00
age.Rd
make rsi work in more cases, documentation update
2023-02-22 14:38:57 +01:00
AMR-deprecated.Rd
(v2.1.1.9198) support eucast expert rules 14 and 13.1
2025-03-14 10:10:35 +01:00
AMR-options.Rd
(v2.1.1.9200) new argument capped_mic_handling, add Search to website
2025-03-14 17:01:50 +01:00
AMR.Rd
(v2.1.1.9225) fix geom_hline()/_vline() in MIC plotting, add EUCAT 1.2 in full, add London contribs, fix mo codes, add Kleb pneu complex
2025-03-26 17:19:17 +01:00
antibiogram.Rd
(v2.1.1.9223) allow + ab
2025-03-20 22:56:32 +01:00
antimicrobial_selectors.Rd
(v2.1.1.9225) fix geom_hline()/_vline() in MIC plotting, add EUCAT 1.2 in full, add London contribs, fix mo codes, add Kleb pneu complex
2025-03-26 17:19:17 +01:00
antimicrobials.Rd
(v2.1.1.9198) support eucast expert rules 14 and 13.1
2025-03-14 10:10:35 +01:00
as.ab.Rd
(v2.1.1.9186) replace antibiotics with antimicrobials!
2025-03-07 20:43:26 +01:00
as.av.Rd
(v2.1.1.9186) replace antibiotics with antimicrobials!
2025-03-07 20:43:26 +01:00
as.disk.Rd
(v2.1.1.9095) Python support
2024-10-15 17:12:55 +02:00
as.mic.Rd
(v2.1.1.9155) new mic_p50() and mic_p90() - updated AMR intro
2025-02-23 11:18:08 +01:00
as.mo.Rd
(v2.1.1.9186) replace antibiotics with antimicrobials!
2025-03-07 20:43:26 +01:00
as.sir.Rd
(v2.1.1.9225) fix geom_hline()/_vline() in MIC plotting, add EUCAT 1.2 in full, add London contribs, fix mo codes, add Kleb pneu complex
2025-03-26 17:19:17 +01:00
atc_online.Rd
(v2.1.1.9186) replace antibiotics with antimicrobials!
2025-03-07 20:43:26 +01:00
av_from_text.Rd
(v2.1.1.9126) implemented WISCA! Also added top_n_microorganisms() and fixed Python wrapper
2025-01-26 23:01:17 +01:00
av_property.Rd
(v2.1.1.9186) replace antibiotics with antimicrobials!
2025-03-07 20:43:26 +01:00
availability.Rd
make rsi work in more cases, documentation update
2023-02-22 14:38:57 +01:00
bug_drug_combinations.Rd
(v2.1.1.9186) replace antibiotics with antimicrobials!
2025-03-07 20:43:26 +01:00
clinical_breakpoints.Rd
(v2.1.1.9198) support eucast expert rules 14 and 13.1
2025-03-14 10:10:35 +01:00
count.Rd
(v2.1.1.9190) antibiotics deprecation in antibiogram()
2025-03-09 10:41:11 +01:00
custom_eucast_rules.Rd
(v2.1.1.9225) fix geom_hline()/_vline() in MIC plotting, add EUCAT 1.2 in full, add London contribs, fix mo codes, add Kleb pneu complex
2025-03-26 17:19:17 +01:00
dosage.Rd
(v2.1.1.9186) replace antibiotics with antimicrobials!
2025-03-07 20:43:26 +01:00
eucast_rules.Rd
(v2.1.1.9225) fix geom_hline()/_vline() in MIC plotting, add EUCAT 1.2 in full, add London contribs, fix mo codes, add Kleb pneu complex
2025-03-26 17:19:17 +01:00
example_isolates_unclean.Rd
(v2.1.1.9186) replace antibiotics with antimicrobials!
2025-03-07 20:43:26 +01:00
example_isolates.Rd
(v2.1.1.9186) replace antibiotics with antimicrobials!
2025-03-07 20:43:26 +01:00
export_ncbi_biosample.Rd
(v2.1.1.9126) implemented WISCA! Also added top_n_microorganisms() and fixed Python wrapper
2025-01-26 23:01:17 +01:00
first_isolate.Rd
(v2.1.1.9141) new AMR selectors, eucast overwrite arg
2025-02-07 18:01:22 +01:00
g.test.Rd
new SDD and N for as.sir()
2024-05-20 15:27:04 +02:00
get_episode.Rd
update NEWS
2023-03-11 14:43:31 +01:00
ggplot_pca.Rd
(v2.1.1.9126) implemented WISCA! Also added top_n_microorganisms() and fixed Python wrapper
2025-01-26 23:01:17 +01:00
ggplot_sir.Rd
(v2.1.1.9186) replace antibiotics with antimicrobials!
2025-03-07 20:43:26 +01:00
guess_ab_col.Rd
(v2.1.1.9186) replace antibiotics with antimicrobials!
2025-03-07 20:43:26 +01:00
intrinsic_resistant.Rd
(v2.1.1.9186) replace antibiotics with antimicrobials!
2025-03-07 20:43:26 +01:00
italicise_taxonomy.Rd
Added support for 'html' in italicize_taxonomy() (#134)
2024-02-13 13:47:07 +01:00
join.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
key_antimicrobials.Rd
(v2.1.1.9186) replace antibiotics with antimicrobials!
2025-03-07 20:43:26 +01:00
kurtosis.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
like.Rd
fix documentation
2023-03-16 08:55:37 +01:00
mdro.Rd
(v2.1.1.9225) fix geom_hline()/_vline() in MIC plotting, add EUCAT 1.2 in full, add London contribs, fix mo codes, add Kleb pneu complex
2025-03-26 17:19:17 +01:00
mean_amr_distance.Rd
(v2.1.1.9125) replace 'antibiotic selectors' with 'antimicrobial selectors'
2025-01-17 12:09:39 +01:00
microorganisms.codes.Rd
(v2.1.1.9081) HUGE microorganisms update for fungi!
2024-09-29 22:17:56 +02:00
microorganisms.groups.Rd
(v2.1.1.9225) fix geom_hline()/_vline() in MIC plotting, add EUCAT 1.2 in full, add London contribs, fix mo codes, add Kleb pneu complex
2025-03-26 17:19:17 +01:00
microorganisms.Rd
(v2.1.1.9225) fix geom_hline()/_vline() in MIC plotting, add EUCAT 1.2 in full, add London contribs, fix mo codes, add Kleb pneu complex
2025-03-26 17:19:17 +01:00
mo_matching_score.Rd
(v2.1.1.9186) replace antibiotics with antimicrobials!
2025-03-07 20:43:26 +01:00
mo_property.Rd
(v2.1.1.9186) replace antibiotics with antimicrobials!
2025-03-07 20:43:26 +01:00
mo_source.Rd
(v2.1.1.9126) implemented WISCA! Also added top_n_microorganisms() and fixed Python wrapper
2025-01-26 23:01:17 +01:00
pca.Rd
(v2.1.1.9126) implemented WISCA! Also added top_n_microorganisms() and fixed Python wrapper
2025-01-26 23:01:17 +01:00
plot.Rd
(v2.1.1.9186) replace antibiotics with antimicrobials!
2025-03-07 20:43:26 +01:00
proportion.Rd
(v2.1.1.9190) antibiotics deprecation in antibiogram()
2025-03-09 10:41:11 +01:00
random.Rd
(v2.1.1.9049) new 2024 breakpoints, add AMO, set NI instead of N
2024-06-14 22:39:01 +02:00
resistance_predict.Rd
(v2.1.1.9126) implemented WISCA! Also added top_n_microorganisms() and fixed Python wrapper
2025-01-26 23:01:17 +01:00
skewness.Rd
documentation, unit tests
2023-01-24 10:20:27 +01:00
top_n_microorganisms.Rd
(v2.1.1.9163) cleanup
2025-02-27 14:04:29 +01:00
translate.Rd
(v2.1.1.9079) fix for uti in as.sir()
2024-09-24 15:34:12 +02:00
WHOCC.Rd
new Norwegian link
2024-03-03 23:24:57 +01:00
WHONET.Rd
(v2.1.1.9186) replace antibiotics with antimicrobials!
2025-03-07 20:43:26 +01:00