dr. M.S. (Matthijs) BerendsandClaude Opus 5.5 e7e58f24f9 (v3.0.1.9101) Fix Aerococcus, Pasteurella and N. meningitidis interpretive rules (#290) ...

- Aerococcus rules now use `one_of`, so multi-species rules (breakpoints v12 onwards) apply
- Pasteurella rules filed under Neisseria meningitidis moved to their own rule
- Pasteurella rules now apply on genus level

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

2026-10-04 19:46:41 +02:00

..

aa_amr-package.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

aa_globals.R

(v3.0.1.9089) Remove old expert rules that conflict with expected resistant phenotypes

2026-09-03 15:53:29 +02:00

aa_helper_functions.R

(v3.0.1.9090) unit test

2026-09-04 19:47:30 +02:00

aa_helper_pm_functions.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

aa_options.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

ab_from_text.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

ab_property.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

ab.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

age.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

amr_course.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

amr_selectors.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

antibiogram.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

atc_online.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

av_from_text.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

av_property.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

av.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

availability.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

bug_drug_combinations.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

count.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

custom_antimicrobials.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

custom_interpretive_rules.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

custom_mdro_guideline.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

custom_microorganisms.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

data.R

EUCAST import: blocking rows, note restrictions, PK-PD and parser fixes (#310)

2026-10-02 06:01:58 +02:00

disk.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

export_biosample.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

first_isolate.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

g.test.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

get_episode.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

ggplot_pca.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

ggplot_sir.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

guess_ab_col.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

interpretive_rules.R

(v3.0.1.9091) unit test

2026-09-08 15:02:07 +02:00

italicise_taxonomy.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

join_microorganisms.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

key_antimicrobials.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

kurtosis.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

like.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

mdro.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

mean_amr_distance.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

mic.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

mo_matching_score.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

mo_property.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

mo_source.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

mo.R

(v3.0.1.9097) Never remove released taxa; link orthographic variants; registry line in NEWS

2026-10-03 14:15:08 +02:00

pca.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

plotting.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

proportion.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

random.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

resistance_predict.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

sir_calc.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

sir_df.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

sir.R

implement EUCAST >= 2019 directly from their source files

2026-10-01 14:53:00 +01:00

skewness.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

sysdata.rda

(v3.0.1.9101) Fix Aerococcus, Pasteurella and N. meningitidis interpretive rules (#290)

2026-10-04 19:46:41 +02:00

tidymodels.R

implement EUCAST >= 2019 directly from their source files

2026-10-01 14:53:00 +01:00

top_n_microorganisms.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

translate.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

vctrs.R

implement EUCAST >= 2019 directly from their source files

2026-10-01 14:53:00 +01:00

whocc.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

zz_deprecated.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00

zzz.R

new eucast breakpoints parsing

2026-08-20 13:29:16 +01:00