mirror of
https://github.com/msberends/AMR.git
synced 2024-12-26 06:06:12 +01:00
32 lines
1.9 KiB
R
32 lines
1.9 KiB
R
% Generated by roxygen2: do not edit by hand
|
|
% Please edit documentation in R/data.R
|
|
\docType{data}
|
|
\name{example_isolates}
|
|
\alias{example_isolates}
|
|
\title{Data set with 2,000 example isolates}
|
|
\format{A \code{\link{data.frame}} with 2,000 observations and 49 variables:
|
|
\itemize{
|
|
\item \code{date}\cr date of receipt at the laboratory
|
|
\item \code{hospital_id}\cr ID of the hospital, from A to D
|
|
\item \code{ward_icu}\cr logical to determine if ward is an intensive care unit
|
|
\item \code{ward_clinical}\cr logical to determine if ward is a regular clinical ward
|
|
\item \code{ward_outpatient}\cr logical to determine if ward is an outpatient clinic
|
|
\item \code{age}\cr age of the patient
|
|
\item \code{gender}\cr gender of the patient
|
|
\item \code{patient_id}\cr ID of the patient
|
|
\item \code{mo}\cr ID of microorganism created with \code{\link[=as.mo]{as.mo()}}, see also \link{microorganisms}
|
|
\item \code{PEN:RIF}\cr 40 different antibiotics with class \code{\link{rsi}} (see \code{\link[=as.rsi]{as.rsi()}}); these column names occur in the \link{antibiotics} data set and can be translated with \code{\link[=ab_name]{ab_name()}}
|
|
}}
|
|
\usage{
|
|
example_isolates
|
|
}
|
|
\description{
|
|
A data set containing 2,000 microbial isolates with their full antibiograms. The data set reflects reality and can be used to practice AMR analysis. For examples, please read \href{https://msberends.gitlab.io/AMR/articles/AMR.html}{the tutorial on our website}.
|
|
}
|
|
\section{Read more on our website!}{
|
|
|
|
On our website \url{https://msberends.gitlab.io/AMR} you can find \href{https://msberends.gitlab.io/AMR/articles/AMR.html}{a comprehensive tutorial} about how to conduct AMR analysis, the \href{https://msberends.gitlab.io/AMR/reference}{complete documentation of all functions} (which reads a lot easier than here in R) and \href{https://msberends.gitlab.io/AMR/articles/WHONET.html}{an example analysis using WHONET data}.
|
|
}
|
|
|
|
\keyword{datasets}
|