AMR/data-raw/whonet_remaps_reviewed.csv

1	code	whonet_name	mo_old	name_old	mo_new	name_new	assessment	reviewed
2	104	Salmonella Typhimurium DT 104	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_HMRM	Salmonella Typhimurium	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
3	AAN	Acinetobacter anitratus	B_ACNTB_VNTN	Acinetobacter venetianus	B_ACNTB	Acinetobacter	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
4	ADU	Agchylostoma duodenale	AN_ANCYL	Ancylostoma	AN_ANCYL_DDNL	Ancylostoma duodenale	Old spelling of Ancylostoma duodenale (name fix in script); old was the genus	TRUE
5	AFB	Acid fast bacilli	B_ACDFR	Acidiferrobacter	UNKNOWN	(unknown name)	WHONET name is no taxon in microorganisms; old was an unrelated fuzzy match, now UNKNOWN	TRUE
6	AFN	Aphanoascus fulvescens	F_APHNS_RTCL	Aphanoascus reticulispora	F_APHNS_FLVS	Aphanoascus fulvescens	New is the exact WHONET name; old was an unrelated fuzzy match or another species	TRUE
7	AKI	Sarocladium kiliense	F_ACRMN	Acremonium	F_SRCLD_KLNS	Sarocladium kiliense	New is the exact WHONET name; old was an unrelated fuzzy match or another species	TRUE
8	APK	Trueperella pyogenes-like bacteria	B_AMYCS	Actinomyces	B_TRPRL	Trueperella	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
9	APM	Anaplasma mesaeterum	B_ANPLS_PHGC	Anaplasma phagocytophilum	B_ANPLS	Anaplasma	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
10	ARF	Xenoacremonium recifei	F_ACRMN	Acremonium	F_XNCRM_RECF	Xenoacremonium recifei	New is the exact WHONET name; old was an unrelated fuzzy match or another species	TRUE
11	ART	Arthrographis sp.	B_ARTHR	Arthrobacter	F_ARPHS	Arthrographis	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
12	ASC	Ascaris sp.	B_ACRCM	Acaricomes	AN_ASCRS	Ascaris	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
13	AVH	Aerococcus viridans var. homari	B_AERCC_VRDN	Aerococcus viridans	B_AERCC	Aerococcus	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
14	BCL	Balantidium coli	B_BCLLS	Bacillus	C_BNTDM_COLI	Balantidium coli	New is the exact WHONET name; old was an unrelated fuzzy match or another species	TRUE
15	BFG	Bacteroides fragilis group	B_BCTRD_FRGL	Bacteroides fragilis	B_BCTRD_FRGL-C	Bacteroides fragilis complex	WHONET group is the B. fragilis complex; old was the species	TRUE
16	BLA	Blastomyces sp.	F_CSPRM	Chrysosporium	F_BLSTM	Blastomyces	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
17	BOS	Borrelia suilla	B_BORRL_SPLM	Borrelia spielmanii	B_BORRL	Borrelia	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
18	C2C	Flavobacterium group IIc	B_ELZBT_MNNG	Elizabethkingia meningoseptica	B_FLVBC	Flavobacterium	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
19	C2E	Flavobacterium group IIe	B_SPHNGB_SPRT	Sphingobacterium spiritivorum	B_FLVBC	Flavobacterium	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
20	C2H	Flavobacterium group IIh	B_ELZBT_MNNG	Elizabethkingia meningoseptica	B_FLVBC	Flavobacterium	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
21	C2I	Flavobacterium group IIi	B_SPHNGB_SPRT	Sphingobacterium spiritivorum	B_FLVBC	Flavobacterium	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
22	CAE	Papiliotrema laurentii	F_CRYPT	Cryptococcus	F_PPLTR_LRNT	Papiliotrema laurentii	New is the exact WHONET name; old was an unrelated fuzzy match or another species	TRUE
23	CCI	Trichomonascus ciferrii	F_CANDD	Candida	F_TNSCS_CFRR	Trichomonascus ciferrii	New is the exact WHONET name; old was an unrelated fuzzy match or another species	TRUE
24	CCT	Diutina catenulata	F_CANDD	Candida	F_DIUTN_CTNL	Diutina catenulata	New is the exact WHONET name; old was an unrelated fuzzy match or another species	TRUE
25	CGA	Goffeauzyma gastrica	F_GFFZY	Goffeauzyma	F_GFFZY_GSTR	Goffeauzyma gastrica	New is the exact WHONET name; old was an unrelated fuzzy match or another species	TRUE
26	CHD	Chlamydophila sp.	B_CHLMY	Chlamydia	B_CPHLA	Chlamydophila	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
27	CHU	Vanrija humicola	F_CANDD	Candida	F_VANRJ_HMCL	Vanrija humicola	New is the exact WHONET name; old was an unrelated fuzzy match or another species	TRUE
28	CKR	Issatchenkia orientalis	F_ISSTC_BRMP	Issatchenkia brumptii	F_ISSTC_ORNT	Issatchenkia orientalis	New is the exact WHONET name; old was an unrelated fuzzy match or another species	TRUE
29	CLI	Hathewaya limosa	B_HTHWY	Hathewaya	B_HTHWY_LIMS	Hathewaya limosa	New is the exact WHONET name; old was an unrelated fuzzy match or another species	TRUE
30	CLL	Hannaella luteola	F_HNNLL_ALBA	Hannaella alba	F_HNNLL_LUTL	Hannaella luteola	New is the exact WHONET name; old was an unrelated fuzzy match or another species	TRUE
31	CME	Chilomastix mesnili	P_CHLMS_MTLL	Chilomastix motellae	P_CHLMS	Chilomastix	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
32	CNA	Clostridium novyi type A	B_CTRDM_NNTL	Clostridium neonatale	B_CTRDM_NOVY	Clostridium novyi	Clostridium novyi type A; old was an unrelated species (C. neonatale)	TRUE
33	CNB	Clostridium novyi type B	B_CTRDM_NNTL	Clostridium neonatale	B_CTRDM_NOVY	Clostridium novyi	Clostridium novyi type B; old was an unrelated species (C. neonatale)	TRUE
34	COP	Salmonella Copenhagen	B_SLMNL_CLNDL	Salmonella Colindale	B_SLMNL	Salmonella	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
35	CPH	Capillaria philippinensis	AN_CPLLR_RKNS	Capillaria riukiuensis	AN_CPLLR	Capillaria	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
36	CPR	Ajellomyces crescens	F_CANDD_ASCL	Candida ascalaphidarum	UNKNOWN	(unknown name)	WHONET name is no taxon in microorganisms; old was an unrelated fuzzy match, now UNKNOWN	TRUE
37	CRU	Diutina rugosa	F_CANDD	Candida	F_DIUTN_RUGS	Diutina rugosa	New is the exact WHONET name; old was an unrelated fuzzy match or another species	TRUE
38	CTU	Solicoccozyma terrea	F_SLCCC_ALBD	Solicoccozyma albidus	F_SLCCC_TERR	Solicoccozyma terrea	New is the exact WHONET name; old was an unrelated fuzzy match or another species	TRUE
39	DCA	Taenia canina	AN_TAENI_SGNT	Taenia saginata	AN_TAENI	Taenia	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
40	DIP	Dipetalonema sp.	AN_DPHYL	Diphyllobothrium	UNKNOWN	(unknown name)	WHONET name is no taxon in microorganisms; old was an unrelated fuzzy match, now UNKNOWN	TRUE
41	EAT	Enterobacter catenibacterium	B_KLYVR_INTR	Kluyvera intermedia	B_ENTRBC	Enterobacter	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
42	ERO	Exophiala rostratum	F_EXPHL_PRST	Exophiala prostantherae	F_EXPHL	Exophiala	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
43	FAC	Fasciolopsis sp.	B_FCKLM	Facklamia	AN_FSCLP	Fasciolopsis	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
44	FDI	Bisifusarium dimerum	F_BSFSR_AQDC	Bisifusarium aquaeductuum	F_BSFSR_DMRM	Bisifusarium dimerum	New is the exact WHONET name; old was an unrelated fuzzy match or another species	TRUE
45	FPL	Francisella tularensis biovar palearctica	B_FRNCS_TLRN_HLRC	Francisella tularensis holarctica	B_FRNCS_TLRN	Francisella tularensis	Biovar palearctica is subsp. holarctica, so old was more specific but not wrong; new is the species	TRUE
46	G51	Salmonella Group 51 (O:51)	B_SLMNL_GRPA	Salmonella Group A	B_SLMNL	Salmonella	Salmonella O-group not in microorganisms; old was another group, now Salmonella	TRUE
47	G52	Salmonella Group 52 (O:52)	B_SLMNL_GRPA	Salmonella Group A	B_SLMNL	Salmonella	Salmonella O-group not in microorganisms; old was another group, now Salmonella	TRUE
48	G53	Salmonella Group 53 (O:53)	B_SLMNL_GRPA	Salmonella Group A	B_SLMNL	Salmonella	Salmonella O-group not in microorganisms; old was another group, now Salmonella	TRUE
49	G54	Salmonella Group 54 (O:54)	B_SLMNL_GRPA	Salmonella Group A	B_SLMNL	Salmonella	Salmonella O-group not in microorganisms; old was another group, now Salmonella	TRUE
50	G55	Salmonella Group 55 (O:55)	B_SLMNL_GRPA	Salmonella Group A	B_SLMNL	Salmonella	Salmonella O-group not in microorganisms; old was another group, now Salmonella	TRUE
51	G56	Salmonella Group 56 (O:56)	B_SLMNL_GRPA	Salmonella Group A	B_SLMNL	Salmonella	Salmonella O-group not in microorganisms; old was another group, now Salmonella	TRUE
52	G57	Salmonella Group 57 (O:57)	B_SLMNL_GRPA	Salmonella Group A	B_SLMNL	Salmonella	Salmonella O-group not in microorganisms; old was another group, now Salmonella	TRUE
53	G58	Salmonella Group 58 (O:58)	B_SLMNL_GRPA	Salmonella Group A	B_SLMNL	Salmonella	Salmonella O-group not in microorganisms; old was another group, now Salmonella	TRUE
54	G59	Salmonella Group 59 (O:59)	B_SLMNL_GRPA	Salmonella Group A	B_SLMNL	Salmonella	Salmonella O-group not in microorganisms; old was another group, now Salmonella	TRUE
55	G60	Salmonella Group 60 (O:60)	B_SLMNL_GRPA	Salmonella Group A	B_SLMNL	Salmonella	Salmonella O-group not in microorganisms; old was another group, now Salmonella	TRUE
56	G61	Salmonella Group 61 (O:61)	B_SLMNL_GRPA	Salmonella Group A	B_SLMNL	Salmonella	Salmonella O-group not in microorganisms; old was another group, now Salmonella	TRUE
57	G62	Salmonella Group 62 (O:62)	B_SLMNL_GRPA	Salmonella Group A	B_SLMNL	Salmonella	Salmonella O-group not in microorganisms; old was another group, now Salmonella	TRUE
58	G63	Salmonella Group 63 (O:63)	B_SLMNL_GRPA	Salmonella Group A	B_SLMNL	Salmonella	Salmonella O-group not in microorganisms; old was another group, now Salmonella	TRUE
59	G64	Salmonella Group 64 (O:64)	B_SLMNL_GRPA	Salmonella Group A	B_SLMNL	Salmonella	Salmonella O-group not in microorganisms; old was another group, now Salmonella	TRUE
60	G65	Salmonella Group 65 (O:65)	B_SLMNL_GRPA	Salmonella Group A	B_SLMNL	Salmonella	Salmonella O-group not in microorganisms; old was another group, now Salmonella	TRUE
61	G66	Salmonella Group 66 (O:66)	B_SLMNL_GRPA	Salmonella Group A	B_SLMNL	Salmonella	Salmonella O-group not in microorganisms; old was another group, now Salmonella	TRUE
62	G67	Salmonella Group 67 (O:67)	B_SLMNL_GRPA	Salmonella Group A	B_SLMNL	Salmonella	Salmonella O-group not in microorganisms; old was another group, now Salmonella	TRUE
63	GPE	Dipodascus klebahnii	F_DDSCS_LCTS	Dipodascus lactis	F_DDSCS_KLBH	Dipodascus klebahnii	New is the exact WHONET name; old was an unrelated fuzzy match or another species	TRUE
64	GRI	Salmonella Group I (O:16)	B_SLMNL_GRPA	Salmonella Group A	B_SLMNL	Salmonella	Salmonella O-group not in microorganisms; old was another group, now Salmonella	TRUE
65	GRJ	Salmonella Group J (O:17)	B_SLMNL_GRPA	Salmonella Group A	B_SLMNL	Salmonella	Salmonella O-group not in microorganisms; old was another group, now Salmonella	TRUE
66	GRK	Salmonella Group K (O:18)	B_SLMNL_GRPA	Salmonella Group A	B_SLMNL	Salmonella	Salmonella O-group not in microorganisms; old was another group, now Salmonella	TRUE
67	GRL	Salmonella Group L (O:21)	B_SLMNL_GRPA	Salmonella Group A	B_SLMNL	Salmonella	Salmonella O-group not in microorganisms; old was another group, now Salmonella	TRUE
68	GRM	Salmonella Group M (O:28)	B_SLMNL_GRPA	Salmonella Group A	B_SLMNL	Salmonella	Salmonella O-group not in microorganisms; old was another group, now Salmonella	TRUE
69	GRN	Salmonella Group N (O:30)	B_SLMNL_GRPA	Salmonella Group A	B_SLMNL	Salmonella	Salmonella O-group not in microorganisms; old was another group, now Salmonella	TRUE
70	GRO	Salmonella Group O (O:35)	B_SLMNL_GRPA	Salmonella Group A	B_SLMNL	Salmonella	Salmonella O-group not in microorganisms; old was another group, now Salmonella	TRUE
71	GRP	Salmonella Group P (O:38)	B_SLMNL_GRPA	Salmonella Group A	B_SLMNL	Salmonella	Salmonella O-group not in microorganisms; old was another group, now Salmonella	TRUE
72	GRQ	Salmonella Group Q (O:39)	B_SLMNL_GRPA	Salmonella Group A	B_SLMNL	Salmonella	Salmonella O-group not in microorganisms; old was another group, now Salmonella	TRUE
73	GRR	Salmonella Group R (O:40)	B_SLMNL_GRPA	Salmonella Group A	B_SLMNL	Salmonella	Salmonella O-group not in microorganisms; old was another group, now Salmonella	TRUE
74	GRS	Salmonella Group S (O:41)	B_SLMNL_GRPA	Salmonella Group A	B_SLMNL	Salmonella	Salmonella O-group not in microorganisms; old was another group, now Salmonella	TRUE
75	GRT	Salmonella Group T (O:42)	B_SLMNL_GRPA	Salmonella Group A	B_SLMNL	Salmonella	Salmonella O-group not in microorganisms; old was another group, now Salmonella	TRUE
76	GRU	Salmonella Group U (O:43)	B_SLMNL_GRPA	Salmonella Group A	B_SLMNL	Salmonella	Salmonella O-group not in microorganisms; old was another group, now Salmonella	TRUE
77	GRV	Salmonella Group V (O:44)	B_SLMNL_GRPA	Salmonella Group A	B_SLMNL	Salmonella	Salmonella O-group not in microorganisms; old was another group, now Salmonella	TRUE
78	GRW	Salmonella Group W (O:45)	B_SLMNL_GRPA	Salmonella Group A	B_SLMNL	Salmonella	Salmonella O-group not in microorganisms; old was another group, now Salmonella	TRUE
79	GRX	Salmonella Group X (O:47)	B_SLMNL_GRPA	Salmonella Group A	B_SLMNL	Salmonella	Salmonella O-group not in microorganisms; old was another group, now Salmonella	TRUE
80	GRY	Salmonella Group Y (O:48)	B_SLMNL_GRPA	Salmonella Group A	B_SLMNL	Salmonella	Salmonella O-group not in microorganisms; old was another group, now Salmonella	TRUE
81	GRZ	Salmonella Group Z (O:50)	B_SLMNL_GRPA	Salmonella Group A	B_SLMNL	Salmonella	Salmonella O-group not in microorganisms; old was another group, now Salmonella	TRUE
82	HAU	Haemonchus sp.	F_HNDRS_ASTR	Hendersonula astragalina	UNKNOWN	(unknown name)	WHONET name is no taxon in microorganisms; old was an unrelated fuzzy match, now UNKNOWN	TRUE
83	HDI	Taenia diminuta	AN_TAENI_SGNT	Taenia saginata	AN_TAENI_DMNT	Taenia diminuta	New is the exact WHONET name; old was an unrelated fuzzy match or another species	TRUE
84	HPO	Ogataea polymorpha	F_OGATA	Ogataea	F_OGATA_PLYM	Ogataea polymorpha	New is the exact WHONET name; old was an unrelated fuzzy match or another species	TRUE
85	HSP	Hanseniaspora sp.	F_HNDRS_ASTR	Hendersonula astragalina	F_HNSNS	Hanseniaspora	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
86	IND	Salmonella Indiana	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_INDN	Salmonella Indiana	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
87	INF	Salmonella Infantis	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_INFN	Salmonella Infantis	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
88	ISA	Salmonella Isangi	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_ISNG	Salmonella Isangi	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
89	JAV	Salmonella Paratyphi B var. Java	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_PRTB	Salmonella Paratyphi B	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
90	LAR	Salmonella Larochelle	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_LRCH	Salmonella Larochelle	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
91	LAU	Legionella interrogans serovar autumnalis	B_LGNLL_PNMP	Legionella pneumophila	B_LPTSP_INTR	Leptospira interrogans	WHONET writes Legionella for Leptospira; old was Legionella, now Leptospira interrogans	TRUE
92	LBA	Legionella interrogans serovar ballum	B_LGNLL_PNMP_PSCL	Legionella pneumophila pascullei	B_LPTSP_INTR	Leptospira interrogans	WHONET writes Legionella for Leptospira; old was Legionella, now Leptospira interrogans	TRUE
93	LBT	Legionella interrogans serovar bataviae	B_LGNLL_PNMP_PSCL	Legionella pneumophila pascullei	B_LPTSP_INTR	Leptospira interrogans	WHONET writes Legionella for Leptospira; old was Legionella, now Leptospira interrogans	TRUE
94	LCC	Legionella interrogans serovar canicola	B_LGNLL_PNMP	Legionella pneumophila	B_LPTSP_INTR	Leptospira interrogans	WHONET writes Legionella for Leptospira; old was Legionella, now Leptospira interrogans	TRUE
95	LDO	Leishmania donovani	P_LSHMN_LNSN	Leishmania lainsoni	P_LSHMN_DNVN	Leishmania donovani	New is the exact WHONET name; old was an unrelated fuzzy match or another species	TRUE
96	LET	Lecythophora sp.	B_LPTTR	Leptotrichia	F_LCYTH	Lecythophora	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
97	LGP	Legionella interrogans serovar grippotyphosa	B_LGNLL_ANIS	Legionella anisa	B_LPTSP_INTR	Leptospira interrogans	WHONET writes Legionella for Leptospira; old was Legionella, now Leptospira interrogans	TRUE
98	LIC	Legionella interrogans serovar icterohaemorrhagiae	B_LGNLL_ANIS	Legionella anisa	B_LPTSP_INTR	Leptospira interrogans	WHONET writes Legionella for Leptospira; old was Legionella, now Leptospira interrogans	TRUE
99	LOM	Salmonella Lomita	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_LOMT	Salmonella Lomita	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
100	LPR	Leishmania peruviana	P_LSHMN_MXCN	Leishmania mexicana	P_LSHMN_PRVN	Leishmania peruviana	New is the exact WHONET name; old was an unrelated fuzzy match or another species	TRUE
101	MCO	Paraphyton cookei	F_MCRSP	Microsporum	F_PRPHY_COOK	Paraphyton cookei	New is the exact WHONET name; old was an unrelated fuzzy match or another species	TRUE
102	MPO	Moraxella mima polymorpha (var. oxidans)	B_MRXLL_CTRR	Moraxella catarrhalis	B_MRXLL	Moraxella	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
103	MYE	Mycobacterium caprae	B_EPRYT_SUIS	Eperythrozoon suis	B_MYCBC_CAPR	Mycobacterium caprae	New is the exact WHONET name; old was an unrelated fuzzy match or another species	TRUE
104	MYM	Myxozyma melibiosi	F_MYXZY	Myxozyma	F_MYXZY_MLBS	Myxozyma melibiosi	New is the exact WHONET name; old was an unrelated fuzzy match or another species	TRUE
105	MYS	Mycobacterium suricattae	B_MYCBC_SRRC	Mycobacterium sarraceniae	B_MYCBC	Mycobacterium	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
106	NPE	Neisseria subflava biovar perflava	B_NESSR_ELNG	Neisseria elongata	B_NESSR_SBFL	Neisseria subflava	Neisseria subflava biovar; old was another species (N. elongata)	TRUE
107	NRC	Anaerococcus sp.	B_ANRCC_HYDR	Anaerococcus hydrogenalis	B_ANRCC	Anaerococcus	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
108	NSB	Neisseria subflava biovar subflava	B_NESSR_ELNG	Neisseria elongata	B_NESSR_SBFL	Neisseria subflava	Neisseria subflava biovar; old was another species (N. elongata)	TRUE
109	OCH	Ochrobactrum sp.	B_BRCLL	Brucella	B_OCHRB	Ochrobactrum	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
110	OCR	Ochroconis sp.	F_SCLCB	Scolecobasidium	F_OCHRC	Ochroconis	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
111	PAR	Parasite	B_PRCCC	Paracoccus	UNKNOWN	(unknown name)	WHONET name is no taxon in microorganisms; old was an unrelated fuzzy match, now UNKNOWN	TRUE
112	PAU	Salmonella Saintpaul	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_SNTP	Salmonella Saintpaul	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
113	PG1	Pseudomonas sp. group 1	B_PSDMN_PRFN	Pseudomonas profundi	B_PSDMN	Pseudomonas	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
114	PHO	Phocanema sp.	F_PHOMA	Phoma	UNKNOWN	(unknown name)	WHONET name is no taxon in microorganisms; old was an unrelated fuzzy match, now UNKNOWN	TRUE
115	POT	Salmonella Potsdam	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_PTSD	Salmonella Potsdam	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
116	PRC	Prototheca sp.	F_PICHI_MMBR	Pichia membranifaciens	UNKNOWN	(unknown name)	WHONET name is no taxon in microorganisms; old was an unrelated fuzzy match, now UNKNOWN	TRUE
117	PSA	Pseudallescheria sp.	F_SCDSP	Scedosporium	F_PSDLL	Pseudallescheria	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
118	PSS	Passalurus sp.	B_PSDSC	Pseudescherichia	UNKNOWN	(unknown name)	WHONET name is no taxon in microorganisms; old was an unrelated fuzzy match, now UNKNOWN	TRUE
119	PTY	Salmonella Paratyphi	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_PRTY	Salmonella Paratyphi	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
120	REU	Ralstonia euphora	B_CPRVD_RSPR	Cupriavidus respiraculi	B_RLSTN	Ralstonia	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
121	RMI	Cystobasidium minutum	F_RHDTR	Rhodotorula	F_CYSTBS_MNTM	Cystobasidium minutum	New is the exact WHONET name; old was an unrelated fuzzy match or another species	TRUE
122	RO4	Roseomonas genomospecies 4	B_RSMNS_GLRD_ROSE	Roseomonas gilardii rosea	B_RSMNS	Roseomonas	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
123	RO5	Roseomonas genomospecies 5	B_RSMNS_GLRD_ROSE	Roseomonas gilardii rosea	B_RSMNS	Roseomonas	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
124	RO6	Roseomonas genomospecies 6	B_RSMNS_GLRD_ROSE	Roseomonas gilardii rosea	B_RSMNS	Roseomonas	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
125	SAA	Salmonella Paratyphi A	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_PRTA	Salmonella Paratyphi A	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
126	SAB	Salmonella Paratyphi B	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_PRTB	Salmonella Paratyphi B	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
127	SAC	Salmonella Paratyphi C	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_PRTC	Salmonella Paratyphi C	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
128	SAM	Salmonella Typhimurium	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_HMRM	Salmonella Typhimurium	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
129	SAT	Salmonella Typhi	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_TYPH	Salmonella Typhi	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
130	SBV	Streptococcus bovis-variant	B_STRPT_EQNS	Streptococcus equinus	B_STRPT	Streptococcus	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
131	SDM	Neoscytalidium dimidiatum	F_SCYTL	Scytalidium	F_NSCYT_DMDT	Neoscytalidium dimidiatum	New is the exact WHONET name; old was an unrelated fuzzy match or another species	TRUE
132	SHG	Salmonella Heidelberg	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_HDLB	Salmonella Heidelberg	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
133	SHR	Salmonella Hadar	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_HADR	Salmonella Hadar	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
134	SJV	Salmonella Javiana	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_JAVN	Salmonella Javiana	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
135	SKA	Salmonella Kaapstad	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_KPST	Salmonella Kaapstad	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
136	SKD	Salmonella Kedougou	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_KEDG	Salmonella Kedougou	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
137	SKE	Salmonella Kentucky	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_KNTC	Salmonella Kentucky	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
138	SKO	Salmonella Kottbus	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_KTTB	Salmonella Kottbus	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
139	SKR	Salmonella Krefeld	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_KRFL	Salmonella Krefeld	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
140	SLA	Salmonella Anatum	B_SLMNL_AMNT	Salmonella Aminatu	B_SLMNL	Salmonella	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
141	SLI	Salmonella Litchfield	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_LTCH	Salmonella Litchfield	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
142	SLO	Salmonella London	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_LONDN	Salmonella London	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
143	SLV	Salmonella Livingstone	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_LVNG	Salmonella Livingstone	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
144	SLX	Salmonella Lexington	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_LXNG	Salmonella Lexington	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
145	SMB	Salmonella Mbandaka	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_MBND	Salmonella Mbandaka	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
146	SMH	Salmonella Manhattan	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_MNHT	Salmonella Manhattan	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
147	SMN	Salmonella Muenchen	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_MCHN	Salmonella Muenchen	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
148	SMO	Salmonella Montevideo	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_MNTV	Salmonella Montevideo	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
149	SMR	Salmonella Muenster	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL	Salmonella	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
150	SNA	Salmonella Narashino	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_NRSH	Salmonella Narashino	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
151	SNE	Salmonella Newport	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_NWPR	Salmonella Newport	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
152	SOH	Salmonella Ohio	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL	Salmonella	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
153	SOI	Salmonella Orion	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_ORIN	Salmonella Orion	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
154	SOR	Salmonella Oranienburg	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_ORNN	Salmonella Oranienburg	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
155	SOU	Salmonella Ouakam	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_OUKM	Salmonella Ouakam	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
156	SPG	Streptomyces paraguayensis	B_SMYCS_ASNS	Streptomyces asoensis	B_SMYCS	Streptomyces	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
157	SPM	Salmonella Panama	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_PANM	Salmonella panama	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
158	SPO	Salmonella Poona	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_POON	Salmonella Poona	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
159	SRE	Salmonella Reading	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_RDNG	Salmonella Reading	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
160	SRI	Salmonella Rissen	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_RSSN	Salmonella Rissen	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
161	SRM	Spirillum minus	B_SPRLLM_VLTN	Spirillum volutans	B_SPRLLM	Spirillum	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
162	SRO	Salmonella sp. (rough)	B_SLMNL_BRGH	Salmonella Broughton	B_SLMNL	Salmonella	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
163	SS1	Streptococcus sanguinis I	B_STRPT_GRPI	Streptococcus Group I	B_STRPT_SNGN	Streptococcus sanguinis	Streptococcus sanguinis I; old was Streptococcus Group I (Lancefield), which is unrelated	TRUE
164	SSD	Salmonella Sandiego	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_SDGO	Salmonella Sandiego	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
165	SSE	Salmonella Senftenberg	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_SNFT	Salmonella Senftenberg	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
166	SSW	Salmonella Schwarzengrund	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_SRND	Salmonella Schwarzengrund	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
167	SSY	Salmonella Stanley	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_STNL	Salmonella Stanley	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
168	STL	Stemphylium sp.	AN_STRNG	Strongyloides	F_SHYLM	Stemphylium	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
169	STS	Salmonella Typhisuis	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_THSS	Salmonella Typhisuis	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
170	STY	Salmonella sp., typhoidal	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL	Salmonella	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
171	SVC	Salmonella Typhimurium var. Copenhagen	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_HMRM	Salmonella Typhimurium	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
172	SVG	Salmonella Virginia	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_VRGN	Salmonella Virginia	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
173	SVR	Salmonella Virchow	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_VRCH	Salmonella Virchow	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
174	SWD	Salmonella Wandsworth	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_WNDS	Salmonella Wandsworth	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
175	SWE	Salmonella Weltevreden	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_WLTV	Salmonella Weltevreden	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
176	SWO	Salmonella Worthington	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_WRTH	Salmonella Worthington	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
177	SWY	Salmonella Weybridge	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_WYBR	Salmonella Weybridge	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
178	TAL	Tatlockia sp.	B_LGNLL	Legionella	B_TTLCK	Tatlockia	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
179	TBE	Geotrichum beigelii	F_GTRCH_NDDM	Geotrichum candidum	F_GTRCH	Geotrichum	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
180	TCA	Debaryomyces hansenii	F_DBRYM_CHVL	Debaryomyces chevalieri	F_DBRYM_HNSN	Debaryomyces hansenii	New is the exact WHONET name; old was an unrelated fuzzy match or another species	TRUE
181	TCT	Treponema carateum	B_GRCLN_CLDR	Gracilinema caldarium	B_TRPNM	Treponema	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
182	TEN	Treponema pallidum ss. endemicum	B_TRPNM_PRLS	Treponema paraluiscuniculi	B_TRPNM_PLLD_ENDM	Treponema pallidum endemicum	Treponema pallidum subsp. endemicum; old was another species	TRUE
183	THM	Salmonella Thompson	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_THMP	Salmonella Thompson	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
184	THO	Trichomonas hominis	P_THMNS_VAG	Trichomonas vaginalis	P_THMNS	Trichomonas	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
185	TMU	Cutaneotrichosporon mucoides	F_CTNTR_HVNN	Cutaneotrichosporon heveanensis	F_CTNTR_MCDS	Cutaneotrichosporon mucoides	New is the exact WHONET name; old was an unrelated fuzzy match or another species	TRUE
186	TNS	Salmonella Tennessee	B_SLMNL_ENTR_ENTR	Salmonella enterica enterica	B_SLMNL_TNNS	Salmonella Tennessee	Salmonella serovar now specific; old was S. enterica subsp. enterica	TRUE
187	TPA	Treponema pallidum ss. pallidum	B_TRPNM_PRLS	Treponema paraluiscuniculi	B_TRPNM_PLLD	Treponema pallidum	Treponema pallidum subsp. pallidum (nominate subspecies, so the species); old was another species	TRUE
188	TPI	Kazachstania telluris	F_KZCHS	Kazachstania	F_KZCHS_TLLR	Kazachstania telluris	New is the exact WHONET name; old was an unrelated fuzzy match or another species	TRUE
189	TPP	Treponema pallidum ss. pertenue	B_TRPNM_SCRN_PRDS	Treponema socranskii paredis	B_TRPNM_PLLD_PRTN	Treponema pallidum pertenue	Treponema pallidum subsp. pertenue; old was another species	TRUE
190	TPU	Tausonia pullulans	F_TAUSN	Tausonia	F_TAUSN_PLLL	Tausonia pullulans	New is the exact WHONET name; old was an unrelated fuzzy match or another species	TRUE
191	TRF	Treponema refringens	B_TRPNM_SCRN_PRDS	Treponema socranskii paredis	B_TRPNM	Treponema	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
192	TRG	Trypanosoma congolense	P_TRYPN_SNGL	Trypanosoma senegalense	P_TRYPN	Trypanosoma	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
193	TRH	Trypanosoma brucei ss. rhodesiense	F_TRCHD	Trichoderma	P_TRYPN_BRUC	Trypanosoma brucei	Trypanosoma brucei subsp. rhodesiense is not in microorganisms, so the species; old was Trichoderma	TRUE
194	TRV	Trypanosoma vivax	P_TRYPN_AVIM	Trypanosoma avium	P_TRYPN	Trypanosoma	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
195	TYE	Trypanosoma evansi	P_TRYPN_JNSN	Trypanosoma janseni	P_TRYPN	Trypanosoma	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
196	ULO	Ulocladium sp.	F_ALTRN	Alternaria	F_ULCLD	Ulocladium	WHONET name not in microorganisms (except genus); old was a fuzzy match to another taxon, now genus only	TRUE
197	VAG	Vaginal flora	B_VGCCC	Vagococcus	UNKNOWN	(unknown name)	WHONET name is no taxon in microorganisms; old was an unrelated fuzzy match, now UNKNOWN	TRUE
198	XEN	Candidatus Xenohaliotis sp.	B_XNRHB	Xenorhabdus	UNKNOWN	(unknown name)	WHONET name is no taxon in microorganisms; old was an unrelated fuzzy match, now UNKNOWN	TRUE
199	XEP	No enteric pathogens found	B_XNPHL	Xenophilus	UNKNOWN	(unknown name)	WHONET name is no taxon in microorganisms; old was an unrelated fuzzy match, now UNKNOWN	TRUE