AMR/tests/testthat/test-deprecated.R

42 lines
2.1 KiB
R

# ==================================================================== #
# TITLE #
# Antimicrobial Resistance (AMR) Analysis #
# #
# SOURCE #
# https://gitlab.com/msberends/AMR #
# #
# LICENCE #
# (c) 2019 Berends MS (m.s.berends@umcg.nl), Luz CF (c.f.luz@umcg.nl) #
# #
# This R package is free software; you can freely use and distribute #
# it for both personal and commercial purposes under the terms of the #
# GNU General Public License version 2.0 (GNU GPL-2), as published by #
# the Free Software Foundation. #
# #
# This R package was created for academic research and was publicly #
# released in the hope that it will be useful, but it comes WITHOUT #
# ANY WARRANTY OR LIABILITY. #
# Visit our website for more info: https://msberends.gitlab.io/AMR. #
# ==================================================================== #
context("deprecated.R")
test_that("deprecated functions work", {
# first 5 chars of official name
expect_equal(suppressWarnings(as.character(as.atc(c("nitro", "cipro")))),
c("J01XE01", "J01MA02"))
# EARS-Net
expect_equal(suppressWarnings(as.character(as.atc("AMX"))),
"J01CA04")
expect_equal(suppressWarnings(guess_ab_col(data.frame(AMP_ND10 = "R",
AMC_ED20 = "S"),
as.atc("augmentin"))),
"AMC_ED20")
expect_identical(suppressWarnings(p.symbol(seq(0, 1, 0.001))),
p_symbol(seq(0, 1, 0.001)))
})