AMR/R
Dr. Matthijs Berends f065945d7b
Update clinical breakpoints and fix some `as.mo()` bugs (#117)
* Updates clinical breakpoints EUCAST/CLSI 2023, fixes #102, fixes #112, fixes #113, fixes #114, fixes #115
* docs
* implement ecoffs
* unit tests
2023-06-22 15:10:59 +02:00
..
aa_amr-package.R Update clinical breakpoints and fix some `as.mo()` bugs (#117) 2023-06-22 15:10:59 +02:00
aa_globals.R Update clinical breakpoints and fix some `as.mo()` bugs (#117) 2023-06-22 15:10:59 +02:00
aa_helper_functions.R documentation update 2023-05-27 10:39:22 +02:00
aa_helper_pm_functions.R documentation update 2023-05-27 10:39:22 +02:00
aa_options.R Update clinical breakpoints and fix some `as.mo()` bugs (#117) 2023-06-22 15:10:59 +02:00
ab.R documentation update 2023-05-27 10:39:22 +02:00
ab_from_text.R documentation update 2023-05-27 10:39:22 +02:00
ab_property.R documentation update 2023-05-27 10:39:22 +02:00
ab_selectors.R Update clinical breakpoints and fix some `as.mo()` bugs (#117) 2023-06-22 15:10:59 +02:00
age.R documentation update 2023-05-27 10:39:22 +02:00
antibiogram.R documentation update 2023-05-27 10:39:22 +02:00
atc_online.R documentation update 2023-05-27 10:39:22 +02:00
av.R documentation update 2023-05-27 10:39:22 +02:00
av_from_text.R documentation update 2023-05-27 10:39:22 +02:00
av_property.R documentation update 2023-05-27 10:39:22 +02:00
availability.R documentation update 2023-05-27 10:39:22 +02:00
bug_drug_combinations.R documentation update 2023-05-27 10:39:22 +02:00
count.R documentation update 2023-05-27 10:39:22 +02:00
custom_antimicrobials.R documentation update 2023-05-27 10:39:22 +02:00
custom_eucast_rules.R documentation update 2023-05-27 10:39:22 +02:00
custom_microorganisms.R documentation update 2023-05-27 10:39:22 +02:00
data.R Update clinical breakpoints and fix some `as.mo()` bugs (#117) 2023-06-22 15:10:59 +02:00
disk.R documentation update 2023-05-27 10:39:22 +02:00
eucast_rules.R Update clinical breakpoints and fix some `as.mo()` bugs (#117) 2023-06-22 15:10:59 +02:00
first_isolate.R documentation update 2023-05-27 10:39:22 +02:00
g.test.R documentation update 2023-05-27 10:39:22 +02:00
get_episode.R documentation update 2023-05-27 10:39:22 +02:00
ggplot_pca.R documentation update 2023-05-27 10:39:22 +02:00
ggplot_sir.R documentation update 2023-05-27 10:39:22 +02:00
guess_ab_col.R documentation update 2023-05-27 10:39:22 +02:00
italicise_taxonomy.R documentation update 2023-05-27 10:39:22 +02:00
join_microorganisms.R documentation update 2023-05-27 10:39:22 +02:00
key_antimicrobials.R documentation update 2023-05-27 10:39:22 +02:00
kurtosis.R documentation update 2023-05-27 10:39:22 +02:00
like.R documentation update 2023-05-27 10:39:22 +02:00
mdro.R documentation update 2023-05-27 10:39:22 +02:00
mean_amr_distance.R documentation update 2023-05-27 10:39:22 +02:00
mic.R documentation update 2023-05-27 10:39:22 +02:00
mo.R Update clinical breakpoints and fix some `as.mo()` bugs (#117) 2023-06-22 15:10:59 +02:00
mo_matching_score.R documentation update 2023-05-27 10:39:22 +02:00
mo_property.R documentation update 2023-05-27 10:39:22 +02:00
mo_source.R documentation update 2023-05-27 10:39:22 +02:00
pca.R documentation update 2023-05-27 10:39:22 +02:00
plot.R documentation update 2023-05-27 10:39:22 +02:00
proportion.R documentation update 2023-05-27 10:39:22 +02:00
random.R Update clinical breakpoints and fix some `as.mo()` bugs (#117) 2023-06-22 15:10:59 +02:00
resistance_predict.R documentation update 2023-05-27 10:39:22 +02:00
sir.R Update clinical breakpoints and fix some `as.mo()` bugs (#117) 2023-06-22 15:10:59 +02:00
sir_calc.R documentation update 2023-05-27 10:39:22 +02:00
sir_df.R documentation update 2023-05-27 10:39:22 +02:00
skewness.R documentation update 2023-05-27 10:39:22 +02:00
sysdata.rda unit testing R4.3 2023-05-26 20:37:00 +02:00
translate.R documentation update 2023-05-27 10:39:22 +02:00
vctrs.R documentation update 2023-05-27 10:39:22 +02:00
whocc.R documentation update 2023-05-27 10:39:22 +02:00
zz_deprecated.R documentation update 2023-05-27 10:39:22 +02:00
zzz.R Update clinical breakpoints and fix some `as.mo()` bugs (#117) 2023-06-22 15:10:59 +02:00