mirror of https://github.com/msberends/AMR.git
65 lines
2.8 KiB
R
65 lines
2.8 KiB
R
# ==================================================================== #
|
|
# TITLE #
|
|
# Antimicrobial Resistance (AMR) Analysis #
|
|
# #
|
|
# SOURCE #
|
|
# https://gitlab.com/msberends/AMR #
|
|
# #
|
|
# LICENCE #
|
|
# (c) 2019 Berends MS (m.s.berends@umcg.nl), Luz CF (c.f.luz@umcg.nl) #
|
|
# #
|
|
# This R package is free software; you can freely use and distribute #
|
|
# it for both personal and commercial purposes under the terms of the #
|
|
# GNU General Public License version 2.0 (GNU GPL-2), as published by #
|
|
# the Free Software Foundation. #
|
|
# #
|
|
# This R package was created for academic research and was publicly #
|
|
# released in the hope that it will be useful, but it comes WITHOUT #
|
|
# ANY WARRANTY OR LIABILITY. #
|
|
# Visit our website for more info: https://msberends.gitlab.io/AMR. #
|
|
# ==================================================================== #
|
|
|
|
context("age.R")
|
|
|
|
test_that("age works", {
|
|
expect_equal(age(x = c("1980-01-01", "1985-01-01", "1990-01-01"),
|
|
reference = "2019-01-01"),
|
|
c(39, 34, 29))
|
|
|
|
expect_equal(age(x = c("2019-01-01", "2019-04-01", "2019-07-01"),
|
|
reference = "2019-09-01",
|
|
exact = TRUE),
|
|
c(0.6656393, 0.4191781, 0.1698630),
|
|
tolerance = 0.001)
|
|
|
|
expect_error(age(x = c("1980-01-01", "1985-01-01", "1990-01-01"),
|
|
reference = c("2019-01-01", "2019-01-01")))
|
|
|
|
expect_warning(age(x = c("1980-01-01", "1985-01-01", "1990-01-01"),
|
|
reference = "1975-01-01"))
|
|
|
|
expect_warning(age(x = c("1800-01-01", "1805-01-01", "1810-01-01"),
|
|
reference = "2019-01-01"))
|
|
})
|
|
|
|
test_that("age_groups works", {
|
|
ages <- c(3, 8, 16, 54, 31, 76, 101, 43, 21)
|
|
|
|
expect_equal(length(unique(age_groups(ages, 50))),
|
|
2)
|
|
expect_equal(length(unique(age_groups(ages, c(50, 60)))),
|
|
3)
|
|
expect_identical(class(age_groups(ages, "child")),
|
|
c("ordered", "factor"))
|
|
|
|
expect_identical(class(age_groups(ages, "elderly")),
|
|
c("ordered", "factor"))
|
|
|
|
expect_identical(class(age_groups(ages, "tens")),
|
|
c("ordered", "factor"))
|
|
|
|
expect_identical(class(age_groups(ages, "fives")),
|
|
c("ordered", "factor"))
|
|
|
|
})
|