AMR/data-raw/_language_update.R

96 lines
3.9 KiB
R

# ==================================================================== #
# TITLE #
# AMR: An R Package for Working with Antimicrobial Resistance Data #
# #
# SOURCE #
# https://github.com/msberends/AMR #
# #
# CITE AS #
# Berends MS, Luz CF, Friedrich AW, Sinha BNM, Albers CJ, Glasner C #
# (2022). AMR: An R Package for Working with Antimicrobial Resistance #
# Data. Journal of Statistical Software, 104(3), 1-31. #
# doi:10.18637/jss.v104.i03 #
# #
# Developed at the University of Groningen, the Netherlands, in #
# collaboration with non-profit organisations Certe Medical #
# Diagnostics & Advice, and University Medical Center Groningen. #
# #
# This R package is free software; you can freely use and distribute #
# it for both personal and commercial purposes under the terms of the #
# GNU General Public License version 2.0 (GNU GPL-2), as published by #
# the Free Software Foundation. #
# We created this package for both routine data analysis and academic #
# research and it was publicly released in the hope that it will be #
# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. #
# #
# Visit our website for the full manual and a complete tutorial about #
# how to conduct AMR data analysis: https://msberends.github.io/AMR/ #
# ==================================================================== #
# Run this file to update the languages used in the packages:
# source("data-raw/_language_update.R")
if (!file.exists("DESCRIPTION") || !"Package: AMR" %in% readLines("DESCRIPTION")) {
stop("Be sure to run this script in the root location of the AMR package folder.\n",
"Working directory expected to contain the DESCRIPTION file of the AMR package.\n",
"Current working directory: ", getwd(),
call. = FALSE
)
}
# save old global env to restore later
lang_env <- new.env(hash = FALSE)
# load current internal data into new env
load("R/sysdata.rda", envir = lang_env)
# replace language objects with updates
message("Reading translation file...")
lang_env$TRANSLATIONS <- utils::read.delim(
file = "data-raw/translations.tsv",
sep = "\t",
stringsAsFactors = FALSE,
header = TRUE,
blank.lines.skip = TRUE,
fill = TRUE,
strip.white = TRUE,
encoding = "UTF-8",
fileEncoding = "UTF-8",
na.strings = c(NA, "", NULL),
allowEscapes = TRUE, # else "\\1" will be imported as "\\\\1"
quote = ""
)
lang_env$LANGUAGES_SUPPORTED_NAMES <- c(
list(en = list(exonym = "English", endonym = "English")),
lapply(
lang_env$TRANSLATIONS[, which(nchar(colnames(lang_env$TRANSLATIONS)) == 2), drop = FALSE],
function(x) list(exonym = x[1], endonym = x[2])
)
)
lang_env$LANGUAGES_SUPPORTED <- names(lang_env$LANGUAGES_SUPPORTED_NAMES)
# save env to internal package data
# usethis::use_data() does not allow to save a list :(
message("Saving to internal data...")
save(
list = names(lang_env),
file = "R/sysdata.rda",
ascii = FALSE,
version = 2,
compress = "xz",
envir = lang_env
)
rm(lang_env)
if ("roxygen2" %in% utils::installed.packages()) {
message("Updating package documentation...")
suppressMessages(roxygen2::roxygenise(package.dir = "."))
} else {
message("NOTE: please install the roxygen2 package to update package documentation, and run this script again.")
}
message("Done!")