mirror of
https://github.com/msberends/AMR.git
synced 2024-12-25 18:46:11 +01:00
41 lines
2.3 KiB
R
41 lines
2.3 KiB
R
% Generated by roxygen2: do not edit by hand
|
|
% Please edit documentation in R/data.R
|
|
\docType{data}
|
|
\name{antibiotics}
|
|
\alias{antibiotics}
|
|
\title{Data set with 423 antibiotics}
|
|
\format{A \code{\link{data.frame}} with 423 observations and 18 variables:
|
|
\describe{
|
|
\item{\code{atc}}{ATC code, like \code{J01CR02}}
|
|
\item{\code{certe}}{Certe code, like \code{amcl}}
|
|
\item{\code{umcg}}{UMCG code, like \code{AMCL}}
|
|
\item{\code{abbr}}{Abbreviation as used by many countries, used internally by \code{\link{as.atc}}}
|
|
\item{\code{official}}{Official name by the WHO, like \code{"Amoxicillin and beta-lactamase inhibitor"}}
|
|
\item{\code{official_nl}}{Official name in the Netherlands, like \code{"Amoxicilline met enzymremmer"}}
|
|
\item{\code{trivial_nl}}{Trivial name in Dutch, like \code{"Amoxicilline/clavulaanzuur"}}
|
|
\item{\code{trade_name}}{Trade name as used by many countries (a total of 294), used internally by \code{\link{as.atc}}}
|
|
\item{\code{oral_ddd}}{Defined Daily Dose (DDD), oral treatment}
|
|
\item{\code{oral_units}}{Units of \code{ddd_units}}
|
|
\item{\code{iv_ddd}}{Defined Daily Dose (DDD), parenteral treatment}
|
|
\item{\code{iv_units}}{Units of \code{iv_ddd}}
|
|
\item{\code{atc_group1}}{ATC group, like \code{"Macrolides, lincosamides and streptogramins"}}
|
|
\item{\code{atc_group2}}{Subgroup of \code{atc_group1}, like \code{"Macrolides"}}
|
|
\item{\code{atc_group1_nl}}{ATC group in Dutch, like \code{"Macroliden, lincosamiden en streptograminen"}}
|
|
\item{\code{atc_group2_nl}}{Subgroup of \code{atc_group1} in Dutch, like \code{"Macroliden"}}
|
|
\item{\code{useful_gramnegative}}{\code{FALSE} if not useful according to EUCAST, \code{NA} otherwise (see Source)}
|
|
\item{\code{useful_grampositive}}{\code{FALSE} if not useful according to EUCAST, \code{NA} otherwise (see Source)}
|
|
}}
|
|
\source{
|
|
- World Health Organization: \url{https://www.whocc.no/atc_ddd_index/} \cr - EUCAST - Expert rules intrinsic exceptional V3.1 \cr - MOLIS (LIS of Certe): \url{https://www.certe.nl} \cr - GLIMS (LIS of UMCG): \url{https://www.umcg.nl}
|
|
}
|
|
\usage{
|
|
antibiotics
|
|
}
|
|
\description{
|
|
A data set containing all antibiotics with a J0 code and some other antimicrobial agents, with their DDDs. Except for trade names and abbreviations, all properties were downloaded from the WHO, see Source.
|
|
}
|
|
\seealso{
|
|
\code{\link{microorganisms}}
|
|
}
|
|
\keyword{datasets}
|