mirror of
https://github.com/msberends/AMR.git
synced 2024-12-25 18:46:11 +01:00
78 lines
2.9 KiB
R
78 lines
2.9 KiB
R
% Generated by roxygen2: do not edit by hand
|
|
% Please edit documentation in R/age.R
|
|
\name{age_groups}
|
|
\alias{age_groups}
|
|
\title{Split ages into age groups}
|
|
\usage{
|
|
age_groups(x, split_at = c(12, 25, 55, 75))
|
|
}
|
|
\arguments{
|
|
\item{x}{age, e.g. calculated with \code{\link{age}}}
|
|
|
|
\item{split_at}{values to split \code{x} at, defaults to age groups 0-11, 12-24, 26-54, 55-74 and 75+. See Details.}
|
|
}
|
|
\value{
|
|
Ordered \code{\link{factor}}
|
|
}
|
|
\description{
|
|
Split ages into age groups defined by the \code{split} parameter. This allows for easier demographic (antimicrobial resistance) analysis.
|
|
}
|
|
\details{
|
|
To split ages, the input can be:
|
|
\itemize{
|
|
\item{A numeric vector. A vector of e.g. \code{c(10, 20)} will split on 0-9, 10-19 and 20+. A value of only \code{50} will split on 0-49 and 50+.
|
|
The default is to split on young children (0-11), youth (12-24), young adults (26-54), middle-aged adults (55-74) and elderly (75+).}
|
|
\item{A character:}
|
|
\itemize{
|
|
\item{\code{"children"}, equivalent of: \code{c(0, 1, 2, 4, 6, 13, 18)}. This will split on 0, 1, 2-3, 4-5, 6-12, 13-17 and 18+.}
|
|
\item{\code{"elderly"} or \code{"seniors"}, equivalent of: \code{c(65, 75, 85, 95)}. This will split on 0-64, 65-74, 75-84, 85-94 and 95+.}
|
|
\item{\code{"fives"}, equivalent of: \code{1:20 * 5}. This will split on 0-4, 5-9, 10-14, 15-19 and so forth.}
|
|
\item{\code{"tens"}, equivalent of: \code{1:10 * 10}. This will split on 0-9, 10-19, 20-29 and so forth.}
|
|
}
|
|
}
|
|
}
|
|
\section{Read more on our website!}{
|
|
|
|
\if{html}{\figure{logo.png}{options: height=40px style=margin-bottom:5px} \cr}
|
|
On our website \url{https://msberends.gitlab.io/AMR} you can find \href{https://msberends.gitlab.io/AMR/articles/AMR.html}{a comprehensive tutorial} about how to conduct AMR analysis, the \href{https://msberends.gitlab.io/AMR/reference}{complete documentation of all functions} (which reads a lot easier than here in R) and \href{https://msberends.gitlab.io/AMR/articles/WHONET.html}{an example analysis using WHONET data}.
|
|
}
|
|
|
|
\examples{
|
|
ages <- c(3, 8, 16, 54, 31, 76, 101, 43, 21)
|
|
|
|
# split into 0-49 and 50+
|
|
age_groups(ages, 50)
|
|
|
|
# split into 0-19, 20-49 and 50+
|
|
age_groups(ages, c(20, 50))
|
|
|
|
# split into groups of ten years
|
|
age_groups(ages, 1:10 * 10)
|
|
age_groups(ages, split_at = "tens")
|
|
|
|
# split into groups of five years
|
|
age_groups(ages, 1:20 * 5)
|
|
age_groups(ages, split_at = "fives")
|
|
|
|
# split specifically for children
|
|
age_groups(ages, "children")
|
|
# same:
|
|
age_groups(ages, c(1, 2, 4, 6, 13, 17))
|
|
|
|
# resistance of ciprofloxacine per age group
|
|
library(dplyr)
|
|
septic_patients \%>\%
|
|
mutate(first_isolate = first_isolate(.)) \%>\%
|
|
filter(first_isolate == TRUE,
|
|
mo == as.mo("E. coli")) \%>\%
|
|
group_by(age_group = age_groups(age)) \%>\%
|
|
select(age_group,
|
|
cipr) \%>\%
|
|
ggplot_rsi(x = "age_group")
|
|
}
|
|
\seealso{
|
|
\code{\link{age}} to determine ages based on one or more reference dates
|
|
}
|
|
\keyword{age}
|
|
\keyword{age_group}
|