mirror of https://github.com/msberends/AMR.git
70 lines
2.0 KiB
YAML
70 lines
2.0 KiB
YAML
# ==================================================================== #
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# TITLE #
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# Antimicrobial Resistance (AMR) Analysis #
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# #
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# AUTHORS #
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# Berends MS (m.s.berends@umcg.nl), Luz CF (c.f.luz@umcg.nl) #
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# #
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# LICENCE #
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# This package is free software; you can redistribute it and/or modify #
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# it under the terms of the GNU General Public License version 2.0, #
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# as published by the Free Software Foundation. #
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# #
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# This R package is distributed in the hope that it will be useful, #
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# but WITHOUT ANY WARRANTY; without even the implied warranty of #
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the #
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# GNU General Public License version 2.0 for more details. #
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# ==================================================================== #
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# https://r-posts.com/gitlab-ci-for-r-package-development/
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image: rocker/r-base
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stages:
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- setup
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- test
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- deploy
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cache:
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# Ommit key to use the same cache across all pipelines and branches
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key: "$CI_COMMIT_REF_SLUG"
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paths:
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- packrat/lib/
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setup:
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stage: setup
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script:
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- R -e 'source("ci.R"); ci_setup()'
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check:
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stage: test
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dependencies:
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- setup
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when: on_success
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script:
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- R -e 'source("ci.R"); ci_check()'
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coverage:
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stage: test
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dependencies:
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- setup
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when: on_success
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only:
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- master
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script:
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- R -e 'source("ci.R"); ci_coverage()'
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coverage: '/Code coverage: \d+\.\d+/'
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pages:
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stage: deploy
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dependencies:
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- setup
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when: on_success
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only:
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- master
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script:
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- R -e 'source("ci.R"); ci_pages()'
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artifacts:
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paths:
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- public
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