mirror of
https://github.com/msberends/AMR.git
synced 2024-12-28 06:46:11 +01:00
76 lines
2.7 KiB
R
Executable File
76 lines
2.7 KiB
R
Executable File
# ==================================================================== #
|
|
# TITLE #
|
|
# Antimicrobial Resistance (AMR) Analysis #
|
|
# #
|
|
# SOURCE #
|
|
# https://gitlab.com/msberends/AMR #
|
|
# #
|
|
# LICENCE #
|
|
# (c) 2019 Berends MS (m.s.berends@umcg.nl), Luz CF (c.f.luz@umcg.nl) #
|
|
# #
|
|
# This R package is free software; you can freely use and distribute #
|
|
# it for both personal and commercial purposes under the terms of the #
|
|
# GNU General Public License version 2.0 (GNU GPL-2), as published by #
|
|
# the Free Software Foundation. #
|
|
# #
|
|
# This R package was created for academic research and was publicly #
|
|
# released in the hope that it will be useful, but it comes WITHOUT #
|
|
# ANY WARRANTY OR LIABILITY. #
|
|
# Visit our website for more info: https://msberends.gitlab.io/AMR. #
|
|
# ==================================================================== #
|
|
|
|
#' Deprecated functions
|
|
#'
|
|
#' These functions are so-called '[Deprecated]'. They will be removed in a future release. Using the functions will give a warning with the name of the function it has been replaced by (if there is one).
|
|
#' @inheritSection AMR Read more on our website!
|
|
#' @export
|
|
#' @keywords internal
|
|
#' @name AMR-deprecated
|
|
#' @rdname AMR-deprecated
|
|
p.symbol <- function(...) {
|
|
.Deprecated("p_symbol()", package = "AMR")
|
|
AMR::p_symbol(...)
|
|
}
|
|
|
|
#' @rdname AMR-deprecated
|
|
#' @export
|
|
portion_R <- function(...) {
|
|
.Deprecated("resistance()", package = "AMR")
|
|
proportion_R(...)
|
|
}
|
|
|
|
#' @rdname AMR-deprecated
|
|
#' @export
|
|
portion_IR <- function(...) {
|
|
.Deprecated("proportion_IR()", package = "AMR")
|
|
proportion_IR(...)
|
|
}
|
|
|
|
#' @rdname AMR-deprecated
|
|
#' @export
|
|
portion_I <- function(...) {
|
|
.Deprecated("proportion_I()", package = "AMR")
|
|
proportion_I(...)
|
|
}
|
|
|
|
#' @rdname AMR-deprecated
|
|
#' @export
|
|
portion_SI <- function(...) {
|
|
.Deprecated("susceptibility()", package = "AMR")
|
|
proportion_SI(...)
|
|
}
|
|
|
|
#' @rdname AMR-deprecated
|
|
#' @export
|
|
portion_S <- function(...) {
|
|
.Deprecated("proportion_S()", package = "AMR")
|
|
proportion_S(...)
|
|
}
|
|
|
|
#' @rdname AMR-deprecated
|
|
#' @export
|
|
portion_df <- function(...) {
|
|
.Deprecated("proportion_df()", package = "AMR")
|
|
proportion_df(...)
|
|
}
|