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fig:fig1-5
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fig:fig2-2
fig:fig2-3
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ch01-introduction
microbial-epidemiology
antimicrobial-resistance-in-microorganisms
laboratory-diagnostics
interpretation-of-raw-results
multi-drug-resistant-organisms
surveillance-programs
data-analysis-using-r
setting-for-this-thesis
aim-of-this-thesis-and-introduction-to-its-chapters
ch02-diagnostic-stewardship
introduction
case-1
case-2
the-general-concept
diagnostics
dsp-in-the-microbiological-laboratory
dsp-as-process-optimisation
multidisciplinary-aspects-of-dsp-and-infection-management
conclusion
ch03-introducing-new-method
background
standardising-amr-data-analysis
comparison-with-existing-software-methods
user-feedback
conclusion-1
ch04-amr-r-package
introduction-1
antimicrobial-resistance-data
antimicrobial-resistance-data-transformation
working-with-taxonomically-valid-microorganism-names
properties-of-microorganisms
working-with-antimicrobial-names-or-codes
properties-of-antimicrobial-agents
filtering-data-based-on-classes-of-antimicrobial-agents
working-with-antimicrobial-susceptibility-test-results
interpretative-rules-by-eucast
working-with-defined-daily-doses-ddd
enhancing-antimicrobial-resistance-data
determining-first-isolates
determining-multi-drug-resistant-organisms-mdro
multi-drug-resistant-tuberculosis
analysing-antimicrobial-resistance-data
calculation-of-antimicrobial-resistance
counts
proportions
design-decisions
reproducible-example
discussion
ch05-radar
introduction-2
background-1
objectives
methods
results
overview
application-design
development-process
workflow
customisation
discussion-1
principal-findings
conclusions
ch06-radar2
introduction-3
methods-1
study-setup
amr-data
amr-data-analysis-and-reporting
study-participants
study-execution-and-data
evaluation-and-study-data-analysis
results-1
study-participants-1
effectiveness-and-accuracy
efficiency
satisfaction
discussion-2