fig:fig1-1 fig:fig1-2 fig:fig1-3 fig:fig1-4 fig:fig1-5 introduction microbial-epidemiology antimicrobial-resistance-in-microorganisms laboratory-diagnostics interpretation-of-raw-results multi-drug-resistant-organisms surveillance-programs data-analysis-using-r setting-for-this-thesis aim-of-this-thesis-and-introduction-to-its-chapters