diff --git a/kalman/graphics/figure2.py b/kalman/graphics/figure2.py index d7881bf..f9b03f1 100644 --- a/kalman/graphics/figure2.py +++ b/kalman/graphics/figure2.py @@ -43,11 +43,13 @@ def plot_parameters(dat, deparameterize=False, ref=None): plt.ion() - inputfile_path = 'results/aorta/input.yaml' + inputfile_path = 'results/aorta_C/input.yaml' with open(inputfile_path) as file: inputfile = yaml.full_load(file) - true_val = [10,250,250,250,30] + #true_val = [10,250,250,250,30] + true_val = [94,250,683,615,30] + current_val = [] current_val.append(inputfile['boundary_conditions'][2]['value'][0]) current_val.append(inputfile['boundary_conditions'][3]['value'][0]) diff --git a/kalman/input_files/aorta.yaml b/kalman/input_files/aorta.yaml index 6e36f84..84ad1dc 100755 --- a/kalman/input_files/aorta.yaml +++ b/kalman/input_files/aorta.yaml @@ -6,7 +6,7 @@ fluid: dynamic_viscosity: 0.035 io: - write_path: 'results/aorta' + write_path: 'results/aorta_C' restart: path: '' # './projects/nse_coa3d/results/test_restart2/' time: 0 @@ -25,29 +25,38 @@ boundary_conditions: type: 'dirichlet' value: ['0','0','-U*sin(DOLFIN_PI*t/Th)*(t<=Th) + (ThTh)*(-3.67949466208*U*sin(9*DOLFIN_PI*t/Th)*exp(-t*10)) + - U*sin(DOLFIN_PI*(t-Tc)/Th)*(t>Tc)*(t<= Tc + Th) + (t>Tc+Th)*(-3.67949466208*U*sin(9*DOLFIN_PI*(t-Tc)/Th)*exp(-(t-Tc)*10))'] parameters: U: 30 Th: 0.35 + Tc: 0.8 t: 0 - id: 3 type: 'windkessel' - value: [10,1000,0.01] + value: [10,1000,0.01] #paper corr + #value: [94,1794,0.0014] #paper windk + #value: [94,0,0] p0: [47,1333.223874] - id: 4 type: 'windkessel' - value: [250,8000,0.0001] + value: [250,8000,0.0001] #paper corr + #value: [250,10000,0.0004] #paper windk + #value: [250,0,0] #paper p0: [47,1333.223874] - id: 5 type: 'windkessel' - value: [250,8000,0.0001] + value: [250,8000,0.0001] #paper corr + #value: [683,12960,0.0002] #paper windk + #value: [683,0,0] p0: [47,1333.223874] - id: 6 type: 'windkessel' - value: [250,8000,0.0001] + value: [250,8000,0.0001] #paper corr + #value: [615,11664,0.0002] #paper windk + #value: [615,0,0] p0: [47,1333.223874] + timemarching: velocity_pressure_coupling: 'fractionalstep' # monolithic, fractionalstep @@ -72,8 +83,8 @@ timemarching: transpiration_bc_projection: 'robin' # robin, dirichlet flux_report_normalize_boundary: 1 - T: 0.8 # end time - dt: 0.01 + T: 1.6 # end time + dt: 0.001 write_dt: 0.04 checkpoint_dt: 0.04 # <= 0: only last; else value + last report: 1 # 0: print nothing, 1: print time step and writeout, 2: 1 + flux @@ -87,7 +98,7 @@ fem: convection_skew_symmetric: True # aka Temam term stabilization: forced_normal: - enabled: True + enabled: False boundaries: [6] gamma: 10 backflow_boundaries: [3,4,5,6] @@ -111,6 +122,22 @@ linear_solver: estimation: boundary_conditions: + - + id: 3 + type: 'windkessel' + initial_stddev: 1 + #- + # id: 4 + # type: 'windkessel' + # initial_stddev: 1 + #- + # id: 5 + # type: 'windkessel' + # initial_stddev: 1 + #- + # id: 6 + # type: 'windkessel' + # initial_stddev: 1 - id: 2 type: 'dirichlet' @@ -119,15 +146,18 @@ estimation: measurements: - - mesh: './meshes/coaortaH1.h5' + mesh: './meshes/coaortaH3_leo2.0.h5' fe_degree: 1 - xdmf_file: 'results/aorta/measurements/u_all.xdmf' - file_root: 'results/aorta/measurements/u{i}.h5' + xdmf_file: 'measurements/aorta_C/u_all.xdmf' + file_root: 'measurements/aorta_C/u{i}.h5' indices: 0 # indices of checkpoints to be processed. 0 == all velocity_direction: ~ - noise_stddev: 12.5 # standard deviation of Gaussian noise + noise_stddev: 15 # standard deviation of Gaussian noise roukf: particles: 'simplex' # unique or simplex observation_operator: 'postprocessing' #state or postprocessing reparameterize: True + ODV_functional: + enable: False + VENC: 102 # 102,120% 59,70% 42 50%, 21,25% diff --git a/kalman/measurements/aorta/Perturbation/Ks12V120/u.h5 b/kalman/measurements/aorta/Perturbation/Ks12V120/u.h5 deleted file mode 100644 index f7905f7..0000000 Binary files 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a/kalman/measurements/aorta/Perturbation/Ks12V70/u8.h5 and /dev/null differ diff --git a/kalman/measurements/aorta/Perturbation/Ks12V70/u80.h5 b/kalman/measurements/aorta/Perturbation/Ks12V70/u80.h5 deleted file mode 100644 index d6c42ab..0000000 Binary files a/kalman/measurements/aorta/Perturbation/Ks12V70/u80.h5 and /dev/null differ diff --git a/kalman/measurements/aorta/input.yaml b/kalman/measurements/aorta/input.yaml deleted file mode 100755 index e3002bb..0000000 --- a/kalman/measurements/aorta/input.yaml +++ /dev/null @@ -1,155 +0,0 @@ - -mesh: './meshes/coaortaH1.h5' -# Physical parameters of the fluid -fluid: - density: 1.2 - dynamic_viscosity: 0.035 - -io: - write_path: 'results/aorta' - restart: - path: '' # './projects/nse_coa3d/results/test_restart2/' - time: 0 - write_xdmf: True - write_checkpoints: True - write_hdf5_timeseries: False - write_velocity: 'update' # update or tentative - -boundary_conditions: - - - id: 1 - type: 'dirichlet' - value: ['0','0','0'] - - - id: 2 - type: 'dirichlet' - value: ['0','0','-U*sin(DOLFIN_PI*t/Th)*(t<=Th) + (Th - - - - - - - u_all.h5:/Mesh/0/mesh/topology - - - u_all.h5:/Mesh/0/mesh/geometry - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -