#################################################
#
#   Input file for the checkpoint postprocessing
#
#################################################
Algebra:
    apply: false
    mode: '+'
    VENC: 97
    outname: 'ucor'
    outpath: '/home/yeye/Desktop/Corrector_2019/Perturbation/gain/SNR10V60/'
    checkpoint: true
    #meshpath: '/home/yeye/Desktop/Poiseuille/Meas_leo/poiseuille.h5'
    meshpath: '/home/yeye/Desktop/Corrector_2019/Meshes/leoH3_2.0.h5'
    v1:
        name: 'u'
        path: '/home/yeye/Desktop/Corrector_2019/Perturbation/Meas/SNR10V60/'
    v2:
        name: 'w_COR_impl_stan'
        path: '/home/yeye/Desktop/Corrector_2019/Perturbation/COR/SNR10V60/'

Colormap:
    apply: false
    #mode: ['u','w','w/u','div(u)','div(u)/u']
    mode: ['dot']
    outpath: '/home/yeye/Desktop/Poiseuille/H5/leo2mm/SNRinfV80/'
    meshpath: '/home/yeye/Desktop/Poiseuille/Meas_leo/poiseuille.h5'
    upath: '/home/yeye/Desktop/Poiseuille/Meas_leo/SNRinfV80/'
    wpath: '/home/yeye/Desktop/Poiseuille/Corrector/leo2mm/SNRinfV80/'
    uname: 'u'
    wname: 'w_COR_impl_stan'

Velocity:
    apply: false
    meshpath: '/home/yeye/Desktop/Corrector_2019/Poiseuille/poiseuille.h5'
    checkpoint: '/home/yeye/Desktop/Corrector_2019/Poiseuille/COR/SNR15V120/'
    undersampling: 1
    dt: 0.03
    filename: 'w_COR_impl_stan'

Estim_Pressure:
    apply: false
    meshpath: '/home/yeye/Desktop/Corrector_2019/Meshes/9mmRest2.0.h5'
    filename: 'p_COR_impl_stan'
    checkpath: '/home/yeye/Desktop/Corrector_2019/AoCo/9mm_pspg/'
    method: spheres      # slices, boundaries, spheres
    dt: 0.03072
    boundaries: [2,3]
    spheres:
    - center: [0.0980092, 0.0909768, 0.0802258] # 9mm
    #- center: [0.110266, 0.086805, 0.0794744] # 11mm
    #- center    :   [0.0940797, 0.0766444, 0.080433] #13mm
    #- center: [0.0870168, 0.0901715, 0.0883529]  # Normal
      radius: 0.005          
      Npts: 32
    - center: [0.0980092, 0.135047, 0.0252659] # 9mm
    #- center: [0.110266, 0.133002, 0.0263899] # 11mm
    #- center    :   [0.0940573, 0.123321,  0.0260755] # 13 mm
    #- center: [0.0869949, 0.12838, 0.0269889]  # Normal
      radius: 0.005
      Npts: 32

Outlet_Wind:
    apply: false
    mesh_path: '/home/yeye/Desktop/aorta/mesh/aorta_coarse_marked.h5'
    checkpoint: '/home/yeye/Desktop/aorta/results/mono/'
    filename: ['u','p']
    bnds: [3,4,5,6]
    out_path: '/home/yeye/Desktop/aorta/results/mono/'

Error-curves:
    apply: true
    dt: 0.03
    VENC: 204  #194/129/113/97 for aorta(120,80,70,60)/ 204/136
    type: ['utrue-uobs']
    #type: ['l2_comp','div']
    meshpath: '/home/yeye/Desktop/Poiseuille/Meas_leo/poiseuille.h5'
    #meshpath: '/home/yeye/Desktop/Corrector_2019/Meshes/leoH3_2.0.h5'
    true_check: '/home/yeye/Desktop/Poiseuille/Meas_leo/SNRinfV120/'
    true_name: 'u'
    ref_check: '/home/yeye/Desktop/Poiseuille/Meas_leo/SNR10V120/'
    ref_name: 'u'
    undersampling: 1
    com_check: '/home/yeye/Desktop/Poiseuille/Corrector/leo2mm/SNR10V120/'
    com_name: 'w_COR_impl_stan'
    outpath: '/home/yeye/Desktop/Poiseuille/curves/SNR10V120/'

Histograms:
    apply: false
    type: ['normal','grad']
    meshpath: '/home/yeye/Desktop/Corrector_2019/meshes/11AoCoPhantomRest1.4.h5'
    checkpath: '/home/yeye/Desktop/Corrector_2019/I/corrector/11mmRest1.4/'
    field_name: 'w_COR_impl_stan'
    outpath: '/home/yeye/Desktop/Corrector_2019/I/corrector/11mmRest1.4/'

Temporal-Average:
    apply: false
    meshpath: '/home/yeye/Desktop/PhD/AORTA/MESH/coaorta/H1/coaortaH1.h5'
    original_check: '/home/yeye/Desktop/First/H1/dt5ms/coaorta/'
    xdmf: false
    dt: 0.005
    subsampling_rate: 6
    out_check: '/home/yeye/Desktop/First/H1/test/'
    
Temporal-Interpolation:
    apply: false
    meshpath: '/home/yeye/Desktop/Corrector_2019/meshes/11AoCoPhantomRest1.4.h5'
    original_check: '/home/yeye/Desktop/Corrector_2019/I/meas/11mmRest1.4/R1/'
    xdmf: true
    dt: 0.03072
    dt_new: 0.015
    out_check: '/home/yeye/Desktop/Corrector_2019/I/meas/11mmRest1.4/dt15ms/'

Perturbation:
    apply: false
    undersampling: 1
    type:
        SNR: 10 # dB signal to noise ratio
        coil: true
        phase_contrast: 80 # venc % respect u max
    meshpath: '/home/yeye/Desktop/Poiseuille/Meas_leo/poiseuille.h5'
    checkpath: '/home/yeye/Desktop/Poiseuille/Meas_leo/original/'
    xdmf: true