@STRING{camwa	= "Comput. Math. Appl." }
@STRING{camwa	= "Comput. Math. Appl." }
@STRING{cma	= "Comp. Meth. Appl. Mech. Engrg." }
@STRING{cma	= "Comp. Meth. Appl. Mech. Engrg." }
@STRING{ijnme	= "Int. J. Numer. Meth. Engrg." }
@STRING{ijnme	= "Int. J. Numer. Meth. Engrg." }
@STRING{ijnmf	= "Int. J. Numer. Meth. Fluids" }
@STRING{ijnmf	= "Int. J. Numer. Meth. Fluids" }
@STRING{jcma	= "J. Comp. Appl. Math." }
@STRING{jcma	= "J. Comp. Appl. Math." }
@STRING{jcp	= "J. Comp. Phys." }
@STRING{jcp	= "J. Comp. Phys." }
@STRING{jsp	= "J. Stat. Phys." }
@STRING{jsp	= "J. Stat. Phys." }
@STRING{m2an	= " Math. Model. Num. Anal. (M2AN)" }
@STRING{m2an	= " Math. Model. Num. Anal. (M2AN)" }
@STRING{mc	= " Math. Comp." }
@STRING{mc	= " Math. Comp." }
@STRING{pre	= "Phys. Rew. E" }
@STRING{pre	= "Phys. Rew. E" }
@STRING{prl	= "Phys. Rew. Lett." }
@STRING{prl	= "Phys. Rew. Lett." }
@STRING{sisc	= "SIAM J. Sci. Comp." }
@STRING{sisc	= "SIAM J. Sci. Comp." }

@article{Burtschell2017,
  year = {2017},
  month = apr,
  publisher = {Elsevier {BV}},
  volume = {182},
  pages = {313--324},
  author = {Bruno Burtschell and Dominique Chapelle and Philippe Moireau},
  title = {Effective and energy-preserving time discretization for a general nonlinear poromechanical formulation},
  journal = {Computers {\&} Structures}
}


@phdthesis{smaldone2014,
  TITLE = {{Numerical analysis and simulations of coupled problems for the cariovascular system}},
  AUTHOR = {Smaldone, Saverio},
  SCHOOL = {{L'universit{\'e} Pierre et Marie Curie - Paris VI }},
  YEAR = {2014},
  MONTH = Oct,
  TYPE = {Theses},
  HAL_ID = {tel-01287506},
  HAL_VERSION = {v1},
}

@article{Lozovskiy2018,
   year = {2018},
  month = may,
  publisher = {Elsevier {BV}},
  volume = {333},
  pages = {55--73},
  author = {Alexander Lozovskiy and Maxim A. Olshanskii and Yuri V. Vassilevski},
  title = {A quasi-Lagrangian finite element method for the Navier{\textendash}Stokes equations in a time-dependent domain},
  journal = {Computer Methods in Applied Mechanics and Engineering}
}

@article{Hessenthaler2017,
   year = {2017},
  month = feb,
  publisher = {Wiley},
  volume = {33},
  number = {8},
  pages = {e2845},
  author = {Andreas Hessenthaler and Oliver R\"{o}hrle and David Nordsletten},
  title = {Validation of a non-conforming monolithic fluid-structure interaction method using phase-contrast {MRI}},
  journal = {International Journal for Numerical Methods in Biomedical Engineering}
}

@article{Basting2017,
  year = {2017},
  month = feb,
  publisher = {Elsevier {BV}},
  volume = {331},
  pages = {312--336},
  author = {Steffen Basting and Annalisa Quaini and Sun{\v{c}}ica {\v{C}}ani{\'{c}} and Roland Glowinski},
  title = {Extended {ALE} Method for fluid{\textendash}structure interaction problems with large structural displacements},
  journal = {Journal of Computational Physics}
}


@article{manganotti2021coupling,
  title={Coupling reduced-order blood flow and cardiac models through energy-consistent strategies: modeling and discretization},
  author={Manganotti, Jessica and Caforio, Federica and Kimmig, Fran{\c{c}}ois and Moireau, Philippe and Imperiale, S{\'e}bastien},
  journal={Advanced Modeling and Simulation in Engineering Sciences},
  volume={8},
  number={1},
  pages={1--37},
  year={2021},
  publisher={SpringerOpen}
}

@article{piersanti20223d,
  title={3D--0D closed-loop model for the simulation of cardiac biventricular electromechanics},
  author={Piersanti, Roberto and Regazzoni, Francesco and Salvador, Matteo and Corno, Antonio F and Vergara, Christian and Quarteroni, Alfio and others},
  journal={Computer Methods in Applied Mechanics and Engineering},
  volume={391},
  pages={114607},
  year={2022},
  publisher={Elsevier}
}

@article{holzapfel2009constitutive,
  title={Constitutive modelling of passive myocardium: a structurally based framework for material characterization},
  author={Holzapfel, Gerhard A and Ogden, Ray W},
  journal={Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences},
  volume={367},
  number={1902},
  pages={3445--3475},
  year={2009},
  publisher={The Royal Society Publishing}
}

@article{pfaller2020pod,
  title={Using parametric model order reduction for inverse analysis of large nonlinear cardiac simulations},
  author={Pfaller, Martin R and Cruz Varona, Maria and Lang, Johannes and Bertoglio, Crist{\'o}bal and Wall, Wolfgang A},
  journal={International journal for numerical methods in biomedical engineering},
  volume={36},
  number={4},
  pages={e3320},
  year={2020},
  publisher={Wiley Online Library}
}

@article{marchesseau2013regionalvols,
  title={Personalization of a cardiac electromechanical model using reduced order unscented Kalman filtering from regional volumes},
  author={Marchesseau, St{\'e}phanie and Delingette, Herv{\'e} and Sermesant, Maxime and Cabrera-Lozoya, R and Tobon-Gomez, Catalina and Moireau, Philippe and i Ventura, RM Figueras and Lekadir, Karim and Hernandez, Alfredo and Garreau, Mireille and others},
  journal={Medical image analysis},
  volume={17},
  number={7},
  pages={816--829},
  year={2013},
  publisher={Elsevier}
}

@article{chabiniok2012estimation,
  title={Estimation of tissue contractility from cardiac cine-MRI using a biomechanical heart model},
  author={Chabiniok, Radomir and Moireau, Philippe and Lesault, P-F and Rahmouni, Alain and Deux, J-F and Chapelle, Dominique},
  journal={Biomechanics and modeling in mechanobiology},
  volume={11},
  number={5},
  pages={609--630},
  year={2012},
  publisher={Springer}
}

@article{marchesseau2013fast,
  title={Fast parameter calibration of a cardiac electromechanical model from medical images based on the unscented transform},
  author={Marchesseau, St{\'e}phanie and Delingette, Herv{\'e} and Sermesant, Maxime and Ayache, Nicholas},
  journal={Biomechanics and modeling in mechanobiology},
  volume={12},
  number={4},
  pages={815--831},
  year={2013},
  publisher={Springer}
}

@article{imperiale2021tagged,
  title={Sequential data assimilation for mechanical systems with complex image data: application to tagged-MRI in cardiac mechanics},
  author={Imperiale, Alexandre and Chapelle, Dominique and Moireau, Philippe},
  journal={Advanced Modeling and Simulation in Engineering Sciences},
  volume={8},
  number={1},
  pages={1--47},
  year={2021},
  publisher={SpringerOpen}
}

@book{vlachopoulos2011mcdonald,
  title={McDonald's blood flow in arteries: theoretical, experimental and clinical principles},
  author={Vlachopoulos, Charalambos and O'Rourke, Michael and Nichols, Wilmer W},
  year={2011},
  publisher={CRC press}
}

@article{arostica2021monolithic,
  title={On monolithic and Chorin--Temam schemes for incompressible flows in moving domains},
  author={Ar{\'o}stica, Reidmen and Bertoglio, Crist{\'o}bal},
  journal={Applied Mathematics Letters},
  volume={112},
  pages={106830},
  year={2021},
  publisher={Elsevier}
}

@article{de2014catheter,
  title={Catheter-induced errors in pressure measurements in vessels: an in-vitro and numerical study},
  author={de Vecchi, Adelaide and Clough, Rachel E and Gaddum, Nicholas R and Rutten, Marcel CM and Lamata, Pablo and Schaeffter, Tobias and Nordsletten, David A and Smith, Nicolas P},
  journal={IEEE Transactions on Biomedical Engineering},
  volume={61},
  number={6},
  pages={1844--1850},
  year={2014},
  publisher={IEEE}
}

@article{NAKANISHI20123,
title = {Myocardial bridging on coronary CTA: An innocent bystander or a culprit in myocardial infarction?},
journal = {Journal of Cardiovascular Computed Tomography},
volume = {6},
number = {1},
pages = {3-13},
year = {2012},
issn = {1934-5925},
doi = {https://doi.org/10.1016/j.jcct.2011.10.015},
url = {https://www.sciencedirect.com/science/article/pii/S193459251100414X},
author = {Rine Nakanishi and Ronak Rajani and Yukio Ishikawa and Toshiharu Ishii and Daniel S. Berman},
keywords = {Myocardial bridge, Coronary artery, Cardiac computed tomography, Myocardial infarction},
}

@article{aguayo2021oseen,
  title={A distributed resistance inverse method for flow obstacle identification from internal velocity measurements},
  author={Aguayo, Jorge and Bertoglio, Crist{\'o}bal and Osses, Axel},
  journal={Inverse Problems},
  volume={37},
  number={2},
  pages={025010},
  year={2021},
  publisher={IOP Publishing}
}

@article{arthurs2020flexible,
  title={A flexible framework for sequential estimation of model parameters in computational hemodynamics},
  author={Arthurs, Christopher J and Xiao, Nan and Moireau, Philippe and Schaeffter, Tobias and Figueroa, C Alberto},
  journal={Advanced modeling and simulation in engineering sciences},
  volume={7},
  number={1},
  pages={1--37},
  year={2020},
  publisher={SpringerOpen}
}

@article{fevola2021optimal,
  title={An optimal control approach to determine resistance-type boundary conditions from in-vivo data for cardiovascular simulations},
  author={Fevola, Elisa and Ballarin, Francesco and Jim{\'e}nez-Juan, Laura and Fremes, Stephen and Grivet-Talocia, Stefano and Rozza, Gianluigi and Triverio, Piero},
  journal={arXiv preprint arXiv:2104.13284},
  year={2021}
}

@article{pozzi2021surrogate,
  title={A surrogate model for plaque modeling in carotids based on Robin conditions calibrated by cine MRI data},
  author={Pozzi, Silvia and Domanin, Maurizio and Forzenigo, Laura and Votta, Emiliano and Zunino, E and Redaelli, Alberto and Vergara, Christian},
  journal={Int. J. Numer. Methods Biomed. Eng.},
  pages={e3447},
  year={2021}
}

@article{moireau2012external,
  title={External tissue support and fluid--structure simulation in blood flows},
  author={Moireau, Philippe and Xiao, Nan and Astorino, Matteo and Figueroa, C Alberto and Chapelle, Dominique and Taylor, CA and Gerbeau, J-F},
  journal={Biomechanics and modeling in mechanobiology},
  volume={11},
  number={1},
  pages={1--18},
  year={2012},
  publisher={Springer}
}

@book{smith2010introduction,
  title={Introduction to medical imaging: physics, engineering and clinical applications},
  author={Smith, Nadine Barrie and Webb, Andrew},
  year={2010},
  publisher={Cambridge university press}
}

@article{walheim2019multipoint,
  title={Multipoint 5D flow cardiovascular magnetic resonance-accelerated cardiac-and respiratory-motion resolved mapping of mean and turbulent velocities},
  author={Walheim, Jonas and Dillinger, Hannes and Kozerke, Sebastian},
  journal={Journal of Cardiovascular Magnetic Resonance},
  volume={21},
  number={1},
  pages={1--13},
  year={2019},
  publisher={BioMed Central}
}

@book{mcrobbie2017mri,
  title={MRI from Picture to Proton},
  author={McRobbie, Donald W and Moore, Elizabeth A and Graves, Martin J and Prince, Martin R},
  year={2017},
  publisher={Cambridge university press}
}

@article{fleischmann2016cta,
  title={Computed tomography angiography: a review and technical update},
  author={Fleischmann, Dominik and Chin, Anne S and Molvin, Lior and Wang, Jia and Hallett, Richard},
  journal={Radiologic Clinics},
  volume={54},
  number={1},
  pages={1--12},
  year={2016},
  publisher={Elsevier}
}


@article{kumar2021past,
  title={Past, present and future of blood pressure measuring instruments and their calibration},
  author={Kumar, Rahul and Dubey, PK and Zafer, Afaqul and Kumar, Ashok and Yadav, Sanjay},
  journal={Measurement},
  volume={172},
  pages={108845},
  year={2021},
  publisher={Elsevier}
}

@article{babbs2012oscillometric,
  title={Oscillometric measurement of systolic and diastolic blood pressures validated in a physiologic mathematical model},
  author={Babbs, Charles F},
  journal={Biomedical engineering online},
  volume={11},
  number={1},
  pages={1--22},
  year={2012},
  publisher={BioMed Central}
}

@article{quarteroni2016geometric,
  title={Geometric multiscale modeling of the cardiovascular system, between theory and practice},
  author={Quarteroni, Alfio and Veneziani, Alessandro and Vergara, Christian},
  journal={Computer Methods in Applied Mechanics and Engineering},
  volume={302},
  pages={193--252},
  year={2016},
  publisher={Elsevier}
}

@article{perinajova2021geometrically,
  title={Geometrically induced wall shear stress variability in CFD-MRI coupled simulations of blood flow in the thoracic aortas},
  author={Perinajov{\'a}, Romana and Juffermans, Joe F and Westenberg, Jos JM and van der Palen, Roel LF and van den Boogaard, Pieter J and Lamb, Hildo J and Kenjere{\v{s}}, Sa{\v{s}}a},
  journal={Computers in Biology and Medicine},
  pages={104385},
  year={2021},
  publisher={Elsevier}
}

@article{itu2017,
  title={Personalized blood flow computations: A hierarchical parameter estimation framework for tuning boundary conditions},
  author={Itu, Lucian and Sharma, Puneet and Suciu, Constantin and Moldoveanu, Florin and Comaniciu, Dorin},
  journal={International journal for numerical methods in biomedical engineering},
  volume={33},
  number={3},
  pages={e02803},
  year={2017},
  publisher={Wiley Online Library}
}

@article{gerbeau2003quasi,
  title={A quasi-Newton algorithm based on a reduced model for fluid-structure interaction problems in blood flows},
  author={Gerbeau, Jean-Fr{\'e}d{\'e}ric and Vidrascu, Marina},
  journal={ESAIM: Mathematical Modelling and Numerical Analysis},
  volume={37},
  number={4},
  pages={631--647},
  year={2003},
  publisher={EDP Sciences}
}

@article{spilker2010,
  title={Tuning multidomain hemodynamic simulations to match physiological measurements},
  author={Spilker, Ryan L and Taylor, Charles A},
  journal={Annals of biomedical engineering},
  volume={38},
  number={8},
  pages={2635--2648},
  year={2010},
  publisher={Springer}
}

@article{gaidzik2019,
  title={Transient flow prediction in an idealized aneurysm geometry using data assimilation},
  author={Gaidzik, Franziska and Stucht, Daniel and Roloff, Christoph and Speck, Oliver and Th{\'e}venin, Dominique and Janiga, G{\'a}bor},
  journal={Computers in biology and medicine},
  volume={115},
  pages={103507},
  year={2019},
  publisher={Elsevier}
}

@article{gaidzik2020willis,
  title={Hemodynamic Data Assimilation in a Subject-specific Circle of Willis Geometry},
  author={Gaidzik, Franziska and Pathiraja, Sahani and Saalfeld, Sylvia and Stucht, Daniel and Speck, Oliver and Th{\'e}venin, Dominique and Janiga, G{\'a}bor},
  journal={Clinical Neuroradiology},
  pages={1--9},
  year={2020},
  publisher={Springer}
}

@inproceedings{koltukluoglu_harmonic_2019,
  title={Fourier Spectral Dynamic Data Assimilation: Interlacing CFD with 4D Flow MRI},
  author={Koltukluo{\u{g}}lu, Taha Sabri},
  booktitle={International Conference on Medical Image Computing and Computer-Assisted Intervention},
  pages={741--749},
  year={2019},
  organization={Springer}
}

@article{toeger2020mrm,
  title={Blood flow imaging by optimal matching of computational fluid dynamics to 4D-flow data},
  author={T{\"o}ger, Johannes and Zahr, Matthew J and Aristokleous, Nicolas and Markenroth Bloch, Karin and Carlsson, Marcus and Persson, Per-Olof},
  journal={Magnetic Resonance in Medicine},
  year={2020},
  publisher={Wiley Online Library}
}

@article{rispoli2015,
  title={Computational fluid dynamics simulations of blood flow regularized by 3D phase contrast MRI},
  author={Rispoli, Vinicius C and Nielsen, Jon F and Nayak, Krishna S and Carvalho, Joao LA},
  journal={Biomedical engineering online},
  volume={14},
  number={1},
  pages={110},
  year={2015},
  publisher={Springer}
}

@article{delosreyes2009regularizedNSE,
  title={Regularized state-constrained boundary optimal control of the Navier--Stokes equations},
  author={de los Reyes, Juan Carlos and Yousept, Irwin},
  journal={Journal of mathematical analysis and applications},
  volume={356},
  number={1},
  pages={257--279},
  year={2009},
  publisher={Elsevier}
}

@article{guerra_velocity_2014,
  title={Optimal control in blood flow simulations},
  author={Guerra, Telma and Tiago, Jorge and Sequeira, Ad{\'e}lia},
  journal={International Journal of Non-Linear Mechanics},
  volume={64},
  pages={57--69},
  year={2014},
  publisher={Elsevier}
}

@article{backflowBenchmark2018,
  title={Benchmark problems for numerical treatment of backflow at open boundaries},
  author={Bertoglio, Crist{\'o}bal and Caiazzo, Alfonso and Bazilevs, Yuri and Braack, Malte and Esmaily, Mahdi and Gravemeier, Volker and L. Marsden, Alison and Pironneau, Olivier and E. Vignon-Clementel, Irene and A. Wall, Wolfgang},
  journal={International journal for numerical methods in biomedical engineering},
  volume={34},
  number={2},
  pages={e2918},
  year={2018},
  publisher={Wiley Online Library}
}

@article{tiago_2014,
  title={Patient-specific blood flow simulations: setting Dirichlet boundary conditions for minimal error with respect to measured data},
  author={Tiago, Jorge and Gambaruto, Alberto and Sequeira, Adelia},
  journal={Mathematical Modelling of Natural Phenomena},
  volume={9},
  number={6},
  pages={98--116},
  year={2014},
  publisher={EDP Sciences}
}

@article{delia_variational_2010,
  title={Methods for assimilating blood velocity measures in hemodynamics simulations: Preliminary results},
  author={D'Elia, Marta and Veneziani, Alessandro},
  journal={Procedia Computer Science},
  volume={1},
  number={1},
  pages={1231--1239},
  year={2010},
  publisher={Elsevier}
}

@article{bruning2018uncertainty,
  title={Uncertainty quantification for non-invasive assessment of pressure drop across a coarctation of the aorta using CFD},
  author={Br{\"u}ning, Jan and Hellmeier, Florian and Yevtushenko, Pavlo and K{\"u}hne, Titus and Goubergrits, Leonid},
  journal={Cardiovascular engineering and technology},
  volume={9},
  number={4},
  pages={582--596},
  year={2018},
  publisher={Springer}
}


@Unpublished{	  2004_fernandez_lecture_harvard_estimationtheory,
  Author	= {Fern\'andez, M. M.},
  Institution	= {Laboratory of Mathematics in Imaging, Harvard University},
  HowPublished	= {University Lecture},
  Year		= {2004},
  Title		= {Fundamentals on Estimation Theory},
  URL		= {http://lmi.bwh.harvard.edu/papers/pdfs/2004/martin-fernandezCOURSE04b.pdf}
}

@InCollection{	  2011_krueger-etal_fimh11_rbmatria,
  Year		= {2011},
  ISBN		= {978-3-642-21027-3},
  BookTitle	= {Functional Imaging and Modeling of the Heart},
  DOI		= {10.1007/978-3-642-21028-0_28},
  Title		= {Modeling Atrial Fiber Orientation in Patient-Specific
		  Geometries: A Semi-automatic Rule-Based Approach},
  URL		= {http://dx.doi.org/10.1007/978-3-642-21028-0_28},
  Publisher	= {Springer Berlin Heidelberg},
  Keywords	= {patient-specific modeling; atrial modeling; fiber
		  orientation; atrial heterogeneity; atrial anisotropy},
  Author	= {Kr\"uger, M. and Schmidt, V. and Tob\'on, C. and Weber, F.
		  and Lorenz, C. and Keller, D. and Barschdorf, H. and
		  Burdumy, M. and Neher, P. and Plank, G. and Rhode, K. and
		  Seemann, G. and Sanchez-Quintana, D. and Saiz, J. and
		  Razavi, R. and D\"ossel, O.},
  Pages		= {223-232}
}

@Article{	  2012_young_torsion_short,
  Title		= "Ventricular Torsion: An Aid to Ejection?",
  Journal	= "JACC: Cardiovascular Imaging",
  Volume	= "5",
  Number	= "3",
  Pages		= "282 - 284",
  Year		= "2012",
  Note		= "",
  ISSN		= "1936-878X",
  DOI		= "http://dx.doi.org/10.1016/j.jcmg.2011.11.016",
  URL		= "http://www.sciencedirect.com/science/article/pii/S1936878X11009363",
  Author	= "Young, Alistair A.",
  Keywords	= "transverse shear "
}


@phdthesis{failer2017optimal,
  title={Optimal control of time-dependent nonlinear fluid-structure interaction},
  author={Failer, Lukas},
  year={2017},
  school={Technische Universit{\"a}t M{\"u}nchen}
}

@Article{	  abraham2002nejm,
  Title		= {Cardiac resynchronization in chronic heart failure},
  Author	= {Abraham, W.T. and Fisher, W.G. and Smith, A.L. and
		  Delurgio, D.B. and Leon, A.R. and Loh, E. and Kocovic, D.Z.
		  and Packer, M. and Clavell, A.L. and Hayes, D.L. and
		  {others}},
  Journal	= {New England Journal of Medicine},
  Year		= {2002},
  Number	= {24},
  Pages		= {1845--1853},
  Volume	= {346},
  File		= {Abraham_2002.pdf:/home/hoermann/.zotero/zotero/krpbc0h6.default/zotero/storage/V9EPGE8S/Abraham_2002.pdf:application/pdf},
  Keywords	= {CRT},
  URL		= {http://www.nejm.org/doi/full/10.1056/nejmoa013168},
  URLDate	= {2014-11-27}
}

@Article{	  abujudeh2010ajr,
  Title		= {Acute Adverse Reactions to Gadopentetate Dimeglumine and
		  Gadobenate Dimeglumine: Experience With 32,659 Injections},
  Author	= {Abujudeh, Hani H. and Kosaraju, Vijaya K. and Kaewlai,
		  Rathachai},
  Journal	= {American Journal of Roentgenology},
  Year		= {2010},
  Month		= {Feb},
  Number	= {2},
  Pages		= {430--434},
  Volume	= {194},
  DOI		= {10.2214/ajr.09.3099},
  File		= {:Abujudeh2010AJR.pdf:PDF},
  ISSN		= {1546-3141},
  Keywords	= {acute adverse reaction, gadobenate dimeglumine,
		  gadolinium-based contrast agents, gadopentetate
		  dimeglumine},
  Publisher	= {American Roentgen Ray Society},
  URL		= {http://dx.doi.org/10.2214/AJR.09.3099}
}

@Unpublished{	  achdou-bernardi-coquel-01,
  Author	= {Achdou, Y. and Bernardi, C. and Coquel, F.},
  code		= {por16},
  Title		= {A priori and a posteriori analysis of finite volume
		  discretizations of {D}arcy's equations}
}

###Unpublished{	  achdou-bernardi-coquel-01,
  Author	= {Achdou, Y. and Bernardi, C. and Coquel, F.},
  code		= {por16},
  Note		= {Preprint Univ. Paris 6, 2001},
  Title		= {A priori and a posteriori analysis of finite volume
		  discretizations of {D}arcy's equations}
}

@Article{	  achdou-pironneau-valentin-98,
  Author	= {Achdou, Y. and Pironneau, O. and Valentin, F.},
  Journal	= {J. Comp. Phys.},
  Pages		= {187-218},
  Title		= {Effective boundary conditions for laminar flows over
		  periodic rough boundaries},
  Volume	= {147},
  Year		= {1998}
}

###Article{	  achdou-pironneau-valentin-98,
  Author	= {Achdou, Y. and Pironneau, O. and Valentin, F.},
  Journal	= {J. Comp. Phys.},
  Pages		= {187-218},
  Title		= {Effective boundary conditions for laminar flows over
		  periodic rough boundaries},
  Volume	= {147},
  Year		= {1998}
}

@Article{	  adib_new_2017,
  Title		= {A New Concept of Data Assimilation Method between
		  {{PC}}-{{MRI}} Measurement and {{CFD}} Simulation of Blood
		  Flow Analysis on Patient-Specific Cerebral Aneurysm},
  Year		= {2017},
  Author	= {Adib, Mohd and Bin, Mohd Azrul Hisham}
}

@Article{	  aha-circulation-08,
  Author	= "Warnes, C.A. and Williams, R.G. and Bashore, T.M. and
		  Child, J.S. and Connolly, H.M. and Dearani, J.A. and del
		  Nido, P. and Fasules, J.W. and Graham, T.P. and Hijazi,
		  Z.M. and Hunt, S.A. and King, M.E. and Landzberg, M.J. and
		  Miner, P.D. and Radford, M.J. and Walsh, E.P. and Webb,
		  G.D.",
  Title		= "{ACC/AHA 2008 Guidelines for the Management of Adults with
		  Congenital Heart Disease: a report of the American College
		  of Cardiology/American Heart Association Task Force on
		  Practice Guidelines (writing committee to develop
		  guidelines on the management of adults with congenital
		  heart disease)}",
  Journal	= "Circulation",
  Volume	= 118,
  Pages		= "714-833",
  Number	= "1",
  Year		= "2008"
}

###Article{	  aha-circulation-08,
  Author	= "Warnes, C.A. and Williams, R.G. and Bashore, T.M. and
		  Child, J.S. and Connolly, H.M. and Dearani, J.A. and del
		  Nido, P. and Fasules, J.W. and Graham, T.P. and Hijazi,
		  Z.M. and Hunt, S.A. and King, M.E. and Landzberg, M.J. and
		  Miner, P.D. and Radford, M.J. and Walsh, E.P. and Webb,
		  G.D.",
  Title		= "{ACC/AHA 2008 Guidelines for the Management of Adults with
		  Congenital Heart Disease: a report of the American College
		  of Cardiology/American Heart Association Task Force on
		  Practice Guidelines (writing committee to develop
		  guidelines on the management of adults with congenital
		  heart disease)}",
  Journal	= "Circulation",
  Volume	= 118,
  Pages		= "714-833",
  Number	= "1",
  Year		= "2008"
}

###Article{	  aha-circulation-08,
  Author	= "Warnes, C.A. and Williams, R.G. and Bashore, T.M. and
		  Child, J.S. and Connolly, H.M. and Dearani, J.A. and del
		  Nido, P. and Fasules, J.W. and Graham, T.P. and Hijazi,
		  Z.M. and Hunt, S.A. and King, M.E. and Landzberg, M.J. and
		  Miner, P.D. and Radford, M.J. and Walsh, E.P. and Webb,
		  G.D.",
  Title		= "{ACC/AHA 2008 Guidelines for the Management of Adults with
		  Congenital Heart Disease: a report of the American College
		  of Cardiology/American Heart Association Task Force on
		  Practice Guidelines (writing committee to develop
		  guidelines on the management of adults with congenital
		  heart disease)}",
  Journal	= "Circulation",
  Volume	= 118,
  Pages		= "714-833",
  Number	= "1",
  Year		= "2008"
}

@Book{		  ainsworth2011posteriori,
  Title		= {A posteriori error estimation in finite element analysis},
  Author	= {Ainsworth, Mark and Oden, J Tinsley},
  Volume	= {37},
  Year		= {2011},
  Publisher	= {John Wiley \& Sons}
}

@Article{	  akaike1974ieee,
  Title		= {A new look at the statistical model identification},
  Author	= {Akaike, Hirotugu},
  Journal	= "IEEE Trans. Autom. Control",
  Volume	= {19},
  Number	= {6},
  Pages		= {716--723},
  Year		= {1974},
  Publisher	= {Ieee}
}

@Article{	  akrivis2010posteriori,
  Title		= {A posteriori error estimates for the two-step backward
		  differentiation formula method for parabolic equations},
  Author	= {Akrivis, Georgios and Chatzipantelidis, Panagiotis},
  Journal	= {SIAM Journal on Numerical Analysis},
  Volume	= {48},
  Number	= {1},
  Pages		= {109--132},
  Year		= {2010},
  Publisher	= {SIAM}
}

@Article{	  aletras1999jmr,
  Title		= {DENSE: displacement encoding with stimulated echoes in
		  cardiac functional MRI.},
  Author	= {Aletras, A. H. and Ding, S. and Balaban, R. S. and Wen,
		  H.},
  Journal	= {J Magn Reson},
  Year		= {1999},
  Month		= {Mar},
  Number	= {1},
  Pages		= {247--252},
  Volume	= {137},
  Abstract	= {Displacement encoding with stimulated echoes (DENSE) was
		  developed for high-resolution myocardial displacement
		  mapping. Pixel phase is modulated by myocardial
		  displacement and data spatial resolution is limited only by
		  pixel size. 2D displacement vector maps were generated for
		  the systolic action in canines with 0.94 x 1.9 mm nominal
		  in-plane resolution and 2.3 mm/pi displacement encoding. A
		  radial strain of 0.208 was measured across the free left
		  ventricular wall over 105 ms during systole. DENSE
		  displacement maps require small first-order gradient
		  moments for encoding. DENSE magnitude images exhibit
		  black-blood contrast which allows for better myocardial
		  definition and reduced motion-related artifacts.},
  DOI		= {10.1006/jmre.1998.1676},
  Institution	= {Laboratory of Cardiac Energetics, NHLBI, Bethesda,
		  Maryland, 20892-1061, USA.},
  Keywords	= {Animals; Artifacts; Computer Simulation; Dogs; Heart,
		  anatomy /&/ histology/physiology; Humans; Image Processing,
		  Computer-Assisted; Magnetic Resonance Imaging, methods;
		  Myocardial Contraction; Sensitivity and Specificity},
  Language	= {eng},
  medline-pst	= {ppublish},
  owner		= {stoeckc},
  pii		= {S1090-7807(98)91676-7},
  pmid		= {10053155},
  timestamp	= {2015.07.24},
  URL		= {http://dx.doi.org/10.1006/jmre.1998.1676}
}

@Article{	  alexander2001,
  Title		= {Spatial transformations of diffusion tensor magnetic
		  resonance images},
  Author	= {Alexander, Daniel C and Pierpaoli, Carlo and Basser, Peter
		  J and Gee, James C},
  Journal	= {IEEE Transactions on Medical Imaging},
  Volume	= {20},
  Number	= {11},
  Pages		= {1131--1139},
  Year		= {2001},
  Publisher	= {IEEE}
}

@InCollection{	  allain-85,
  Author	= {Allain, G.},
  BookTitle	= {Res. notes in Math.},
  Journal	= {Appl. Math. Optim.},
  Pages		= {355-364},
  Publisher	= {Pitman},
  Title		= {Small-time existence for the {Navier-Stokes} equations
		  with a free surface and surface tension},
  Volume	= {121},
  Year		= {1985}
}

###InCollection{  allain-85,
  Author	= {Allain, G.},
  BookTitle	= {Res. notes in Math.},
  Journal	= {Appl. Math. Optim.},
  Pages		= {355-364},
  Publisher	= {Pitman},
  Title		= {Small-time existence for the {Navier-Stokes} equations
		  with a free surface and surface tension},
  Volume	= {121},
  Year		= {1985}
}

@Article{	  allain-87,
  Author	= {Allain, G.},
  Journal	= {Appl. Math. Optim.},
  Pages		= {37-50},
  Title		= {Small-time existence for the {Navier-Stokes} equations
		  with a free surface},
  Volume	= {16},
  Year		= {1987}
}

###Article{	  allain-87,
  Author	= {Allain, G.},
  Journal	= {Appl. Math. Optim.},
  Pages		= {37-50},
  Title		= {Small-time existence for the {Navier-Stokes} equations
		  with a free surface},
  Volume	= {16},
  Year		= {1987}
}

@Article{	  allaire-89,
  Author	= {Allaire, Gr{\'e}goire},
  fjournal	= {Asymptotic Analysis},
  Journal	= {Asymptotic Anal.},
  Number	= {3},
  Pages		= {203--222},
  Title		= {Homogenization of the {S}tokes flow in a connected porous
		  medium},
  Volume	= {2},
  Year		= {1989}
}

###Article{	  allaire-89,
  Author	= {Allaire, Gr{\'e}goire},
  fjournal	= {Asymptotic Analysis},
  Journal	= {Asymptotic Anal.},
  Number	= {3},
  Pages		= {203--222},
  Title		= {Homogenization of the {S}tokes flow in a connected porous
		  medium},
  Volume	= {2},
  Year		= {1989}
}

@Article{	  allaire-90,
  Author	= {Allaire, G.},
  fjournal	= {Archive for Rational Mechanics and Analysis},
  Journal	= {Arch. Rational Mech. Anal.},
  Number	= {3},
  Pages		= {209--259},
  Title		= {Homogenization of the {N}avier-{S}tokes equations in open
		  sets perforated with tiny holes. {I}. {A}bstract framework,
		  a volume distribution of holes},
  Volume	= {113},
  Year		= {1990}
}

###Article{	  allaire-90,
  Author	= {Allaire, G.},
  fjournal	= {Archive for Rational Mechanics and Analysis},
  Journal	= {Arch. Rational Mech. Anal.},
  Number	= {3},
  Pages		= {209--259},
  Title		= {Homogenization of the {N}avier-{S}tokes equations in open
		  sets perforated with tiny holes. {I}. {A}bstract framework,
		  a volume distribution of holes},
  Volume	= {113},
  Year		= {1990}
}

@Article{	  allaire-90b,
  Author	= {Allaire, G.},
  fjournal	= {Archive for Rational Mechanics and Analysis},
  Journal	= {Arch. Rational Mech. Anal.},
  Number	= {3},
  Pages		= {261--298},
  Title		= {Homogenization of the {N}avier-{S}tokes equations in open
		  sets perforated with tiny holes. {II}. {N}oncritical sizes
		  of the holes for a volume distribution and a surface
		  distribution of holes},
  Volume	= {113},
  Year		= {1990}
}

###Article{	  allaire-90b,
  Author	= {Allaire, G.},
  fjournal	= {Archive for Rational Mechanics and Analysis},
  Journal	= {Arch. Rational Mech. Anal.},
  Number	= {3},
  Pages		= {261--298},
  Title		= {Homogenization of the {N}avier-{S}tokes equations in open
		  sets perforated with tiny holes. {II}. {N}oncritical sizes
		  of the holes for a volume distribution and a surface
		  distribution of holes},
  Volume	= {113},
  Year		= {1990}
}

@Article{	  allaire-91,
  Author	= {Allaire, G.},
  fjournal	= {Annali della Scuola Normale Superiore di Pisa. Classe di
		  Scienze. Serie IV},
  Journal	= {Ann. Scuola Norm. Sup. Pisa Cl. Sci. (4)},
  Number	= {4},
  Pages		= {475--499},
  Title		= {Continuity of the {D}arcy's law in the low-volume fraction
		  limit},
  Volume	= {18},
  Year		= {1991}
}

###Article{	  allaire-91,
  Author	= {Allaire, G.},
  fjournal	= {Annali della Scuola Normale Superiore di Pisa. Classe di
		  Scienze. Serie IV},
  Journal	= {Ann. Scuola Norm. Sup. Pisa Cl. Sci. (4)},
  Number	= {4},
  Pages		= {475--499},
  Title		= {Continuity of the {D}arcy's law in the low-volume fraction
		  limit},
  Volume	= {18},
  Year		= {1991}
}

@Article{	  allaire-91a,
  Author	= {Allaire, G.},
  fjournal	= {Communications on Pure and Applied Mathematics},
  Journal	= {Comm. Pure Appl. Math.},
  Number	= {6},
  Pages		= {605--641},
  Title		= {Homogenization of the {N}avier-{S}tokes equations with a
		  slip boundary condition},
  Volume	= {44},
  Year		= {1991}
}

###Article{	  allaire-91a,
  Author	= {Allaire, G.},
  fjournal	= {Communications on Pure and Applied Mathematics},
  Journal	= {Comm. Pure Appl. Math.},
  Number	= {6},
  Pages		= {605--641},
  Title		= {Homogenization of the {N}avier-{S}tokes equations with a
		  slip boundary condition},
  Volume	= {44},
  Year		= {1991}
}

@InCollection{	  alle1,
  Address	= {New York},
  Author	= {Allaire, G. and Mikeli{\'c}, A.},
  BookTitle	= {Homogenization and porous media},
  Pages		= {45--76, 259--275},
  Publisher	= {Springer},
  Series	= {Interdiscip. Appl. Math.},
  Title		= {One-phase {N}ewtonian flow},
  Volume	= {6},
  Year		= {1997}
}

###InCollection{  alle1,
  Address	= {New York},
  Author	= {Allaire, G. and Mikeli{\'c}, A.},
  BookTitle	= {Homogenization and porous media},
  Pages		= {45--76, 259--275},
  Publisher	= {Springer},
  Series	= {Interdiscip. Appl. Math.},
  Title		= {One-phase {N}ewtonian flow},
  Volume	= {6},
  Year		= {1997}
}

@Book{		  allen2013moss,
  Title		= {Moss \& Adams' Heart Disease in Infants, Children, and
		  Adolescents: Including the Fetus and Young Adult},
  Author	= {Allen, Hugh D and Driscoll, David J and Shaddy, Robert E
		  and Feltes, Timothy F},
  Year		= {2013},
  Publisher	= {Lippincott Williams \& Wilkins}
}

@Article{	  alnaes_fenics_2015,
  Title		= {The {{FEniCS Project Version}} 1.5},
  Author	= {Aln{\ae}s, Martin and Blechta, Jan and Hake, Johan and
		  Johansson, August and Kehlet, Benjamin and Logg, Anders and
		  Richardson, Chris and Ring, Johannes and Rognes, Marie E.
		  and Wells, Garth N.},
  Year		= {2015},
  Volume	= {3},
  ISSN		= {2197-8263},
  DOI		= {10.11588/ans.2015.100.20553},
  Abstract	= {The FEniCS Project is a collaborative project for the
		  development of innovative concepts and tools for automated
		  scientific computing, with a particular focus on the
		  solution of differential equations by finite element
		  methods. The FEniCS Projects software consists of a
		  collection of interoperable software components, including
		  DOLFIN, FFC, FIAT, Instant, UFC, UFL, and mshr. This note
		  describes the new features and changes introduced in the
		  release of FEniCS version 1.5.},
  copyright	= {Copyright (c) 2015 Archive of Numerical Software},
  Journal	= {Archive of Numerical Software},
  Language	= {en},
  Number	= {100}
}

###Article{	  alnaes_fenics_2015,
  langid	= {english},
  Title		= {The {{FEniCS Project Version}} 1.5},
  Volume	= {3},
  ISSN		= {2197-8263},
  URL		= {http://journals.ub.uni-heidelberg.de/index.php/ans/article/view/20553},
  DOI		= {10.11588/ans.2015.100.20553},
  Abstract	= {The FEniCS Project is a collaborative project for the
		  development of innovative concepts and tools for automated
		  scientific computing, with a particular focus on the
		  solution of differential equations by finite element
		  methods. The FEniCS Projects software consists of a
		  collection of interoperable software components, including
		  DOLFIN, FFC, FIAT, Instant, UFC, UFL, and mshr. This note
		  describes the new features and changes introduced in the
		  release of FEniCS version 1.5.},
  Number	= {100},
  JournalTitle	= {Archive of Numerical Software},
  URLDate	= {2016-01-29},
  Date		= {2015},
  Author	= {AlnÃ¦s, Martin and Blechta, Jan and Hake, Johan and
		  Johansson, August and Kehlet, Benjamin and Logg, Anders and
		  Richardson, Chris and Ring, Johannes and Rognes, Marie E.
		  and Wells, Garth N.}
}

@Article{	  alnaesblechta2015a,
  Title		= {The FEniCS Project Version 1.5},
  Author	= {Martin S. Aln{\ae}s and Jan Blechta and Johan Hake and
		  August Johansson and Benjamin Kehlet and Anders Logg and
		  Chris Richardson and Johannes Ring and Marie E. Rognes and
		  Garth N. Wells},
  Year		= {2015},
  Journal	= {Archive of Numerical Software},
  Volume	= {3},
  Number	= {100},
  DOI		= {10.11588/ans.2015.100.20553},
  page		= {9-23}
}

@Article{	  ambrosi2011jmps,
  Title		= {Perspectives on biological growth and remodeling},
  Author	= {Ambrosi, D and Ateshian, GA and Arruda, EM and Cowin, SC
		  and Dumais, J and Goriely, A and Holzapfel, Gerhard A and
		  Humphrey, JD and Kemkemer, R and Kuhl, E and others},
  Journal	= {Journal of the Mechanics and Physics of Solids},
  Year		= {2011},
  Number	= {4},
  Pages		= {863--883},
  Volume	= {59},
  File		= {:ambrosi11.pdf:PDF},
  Keywords	= {growth, remodeling},
  Publisher	= {Elsevier},
  timestamp	= {2015/01/12}
}

@Article{	  amestoy_fully_2001,
  Title		= {A Fully Asynchronous Multifrontal Solver Using Distributed
		  Dynamic Scheduling},
  Author	= {Amestoy, Patrick R. and Duff, Iain S. and L'Excellent,
		  Jean-Yves and Koster, Jacko},
  Year		= {2001},
  Volume	= {23},
  Pages		= {15--41},
  Journal	= {SIAM Journal on Matrix Analysis and Applications},
  Number	= {1}
}

@Book{		  amher-meddict-07,
  Title		= {{The American Heritage Medical Dictionary}},
  Author	= {},
  Year		= {2007},
  Publisher	= {Houghton Mifflin Company},
  Edition	= {}
}

###Book{	  amher-meddict-07,
  Title		= {{The American Heritage Medical Dictionary}},
  Author	= {},
  Year		= {2007},
  Publisher	= {Houghton Mifflin Company},
  Edition	= {}
}

@Book{		  anderson-tannehill-pletcher-84,
  Author	= {Anderson, D.A. and Tannehill, J.C. and Pletcher, R.H.},
  Publisher	= {Hemisphere, Mc Graw Hill},
  Title		= {Computational fluid mechanics and heat transfer},
  Year		= {1984}
}

###Book{	  anderson-tannehill-pletcher-84,
  Author	= {Anderson, D.A. and Tannehill, J.C. and Pletcher, R.H.},
  Publisher	= {Hemisphere, Mc Graw Hill},
  Title		= {Computational fluid mechanics and heat transfer},
  Year		= {1984}
}

@Article{	  andersson-halden-glomsaker-00,
  Author	= {Andersson, H.I. and Halden, R. and Glomsaker, T.},
  Journal	= {J. Biomechanics},
  Pages		= {1257-1262},
  Title		= {Effects of surface irregularities on flow resistance in
		  differently shaped arterial stenoses},
  Volume	= {33},
  Year		= {2000}
}

###Article{	  andersson-halden-glomsaker-00,
  Author	= {Andersson, H.I. and Halden, R. and Glomsaker, T.},
  Journal	= {J. Biomechanics},
  Pages		= {1257-1262},
  Title		= {Effects of surface irregularities on flow resistance in
		  differently shaped arterial stenoses},
  Volume	= {33},
  Year		= {2000}
}

@InProceedings{	  angelini-gerard-06,
  Author	= {Angelini, E. and G\'erard, O.},
  BookTitle	= {Proc. of the 28th IEEE EMBS Annual International
		  Conference},
  date-added	= {2009-03-10 12:17:56 -0700},
  date-modified	= {2009-03-10 12:18:08 -0700},
  Title		= {Review of Myocardial Motion Estimation Methods from
		  Optical Flow Tracking on Ultrasound Data},
  Year		= {2006}
}

###InProceedings{ angelini-gerard-06,
  Author	= {Angelini, E. and G\'erard, O.},
  BookTitle	= {Proc. of the 28th IEEE EMBS Annual International
		  Conference},
  date-added	= {2009-03-10 12:17:56 -0700},
  date-modified	= {2009-03-10 12:18:08 -0700},
  Title		= {Review of Myocardial Motion Estimation Methods from
		  Optical Flow Tracking on Ultrasound Data},
  Year		= {2006}
}

@Article{	  angot-99,
  Author	= {Angot, Ph.},
  code		= {por10},
  Journal	= {Math. Meth. Appl. Sci.},
  Pages		= {1395-1412},
  Title		= {Analysis of singular perturbations on the Brinkman problem
		  for fictitious domain models of viscous flows},
  Volume	= {22},
  Year		= {1999}
}

###Article{	  angot-99,
  Author	= {Angot, Ph.},
  code		= {por10},
  Journal	= {Math. Meth. Appl. Sci.},
  Pages		= {1395-1412},
  Title		= {Analysis of singular perturbations on the Brinkman problem
		  for fictitious domain models of viscous flows},
  Volume	= {22},
  Year		= {1999}
}

@Article{	  angot-bruneau-fabrie-99,
  Author	= {Angot, Ph. and Bruneau, C.H and Fabrie, P.},
  code		= {por11},
  Journal	= {Numer. Math.},
  Pages		= {497--520},
  Title		= {A penalization method to take into account obstales in
		  incompressible viscous flows},
  Volume	= {81},
  Year		= {1999}
}

###Article{	  angot-bruneau-fabrie-99,
  Author	= {Angot, Ph. and Bruneau, C.H and Fabrie, P.},
  code		= {por11},
  Journal	= {Numer. Math.},
  Pages		= {497--520},
  Title		= {A penalization method to take into account obstales in
		  incompressible viscous flows},
  Volume	= {81},
  Year		= {1999}
}

@Article{	  ansalone2003ajc,
  Title		= {Biventricular pacing in heart failure: back to basics in
		  the pathophysiology of left bundle branch block to reduce
		  the number of nonresponders},
  Author	= {Ansalone, G. and Giannantoni, P. and Ricci, R. and
		  Trambaiolo, P. and Fedele, F. and Santini, M.},
  Journal	= {The American Journal of Cardiology},
  Year		= {2003},
  Month		= may,
  Number	= {9},
  Pages		= {55--61},
  Volume	= {91},
  DOI		= {10.1016/S0002-9149(02)03339-8},
  File		= {Ansalone_2003.pdf:/home/hoermann/.zotero/zotero/krpbc0h6.default/zotero/storage/JI8G97E8/Ansalone_2003.pdf:application/pdf},
  ISSN		= {00029149},
  Keywords	= {CRT},
  Language	= {en},
  ShortTitle	= {Biventricular pacing in heart failure},
  URL		= {http://linkinghub.elsevier.com/retrieve/pii/S0002914902033398},
  URLDate	= {2014-11-27}
}

@Article{	  antiga2004robust,
  Title		= {Robust and objective decomposition and mapping of
		  bifurcating vessels},
  Author	= {Antiga, Luca and Steinman, David A},
  Journal	= {IEEE transactions on medical imaging},
  Volume	= {23},
  Number	= {6},
  Pages		= {704--713},
  Year		= {2004},
  Publisher	= {IEEE}
}

@Article{	  antiga_image-based_2008,
  Title		= {An Image-Based Modeling Framework for Patient-Specific
		  Computational Hemodynamics},
  Volume	= {46},
  Number	= {11},
  JournalTitle	= {Medical \& biological engineering \& computing},
  Year		= {2008},
  Pages		= {1097},
  Author	= {Antiga, Luca and Piccinelli, Marina and Botti, Lorenzo and
		  Ene-Iordache, Bogdan and Remuzzi, Andrea and Steinman,
		  David A.}
}

@Article{	  antille-descloux-flueck-romerio-99,
  Annote	= {mhd, aluminium, stability},
  Author	= {Antille, J.P. and Descloux, J. and Flueck, M. and Romerio,
		  M. V.},
  code		= {mhd24},
  Journal	= {Light Metal},
  Pages		= {333-338},
  Title		= {Eigenmodes and interface description in a {Hall-Heroult}
		  cell},
  Year		= {1999}
}

###Article{	  antille-descloux-flueck-romerio-99,
  Annote	= {mhd, aluminium, stability},
  Author	= {Antille, J.P. and Descloux, J. and Flueck, M. and Romerio,
		  M. V.},
  code		= {mhd24},
  Journal	= {Light Metal},
  Pages		= {333-338},
  Title		= {Eigenmodes and interface description in a {Hall-Heroult}
		  cell},
  Year		= {1999}
}

@Book{		  antontsev-kazhikov-monakhov-93,
  Author	= {Antontsev, S.N. and Kazhikov, A.V. and Monakhov, V.N.},
  Publisher	= {North-Holland},
  Title		= {Boundary values problems in mechanics of nonhomogeneous
		  fluids},
  Year		= {1993}
}

###Book{	  antontsev-kazhikov-monakhov-93,
  Author	= {Antontsev, S.N. and Kazhikov, A.V. and Monakhov, V.N.},
  Publisher	= {North-Holland},
  Title		= {Boundary values problems in mechanics of nonhomogeneous
		  fluids},
  Year		= {1993}
}

@Article{	  arai2011jcpt,
  Title		= {Magnetic resonance imaging for area at risk, myocardial
		  infarction, and myocardial salvage.},
  Author	= {Arai, Andrew E.},
  Journal	= {J Cardiovasc Pharmacol Ther},
  Year		= {2011},
  Number	= {3-4},
  Pages		= {313--320},
  Volume	= {16},
  Abstract	= {Almost all published preclinical studies of
		  cardioprotective agents include a measurement of area at
		  risk, infarct size, and thus allow determination of
		  myocardial salvage as an indicator of therapeutic benefit.
		  Until recently, single-photon emission tomography (SPECT)
		  imaging with injection of sestamibi prior to intervention
		  was the only clinical method suitable for making similar
		  assessments in patients. Over the past 5 years, a large
		  number of articles have documented that magnetic resonance
		  imaging (MRI) can noninvasively determine area at risk,
		  infarct size, and myocardial salvage. While T2-weighted
		  imaging has been the method used most commonly, precontrast
		  T1-weighted images and early gadolinium enhancement (EGE)
		  images can also determine the size of the area at risk. All
		  3 of these MRI methods detect the area at risk based on
		  myocardial edema resulting from ischemia. Late gadolinium
		  enhancement (LGE) images provide a well-accepted reference
		  standard for infarct size in all of those methods. Finally,
		  LGE images can also provide a single modality measure of
		  myocardial salvage based on the "wave front" of myocardial
		  injury associated with the progressively more severe damage
		  associated with acute myocardial infarction (MI).
		  Essentially, the LGE images can provide an
		  endocardial-based snap shot of infarct size and salvaged
		  myocardium is estimated as the viable myocardium within the
		  circumferential extent of the infarct. Thus, the purpose of
		  this review is to provide an overview of how MRI can
		  determine the area at risk, infarct size, and thus measure
		  myocardial salvage.},
  DOI		= {10.1177/1074248411412378},
  Institution	= {Department of Health and Human Services, Cardiovascular
		  and Pulmonary Branch, National Heart, Lung and Blood
		  Institute, National Institutes of Health, Bethesda, MD
		  20892, USA. araia@nih.gov},
  Keywords	= {Contrast Media, diagnostic use; Gadolinium, diagnostic
		  use; Humans; Magnetic Resonance Imaging, methods;
		  Myocardial Infarction,
		  diagnosis/physiopathology/radionuclide imaging;
		  Organotechnetium Compounds, diagnostic use},
  Language	= {eng},
  medline-pst	= {ppublish},
  owner		= {stoeckc},
  pii		= {16/3-4/313},
  pmid		= {21821534},
  timestamp	= {2015.07.24},
  URL		= {http://dx.doi.org/10.1177/1074248411412378}
}

@Article{	  armero-simo-96,
  Annote	= {mhd, numerical scheme},
  Author	= {Armero, F. and Simo, J.C.},
  code		= {mhd16},
  Journal	= {Comp. Methods Appl. Mech. Engrg.},
  Pages		= {41-90},
  Title		= {Long-time dissipativity of time-stepping algorithms for an
		  abstract evolution equation with applications to the
		  incompressible {MHD} and {Navier-Stokes} equations},
  Volume	= {131},
  Year		= {1996}
}

###Article{	  armero-simo-96,
  Annote	= {mhd, numerical scheme},
  Author	= {Armero, F. and Simo, J.C.},
  code		= {mhd16},
  Journal	= {Comp. Methods Appl. Mech. Engrg.},
  Pages		= {41-90},
  Title		= {Long-time dissipativity of time-stepping algorithms for an
		  abstract evolution equation with applications to the
		  incompressible {MHD} and {Navier-Stokes} equations},
  Volume	= {131},
  Year		= {1996}
}

@Article{	  armour1970,
  Author	= {Armour, J.A. and Randall, W.C.},
  Title		= {Structural basis for cardiac function},
  Volume	= {218},
  Number	= {6},
  Pages		= {1517-1523},
  Year		= {1970},
  Journal	= {American Journal of Physiology -- Legacy Content}
}

@Article{	  arzani_vivo_2012,
  langid	= {english},
  Title		= {In {{Vivo Validation}} of {{Numerical Prediction}} for
		  {{Turbulence Intensity}} in an {{Aortic Coarctation}}},
  Volume	= {40},
  ISSN		= {0090-6964, 1573-9686},
  URL		= {http://link.springer.com/10.1007/s10439-011-0447-6},
  DOI		= {10.1007/s10439-011-0447-6},
  Number	= {4},
  JournalTitle	= {Annals of Biomedical Engineering},
  URLDate	= {2019-02-06},
  Year		= {2012-04},
  Pages		= {860-870},
  Author	= {Arzani, Amirhossein and Dyverfeldt, Petter and Ebbers,
		  Tino and Shadden, Shawn C.}
}

@Article{	  ashikaga2013hrythm,
  Title		= {Feasibility of image-based simulation to estimate ablation
		  target in human ventricular arrhythmia},
  Author	= {Ashikaga, Hiroshi and Arevalo, Hermenegild and
		  Vadakkumpadan, Fijoy and Blake, Robert C and Bayer, Jason D
		  and Nazarian, Saman and Zviman, M Muz and Tandri,
		  Harikrishna and Berger, Ronald D and Calkins, Hugh and
		  others},
  Journal	= {Heart Rhythm},
  Volume	= {10},
  Number	= {8},
  Pages		= {1109--1116},
  Year		= {2013},
  Publisher	= {Elsevier}
}

@Article{	  assous-degond-heintze-raviart-segre-93,
  Author	= {Assous, F. and Degond, P. and Heintze, E. and Raviart,
		  P.A. and Segre J.},
  Journal	= {Jour. Comp. Phys.},
  Pages		= {222-237},
  Title		= {On a finite-element method for solving the three
		  dimensional {Maxwell} equations},
  Volume	= {109},
  Year		= {1993}
}

###Article{	  assous-degond-heintze-raviart-segre-93,
  Author	= {Assous, F. and Degond, P. and Heintze, E. and Raviart,
		  P.A. and Segre J.},
  Journal	= {Jour. Comp. Phys.},
  Pages		= {222-237},
  Title		= {On a finite-element method for solving the three
		  dimensional {Maxwell} equations},
  Volume	= {109},
  Year		= {1993}
}

@PhdThesis{	  astorino-10,
  Author	= {Astorino, M.},
  Title		= {Fluid-Structure Interaction in the Cardiovascular System.
		  Numerical Analysis and Simulation},
  School	= {Universit\'e Pierre et Marie Curie, Paris 6},
  Year		= 2010
}

###PhdThesis{	  astorino-10,
  Author	= {Astorino, M.},
  Title		= {Fluid-Structure Interaction in the Cardiovascular System.
		  Numerical Analysis and Simulation},
  School	= {Universit\'e Pierre et Marie Curie, Paris 6},
  Year		= 2010
}

@Article{	  astorino-chouly-fernandez-09,
  Author	= {Astorino, M. and Chouly, F. and Fern\'andez, M.A.},
  DOI		= {10.1016/j.crma.2008.11.003},
  Journal	= { C. R. Acad. Sci. Paris S\'er. I Math.},
  Number	= {1--2},
  Pages		= {99--104},
  Title		= {An added-mass free semi-implicit coupling scheme for
		  fluid-structure interaction},
  Volume	= {347},
  Year		= {2009}
}

###Article{	  astorino-chouly-fernandez-09,
  Author	= {Astorino, M. and Chouly, F. and Fern\'andez, M.A.},
  DOI		= {10.1016/j.crma.2008.11.003},
  Journal	= { C. R. Acad. Sci. Paris S\'er. I Math.},
  Number	= {1--2},
  Pages		= {99--104},
  Title		= {An added-mass free semi-implicit coupling scheme for
		  fluid-structure interaction},
  Volume	= {347},
  Year		= {2009},
  bdsk-url-1	= {http://dx.doi.org/10.1016/j.crma.2008.11.003}
}

@Unpublished{	  astorino-grandmont-xx,
  Author	= {Astorino, M. and Grandmont, C.},
  Note		= {Submitted},
  Title		= {Convergence analysis of a projection semi-implicit
		  coupling scheme for fluid-structure interaction problems}
}

###Unpublished{	  astorino-grandmont-xx,
  Author	= {Astorino, M. and Grandmont, C.},
  Note		= {Submitted},
  Title		= {Convergence analysis of a projection semi-implicit
		  coupling scheme for fluid-structure interaction problems}
}

@Article{	  astorino09_robinsemiimpl,
  Author	= "Astorino, M. and Chouly, F. and Fern\'{a}ndez, M.~A.",
  collaboration	= {},
  Title		= {Robin Based Semi-Implicit Coupling in Fluid-Structure
		  Interaction: Stability Analysis and Numerics},
  Publisher	= {SIAM},
  Year		= {2009},
  Journal	= sisc,
  Volume	= {31},
  Number	= {6},
  Pages		= {4041-4065},
  DOI		= {10.1137/090749694}
}

###Article{	  astorino09_robinsemiimpl,
  Author	= "Astorino, M. and Chouly, F. and Fern\'{a}ndez, M.~A.",
  collaboration	= {},
  Title		= {Robin Based Semi-Implicit Coupling in Fluid-Structure
		  Interaction: Stability Analysis and Numerics},
  Publisher	= {SIAM},
  Year		= {2009},
  Journal	= sisc,
  Volume	= {31},
  Number	= {6},
  Pages		= {4041-4065},
  DOI		= {10.1137/090749694}
}

@Article{	  astorino2009fsivalves,
  Title		= {Fluid--structure interaction and multi-body contact:
		  application to aortic valves},
  Author	= {Astorino, Matteo and Gerbeau, Jean-Fr{\'e}d{\'e}ric and
		  Pantz, Olivier and Traore, Karim-Fr{\'e}d{\'e}ric},
  Journal	= {Computer Methods in Applied Mechanics and Engineering},
  Volume	= {198},
  Number	= {45-46},
  Pages		= {3603--3612},
  Year		= {2009},
  Publisher	= {Elsevier}
}

@Article{	  astorino2012ris,
  Title		= {A robust and efficient valve model based on resistive
		  immersed surfaces},
  Author	= {Astorino, M. and Hamers, J. and Shadden, S. and Gerbeau,
		  J.},
  Journal	= {International Journal for Numerical Methods in Biomedical
		  Engineering},
  Volume	= {28},
  Number	= {9},
  Pages		= {937--959},
  Year		= {2012},
  Publisher	= {Wiley Online Library}
}

@Article{	  astorino_robin_2010,
  langid	= {english},
  Title		= {Robin {{Based Semi}}-{{Implicit Coupling}} in
		  {{Fluid}}-{{Structure Interaction}}: {{Stability Analysis}}
		  and {{Numerics}}},
  Volume	= {31},
  ISSN		= {1064-8275, 1095-7197},
  URL		= {http://epubs.siam.org/doi/10.1137/090749694},
  DOI		= {10.1137/090749694},
  ShortTitle	= {Robin {{Based Semi}}-{{Implicit Coupling}} in
		  {{Fluid}}-{{Structure Interaction}}},
  Abstract	= {In this paper, we propose a semi-implicit coupling scheme
		  for the numerical simulation of ï¬uid-structure
		  interaction systems involving a viscous incompressible
		  ï¬uid. The scheme is stable irrespective of the so-called
		  added-mass eï¬ect and allows for conservative
		  time-stepping within the structure. The eï¬ciency of the
		  scheme is based on the explicit splitting of the viscous
		  eï¬ects and geometrical/convective nonlinearities through
		  the use of the ChorinâTemam projection scheme within the
		  ï¬uid. Stability comes from the implicit pressure-solid
		  coupling and a speciï¬c Robin treatment of the explicit
		  viscous-solid coupling, derived from Nitscheâs method.},
  Number	= {6},
  JournalTitle	= {SIAM Journal on Scientific Computing},
  URLDate	= {2018-09-19},
  Date		= {2010-01},
  Pages		= {4041-4065},
  Author	= {Astorino, Matteo and Chouly, Franz and FernÃ¡ndez, Miguel
		  A.}
}

@Article{	  astrand-etal-11,
  Author	= {Astrand, H. and Stalhand, J. and Karlsson, J. and
		  Karlsson, M. and Sonesson, B. and L\"anne, T.},
  Title		= {In vivo estimation of the contribution of elastin and
		  collagen to the mechanical properties in the human
		  abdominal aorta: effect of age and sex},
  Volume	= {110},
  Number	= {1},
  Pages		= {176-187},
  Year		= {2011},
  DOI		= {10.1152/japplphysiol.00579.2010},
  Abstract	= {The mechanical properties of the aorta affect cardiac
		  function and are related to cardiovascular
		  morbidity/mortality. This study was designed to evaluate
		  the isotropic (mainly elastin, elastiniso) and anisotropic
		  (mainly collagen, collagenani) material parameters within
		  the human aorta in vivo. Thirty healthy men and women in
		  three different age categories (23â30, 41â54, and
		  67â72 yr) were included. A novel mechanical model was
		  used to identify the mechanical properties and the strain
		  field with aid of simultaneously recorded pressure and
		  radius in the abdominal aorta. The magnitudes of the
		  material parameters relating to both the stiffness of
		  elastiniso and collagenani were in agreement with earlier
		  in vitro studies. The load-bearing fraction attributed to
		  collagenani oscillated from 10 to 30\% between diastolic
		  and systolic pressures during the cardiac cycle. With age,
		  stiffness of elastiniso increased in men, despite the
		  decrease in elastin content that has been found due to
		  elastolysis. Furthermore, an increase in stiffness of
		  collagenani at high physiological pressure was found. This
		  might be due to increased glycation, as well as changed
		  isoforms of collagen in the aortic wall with age. A marked
		  sex difference was observed, with a much less age-related
		  effect, both on elastiniso and collagenani stiffness in
		  women. Possible factors of importance could be the effect
		  of sex hormones, as well as differing collagen isoforms,
		  between the sexes.},
  Journal	= {Journal of Applied Physiology}
}

###Article{	  astrand-etal-11,
  Author	= {Astrand, H. and Stalhand, J. and Karlsson, J. and
		  Karlsson, M. and Sonesson, B. and L\"anne, T.},
  Title		= {In vivo estimation of the contribution of elastin and
		  collagen to the mechanical properties in the human
		  abdominal aorta: effect of age and sex},
  Volume	= {110},
  Number	= {1},
  Pages		= {176-187},
  Year		= {2011},
  DOI		= {10.1152/japplphysiol.00579.2010},
  Abstract	= {The mechanical properties of the aorta affect cardiac
		  function and are related to cardiovascular
		  morbidity/mortality. This study was designed to evaluate
		  the isotropic (mainly elastin, elastiniso) and anisotropic
		  (mainly collagen, collagenani) material parameters within
		  the human aorta in vivo. Thirty healthy men and women in
		  three different age categories (23â30, 41â54, and
		  67â72 yr) were included. A novel mechanical model was
		  used to identify the mechanical properties and the strain
		  field with aid of simultaneously recorded pressure and
		  radius in the abdominal aorta. The magnitudes of the
		  material parameters relating to both the stiffness of
		  elastiniso and collagenani were in agreement with earlier
		  in vitro studies. The load-bearing fraction attributed to
		  collagenani oscillated from 10 to 30\% between diastolic
		  and systolic pressures during the cardiac cycle. With age,
		  stiffness of elastiniso increased in men, despite the
		  decrease in elastin content that has been found due to
		  elastolysis. Furthermore, an increase in stiffness of
		  collagenani at high physiological pressure was found. This
		  might be due to increased glycation, as well as changed
		  isoforms of collagen in the aortic wall with age. A marked
		  sex difference was observed, with a much less age-related
		  effect, both on elastiniso and collagenani stiffness in
		  women. Possible factors of importance could be the effect
		  of sex hormones, as well as differing collagen isoforms,
		  between the sexes.},
  URL		= {http://jap.physiology.org/content/110/1/176.abstract},
  EPrint	= {http://jap.physiology.org/content/110/1/176.full.pdf+html},
  Journal	= {Journal of Applied Physiology}
}

@TechReport{	  audusse-bristeau-perthame-00,
  Author	= {Audusse, E. and Bristeau, M. O. and Perthame, B.},
  Institution	= {INRIA},
  Note		= {http://www.inria.fr/RRRT/RR-3989.html},
  Number	= {3989},
  Title		= {Kinetic schemes for solving {S}aint-{V}enant equations
		  with source terms},
  Type		= {Rapport de Recherche},
  Year		= {2000}
}

###TechReport{	  audusse-bristeau-perthame-00,
  Author	= {Audusse, E. and Bristeau, M. O. and Perthame, B.},
  Institution	= {INRIA},
  Note		= {http://www.inria.fr/RRRT/RR-3989.html},
  Number	= {3989},
  Title		= {Kinetic schemes for solving {S}aint-{V}enant equations
		  with source terms},
  Type		= {Rapport de Recherche},
  Year		= {2000}
}

@Article{	  augustin2011assessment,
  Title		= {An assessment of discretizations for convection-dominated
		  convection--diffusion equations},
  Author	= {Augustin, Matthias and Caiazzo, Alfonso and Fiebach,
		  Andr{\'e} and Fuhrmann, J{\"u}rgen and John, Volker and
		  Linke, Alexander and Umla, Rudolf},
  Journal	= {Computer Methods in Applied Mechanics and Engineering},
  Volume	= {200},
  Number	= {47},
  Pages		= {3395--3409},
  Year		= {2011},
  Publisher	= {Elsevier}
}

@Article{	  auroux-blum-08,
  Author	= {Auroux, D. and Blum, J.},
  date-added	= {2009-03-10 12:06:21 -0700},
  date-modified	= {2009-03-10 12:07:39 -0700},
  Journal	= {Nonlinear Processes Geophysics},
  Pages		= {305-319},
  Title		= {A nudging-based data assimilation method: the Back and
		  Forth Nudging (BFN) algorithm},
  Volume	= {15},
  Year		= {2008}
}

###Article{	  auroux-blum-08,
  Author	= {Auroux, D. and Blum, J.},
  date-added	= {2009-03-10 12:06:21 -0700},
  date-modified	= {2009-03-10 12:07:39 -0700},
  Journal	= {Nonlinear Processes Geophysics},
  Pages		= {305-319},
  Title		= {A nudging-based data assimilation method: the Back and
		  Forth Nudging (BFN) algorithm},
  Volume	= {15},
  Year		= {2008}
}

@Article{	  auroux-blum-08-npg,
  Author	= {Auroux, D. and Blum, J.},
  Title		= {A nudging-based data assimilation method for oceanographic
		  problems: the Back and Forth Nudging (BFN) algorithm},
  Journal	= {Nonlin. Proc. Geophys.},
  Volume	= {15},
  Year		= {2008},
  Pages		= {305--319}
}

###Article{	  auroux-blum-08-npg,
  Author	= {Auroux, D. and Blum, J.},
  Title		= {A nudging-based data assimilation method for oceanographic
		  problems: the Back and Forth Nudging (BFN) algorithm},
  Journal	= {Nonlin. Proc. Geophys.},
  Volume	= {15},
  Year		= {2008},
  Pages		= {305--319}
}

@Article{	  avril2010ani,
  Title		= {Anisotropic and hyperelastic identification of in vitro
		  human arteries from full-field optical measurements.},
  Author	= {Avril, S. and Badel, P. and Duprey, A.},
  Journal	= {J Biomech},
  Volume	= {43},
  Number	= {15},
  Pages		= {2978-85},
  Year		= {2010},
  Abstract	= {In this paper, we present a new approach for the bi-axial
		  characterization of in vitro human arteries and we prove
		  its feasibility on an example. The specificity of the
		  approach is that it can handle heterogeneous strain and
		  stress distributions in arterial segments. From the
		  full-field experimental data obtained in
		  inflation/extension tests, an inverse approach, called the
		  virtual fields method (VFM), is used for deriving the
		  material parameters of the tested arterial segment. The
		  obtained results are promising and the approach can
		  effectively provide relevant values for the anisotropic
		  hyperelastic properties of the tested sample. }
}

###Article{	  avril2010ani,
  Title		= {Anisotropic and hyperelastic identification of in vitro
		  human arteries from full-field optical measurements.},
  Author	= {Avril, S. and Badel, P. and Duprey, A.},
  Journal	= {J Biomech},
  Volume	= {43},
  Number	= {15},
  Pages		= {2978-85},
  Year		= {2010},
  Abstract	= {In this paper, we present a new approach for the bi-axial
		  characterization of in vitro human arteries and we prove
		  its feasibility on an example. The specificity of the
		  approach is that it can handle heterogeneous strain and
		  stress distributions in arterial segments. From the
		  full-field experimental data obtained in
		  inflation/extension tests, an inverse approach, called the
		  virtual fields method (VFM), is used for deriving the
		  material parameters of the tested arterial segment. The
		  obtained results are promising and the approach can
		  effectively provide relevant values for the anisotropic
		  hyperelastic properties of the tested sample. }
}

@Article{	  avril2015regional,
  Title		= {Regional identification of mechanical properties in
		  arteries},
  Author	= {Avril, St{\'e}phane and Bersi, Matthew R and Bellini,
		  Chiara and Genovese, Katia and Humphrey, Jay D},
  Journal	= {Computer methods in biomechanics and biomedical
		  engineering},
  Volume	= {18},
  Number	= {sup1},
  Pages		= {1874--1875},
  Year		= {2015},
  Publisher	= {Taylor \& Francis}
}

@Article{	  axel1989r,
  Title		= {MR imaging of motion with spatial modulation of
		  magnetization.},
  Author	= {Axel, L. and Dougherty, L.},
  Journal	= {Radiology},
  Year		= {1989},
  Month		= {Jun},
  Number	= {3},
  Pages		= {841--845},
  Volume	= {171},
  Abstract	= {A novel magnetic resonance imaging technique provides
		  direct imaging of motion by spatially modulating the degree
		  of magnetization prior to imaging. The preimaging pulse
		  sequence consists of a radio-frequency (RF) pulse to
		  produce transverse magnetization, a magnetic field gradient
		  to "wrap" the phase along the direction of the gradient,
		  and a second RF pulse to mix the modulated transverse
		  magnetization with the longitudinal magnetization. The
		  resulting images show periodic stripes due to the
		  modulation. Motion between the time of striping and image
		  formation is directly demonstrated as a corresponding
		  displacement of the stripes. This technique can be used to
		  study heart wall motion, to distinguish slowly moving blood
		  from thrombus, and to study the flow of blood and
		  cerebrospinal fluid.},
  DOI		= {10.1148/radiology.171.3.2717762},
  Institution	= {Department of Radiology, Hospital of the University of
		  Pennsylvania, Philadelphia 19104.},
  Keywords	= {Adult; Blood Flow Velocity; Female; Heart Diseases,
		  diagnosis/etiology; Humans; Magnetic Resonance Imaging,
		  methods; Magnetics; Middle Aged; Mitral Valve Stenosis,
		  complications/physiopathology; Models, Structural; Motion;
		  Myocardial Contraction; Spinal Cord Neoplasms,
		  cerebrospinal fluid; Thrombosis, diagnosis/etiology},
  Language	= {eng},
  medline-pst	= {ppublish},
  owner		= {stoeckc},
  pmid		= {2717762},
  timestamp	= {2015.07.24},
  URL		= {http://dx.doi.org/10.1148/radiology.171.3.2717762}
}

@Article{	  baaijens-01,
  Author	= {Baaijens, F.},
  Journal	= {Int. Jour. Num. Meth. Fluids},
  Pages		= {743-761},
  Title		= {A fictitious domain/mortar element method for
		  fluid-structure interaction},
  Volume	= {35},
  Year		= {2001}
}

###Article{	  baaijens-01,
  Author	= {Baaijens, F.},
  Journal	= {Int. Jour. Num. Meth. Fluids},
  Pages		= {743-761},
  Title		= {A fictitious domain/mortar element method for
		  fluid-structure interaction},
  Volume	= {35},
  Year		= {2001}
}

@Article{	  badel2011mec,
  Title		= {Mechanical identification of layer-specific properties of
		  mouse carotid arteries using 3D-DIC and a hyperelastic
		  anisotropic constitutive model.},
  Author	= {Badel, P. and Avril, S. and Lessner, S. and Sutton, M.},
  Journal	= {Computer Methods in Biomechanics and Biomedical
		  Engineering},
  Pages		= {37-48},
  Volume	= {15},
  Number	= {1},
  Year		= {2012},
  Abstract	= {The role of mechanics is known to be of primary order in
		  many arterial diseases; however, determining mechanical
		  properties of arteries remains a challenge. This paper
		  discusses the identifiability of the passive mechanical
		  properties of a mouse carotid artery, taking into account
		  the orientation of collagen fibres in the medial and
		  adventitial layers. On the basis of 3D digital image
		  correlation measurements of the surface strain during an
		  inflation/extension test, an inverse identification method
		  is set up. It involves a 3D finite element mechanical model
		  of the mechanical test and an optimisation algorithm. A
		  two-layer constitutive model derived from the Holzapfel
		  model is used, with five and then seven parameters. The
		  five-parameter model is successfully identified providing
		  layer-specific fibre angles. The seven-parameter model is
		  over parameterised, yet it is shown that additional data
		  from a simple tension test make the identification of
		  refined layer-specific data reliable. }
}

###Article{	  badel2011mec,
  Title		= {Mechanical identification of layer-specific properties of
		  mouse carotid arteries using 3D-DIC and a hyperelastic
		  anisotropic constitutive model.},
  Author	= {Badel, P. and Avril, S. and Lessner, S. and Sutton, M.},
  Journal	= {Computer Methods in Biomechanics and Biomedical
		  Engineering},
  Pages		= {37-48},
  Volume	= {15},
  Number	= {1},
  Year		= {2012},
  Abstract	= {The role of mechanics is known to be of primary order in
		  many arterial diseases; however, determining mechanical
		  properties of arteries remains a challenge. This paper
		  discusses the identifiability of the passive mechanical
		  properties of a mouse carotid artery, taking into account
		  the orientation of collagen fibres in the medial and
		  adventitial layers. On the basis of 3D digital image
		  correlation measurements of the surface strain during an
		  inflation/extension test, an inverse identification method
		  is set up. It involves a 3D finite element mechanical model
		  of the mechanical test and an optimisation algorithm. A
		  two-layer constitutive model derived from the Holzapfel
		  model is used, with five and then seven parameters. The
		  five-parameter model is successfully identified providing
		  layer-specific fibre angles. The seven-parameter model is
		  over parameterised, yet it is shown that additional data
		  from a simple tension test make the identification of
		  refined layer-specific data reliable. }
}

@Article{	  badia-codina-07,
  Author	= {Badia, S. and Codina, R.},
  Journal	= {Numer. Math.},
  Pages		= {533-557},
  Title		= {{Convergence analysis of the FEM approximation of the
		  first order projection method for incompressible flows with
		  and without the inf-sup condition}},
  Volume	= {107},
  Year		= {2007}
}

###Article{	  badia-codina-07,
  Author	= {Badia, S. and Codina, R.},
  Journal	= {Numer. Math.},
  Pages		= {533-557},
  Title		= {{Convergence analysis of the FEM approximation of the
		  first order projection method for incompressible flows with
		  and without the inf-sup condition}},
  Volume	= {107},
  Year		= {2007}
}

@Article{	  badia-nobile-vergara-08,
  Author	= {Badia, S. and Nobile, F. and Vergara, C.},
  Journal	= {J. Comp. Phys.},
  Pages		= {7027--7051},
  Title		= {Fluid-structure partitioned procedures based on {R}obin
		  transmission conditions},
  Volume	= {227},
  Year		= {2008}
}

###Article{	  badia-nobile-vergara-08,
  Author	= {Badia, S. and Nobile, F. and Vergara, C.},
  Journal	= {J. Comp. Phys.},
  Pages		= {7027--7051},
  Title		= {Fluid-structure partitioned procedures based on {R}obin
		  transmission conditions},
  Volume	= {227},
  Year		= {2008}
}

@Article{	  badia-quaini-quarteroni-08,
  Author	= {Badia, S. and Quaini, A. and Quarteroni, A.},
  Journal	= {SIAM J. Sci. Comput.},
  Number	= {4},
  Pages		= {1778--1805},
  Title		= {Splitting methods based on algebraic factorization for
		  fluid-structure interaction},
  Volume	= {30},
  Year		= {2008}
}

###Article{	  badia-quaini-quarteroni-08,
  Author	= {Badia, S. and Quaini, A. and Quarteroni, A.},
  Journal	= {SIAM J. Sci. Comput.},
  Number	= {4},
  Pages		= {1778--1805},
  Title		= {Splitting methods based on algebraic factorization for
		  fluid-structure interaction},
  Volume	= {30},
  Year		= {2008}
}

@Article{	  badiacodina07,
  Author	= "Badia, S. and Codina, R.",
  Title		= "{Convergence analysis of the FEM approximation of the
		  first order projection method for incompressible flows with
		  and without the inf-sup condition}",
  Journal	= "{Num. Math.}",
  Volume	= "107",
  Pages		= "533--557",
  Year		= "2007"
}

###Article{	  badiacodina07,
  Author	= "Badia, S. and Codina, R.",
  Title		= "{Convergence analysis of the FEM approximation of the
		  first order projection method for incompressible flows with
		  and without the inf-sup condition}",
  Journal	= "{Num. Math.}",
  Volume	= "107",
  Pages		= "533--557",
  Year		= "2007"
}

@Article{	  baek2005jelast,
  Title		= {Competition between radial expansion and thickening in the
		  enlargement of an intracranial saccular aneurysm},
  Author	= {Baek, S and Rajagopal, KR and Humphrey, JD},
  Journal	= {Journal of Elasticity},
  Year		= {2005},
  Number	= {1-3},
  Pages		= {13--31},
  Volume	= {80},
  File		= {baek05.pdf:baek05.pdf:PDF},
  Publisher	= {Springer},
  timestamp	= {2015/03/27}
}

@Article{	  baer-cairncross-schunk-sackinger-rao-00,
  Author	= {Baer, T.A. and Cairncross, R.A. and Schunk, P.R. and
		  Sackinger, P.A. and Rao, R.R.},
  code		= {mob6},
  Journal	= {Int. Jour. Num. Meth. Fluids},
  Pages		= {405-427},
  Title		= {A finite element method for free surface flows of
		  incompressible fluids in three dimensions. {Part II}:
		  dynamic wetting line},
  Volume	= {33},
  Year		= {2000}
}

###Article{	  baer-cairncross-schunk-sackinger-rao-00,
  Author	= {Baer, T.A. and Cairncross, R.A. and Schunk, P.R. and
		  Sackinger, P.A. and Rao, R.R.},
  code		= {mob6},
  Journal	= {Int. Jour. Num. Meth. Fluids},
  Pages		= {405-427},
  Title		= {A finite element method for free surface flows of
		  incompressible fluids in three dimensions. {Part II}:
		  dynamic wetting line},
  Volume	= {33},
  Year		= {2000}
}

@Article{	  baiocchi-brezzi-franca-93,
  Author	= {Baiocchi, C. and Brezzi, F. and Franca, L.P.},
  Journal	= {Comp. Meth. Appl. Mech. Eng.},
  Pages		= {125-141},
  Title		= {Virtual bubbles and {Galerkin}-least-squares type
		  methods},
  Volume	= {105},
  Year		= {1993}
}

###Article{	  baiocchi-brezzi-franca-93,
  Author	= {Baiocchi, C. and Brezzi, F. and Franca, L.P.},
  Journal	= {Comp. Meth. Appl. Mech. Eng.},
  Pages		= {125-141},
  Title		= {Virtual bubbles and {Galerkin}-least-squares type
		  methods},
  Volume	= {105},
  Year		= {1993}
}

@Article{	  balaban2017high,
  Title		= {High-resolution data assimilation of cardiac mechanics
		  applied to a dyssynchronous ventricle},
  Author	= {Balaban, Gabriel and Finsberg, Henrik and Odland, Hans
		  Henrik and Rognes, Marie E and Ross, Stian and Sundnes,
		  Joakim and Wall, Samuel},
  Journal	= {International journal for numerical methods in biomedical
		  engineering},
  Volume	= {33},
  Number	= {11},
  Pages		= {e2863},
  Year		= {2017},
  Publisher	= {Wiley Online Library}
}

@TechReport{	  balay_petsc_2018,
  Title		= {{{PETSc Users Manual}}},
  Author	= {Balay, Satish and Abhyankar, Shrirang and Adams, Mark F.
		  and Brown, Jed and Brune, Peter and Buschelman, Kris and
		  Dalcin, Lisandro and Dener, Alp and Eijkhout, Victor and
		  Gropp, William D. and Kaushik, Dinesh and Knepley, Matthew
		  G. and May, Dave A. and McInnes, Lois Curfman and Mills,
		  Richard Tran and Munson, Todd and Rupp, Karl and Sanan,
		  Patrick and Smith, Barry F. and Zampini, Stefano and Zhang,
		  Hong and Zhang, Hong},
  Year		= {2018},
  Institution	= {{Argonne National Laboratory}},
  Number	= {ANL-95/11 - Revision 3.10}
}

###Report{	  balay_petsc_2018,
  Title		= {{{PETSc Users Manual}}},
  URL		= {http://www.mcs.anl.gov/petsc},
  Number	= {ANL-95/11 - Revision 3.10},
  Institution	= {{Argonne National Laboratory}},
  Date		= {2018},
  Author	= {Balay, Satish and Abhyankar, Shrirang and Adams, Mark F.
		  and Brown, Jed and Brune, Peter and Buschelman, Kris and
		  Dalcin, Lisandro and Dener, Alp and Eijkhout, Victor and
		  Gropp, William D. and Kaushik, Dinesh and Knepley, Matthew
		  G. and May, Dave A. and McInnes, Lois Curfman and Mills,
		  Richard Tran and Munson, Todd and Rupp, Karl and Sanan,
		  Patrick and Smith, Barry F. and Zampini, Stefano and Zhang,
		  Hong and Zhang, Hong}
}

@Article{	  balocco-camara-frangi-08,
  Title		= {Towards regional elastography of intracranial aneurysms},
  Author	= {Balocco, S. and Camara, O. and Frangi, A.},
  Journal	= {Medical Image Computing and Computer-Assisted
		  Intervention--MICCAI 2008},
  Pages		= {131--138},
  Year		= {2008},
  Publisher	= {Springer}
}

###Article{	  balocco-camara-frangi-08,
  Title		= {Towards regional elastography of intracranial aneurysms},
  Author	= {Balocco, S. and Camara, O. and Frangi, A.},
  Journal	= {Medical Image Computing and Computer-Assisted
		  Intervention--MICCAI 2008},
  Pages		= {131--138},
  Year		= {2008},
  Publisher	= {Springer}
}

@Article{	  balocco-etal-07,
  Title		= {{Noninvasive Young's modulus evaluation of tissues
		  surrounding pulsatile vessels using ultrasound doppler
		  measurement}},
  Author	= {Balocco, S. and Basset, O. and Courbebaisse, G. and Boni,
		  E. and Tortoli, P. and Cachard, C.},
  Journal	= {Ultrasonics, Ferroelectrics and Frequency Control, IEEE
		  Transactions on},
  Volume	= {54},
  Number	= {6},
  Pages		= {1265--1271},
  Year		= {2007},
  Publisher	= {IEEE}
}

###Article{	  balocco-etal-07,
  Title		= {{Noninvasive Young's modulus evaluation of tissues
		  surrounding pulsatile vessels using ultrasound doppler
		  measurement}},
  Author	= {Balocco, S. and Basset, O. and Courbebaisse, G. and Boni,
		  E. and Tortoli, P. and Cachard, C.},
  Journal	= {Ultrasonics, Ferroelectrics and Frequency Control, IEEE
		  Transactions on},
  Volume	= {54},
  Number	= {6},
  Pages		= {1265--1271},
  Year		= {2007},
  Publisher	= {IEEE}
}

@Article{	  balocco-etal-10,
  Title		= {{Estimation of the viscoelastic properties of vessel walls
		  using a computational model and Doppler ultrasound}},
  Author	= {Balocco, S. and Basset, O. and Courbebaisse, G. and Boni,
		  E. and Frangi, A.F. and Tortoli, P. and Cachard, C.},
  Journal	= {Physics in Medicine and Biology},
  Volume	= {55},
  Number	= {12},
  Pages		= {3557},
  Year		= {2010},
  Publisher	= {IOP Publishing}
}

###Article{	  balocco-etal-10,
  Title		= {{Estimation of the viscoelastic properties of vessel walls
		  using a computational model and Doppler ultrasound}},
  Author	= {Balocco, S. and Basset, O. and Courbebaisse, G. and Boni,
		  E. and Frangi, A.F. and Tortoli, P. and Cachard, C.},
  Journal	= {Physics in Medicine and Biology},
  Volume	= {55},
  Number	= {12},
  Pages		= {3557},
  Year		= {2010},
  Publisher	= {IOP Publishing}
}

@Article{	  balossino_computational_2009,
  Title		= {Computational Models to Predict Stenosis Growth in Carotid
		  Arteries: Which Is the Role of Boundary Conditions?},
  Volume	= {12},
  ShortTitle	= {Computational Models to Predict Stenosis Growth in Carotid
		  Arteries},
  Number	= {1},
  JournalTitle	= {Computer methods in biomechanics and biomedical
		  engineering},
  Year		= {2009},
  Pages		= {113--123},
  Author	= {Balossino, R. and Pennati, Giancarlo and Migliavacca,
		  Francesco and Formaggia, Luca and Veneziani, A. and Tuveri,
		  M. and Dubini, G.}
}

@Article{	  bang-lukkassen-99,
  Author	= {Bang, B. and Lukkassen, D.},
  fjournal	= {Applications of Mathematics},
  Journal	= {Appl. Math.},
  Number	= {4},
  Pages		= {309--319},
  Title		= {Application of homogenization theory related to {S}tokes
		  flow in porous media},
  Volume	= {44},
  Year		= {1999}
}

###Article{	  bang-lukkassen-99,
  Author	= {Bang, B. and Lukkassen, D.},
  fjournal	= {Applications of Mathematics},
  Journal	= {Appl. Math.},
  Number	= {4},
  Pages		= {309--319},
  Title		= {Application of homogenization theory related to {S}tokes
		  flow in porous media},
  Volume	= {44},
  Year		= {1999}
}

@Book{		  bankkunisch1989book,
  Title		= {Estimation techniques for distributed parameter systems},
  Author	= {Banks, H. T. and Kunisch, K.},
  Publisher	= {Birkh\"auser Boston Inc.},
  Year		= {1989},
  Address	= {Boston, MA},
  Series	= {Systems \& Control: Foundations \& Applications},
  Volume	= {1},
  date-added	= {2009-03-10 18:50:38 -0700},
  date-modified	= {2009-03-10 18:50:45 -0700}
}

@Book{		  banks-kunisch-89,
  Address	= {Boston, MA},
  Author	= {Banks, H. T. and Kunisch, K.},
  date-added	= {2009-03-10 18:50:38 -0700},
  date-modified	= {2009-03-10 18:50:45 -0700},
  Publisher	= {Birkh\"auser Boston Inc.},
  Series	= {Systems \& Control: Foundations \& Applications},
  Title		= {Estimation techniques for distributed parameter systems},
  Volume	= {1},
  Year		= {1989}
}

###Book{	  banks-kunisch-89,
  Address	= {Boston, MA},
  Author	= {Banks, H. T. and Kunisch, K.},
  date-added	= {2009-03-10 18:50:38 -0700},
  date-modified	= {2009-03-10 18:50:45 -0700},
  Publisher	= {Birkh\"auser Boston Inc.},
  Series	= {Systems \& Control: Foundations \& Applications},
  Title		= {Estimation techniques for distributed parameter systems},
  Volume	= {1},
  Year		= {1989}
}

@Article{	  bansch2016posteriori,
  Title		= {A Posteriori Error Estimates for Pressure-Correction
		  Schemes},
  Author	= {BaÌnsch, E and Brenner, A},
  Journal	= {SIAM Journal on Numerical Analysis},
  Volume	= {54},
  Number	= {4},
  Pages		= {2323--2358},
  Year		= {2016},
  Publisher	= {SIAM}
}

@Article{	  bao2003noise,
  Title		= {Noise reduction for magnetic resonance images via adaptive
		  multiscale products thresholding},
  Author	= {Bao, Paul and Zhang, Lei},
  Journal	= {Medical Imaging, IEEE Transactions on},
  Volume	= {22},
  Number	= {9},
  Pages		= {1089--1099},
  Year		= {2003},
  Publisher	= {IEEE}
}

###Article{	  bao2003noise,
  Title		= {Noise reduction for magnetic resonance images via adaptive
		  multiscale products thresholding},
  Author	= {Bao, Paul and Zhang, Lei},
  Journal	= {Medical Imaging, IEEE Transactions on},
  Volume	= {22},
  Number	= {9},
  Pages		= {1089--1099},
  Year		= {2003},
  Publisher	= {IEEE}
}

@InProceedings{	  baranger-guillope-saut-96,
  Author	= {Baranger, J. and Guillope, C. and Saut, J-C.},
  BookTitle	= {Rheology for polymer melt processing},
  Editor	= {Piau, J-M. and Agassant, J-F.},
  Publisher	= {Elsevier Sciences},
  Title		= {Mathematical analysis of differential models for
		  viscoelastics fluids},
  Year		= {1996}
}

###InProceedings{ baranger-guillope-saut-96,
  Author	= {Baranger, J. and Guillope, C. and Saut, J-C.},
  BookTitle	= {Rheology for polymer melt processing},
  Editor	= {Piau, J-M. and Agassant, J-F.},
  Publisher	= {Elsevier Sciences},
  Title		= {Mathematical analysis of differential models for
		  viscoelastics fluids},
  Year		= {1996}
}

@PhdThesis{	  barbe-2001,
  Author	= {Barbe, L.},
  School	= {Univ. Paris 7},
  Title		= {M{\'e}canismes d'adh{\'e}rence des leucocytes aux fibres
		  synth{\'e}tiques. Application {\`a} la filtration du sang.},
  Year		= {2002}
}

###PhdThesis{	  barbe-2001,
  Author	= {Barbe, L.},
  School	= {Univ. Paris 7},
  Title		= {M{\'e}canismes d'adh{\'e}rence des leucocytes aux fibres
		  synth{\'e}tiques. Application {\`a} la filtration du sang.},
  Year		= {2002}
}

@Article{	  barber-etal-07,
  Title		= "Efficient computational fluid dynamics mesh generation by
		  image registration",
  Journal	= "Medical Image Analysis",
  Volume	= "11",
  Number	= "6",
  Pages		= "648 - 662",
  Year		= "2007",
  Note		= "",
  ISSN		= "1361-8415",
  DOI		= "10.1016/j.media.2007.06.011",
  Author	= "D.C. Barber and E. Oubel and A.F. Frangi and D.R. Hose",
  Keywords	= "CFD"
}

###Article{	  barber-etal-07,
  Title		= "Efficient computational fluid dynamics mesh generation by
		  image registration",
  Journal	= "Medical Image Analysis",
  Volume	= "11",
  Number	= "6",
  Pages		= "648 - 662",
  Year		= "2007",
  Note		= "",
  ISSN		= "1361-8415",
  DOI		= "10.1016/j.media.2007.06.011",
  Author	= "D.C. Barber and E. Oubel and A.F. Frangi and D.R. Hose",
  Keywords	= "CFD"
}

@Article{	  barber-etal-12,
  Title		= "Registration based segment growing for vascular
		  segmentation",
  Journal	= "Submitted to IEEE Transactions on Medical Imaging",
  Volume	= "",
  Number	= "",
  Pages		= "",
  Year		= "2012",
  Note		= "",
  ISSN		= "",
  DOI		= "",
  Author	= "Barber, D.C. and Staicu, C. and Valverde, I. and Beerbaum,
		  P. and Hose, D.R.",
  Keywords	= "CFD"
}

###Article{	  barber-etal-12,
  Title		= "Registration based segment growing for vascular
		  segmentation",
  Journal	= "Submitted to IEEE Transactions on Medical Imaging",
  Volume	= "",
  Number	= "",
  Pages		= "",
  Year		= "2012",
  Note		= "",
  ISSN		= "",
  DOI		= "",
  Author	= "Barber, D.C. and Staicu, C. and Valverde, I. and Beerbaum,
		  P. and Hose, D.R.",
  Keywords	= "CFD"
}

@Article{	  baretta_virtual_2011,
  langid	= {english},
  Title		= {Virtual Surgeries in Patients with Congenital Heart
		  Disease: A Multi-Scale Modelling Test Case},
  URL		= {https://royalsocietypublishing.org/doi/abs/10.1098/rsta.2011.0130},
  ShortTitle	= {Virtual Surgeries in Patients with Congenital Heart
		  Disease},
  Abstract	= {The objective of this work is to perform a virtual
		  planning of surgical repairs in patients with congenital
		  heart diseasesto test the predictive capability of a
		  closed-loop multi-scale model. As a first step, we
		  reproduced the pre-operative state of a specific patient
		  with a univentricular circulation and a bidirectional
		  cavopulmonary anastomosis (BCPA), starting from the
		  patient's clinical data. Namely, by adopting a closed-loop
		  multi-scale approach, the boundary conditions at the inlet
		  and outlet sections of the three-dimensional model were
		  automatically calculated by a lumped parameter network.
		  Successively, we simulated three alternative surgical
		  designs of the total cavopulmonary connection (TCPC). In
		  particular, a T-junction of the venae cavae to the
		  pulmonary arteries (T-TCPC), a design with an offset
		  between the venae cavae (O-TCPC) and a Y-graft design
		  (Y-TCPC) were compared. A multi-scale closed-loop model
		  consisting of a lumped parameter network representing the
		  whole circulation and a patient-...},
  JournalTitle	= {Philosophical Transactions of the Royal Society A:
		  Mathematical, Physical and Engineering Sciences},
  URLDate	= {2019-03-09},
  Year		= {2011-11-13},
  Author	= {Baretta, A. and Corsini, C. and Yang, W. and
		  Vignon-Clementel, I. E. and Marsden, A. L. and Feinstein,
		  J. A. and Hsia, T.-Y. and Dubini, G. and Migliavacca, F.
		  and Pennati, G. and Investigators, The Modeling of
		  Congenital Hearts Alliance (MOCHA)}
}

@Book{		  barret-94,
  Author	= {R. Barrett and M. Berry and T. F. Chan and J. Demmel and
		  J. Donato and J. Dongarra and V. Eijkhout and R. Pozo and
		  C. Romine and H. Van der Vorst },
  Publisher	= {SIAM},
  Title		= {Templates for the Solution of Linear Systems: Building
		  Blocks for Iterative Methods, 2nd Edition},
  Year		= {1994}
}

###Book{	  barret-94,
  Author	= {R. Barrett and M. Berry and T. F. Chan and J. Demmel and
		  J. Donato and J. Dongarra and V. Eijkhout and R. Pozo and
		  C. Romine and H. Van der Vorst },
  Publisher	= {SIAM},
  Title		= {Templates for the Solution of Linear Systems: Building
		  Blocks for Iterative Methods, 2nd Edition},
  Year		= {1994}
}

@Article{	  barrett-01,
  Author	= {Barrett, K.E.},
  code		= {mhd40},
  Journal	= {Int. J. Numer. Meth. Engng},
  Pages		= {1893-1906},
  Title		= {Duct flow with a transverse magnetic field at high
		  Hartmann numbers},
  Volume	= {50},
  Year		= {2001}
}

###Article{	  barrett-01,
  Author	= {Barrett, K.E.},
  code		= {mhd40},
  Journal	= {Int. J. Numer. Meth. Engng},
  Pages		= {1893-1906},
  Title		= {Duct flow with a transverse magnetic field at high
		  Hartmann numbers},
  Volume	= {50},
  Year		= {2001}
}

@Article{	  baskurt_blood_2003,
  langid	= {english},
  Title		= {Blood Rheology and Hemodynamics},
  Volume	= {29},
  ISSN		= {0094-6176},
  DOI		= {10.1055/s-2003-44551},
  Abstract	= {Blood is a two-phase suspension of formed elements (i.e.,
		  red blood cells [RBCs], white blood cells [WBCs],
		  platelets) suspended in an aqueous solution of organic
		  molecules, proteins, and salts called plasma. The apparent
		  viscosity of blood depends on the existing shear forces
		  (i.e., blood behaves as a non-Newtonian fluid) and is
		  determined by hematocrit, plasma viscosity, RBC
		  aggregation, and the mechanical properties of RBCs. RBCs
		  are highly deformable, and this physical property
		  significantly contributes to aiding blood flow both under
		  bulk flow conditions and in the microcirculation. The
		  tendency of RBCs to undergo reversible aggregation is an
		  important determinant of apparent viscosity because the
		  size of RBC aggregates is inversely proportional to the
		  magnitude of shear forces; the aggregates are dispersed
		  with increasing shear forces, then reform under low-flow or
		  static conditions. RBC aggregation also affects the in vivo
		  fluidity of blood, especially in the low-shear regions of
		  the circulatory system. Blood rheology has been reported to
		  be altered in various physiopathological processes: (1)
		  Alterations of hematocrit significantly contribute to
		  hemorheological variations in diseases and in certain
		  extreme physiological conditions; (2) RBC deformability is
		  sensitive to local and general homeostasis, with RBC
		  deformability affected by alterations of the properties and
		  associations of membrane skeletal proteins, the ratio of
		  RBC membrane surface area to cell volume, cell morphology,
		  and cytoplasmic viscosity. Such alterations may result from
		  genetic disorders or may be induced by such factors as
		  abnormal local tissue metabolism, oxidant stress, and
		  activated leukocytes; and (3) RBC aggregation is mainly
		  determined by plasma protein composition and surface
		  properties of RBCs, with increased plasma concentrations of
		  acute phase reactants in inflammatory disorders a common
		  cause of increased RBC aggregation. In addition, RBC
		  aggregation tendency can be modified by alterations of RBC
		  surface properties because of RBC in vivo aging,
		  oxygen-free radicals, or proteolytic enzymes. Impairment of
		  blood fluidity may significantly affect tissue perfusion
		  and result in functional deteriorations, especially if
		  disease processes also disturb vascular properties.},
  Number	= {5},
  JournalTitle	= {Seminars in Thrombosis and Hemostasis},
  ShortJournal	= {Semin. Thromb. Hemost.},
  Year		= {2003-10},
  Pages		= {435-450},
  Author	= {Baskurt, Oguz K. and Meiselman, Herbert J.},
  EPrintType	= {pmid},
  EPrint	= {14631543}
}

@Collection{	  baskurt_handbook_2007,
  Location	= {{Amsterdam ; Washington, DC}},
  Title		= {Handbook of Hemorheology and Hemodynamics},
  ISBN		= {978-1-58603-771-0},
  PageTotal	= {455},
  Number	= {v. 69},
  Series	= {Biomedical and Health Research},
  Publisher	= {{IOS Press}},
  Year		= {2007},
  Editor	= {Baskurt, OÄuz K.},
  Note		= {OCLC: ocn183145995}
}

@Article{	  basser1994,
  Title		= {{Estimation of the Effective Self-Diffusion Tensor from
		  the NMR Spin Echo}},
  Journal	= "Journal of Magnetic Resonance, Series B",
  Volume	= "103",
  Number	= "3",
  Pages		= "247 - 254",
  Year		= "1994",
  Note		= "",
  ISSN		= "1064-1866",
  Author	= "P.J. Basser and J. Mattiello and D. Lebihan"
}

@Book{		  batchelor_introduction_2010,
  langid	= {english},
  Location	= {{Cambridge}},
  Title		= {An Introduction to Fluid Dynamics},
  Edition	= {1. Cambridge mathematical ed., 14. print},
  ISBN		= {978-0-521-66396-0},
  PageTotal	= {615},
  Series	= {Cambridge Mathematical Library},
  Publisher	= {{Cambridge Univ. Press}},
  Date		= {2010},
  Author	= {Batchelor, G. K.},
  Note		= {OCLC: 838184093}
}

@Book{		  bathe-96,
  Author	= {Bathe, K.J.},
  Publisher	= {Prentice Hall},
  Title		= {Finite Element Procedures},
  Year		= 1996
}

###Book{	  bathe-96,
  Author	= {Bathe, K.J.},
  Publisher	= {Prentice Hall},
  Title		= {Finite Element Procedures},
  Year		= 1996
}

@Article{	  bathe-kamm-99,
  Author	= {Bathe, M. and Kamm, R.D.},
  code		= {fsi10},
  Journal	= {J. Biomech. Engng.},
  Pages		= {361-369},
  Title		= {A fluid-structure interaction finite element analysis of
		  pulsative blood flow through a compliant stenotic artery},
  Volume	= {121},
  Year		= {1999}
}

###Article{	  bathe-kamm-99,
  Author	= {Bathe, M. and Kamm, R.D.},
  code		= {fsi10},
  Journal	= {J. Biomech. Engng.},
  Pages		= {361-369},
  Title		= {A fluid-structure interaction finite element analysis of
		  pulsative blood flow through a compliant stenotic artery},
  Volume	= {121},
  Year		= {1999}
}

@Article{	  bathe-zhang-04,
  Author	= {Bathe, K.J. and Zhang, H.},
  Journal	= {Int. J. Num. Meth. Engng.},
  Title		= {Finite element developments for general fluid flows with
		  structural interactions},
  Year		= {2004}
}

###Article{	  bathe-zhang-04,
  Author	= {Bathe, K.J. and Zhang, H.},
  Journal	= {Int. J. Num. Meth. Engng.},
  Title		= {Finite element developments for general fluid flows with
		  structural interactions},
  Year		= {2004}
}

@Article{	  bathe-zhang-ji-99,
  Author	= {Bathe, K.J. and Zhang, H. and Ji, S.},
  Journal	= {Comp. \& Struct.},
  Number	= {1-3},
  Pages		= {1-16},
  Title		= {Finite element analysis of fluid flows fully coupled with
		  structural interaction},
  Volume	= {72},
  Year		= {1999}
}

###Article{	  bathe-zhang-ji-99,
  Author	= {Bathe, K.J. and Zhang, H. and Ji, S.},
  Journal	= {Comp. \& Struct.},
  Number	= {1-3},
  Pages		= {1-16},
  Title		= {Finite element analysis of fluid flows fully coupled with
		  structural interaction},
  Volume	= {72},
  Year		= {1999}
}

@Article{	  baumgartner2009echo,
  Title		= "Echocardiographic Assessment of Valve Stenosis: EAE/ASE
		  Recommendations for Clinical Practice",
  Author	= "Helmut Baumgartner and Judy Hung and Javier Bermejo and
		  Chambers, {John B.} and Arturo Evangelista and Griffin,
		  {Brian P.} and Bernard Iung and Otto, {Catherine M.} and
		  Pellikka, {Patricia A.} and Miguel QuiÃ±ones",
  Year		= "2009",
  Month		= "1",
  DOI		= "10.1016/j.echo.2008.11.029",
  Volume	= "22",
  Pages		= "1--23",
  Journal	= "Journal of the American Society of Echocardiography",
  ISSN		= "0894-7317",
  Publisher	= "Mosby Inc.",
  Number	= "1"
}

@Article{	  baumgartner_echocardiographic_2009,
  langid	= {english},
  Title		= {Echocardiographic {{Assessment}} of {{Valve Stenosis}}:
		  {{EAE}}/{{ASE Recommendations}} for {{Clinical Practice}}},
  Volume	= {22},
  ISSN		= {08947317},
  URL		= {https://linkinghub.elsevier.com/retrieve/pii/S0894731708007761},
  DOI		= {10.1016/j.echo.2008.11.029},
  ShortTitle	= {Echocardiographic {{Assessment}} of {{Valve Stenosis}}},
  Number	= {1},
  JournalTitle	= {Journal of the American Society of Echocardiography},
  URLDate	= {2019-02-09},
  Year		= {2009-01},
  Pages		= {1-23},
  Author	= {Baumgartner, Helmut and Hung, Judy and Bermejo, Javier and
		  Chambers, John B. and Evangelista, Arturo and Griffin,
		  Brian P. and Iung, Bernard and Otto, Catherine M. and
		  Pellikka, Patricia A. and Qui\~{}nones, Miguel}
}

@Article{	  baumgartner_esc_2010,
  Title		= {{{ESC Guidelines}} for the Management of Grown-up
		  Congenital Heart Disease (New Version 2010) {{The Task
		  Force}} on the {{Management}} of {{Grown}}-up {{Congenital
		  Heart Disease}} of the {{European Society}} of
		  {{Cardiology}} ({{ESC}})},
  Volume	= {31},
  Number	= {23},
  JournalTitle	= {European heart journal},
  Year		= {2010},
  Pages		= {2915--2957},
  Author	= {Baumgartner, Helmut and Bonhoeffer, Philipp and De Groot,
		  Natasja MS and de Haan, Fokko and Deanfield, John Erik and
		  Galie, Nazzareno and Gatzoulis, Michael A. and
		  Gohlke-Baerwolf, Christa},
  Options	= {useprefix=true}
}

@Article{	  baumgartner_overestimation_1999,
  Title		= {?Overestimation? of catheter gradients by Doppler
		  ultrasound in patients with aortic stenosis: a predictable
		  manifestation of pressure recovery},
  Author	= {Baumgartner, Helmut and Stefenelli, Thomas and
		  Niederberger, Julia and Schima, Heinrich and Maurer,
		  Gerald},
  Journal	= {Journal of the American College of Cardiology},
  Volume	= {33},
  Number	= {6},
  Pages		= {1655--1661},
  Year		= {1999},
  Publisher	= {Journal of the American College of Cardiology}
}

@Article{	  bayer-etal-12,
  Year		= {2012},
  ISSN		= {0090-6964},
  Journal	= {Annals of Biomedical Engineering},
  Volume	= {40},
  Issue		= {10},
  Title		= {A Novel Rule-Based Algorithm for Assigning Myocardial
		  Fiber Orientation to Computational Heart Models},
  Publisher	= {Springer US},
  Keywords	= {Diffusion tensor; Magnetic resonance; Imaging; Finite
		  element; Mesh; LaplaceâDirichlet},
  Author	= {Bayer, J.D. and Blake, R.C. and Plank, G. and Trayanova,
		  N.A.},
  Pages		= {2243-2254},
  Language	= {English}
}

@Article{	  bazilevs-gohean-hughes-09,
  Author	= {Bazilevs, Y. and Gohean, JR and Hughes, TJR and Moser, RD
		  and Zhang, Y.},
  Journal	= {Computer Methods in Applied Mechanics and Engineering},
  Number	= {45-46},
  Pages		= {3534--3550},
  Publisher	= {Elsevier},
  Title		= {Patient-specific isogeometric fluid-structure interaction
		  analysis of thoracic aortic blood flow due to implantation
		  of the Jarvik 2000 left ventricular assist device},
  Volume	= {198},
  Year		= {2009}
}

###Article{	  bazilevs-gohean-hughes-09,
  Author	= {Bazilevs, Y. and Gohean, JR and Hughes, TJR and Moser, RD
		  and Zhang, Y.},
  Journal	= {Computer Methods in Applied Mechanics and Engineering},
  Number	= {45-46},
  Pages		= {3534--3550},
  Publisher	= {Elsevier},
  Title		= {Patient-specific isogeometric fluid-structure interaction
		  analysis of thoracic aortic blood flow due to implantation
		  of the Jarvik 2000 left ventricular assist device},
  Volume	= {198},
  Year		= {2009}
}

@Article{	  bazilevs_variational_2007,
  Title		= {Variational Multiscale Residual-Based Turbulence Modeling
		  for Large Eddy Simulation of Incompressible Flows},
  Volume	= {197},
  URL		= {http://www.sciencedirect.com/science/article/pii/S0045782507003027},
  Number	= {1},
  JournalTitle	= {Computer Methods in Applied Mechanics and Engineering},
  URLDate	= {2016-11-06},
  Date		= {2007},
  Pages		= {173--201},
  Author	= {Bazilevs, Y. and Calo, V. M. and Cottrell, J. A. and
		  Hughes, T. J. R. and Reali, A. and Scovazzi, G.}
}

@Article{	  beale-81,
  Author	= {Beale, J.T.},
  Journal	= {Comm. Pure Appl. Math.},
  Pages		= {359-392},
  Title		= {The initial value problem for the {Navier-Stokes}
		  equations with a free surface},
  Volume	= {34},
  Year		= {1981}
}

###Article{	  beale-81,
  Author	= {Beale, J.T.},
  Journal	= {Comm. Pure Appl. Math.},
  Pages		= {359-392},
  Title		= {The initial value problem for the {Navier-Stokes}
		  equations with a free surface},
  Volume	= {34},
  Year		= {1981}
}

@Article{	  beale-84,
  Author	= {Beale, J.T.},
  Journal	= {Arch. Rat. Mech. Anal.},
  Pages		= {307-352},
  Title		= {Large time regularity of viscous surface waves},
  Volume	= {84},
  Year		= {1984}
}

###Article{	  beale-84,
  Author	= {Beale, J.T.},
  Journal	= {Arch. Rat. Mech. Anal.},
  Pages		= {307-352},
  Title		= {Large time regularity of viscous surface waves},
  Volume	= {84},
  Year		= {1984}
}

@Article{	  beale-hou-lowengrub-93,
  Author	= {Beale, J.T. and Hou, T.Y. and Lowengrub, J.S.},
  Journal	= {Comm. Pure Appl. Math.},
  Pages		= {1269-1301},
  Title		= {Growth rates for the linearized motion of fluid interfaces
		  away from equilibrium},
  Volume	= {46},
  Year		= {1993}
}

###Article{	  beale-hou-lowengrub-93,
  Author	= {Beale, J.T. and Hou, T.Y. and Lowengrub, J.S.},
  Journal	= {Comm. Pure Appl. Math.},
  Pages		= {1269-1301},
  Title		= {Growth rates for the linearized motion of fluid interfaces
		  away from equilibrium},
  Volume	= {46},
  Year		= {1993}
}

@InCollection{	  beale-nishida-85,
  Author	= {Beale, J.T. and Nishida, T.},
  BookTitle	= {Recent topics in nonlinear {PDE II}},
  Pages		= {1-14},
  Publisher	= {North-Holland},
  Series	= {Lect. Notes Numer. Appl. Anal.},
  Title		= {Large-time behaviour of viscous surface waves},
  Volume	= {8},
  Year		= {1985}
}

###InCollection{  beale-nishida-85,
  Author	= {Beale, J.T. and Nishida, T.},
  BookTitle	= {Recent topics in nonlinear {PDE II}},
  Pages		= {1-14},
  Publisher	= {North-Holland},
  Series	= {Lect. Notes Numer. Appl. Anal.},
  Title		= {Large-time behaviour of viscous surface waves},
  Volume	= {8},
  Year		= {1985}
}

@Article{	  becker-braack-vexler-05,
  Author	= {Becker, R. and Braack, M. and Vexler, B.},
  Title		= {Parameter identification for chemical models in combustion
		  problems},
  Journal	= {Appl. Numer. Math.},
  Volume	= {54},
  Year		= {2005},
  Number	= {3-4},
  Pages		= {519--536}
}

###Article{	  becker-braack-vexler-05,
  Author	= {Becker, R. and Braack, M. and Vexler, B.},
  Title		= {Parameter identification for chemical models in combustion
		  problems},
  Journal	= {Appl. Numer. Math.},
  Volume	= {54},
  Year		= {2005},
  Number	= {3-4},
  Pages		= {519--536}
}

@Article{	  becker-hansbo-stenberg-03,
  Author	= {Becker, R. and Hansbo, P. and Stenberg, R.},
  Journal	= {M2AN Math. Model. Numer. Anal.},
  Number	= {2},
  Pages		= {209--225},
  Title		= {A finite element method for domain decomposition with
		  non-matching grids},
  Volume	= {37},
  Year		= {2003}
}

###Article{	  becker-hansbo-stenberg-03,
  Author	= {Becker, R. and Hansbo, P. and Stenberg, R.},
  Journal	= {M2AN Math. Model. Numer. Anal.},
  Number	= {2},
  Pages		= {209--225},
  Title		= {A finite element method for domain decomposition with
		  non-matching grids},
  Volume	= {37},
  Year		= {2003}
}

@Article{	  becker03,
  Author	= "Becker, R. and Hansbo, P. and Stenberg, R.",
  Title		= "{A finite element method for domain decomposition with
		  non-matching grids}",
  Journal	= m2an,
  Volume	= "37",
  Number	= "2",
  Pages		= "209--225",
  Year		= "2003"
}

###Article{	  becker03,
  Author	= "Becker, R. and Hansbo, P. and Stenberg, R.",
  Title		= "{A finite element method for domain decomposition with
		  non-matching grids}",
  Journal	= m2an,
  Volume	= "37",
  Number	= "2",
  Pages		= "209--225",
  Year		= "2003"
}

@Book{		  becker1996weighted,
  Title		= {Weighted a posteriori error control in FE methods},
  Author	= {Becker, Roland and Rannacher, Rolf},
  Year		= {1996},
  Publisher	= {Citeseer}
}

@Article{	  beekman-etal-83,
  Author	= {Beekman, R.H. and Katz, B.P. and Moorehead-Steffens, C.
		  and Rocchini, A.P.},
  Title		= {Altered baroreceptor function in children with systolic
		  hypertension after coarctation repair},
  Journal	= {Am J Cardiol},
  Volume	= {52},
  Year		= {1983},
  Number	= {1},
  Pages		= {112-7},
  pubmedid	= {6858899},
  ISSN		= {0002-9149}
}

###Article{	  beekman-etal-83,
  Author	= {Beekman, R.H. and Katz, B.P. and Moorehead-Steffens, C.
		  and Rocchini, A.P.},
  Title		= {Altered baroreceptor function in children with systolic
		  hypertension after coarctation repair},
  Journal	= {Am J Cardiol},
  Volume	= {52},
  Year		= {1983},
  Number	= {1},
  Pages		= {112-7},
  URL		= {http://www.biomedsearch.com/nih/Altered-baroreceptor-function-in-children/6858899.html},
  pubmedid	= {6858899},
  ISSN		= {0002-9149}
}

@InCollection{	  begue-conca-murat-pironneau-88,
  Address	= {Harlow},
  Author	= {B{\`e}gue, C. and Conca, C. and Murat, F. and Pironneau,
		  O.},
  BookTitle	= {Nonlinear partial differential equations and their
		  applications. Coll{\`e}ge de France Seminar, Vol.\ IX
		  (Paris, 1985--1986)},
  Pages		= {179--264},
  Publisher	= {Longman Sci. Tech.},
  Title		= {Les {\'e}quations de {S}tokes et de {N}avier-{S}tokes avec
		  des conditions aux limites sur la pression},
  Year		= {1988}
}

###InCollection{  begue-conca-murat-pironneau-88,
  Address	= {Harlow},
  Author	= {B{\`e}gue, C. and Conca, C. and Murat, F. and Pironneau,
		  O.},
  BookTitle	= {Nonlinear partial differential equations and their
		  applications. Coll{\`e}ge de France Seminar, Vol.\ IX
		  (Paris, 1985--1986)},
  Pages		= {179--264},
  Publisher	= {Longman Sci. Tech.},
  Title		= {Les {\'e}quations de {S}tokes et de {N}avier-{S}tokes avec
		  des conditions aux limites sur la pression},
  Year		= {1988}
}

@Article{	  beirao-96,
  Author	= {Beirao da Veiga, H.},
  Journal	= {Nonlinear Anal., Theory, Meth. Appl.},
  Number	= {11},
  Pages		= {1229-1239},
  Title		= {Long time behaviour of the solutions to the
		  {Navier-Stokes} equations with diffusion},
  Volume	= {27},
  Year		= {1996}
}

###Article{	  beirao-96,
  Author	= {Beirao da Veiga, H.},
  Journal	= {Nonlinear Anal., Theory, Meth. Appl.},
  Number	= {11},
  Pages		= {1229-1239},
  Title		= {Long time behaviour of the solutions to the
		  {Navier-Stokes} equations with diffusion},
  Volume	= {27},
  Year		= {1996}
}

@Article{	  bel-brunon2014jmbbm,
  Title		= {Numerical identification method for the non-linear
		  viscoelastic compressible behavior of soft tissue using
		  uniaxial tensile tests and image registration ? Application
		  to rat lung parenchyma },
  Author	= {A. Bel-Brunon and S. Kehl and C. Martin and S. Uhlig and
		  W.A. Wall},
  Journal	= {Journal of the Mechanical Behavior of Biomedical Materials
		  },
  Year		= {2014},
  Pages		= {360 - 374},
  Volume	= {29},
  Abstract	= {Abstract This paper presents an improved identification
		  method of the constitutive properties of lung parenchyma.
		  We aim to determine the non-linear viscoelastic behavior of
		  lung parenchyma with a particular focus on the compressible
		  properties - i.e. the ability to change volume. Uniaxial
		  tensile tests are performed on living precision-cut rat
		  lung slices. Image registration is used to compute the
		  displacement field at the surface of the sample. The
		  constitutive model consists of a hyperelastic potential
		  split into volumetric and isochoric contributions and a
		  viscous contribution. This allows for the description of
		  the experimentally observed hysteresis loop. The
		  identification is performed numerically: each test is
		  simulated using the realistic geometry of the sample; the
		  difference between the measured and computed displacements
		  is minimized with an optimization algorithm. We compare
		  several hyperelastic potentials and we can determine the
		  most suitable law for rat lung parenchyma. An exponential
		  potential or a polynomial potential with a first order term
		  and a third or higher order term give similarly
		  satisfactory results. The identified parameters are: for
		  the volumetric contribution: ? =7.25e4 Pa, for the
		  exponential form: k1=4.34e3 Pa, k2=5.92, for the polynomial
		  form: C1=2.87e3 Pa, C3=3.83e4 Pa. The identification of the
		  time parameter for the viscous contribution shows that it
		  depends on the loading frequency (0.2 Hz: ? =0.257 s, 0.4
		  Hz: ? =0.123 s, 0.8 Hz: ? =0.050 s). Adding a viscous
		  contribution significantly increases the accuracy of the
		  identification. },
  DOI		= {http://dx.doi.org/10.1016/j.jmbbm.2013.09.018},
  File		= {bel-brunon14.pdf:bel-brunon14.pdf:PDF},
  ISSN		= {1751-6161},
  Keywords	= {Lung parenchyma},
  timestamp	= {2015/09/23},
  URL		= {http://www.sciencedirect.com/science/article/pii/S1751616113003196}
}

@Unpublished{	  belhadj,
  Author	= {Belhadj, M.},
  Note		= {Thesis in preparation, Univ. Paris 6 and ENIT},
  Title		= {Modelling and simulation of white blood cells filtration}
}

###Unpublished{	  belhadj,
  Author	= {Belhadj, M.},
  Note		= {Thesis in preparation, Univ. Paris 6 and ENIT},
  Title		= {Modelling and simulation of white blood cells filtration}
}

@Unpublished{	  belhadj-cances-gerbeau-mikelic,
  Author	= {Belhadj, M. and Canc{\`e}s, E. and Gerbeau, J.F. and
		  Mikelic, A.},
  Note		= {INRIA Research Report No 5277, 2004},
  Title		= { Homogenization approach to filtration through a fibrous
		  medium}
}

###Unpublished{	  belhadj-cances-gerbeau-mikelic,
  Author	= {Belhadj, M. and Canc{\`e}s, E. and Gerbeau, J.F. and
		  Mikelic, A.},
  Note		= {INRIA Research Report No 5277, 2004},
  Title		= { Homogenization approach to filtration through a fibrous
		  medium}
}

@Article{	  belhadj-gerbeau-perthame-03,
  Author	= {Belhadj, M. and Gerbeau, J-F. and Perthame, B.},
  Journal	= {Asymptotic Analysis},
  Number	= {1},
  Pages		= {41-54},
  Title		= { A multiscale colloid transport model with anistropic
		  degenerate diffusion},
  Volume	= {34},
  Year		= {2003}
}

###Article{	  belhadj-gerbeau-perthame-03,
  Author	= {Belhadj, M. and Gerbeau, J-F. and Perthame, B.},
  Journal	= {Asymptotic Analysis},
  Number	= {1},
  Pages		= {41-54},
  Title		= { A multiscale colloid transport model with anistropic
		  degenerate diffusion},
  Volume	= {34},
  Year		= {2003}
}

@Article{	  beliaev-kozlov-96,
  Author	= {Beliaev, A. Yu. and Kozlov, S. M.},
  fjournal	= {Communications on Pure and Applied Mathematics},
  Journal	= {Comm. Pure Appl. Math.},
  Number	= {1},
  Pages		= {1--34},
  Title		= {Darcy equation for random porous media},
  Volume	= {49},
  Year		= {1996}
}

###Article{	  beliaev-kozlov-96,
  Author	= {Beliaev, A. Yu. and Kozlov, S. M.},
  fjournal	= {Communications on Pure and Applied Mathematics},
  Journal	= {Comm. Pure Appl. Math.},
  Number	= {1},
  Pages		= {1--34},
  Title		= {Darcy equation for random porous media},
  Volume	= {49},
  Year		= {1996}
}

@Book{		  bellman-57,
  Author	= {Bellman, R.E.},
  date-added	= {2011-08-24 11:52:57 +0200},
  date-modified	= {2011-08-24 11:53:28 +0200},
  Publisher	= {Princeton University Press},
  Title		= {Dynamic programming},
  Year		= {1957}
}

###Book{	  bellman-57,
  Author	= {Bellman, R.E.},
  date-added	= {2011-08-24 11:52:57 +0200},
  date-modified	= {2011-08-24 11:53:28 +0200},
  Publisher	= {Princeton University Press},
  Title		= {Dynamic programming},
  Year		= {1957}
}

@Article{	  beltrami1994circ,
  Title		= {Structural basis of end-stage failure in ischemic
		  cardiomyopathy in humans.},
  Author	= {Beltrami, C A and Finato, N and Rocco, M and Feruglio, G A
		  and Puricelli, C and Cigola, E and Quaini, F and
		  Sonnenblick, E H and Olivetti, G and Anversa, P},
  Journal	= {Circulation},
  Year		= {1994},
  Number	= {1},
  Pages		= {151-63},
  Volume	= {89},
  Abstract	= {BACKGROUND Ischemic cardiomyopathy is characterized by
		  myocyte loss, reactive cellular hypertrophy, and
		  ventricular scarring. However, the relative contribution of
		  these tissue and cellular processes to late failure remains
		  to be determined.METHODS AND RESULTS Ten hearts were
		  obtained from individuals undergoing cardiac
		  transplantation as a result of chronic coronary artery
		  disease in its terminal stage. An identical number of
		  control hearts were collected at autopsy from patients who
		  died from causes other than cardiovascular disease, and
		  morphometric methodologies were applied to the analysis of
		  the left and right ventricular myocardium. Left ventricular
		  hypertrophy evaluated as a change in organ weight,
		  aggregate myocyte mass, and myocyte cell volume per nucleus
		  showed increases of 85%, 47%, and 103%, respectively.
		  Corresponding increases in the right ventricle were 75%,
		  74%, and 112%. Myocyte loss, which accounted for 28% and
		  30% in the left and right ventricles, was responsible for
		  the difference in the assessment of myocyte hypertrophy at
		  the ventricular, tissue, and cellular levels. Left
		  ventricular muscle cell hypertrophy was accomplished
		  through a 16% and 51% increase in myocyte diameter and
		  length, whereas right ventricular myocyte hypertrophy was
		  the consequence of a 13% and 67% increase in these linear
		  dimensions, respectively. Moreover, a 36% reduction in the
		  number of myocytes included in the thickness of the left
		  ventricular wall was found. Collagen accumulation in the
		  form of segmental, replacement, and interstitial fibrosis
		  comprised an average 28% and 13% of the left and right
		  ventricular myocardia, respectively. The combination of
		  cell loss and myocardial fibrosis, myocyte lengthening, and
		  mural slippage of cells resulted in 4.6-fold expansion of
		  left ventricular cavitary volume and a 56% reduction in the
		  ventricular mass-to-chamber volume ratio.CONCLUSIONS These
		  results are consistent with the contention that both
		  myocyte and collagen compartments participate in the
		  development of decompensated eccentric ventricular
		  hypertrophy in the cardiomyopathic heart of ischemic
		  origin.},
  DOI		= {10.1161/01.CIR.89.1.151},
  EPrint	= {http://circ.ahajournals.org/content/89/1/151.full.pdf+html},
  File		= {beltrami94.pdf:beltrami94.pdf:PDF},
  timestamp	= {2015/09/17},
  URL		= {http://circ.ahajournals.org/content/89/1/151.abstract}
}

@PhdThesis{	  ben-salah-99,
  Annote	= {mhd, finite element},
  Author	= {Ben Salah, N.},
  code		= {mhd37},
  School	= {Concordia University},
  Title		= {A finite element method for the fully-coupled
		  magnetohydrodynamics},
  Year		= {1999}
}

###PhdThesis{	  ben-salah-99,
  Annote	= {mhd, finite element},
  Author	= {Ben Salah, N.},
  code		= {mhd37},
  School	= {Concordia University},
  Title		= {A finite element method for the fully-coupled
		  magnetohydrodynamics},
  Year		= {1999}
}

@TechReport{	  ben-salah-soulaimani-habashi-99,
  Annote	= {mhd, finite element, stabilization},
  Author	= {Ben Salah, N. and Soulaimani, A. and Habashi, W. G.},
  code		= {mhd20},
  Institution	= {AIAA 99-3322},
  Title		= {A fully coupled finite element method for the 3{D} {MHD}
		  equations with a {GMRES}-based algorithm},
  Year		= {1999}
}

###TechReport{	  ben-salah-soulaimani-habashi-99,
  Annote	= {mhd, finite element, stabilization},
  Author	= {Ben Salah, N. and Soulaimani, A. and Habashi, W. G.},
  code		= {mhd20},
  Institution	= {AIAA 99-3322},
  Title		= {A fully coupled finite element method for the 3{D} {MHD}
		  equations with a {GMRES}-based algorithm},
  Year		= {1999}
}

@Article{	  ben-salah-soulaimani-habashi-fortin-99,
  Annote	= {mhd, finite element, stabilization},
  Author	= {Ben Salah, N. and Soulaimani, A. and Habashi, W. G. and
		  Fortin, M.},
  code		= {mhd21},
  Journal	= {Int. Jour. Num. Meth. Fluids},
  Pages		= {535-554},
  Title		= {A conservative stabilized finite element method for the
		  magneto-hydrodynamic equations},
  Volume	= {29},
  Year		= {1999}
}

###Article{	  ben-salah-soulaimani-habashi-fortin-99,
  Annote	= {mhd, finite element, stabilization},
  Author	= {Ben Salah, N. and Soulaimani, A. and Habashi, W. G. and
		  Fortin, M.},
  code		= {mhd21},
  Journal	= {Int. Jour. Num. Meth. Fluids},
  Pages		= {535-554},
  Title		= {A conservative stabilized finite element method for the
		  magneto-hydrodynamic equations},
  Volume	= {29},
  Year		= {1999}
}

@Article{	  benney-73,
  Author	= {Benney, D. J.},
  Journal	= {Stud. Appl. Math.},
  Pages		= {45--50},
  Title		= {Some properties of long waves},
  Volume	= {52},
  Year		= {1973}
}

###Article{	  benney-73,
  Author	= {Benney, D. J.},
  Journal	= {Stud. Appl. Math.},
  Pages		= {45--50},
  Title		= {Some properties of long waves},
  Volume	= {52},
  Year		= {1973}
}

@Book{		  bensoussan-71,
  Author	= {Bensoussan, A.},
  date-added	= {2009-03-10 12:00:24 -0700},
  date-modified	= {2009-03-10 12:00:34 -0700},
  Publisher	= {Dunod},
  rating	= {5},
  read		= {Yes},
  Title		= {Filtrage optimal des syst{\`e}mes lin{\'e}aires},
  Year		= {1971}
}

###Book{	  bensoussan-71,
  Author	= {Bensoussan, A.},
  date-added	= {2009-03-10 12:00:24 -0700},
  date-modified	= {2009-03-10 12:00:34 -0700},
  Publisher	= {Dunod},
  rating	= {5},
  read		= {Yes},
  Title		= {Filtrage optimal des syst{\`e}mes lin{\'e}aires},
  Year		= {1971}
}

@Book{		  bensoussan-lions-papanicolaou-78,
  Address	= {Amsterdam},
  Author	= {Bensoussan, A. and Lions, J.-L. and Papanicolaou, G.},
  Pages		= {xxiv+700},
  Publisher	= {North-Holland Publishing Co.},
  Series	= {Studies in Mathematics and its Applications},
  Title		= {Asymptotic analysis for periodic structures},
  Volume	= {5},
  Year		= {1978}
}

###Book{	  bensoussan-lions-papanicolaou-78,
  Address	= {Amsterdam},
  Author	= {Bensoussan, A. and Lions, J.-L. and Papanicolaou, G.},
  Pages		= {xxiv+700},
  Publisher	= {North-Holland Publishing Co.},
  Series	= {Studies in Mathematics and its Applications},
  Title		= {Asymptotic analysis for periodic structures},
  Volume	= {5},
  Year		= {1978}
}

@Article{	  benzi_numerical_2005,
  Title		= {Numerical Solution of Saddle Point Problems},
  Author	= {Benzi, Michele and Golub, Gene H. and Liesen, J{\"o}rg},
  Year		= {2005},
  Month		= may,
  Volume	= {14},
  Pages		= {1--137},
  ISSN		= {0962-4929, 1474-0508},
  DOI		= {10.1017/S0962492904000212},
  Journal	= {Acta Numerica},
  Language	= {en}
}

@Article{	  berberoglu2014ejms,
  Title		= {Computational modeling of coupled cardiac electromechanics
		  incorporating cardiac dysfunctions },
  Author	= {Ezgi Berbero?lu and H. Onur Solmaz and Serdar GÃ¶ktepe},
  Journal	= {European Journal of Mechanics - A/Solids },
  Year		= {2014},
  Note		= {Frontiers in Finite-Deformation Electromechanics },
  Pages		= {60 - 73},
  Volume	= {48},
  Abstract	= {Abstract Computational models have huge potential to
		  improve our understanding of the coupled biological,
		  electrical, and mechanical underpinning mechanisms of
		  cardiac function and diseases. This contribution is
		  concerned with the computational modeling of different
		  cardiac dysfunctions related to the excitation?contraction
		  coupling in the heart. To this end, the coupled problem of
		  cardiac electromechanics is formulated through the
		  conservation of linear momentum equation and the excitation
		  equation formulated in the Eulerian setting and solved
		  monolithically through an entirely finite element-based
		  implicit algorithm. To model the electromechanical
		  coupling, we use the recently proposed, novel generalized
		  Hill model that is based on the multiplicative
		  decomposition of the deformation gradient into the active
		  and passive parts and on the additive split of the free
		  energy function. This framework enables us to combine the
		  advantageous features of the active-stress and the active-
		  strain models suggested in literature. The proposed coupled
		  approach is further supplemented by the Windkesel-based
		  model to account for the pressure evolution within the
		  ventricular chambers during the cardiac cycle. This allows
		  us to generate the pressure?volume curves as a diagnostic
		  tool to detect possible cardiac dysfunctions and to assess
		  the efficiency of the heart function. The proposed model is
		  employed to investigate different pathological cases that
		  include infarction, eccentric hypertrophy, and concentric
		  hypertrophy. The effects of these distinct cardiac
		  dysfunctions on the pressure?volume curves and on the
		  overall excitation?contraction of the heart are
		  computationally examined and compared to the clinical
		  observations reported in literature. },
  DOI		= {http://dx.doi.org/10.1016/j.euromechsol.2014.02.021},
  File		= {berberoglu14.pdf:berberoglu14.pdf:PDF},
  ISSN		= {0997-7538},
  Keywords	= {Coupled cardiac electromechanics},
  timestamp	= {2015/09/22},
  URL		= {http://www.sciencedirect.com/science/article/pii/S0997753814000540}
}

@Article{	  berger-jameson-85,
  Author	= {Berger, M.J. and Jameson, A.},
  Journal	= {AIAA J.},
  Number	= {4},
  Pages		= {561--568},
  Title		= {{Automatic adaptive grid refinement for Euler equations}},
  Volume	= {23},
  Year		= {1985}
}

###Article{	  berger-jameson-85,
  Author	= {Berger, M.J. and Jameson, A.},
  Journal	= {AIAA J.},
  Number	= {4},
  Pages		= {561--568},
  Title		= {{Automatic adaptive grid refinement for Euler equations}},
  Volume	= {23},
  Year		= {1985}
}

@Book{		  bergh-lofstrom-76,
  Author	= {Bergh, J. and L{\"o}fstr{\"o}m, J.},
  Publisher	= {Springer-Verlag},
  Title		= {Interpolation spaces, an introduction},
  Year		= {1976}
}

###Book{	  bergh-lofstrom-76,
  Author	= {Bergh, J. and L{\"o}fstr{\"o}m, J.},
  Publisher	= {Springer-Verlag},
  Title		= {Interpolation spaces, an introduction},
  Year		= {1976}
}

@Article{	  bermudez-salgado,
  Author	= {Berm{\'u}dez, A. and Salgado, P.},
  code		= {mhd46},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Number	= {1-3},
  Pages		= {391--412},
  Title		= {A domain decomposition/finite element method for the
		  numerical simulation of electrolytic cells},
  Volume	= {188},
  Year		= {2000}
}

###Article{	  bermudez-salgado,
  Author	= {Berm{\'u}dez, A. and Salgado, P.},
  code		= {mhd46},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Number	= {1-3},
  Pages		= {391--412},
  Title		= {A domain decomposition/finite element method for the
		  numerical simulation of electrolytic cells},
  Volume	= {188},
  Year		= {2000}
}

@InCollection{	  bernardi-maday-patera-93,
  Address	= {Dordrecht},
  Author	= {Bernardi, C. and Maday, Y. and Patera, A. T.},
  BookTitle	= {Asymptotic and numerical methods for partial differential
		  equations with critical parameters (Beaune, 1992)},
  Pages		= {269--286},
  Publisher	= {Kluwer Acad. Publ.},
  Series	= {NATO Adv. Sci. Inst. Ser. C Math. Phys. Sci.},
  Title		= {Domain decomposition by the mortar element method},
  Volume	= {384},
  Year		= {1993}
}

###InCollection{  bernardi-maday-patera-93,
  Address	= {Dordrecht},
  Author	= {Bernardi, C. and Maday, Y. and Patera, A. T.},
  BookTitle	= {Asymptotic and numerical methods for partial differential
		  equations with critical parameters (Beaune, 1992)},
  Pages		= {269--286},
  Publisher	= {Kluwer Acad. Publ.},
  Series	= {NATO Adv. Sci. Inst. Ser. C Math. Phys. Sci.},
  Title		= {Domain decomposition by the mortar element method},
  Volume	= {384},
  Year		= {1993}
}

@InCollection{	  bernardi-maday-patera-94,
  Author	= {Bernardi, C. and Maday, Y. and Patera, A. T.},
  BookTitle	= {Nonlinear partial differential equations and their
		  applications. Coll{\`e}ge de France Seminar, Vol.\ XI
		  (Paris, 1989--1991)},
  Pages		= {13--51},
  Publisher	= {Longman Sci. Tech.},
  Series	= {Pitman Res. Notes Math. Ser.},
  Title		= {A new nonconforming approach to domain decomposition: the
		  mortar element method},
  Volume	= {299},
  Year		= {1994}
}

###InCollection{  bernardi-maday-patera-94,
  Author	= {Bernardi, C. and Maday, Y. and Patera, A. T.},
  BookTitle	= {Nonlinear partial differential equations and their
		  applications. Coll{\`e}ge de France Seminar, Vol.\ XI
		  (Paris, 1989--1991)},
  Pages		= {13--51},
  Publisher	= {Longman Sci. Tech.},
  Series	= {Pitman Res. Notes Math. Ser.},
  Title		= {A new nonconforming approach to domain decomposition: the
		  mortar element method},
  Volume	= {299},
  Year		= {1994}
}

@Article{	  bernardi-metivet-pernaud-thomas-95,
  Author	= {Bernardi, C. and M{\'e}tivet, B. and Pernaud-Thomas, B.},
  Journal	= {Mod{\'e}lisation math{\'e}\-matique et Analyse
		  num{\'e}\-rique},
  Number	= {7},
  Pages		= {871-921},
  Title		= {Couplage des {\'e}quations de {Navier-Stokes} et de la
		  chaleur~: le mod{\`e}le et son approximation par
		  {\'e}l{\'e}ments finis},
  Volume	= {29},
  Year		= {1995}
}

###Article{	  bernardi-metivet-pernaud-thomas-95,
  Author	= {Bernardi, C. and M{\'e}tivet, B. and Pernaud-Thomas, B.},
  Journal	= {Mod{\'e}lisation math{\'e}\-matique et Analyse
		  num{\'e}\-rique},
  Number	= {7},
  Pages		= {871-921},
  Title		= {Couplage des {\'e}quations de {Navier-Stokes} et de la
		  chaleur~: le mod{\`e}le et son approximation par
		  {\'e}l{\'e}ments finis},
  Volume	= {29},
  Year		= {1995}
}

@Article{	  bernardi-pironneau-91,
  Author	= {Bernardi, C. and Pironneau, O.},
  Journal	= {Comm. Partial Differential Equations},
  Number	= {1},
  Pages		= {59--104},
  Title		= {On the shallow water equations at low {R}eynolds number},
  Volume	= {16},
  Year		= {1991}
}

###Article{	  bernardi-pironneau-91,
  Author	= {Bernardi, C. and Pironneau, O.},
  Journal	= {Comm. Partial Differential Equations},
  Number	= {1},
  Pages		= {59--104},
  Title		= {On the shallow water equations at low {R}eynolds number},
  Volume	= {16},
  Year		= {1991}
}

@Book{		  bernstein2004mripulseseq,
  Title		= {Handbook of {MRI} Pulse Sequences},
  Author	= {Bernstein, Matt A. and King, Kevin F. and Zhou, Xiaohong
		  Joe},
  Publisher	= {Elsevier},
  Year		= {2004},
  Abstract	= {Magnetic Resonance Imaging (MRI) is among the most
		  important medical imaging techniques available today. There
		  is an installed base of approximately 15,000 MRI scanners
		  worldwide. Each of these scanners is capable of running
		  many different "pulse sequences", which are governed by
		  physics and engineering principles, and implemented by
		  software programs that control the MRI hardware. To utilize
		  an MRI scanner to the fullest extent, a conceptual
		  understanding of its pulse sequences is crucial. This book
		  offers a complete guide that can help the scientists,
		  engineers, clinicians, and technologists in the field of
		  MRI understand and better employ their
		  scanner.\ensuremath{\cdot}Explains pulse sequences, their
		  components, and the associated image reconstruction methods
		  commonly used in MRI\ensuremath{\cdot}Provides
		  self-contained sections for individual
		  techniques\ensuremath{\cdot}Can be used as a quick
		  reference guide or as a resource for deeper
		  study\ensuremath{\cdot}Includes both non-mathematical and
		  mathematical descriptions \ensuremath{\cdot}Contains
		  numerous figures, tables, references, and worked example problems},
  ISBN		= {9780080533124},
  Language	= {en},
  owner		= {david},
  timestamp	= {2015-05-27 21:31:22}
}

@Article{	  bersi2016novel,
  Title		= {Novel methodology for characterizing regional variations
		  in the material properties of murine aortas},
  Author	= {Bersi, Matthew R and Bellini, Chiara and Di Achille, Paolo
		  and Humphrey, Jay D and Genovese, Katia and Avril,
		  St{\'e}phane},
  Journal	= {Journal of biomechanical engineering},
  Volume	= {138},
  Number	= {7},
  Pages		= {071005},
  Year		= {2016},
  Publisher	= {American Society of Mechanical Engineers}
}

@Article{	  bersi2018local,
  Title		= {Local variations in material and structural properties
		  characterize murine thoracic aortic aneurysm mechanics},
  Author	= {Bersi, Matthew R and Bellini, Chiara and Humphrey, Jay D
		  and Avril, St{\'e}phane},
  Journal	= {Biomechanics and modeling in mechanobiology},
  Pages		= {1--16},
  Year		= {2018},
  Publisher	= {Springer}
}

@InCollection{	  bertagna_data_2014,
  langid	= {english},
  Location	= {{Basel}},
  Title		= {Data {{Assimilation}} in {{Cardiovascular
		  Fluid}}--{{Structure Interaction Problems}}: {{An
		  Introduction}}},
  ISBN		= {978-3-0348-0822-4},
  URL		= {https://doi.org/10.1007/978-3-0348-0822-4_6},
  ShortTitle	= {Data {{Assimilation}} in {{Cardiovascular
		  Fluid}}--{{Structure Interaction Problems}}},
  Abstract	= {Numerical methods for incompressible fluid dynamics have
		  recently received a strong impulse from the applications to
		  the cardiovascular system. In particular, fluid--structure
		  interaction methods have been extensively investigated in
		  view of an accurate and possibly fast simulation of blood
		  flow in arteries and veins. This has been strongly
		  motivated by the progressive interest in using numerical
		  tools not only for understanding the general physiology and
		  pathology of the vascular system. The opportunity offered
		  by medical images properly preprocessed and elaborated to
		  simulate blood flow in real patients highlighted the
		  potential impact of scientific computing on the clinical
		  practice. Therefore, in silico experiments are currently
		  extensively used in bioengineering for completing (and
		  sometimes driving) more traditional in vivo and in vitro
		  investigations. Parallel to the development of numerical
		  models, the need for quantitative analysis for diagnostic
		  purposes has strongly stimulated the design of new methods
		  and instruments for measurements and imaging. Thanks to
		  these developments, a huge amount of data is nowadays
		  available. Data Assimilation is the accurate merging of
		  measures (including images) and numerical simulations for a
		  mathematically sound integration of different sources of
		  information. The outcome of this process includes both the
		  patient-specific measures and the general principles
		  underlying the development of mathematical models. In this
		  way, simulations are adapted to the availability of
		  individual data and are therefore supposed to be more
		  reliable; measures are correspondingly filtered by the
		  mathematical models assumed to describe the underlying
		  phenomena, resulting in a (hopefully) significant reduction
		  of the noise.This chapter provides an introduction to
		  methods for data assimilation, mostly developed in fields
		  like meteorology, applied to computational hemodynamics. We
		  focus mainly on two of them: methods based on stochastic
		  arguments (Kalman filtering) and variational methods. We
		  also address some examples that have been approached with
		  different techniques, in particular the estimation of
		  vascular compliance from displacement measures.},
  BookTitle	= {Fluid-{{Structure Interaction}} and {{Biomedical
		  Applications}}},
  Series	= {Advances in {{Mathematical Fluid Mechanics}}},
  Publisher	= {{Springer Basel}},
  URLDate	= {2019-02-20},
  Year		= {2014},
  Pages		= {395-481},
  Author	= {Bertagna, Luca and D'Elia, Marta and Perego, Mauro and
		  Veneziani, Alessandro},
  Editor = {Bodnár, Tomáš and Galdi, Giovanni P. and Nečasová, Šárka},
  DOI		= {10.1007/978-3-0348-0822-4_6}
}

@Article{	  bertoglio-etal-observers-12,
  Author	= {Bertoglio, C. and Chapelle, D. and Fern\'andez, M. and
		  Gerbeau, JF. and Moireau, P.},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Title		= {State observers of a vascular fluidâstructure
		  interaction model through measurements in the solid},
  Year		= {2013},
  Volume	= {256},
  Pages		= {149--168}
}

@Article{	  bertoglio-etal-observersfsi-12,
  Author	= {Bertoglio, C. and Chapelle, D. and Fern\'andez, M.A. and
		  Gerbeau, J-F. and Moireau, P.},
  date-modified	= {2012-05-01 12:52:26 +0000},
  Journal	= cmame,
  Title		= {{State observers of a vascular fluid-structure interaction
		  model through measurements in the solid}},
  Year		= {2012},
  Note		= {To appear}
}

###Article{	  bertoglio-etal-observersfsi-12,
  Author	= {Bertoglio, C. and Chapelle, D. and Fern\'andez, M.A. and
		  Gerbeau, J-F. and Moireau, P.},
  date-modified	= {2012-05-01 12:52:26 +0000},
  Journal	= cmame,
  Title		= {{State observers of a vascular fluid-structure interaction
		  model through measurements in the solid}},
  Year		= {2012},
  Note		= {To appear}
}

@InProceedings{	  bertoglio-fernandez-gerbeau-moireau-09,
  Author	= {Bertoglio, C. and Fern\'andez, M.A. and Gerbeau, J-F. and
		  Moireau, Ph. },
  Title		= {Filtering-based data assimilation in fluid-structure
		  interaction: towards personalization of vascular models },
  BookTitle	= {1st International Conference on Mathematical and
		  Computational Biomedical Engineering - CMBE},
  Year		= 2009,
  Editor	= {P.Nithiarasu and R.L\"ohner}
}

###InProceedings{ bertoglio-fernandez-gerbeau-moireau-09,
  Author	= {Bertoglio, C. and Fern\'andez, M.A. and Gerbeau, J-F. and
		  Moireau, Ph. },
  Title		= {Filtering-based data assimilation in fluid-structure
		  interaction: towards personalization of vascular models },
  BookTitle	= {1st International Conference on Mathematical and
		  Computational Biomedical Engineering - CMBE},
  Year		= 2009,
  Editor	= {P.Nithiarasu and R.L\"ohner}
}

@Article{	  bertoglio-moireau-gerbeau-11,
  Author	= "Bertoglio, C. and Moireau, P. and Gerbeau, J.-F.",
  Title		= "{Sequential parameter estimation for fluid-structure
		  problems. Application to hemodynamics}",
  Journal	= "Int. J. Num. Meth. Biomed. Engn",
  Volume	= 0,
  Pages		= "00-00",
  Year		= "2011"
}

###Article{	  bertoglio-moireau-gerbeau-11,
  Author	= "Bertoglio, C. and Moireau, P. and Gerbeau, J.-F.",
  Title		= "{Sequential parameter estimation for fluid-structure
		  problems. Application to hemodynamics}",
  Journal	= "Int. J. Num. Meth. Biomed. Engn",
  Volume	= 0,
  Pages		= "00-00",
  Year		= "2011"
}

@Article{	  bertoglio2012ijnmbe,
  Title		= {Sequential parameter estimation in fluid-structure
		  problems. Application to hemodynamics},
  Author	= {Bertoglio, C. and Moireau, P. and Gerbeau, JF.},
  Journal	= {International Journal for Numerical Methods in Biomedical
		  Engineering},
  Year		= {2012},
  Pages		= {434--455},
  Volume	= {28},
  bdsk-url-1	= {http://dx.doi.org/0.1002/cnm.1476},
  date-modified	= {2012-05-01 13:06:30 +0000},
  DOI		= {0.1002/cnm.1476},
  Issue		= {4},
  Keywords	= {FSI, inverse problems, Kalman Filter}
}

@Article{	  bertoglio2013cmame,
  Title		= {State observers of a vascular fluid-structure interaction
		  model through measurements in the solid},
  Author	= {Bertoglio, C. and Chapelle, D. and Fern\'andez, M.A. and
		  Gerbeau, J-F. and Moireau, P.},
  Journal	= {Computational Methods in Applied Mechanics and
		  Engineering},
  Year		= {2013},
  Note		= {To appear},
  date-modified	= {2012-05-01 12:52:26 +0000},
  Keywords	= {FSI, luenberger observer}
}

@Article{	  bertoglio2013sisc,
  Title		= {Fractional-step schemes for the coupling of distributed
		  and lumped models in hemodynamics},
  Author	= {Bertoglio, C. and Caiazzo, A. and Fern\'andez, M.A.},
  Journal	= {SIAM Journal of Scientific Computing},
  Year		= {2013},
  Number	= {3},
  Pages		= {B551-B575},
  Volume	= {35},
  date-modified	= {2012-05-01 13:06:38 +0000},
  DOI		= {10.1137/120874412},
  Keywords	= {windkessel, projection method, Navier-Stokes}
}

@Article{	  bertoglio2014jbmech,
  Title		= {Identification of artery wall stiffness: in vitro
		  validation and in vivo results of a data assimilation
		  procedure applied to a 3D fluid-structure interaction
		  model},
  Author	= {Bertoglio, C. and Barber, D. and Gaddum, N. and Valverde,
		  I. and Rutten, M. and Beerbaum, P. and Moireau, P. and
		  Hose, R. and Gerbeau, JF.},
  Journal	= {Journal of Biomechanics},
  Year		= {2014},
  Number	= {5},
  Pages		= {1027--1034},
  Volume	= {47},
  date-modified	= {2012-05-01 13:07:00 +0000},
  DOI		= {10.1016/j.jbiomech.2013.12.029},
  ISSN		= {0021-9290},
  Keywords	= {FSI, inverse problems},
  URL		= {http://dx.doi.org/10.1016/j.jbiomech.2013.12.029}
}

@Article{	  bertoglio2014tangential,
  Title		= {A tangential regularization method for backflow
		  stabilization in hemodynamics},
  Author	= {Bertoglio, Crist{\'o}bal and Caiazzo, Alfonso},
  Journal	= {Journal of Computational Physics},
  Volume	= {261},
  Pages		= {162--171},
  Year		= {2014},
  Publisher	= {Academic Press}
}

@Article{	  bertoglio2016stab,
  Title		= {A Stokes-residual backflow stabilization method applied to
		  physiological flows},
  Author	= {Bertoglio, Crist{\'o}bal and Caiazzo, Alfonso},
  Journal	= {Journal of Computational Physics},
  Volume	= {313},
  Pages		= {260--278},
  Year		= {2016},
  Publisher	= {Elsevier}
}

@Article{	  bertoglio2016stokes,
  Title		= {A {S}tokes-residual backflow stabilization method applied
		  to physiological flows},
  Author	= {Bertoglio, Crist{\'o}bal and Caiazzo, Alfonso},
  Journal	= {Journal of Computational Physics},
  Volume	= {313},
  Pages		= {260--278},
  Year		= {2016},
  Publisher	= {Elsevier}
}

###Article{	  bertoglio2016stokes,
  Title		= {A {S}tokes-residual backflow stabilization method applied
		  to physiological flows},
  Author	= {Bertoglio, Crist{\'o}bal and Caiazzo, Alfonso},
  Journal	= {Journal of Computational Physics},
  Volume	= {313},
  Pages		= {260--278},
  Year		= {2016},
  Publisher	= {Elsevier}
}

@Article{	  bertoglio_benchmark_2017,
  Title		= {Benchmark Problems for Numerical Treatment of Backflow at
		  Open Boundaries},
  Volume	= {34},
  ISSN		= {2040-7939},
  URL		= {https://onlinelibrary.wiley.com/doi/full/10.1002/cnm.2918},
  DOI		= {10.1002/cnm.2918},
  Abstract	= {Abstract In computational fluid dynamics, incoming
		  velocity at open boundaries, or backflow, often yields
		  unphysical instabilities already for moderate Reynolds
		  numbers. Several treatments to overcome these backflow
		  instabilities have been proposed in the literature.
		  However, these approaches have not yet been compared in
		  detail in terms of accuracy in different physiological
		  regimes, in particular because of the difficulty to
		  generate stable reference solutions apart from analytical
		  forms. In this work, we present a set of benchmark problems
		  in order to compare different methods in different backflow
		  regimes (with a full reversal flow and with propagating
		  vortices after a stenosis). The examples are implemented in
		  FreeFem++, and the source code is openly available, making
		  them a solid basis for future method developments.},
  Number	= {2},
  JournalTitle	= {International Journal for Numerical Methods in Biomedical
		  Engineering},
  ShortJournal	= {International Journal for Numerical Methods in Biomedical
		  Engineering},
  URLDate	= {2018-12-12},
  Date		= {2017-07-25},
  Pages		= {e2918},
  Author	= {Bertoglio, CristÃ³bal and Caiazzo, Alfonso and Bazilevs,
		  Yuri and Braack, Malte and Esmaily, Mahdi and Gravemeier,
		  Volker and L. Marsden, Alison and Pironneau, Olivier and E.
		  Vignon-Clementel, Irene and A. Wall, Wolfgang}
}

@article{funamoto2013pressure,
  title={Reproduction of pressure field in ultrasonic-measurement-integrated simulation of blood flow},
  author={Funamoto, Kenichi and Hayase, Toshiyuki},
  journal={International journal for numerical methods in biomedical engineering},
  volume={29},
  number={7},
  pages={726--740},
  year={2013},
  publisher={Wiley Online Library}
}

@article{adib2017minimizing,
  title={Minimizing the blood velocity differences between phase-contrast magnetic resonance imaging and computational fluid dynamics simulation in cerebral arteries and aneurysms},
  author={Adib, Mohd Azrul Hisham Mohd and Ii, Satoshi and Watanabe, Yoshiyuki and Wada, Shigeo},
  journal={Medical \& biological engineering \& computing},
  volume={55},
  number={9},
  pages={1605--1619},
  year={2017},
  publisher={Springer}
}

@PhdThesis{	  bertoglio_forward_2012,
  Title		= {Forward and {{Inverse Problems}} in {{Fluid}}-{{Structure
		  Interaction}}. {{Application}} to {{Hemodynamics}}},
  URL		= {https://tel.archives-ouvertes.fr/tel-00768188/document},
  Abstract	= {In this thesis we deal with the simulation of
		  fluid-structure interac- tion (FSI) problems in
		  hemodynamics, with the emphasis in data assimilation and
		  simulation in physiological regimes. The first part
		  presents and analyzes a semi-implicit coupling scheme
		  between the three-dimensional Navier-Stokes equations (NSE)
		  and lumped parameter models, when the NSE are solved in a
		  projection framework. This allows to simulate fluid and FSI
		  problems more robustly, i.e., avoiding instabilities that
		  may occur when dealing with realistic test-cases. The
		  second part of the work is devoted to the study of
		  sequential data assimila- tion techniques in FSI. We first
		  present a study about the application of a reduced- order
		  Unscented Kalman Filter for the effective estimation of
		  relevant physical pa- rameters, like the stiffness
		  distribution of the vessel wall and the proximal resistance
		  in the fluid, from displacement measurements at the
		  fluid-structure interface. Next, we analyze some Luenberger
		  observers from solid mechanics in FSI, with the aim to
		  construct tractable state estimators for large-scale FSI
		  problems. In the third and final part, we apply some of the
		  aforementioned methodologies to real physical problems.
		  First, we perform the estimation of the wall stiffness (for
		  linear and non-linear solid models) from data coming from
		  MR-images of a silicone rubber aortic phantom. To finish,
		  we deal with the forward analysis of a real aorta with
		  repaired coarctation and we test the estimation techniques
		  with synthetic data and show some results with the
		  patient's data.},
  Institution	= {{Université Pierre et Marie Curie - Paris VI}},
  URLDate	= {2016-04-01},
  Date		= {2012-11-23},
  Author	= {Bertoglio, Cristobal}
}

@Article{	  bertoglio_fractional-step_2013,
  Title		= {Fractional-Step Schemes for the Coupling of Distributed
		  and Lumped Models in Hemodynamics},
  Volume	= {35},
  Number	= {3},
  JournalTitle	= {SIAM Journal on Scientific Computing},
  Date		= {2013},
  Pages		= {B551-B575},
  Author	= {Bertoglio, CristÃ³bal and Caiazzo, Alfonso and FernÃ¡ndez,
		  Miguel A},
  Publisher	= {{SIAM}}
}

@Article{	  bertoglio_identification_2014,
  Title		= {Identification of Artery Wall Stiffness: {{In}} Vitro
		  Validation and in Vivo Results of a Data Assimilation
		  Procedure Applied to a {{3D}} Fluid-Structure Interaction
		  Model},
  Volume	= {47},
  URL		= {http://www.sciencedirect.com/science/article/pii/S0021929014000098},
  ShortTitle	= {Identification of Artery Wall Stiffness},
  Number	= {5},
  JournalTitle	= {Journal of biomechanics},
  URLDate	= {2016-11-21},
  Year		= {2014},
  Pages		= {1027--1034},
  Author	= {Bertoglio, Cristobal and Barber, David and Gaddum,
		  Nicholas and Valverde, Israel and Rutten, Marcel and
		  Beerbaum, Philipp and Moireau, Philippe and Hose, Rodney
		  and Gerbeau, Jean-Frederic}
}

@Article{	  bertoglio_relative_2018,
  Title		= {Relative Pressure Estimation from Velocity Measurements in
		  Blood Flows: {{State}}-of-the-Art and New Approaches},
  ShortTitle	= {Relative Pressure Estimation from Velocity Measurements in
		  Blood Flows},
  Author	= {Bertoglio, Crist{\'o}bal and Nu{\~n}ez, Rodolfo and
		  Galarce, Felipe and Nordsletten, David and Osses, Axel},
  Year		= {2018},
  Month		= feb,
  Volume	= {34},
  Pages		= {e2925},
  ISSN		= {20407939},
  DOI		= {10.1002/cnm.2925},
  Journal	= {IJNMBE},
  Language	= {en},
  Number	= {2}
}

###Article{	  bertoglio_relative_2018,
  langid	= {english},
  Title		= {Relative Pressure Estimation from Velocity Measurements in
		  Blood Flows: {{State}}-of-the-Art and New Approaches:
		  {{Relative}} Pressure Estimation},
  Volume	= {34},
  ISSN		= {20407939},
  URL		= {http://doi.wiley.com/10.1002/cnm.2925},
  DOI		= {10.1002/cnm.2925},
  ShortTitle	= {Relative Pressure Estimation from Velocity Measurements in
		  Blood Flows},
  Number	= {2},
  JournalTitle	= {International Journal for Numerical Methods in Biomedical
		  Engineering},
  URLDate	= {2018-12-10},
  Date		= {2018-02},
  Pages		= {e2925},
  Author	= {Bertoglio, CristÃ³bal and NuÃ±ez, Rodolfo and Galarce,
		  Felipe and Nordsletten, David and Osses, Axel}
}

###Article{	  bertoglio_relative_2018,
  Title		= {Relative pressure estimation from velocity measurements in
		  blood flows: State-of-the-art and new approaches},
  Author	= {Bertoglio, Crist{\'o}bal and N{\'u}nez, Rodolfo and
		  Galarce, Felipe and Nordsletten, David and Osses, Axel},
  Journal	= {International journal for numerical methods in biomedical
		  engineering},
  Volume	= {34},
  Number	= {2},
  Pages		= {e2925},
  Year		= {2018},
  Publisher	= {Wiley Online Library}
}

@Article{	  bertoglio_sequential_2012,
  Title		= {Sequential Parameter Estimation for Fluid-Structure
		  Problems: {{Application}} to Hemodynamics},
  Volume	= {28},
  ShortTitle	= {Sequential Parameter Estimation for FluidâStructure
		  Problems},
  Number	= {4},
  JournalTitle	= {International Journal for Numerical Methods in Biomedical
		  Engineering},
  Year		= {2012},
  Pages		= {434--455},
  Author	= {Bertoglio, Crist\'obal and Moireau, Philippe and Gerbeau,
		  Jean-Frederic}
}

@Article{	  bertoglio_state_2013,
  Title		= {State Observers of a Vascular Fluid-Structure Interaction
		  Model through Measurements in the Solid},
  Volume	= {256},
  JournalTitle	= {Computer Methods in Applied Mechanics and Engineering},
  Year		= {2013},
  Pages		= {149--168},
  Author	= {Bertoglio, Cristobal and Chapelle, Dominique and
		  FernÃ¡ndez, Miguel Angel and Gerbeau, J.-F. and Moireau,
		  Philippe}
}

@Article{	  bertoglio_stokes-residual_2016,
  Title		= {A {{Stokes}}-Residual Backflow Stabilization Method
		  Applied to Physiological Flows},
  Volume	= {313},
  ISSN		= {0021-9991},
  URL		= {http://www.sciencedirect.com/science/article/pii/S0021999116001157},
  DOI		= {10.1016/j.jcp.2016.02.045},
  Abstract	= {In computational fluid dynamics, the presence of incoming
		  flow at open boundaries (backflow) might often yield
		  unphysical oscillations and instabilities issues, even for
		  moderate Reynolds numbers. It is widely accepted that this
		  problem is caused by the incoming convective energy at the
		  open boundary, which cannot be controlled a priori when the
		  velocity at the boundary is unknown. In this work, we
		  propose a stabilized finite element formulation for the
		  incompressible NavierâStokes equations, in which the
		  stabilization term is based on the residual of a weak
		  Stokes problem normal to the open boundary, driven by an
		  approximated boundary pressure gradient. In particular, the
		  viscous term introduces additional dissipation which
		  controls the incoming convective energy. This method has
		  the advantage as it does not require modifications or
		  extensions of the computational domain. Moreover, it does
		  not require a priori assumptions on the shape of the
		  boundary velocity field. We illustrate our approach through
		  several numerical examples relevant to blood and
		  respiratory flows, including Womersley flows and realistic
		  geometries coming from medical imaging. The performance of
		  the simulations is compared to recently reported
		  approaches.},
  JournalTitle	= {Journal of Computational Physics},
  ShortJournal	= {Journal of Computational Physics},
  URLDate	= {2016-11-15},
  Date		= {2016-05-15},
  Pages		= {260-278},
  Author	= {Bertoglio, CristÃ³bal and Caiazzo, Alfonso}
}

@Article{	  bertoglio_tangential_2014,
  Title		= {A Tangential Regularization Method for Backflow
		  Stabilization in Hemodynamics},
  Volume	= {261},
  JournalTitle	= {Journal of Computational Physics},
  Date		= {2014},
  Pages		= {162-171},
  Author	= {Bertoglio, CristÃ³bal and Caiazzo, Alfonso},
  Publisher	= {{Academic Press}}
}

@Book{		  berton-91,
  Annote	= {mhd},
  Author	= {Berton, R.},
  code		= {mhd 29},
  Publisher	= {Masson},
  Title		= {Magn{\'e}tohydrodynamique},
  Year		= {1991}
}

###Book{	  berton-91,
  Annote	= {mhd},
  Author	= {Berton, R.},
  code		= {mhd 29},
  Publisher	= {Masson},
  Title		= {Magn{\'e}tohydrodynamique},
  Year		= {1991}
}

@Article{	  besson-bourgeois-chevalier-rappaz-touzani-89,
  Annote	= {mhd, casting},
  Author	= {Bourgeois, J. and Chevalier, P.-A. and Picasso, M. and
		  Rappaz, J. and Touzani, R.},
  code		= {mhd14},
  Journal	= {Jour. Comp. Phys.},
  Number	= {2},
  Pages		= {482-507},
  Title		= {Numerical modelling of electromagnetic casting processes},
  Volume	= {92},
  Year		= {1989}
}

###Article{	  besson-bourgeois-chevalier-rappaz-touzani-89,
  Annote	= {mhd, casting},
  Author	= {Bourgeois, J. and Chevalier, P.-A. and Picasso, M. and
		  Rappaz, J. and Touzani, R.},
  code		= {mhd14},
  Journal	= {Jour. Comp. Phys.},
  Number	= {2},
  Pages		= {482-507},
  Title		= {Numerical modelling of electromagnetic casting processes},
  Volume	= {92},
  Year		= {1989}
}

@InProceedings{	  bestel2001biomechanical,
  Title		= {A biomechanical model of muscle contraction},
  Author	= {Bestel, Julie and Cl{\'e}ment, Fr{\'e}d{\'e}rique and
		  Sorine, Michel},
  BookTitle	= {International Conference on Medical Image Computing and
		  Computer-Assisted Intervention},
  Pages		= {1159--1161},
  Year		= {2001},
  Organization	= {Springer}
}

@InProceedings{	  bestel2001miccai,
  Title		= {A biomechanical model of muscle contraction},
  Author	= {Bestel, Julie and Cl{\'e}ment, Fr{\'e}d{\'e}rique and
		  Sorine, Michel},
  BookTitle	= {Medical Image Computing and Computer-Assisted
		  Intervention--MICCAI 2001},
  Pages		= {1159--1161},
  Year		= {2001},
  Organization	= {Springer}
}

@Article{	  bevan2016comparative,
  Title		= {A comparative study of fractional step method in its
		  quasi-implicit, semi-implicit and fully-explicit forms for
		  incompressible flows},
  Author	= {Bevan, Rhodri LT and Boileau, Etienne and van Loon, Raoul
		  and Lewis, Roland W and Nithiarasu, Perumal and Lewis, RW
		  and Lewis, RW},
  Journal	= {International Journal of Numerical Methods for Heat \&
		  Fluid Flow},
  Volume	= {26},
  Number	= {3/4},
  Year		= {2016},
  Publisher	= {Emerald Group Publishing Limited}
}

@Article{	  bh07,
  Author	= {Burman, E. and Hansbo, P.},
  Journal	= {J. Comput. Appl. Math.},
  Pages		= {35-51},
  Title		= {A unified stabilized method for {S}tokes' and {D}arcy's
		  equations},
  Volume	= {198},
  Year		= { 2007}
}

###Article{	  bh07,
  Author	= {Burman, E. and Hansbo, P.},
  Journal	= {J. Comput. Appl. Math.},
  Pages		= {35-51},
  Title		= {A unified stabilized method for {S}tokes' and {D}arcy's
		  equations},
  Volume	= {198},
  Year		= { 2007}
}

@Article{	  bibriv0,
  Author	= {M.C. Rivara},
  Journal	= { Commn. App. Numer. Methods},
  Pages		= {281--290},
  Title		= {A {3-D Refinement Algorithm Suitable for Adaptive and
		  Multi-Grid Techniques}},
  Volume	= {8},
  Year		= {1992}
}

###Article{	  bibriv0,
  Author	= {M.C. Rivara},
  Journal	= { Commn. App. Numer. Methods},
  Pages		= {281--290},
  Title		= {A {3-D Refinement Algorithm Suitable for Adaptive and
		  Multi-Grid Techniques}},
  Volume	= {8},
  Year		= {1992}
}

@Article{	  biehler2015towards,
  Title		= {Towards efficient uncertainty quantification in complex
		  and large-scale biomechanical problems based on a Bayesian
		  multi-fidelity scheme},
  Author	= {Biehler, Jonas and Gee, Michael W and Wall, Wolfgang A},
  Journal	= {Biomechanics and modeling in mechanobiology},
  Volume	= {14},
  Number	= {3},
  Pages		= {489--513},
  Year		= {2015},
  Publisher	= {Springer}
}

@InProceedings{	  billet-sermesant-delingette-ayache-08,
  Author	= {Billet, F. and Sermesant,M. and Delingette, H. and Ayache,
		  N.},
  BookTitle	= {Proc. of the Workshop on Computational Biomechanics for
		  Medicine III. (Workshop MICCAI-2008)},
  date-added	= {2009-03-10 12:20:33 -0700},
  date-modified	= {2009-03-10 12:22:13 -0700},
  Editor	= {K. Miller and P.M.F. Nielsen},
  Month		= {September},
  Title		= {Cardiac Motion Recovery by Coupling an Electromechanical
		  Model and Cine-{MRI} Data: First Steps},
  Year		= 2008
}

###InProceedings{ billet-sermesant-delingette-ayache-08,
  Author	= {Billet, F. and Sermesant,M. and Delingette, H. and Ayache,
		  N.},
  BookTitle	= {Proc. of the Workshop on Computational Biomechanics for
		  Medicine III. (Workshop MICCAI-2008)},
  date-added	= {2009-03-10 12:20:33 -0700},
  date-modified	= {2009-03-10 12:22:13 -0700},
  Editor	= {K. Miller and P.M.F. Nielsen},
  Month		= {September},
  Title		= {Cardiac Motion Recovery by Coupling an Electromechanical
		  Model and Cine-{MRI} Data: First Steps},
  Year		= 2008
}

@InProceedings{	  billet2008miccai,
  Title		= {Cardiac Motion Recovery by Coupling an Electromechanical
		  Model and Cine-{MRI} Data: First Steps},
  Author	= {Billet, F. and Sermesant,M. and Delingette, H. and Ayache,
		  N.},
  BookTitle	= {Proc. of the Workshop on Computational Biomechanics for
		  Medicine III. (Workshop MICCAI-2008)},
  Year		= {2008},
  Editor	= {K. Miller and P.M.F. Nielsen},
  Month		= {September},
  date-added	= {2009-03-10 12:20:33 -0700},
  date-modified	= {2009-03-10 12:22:13 -0700},
  Keywords	= {CRT, motion}
}

@Collection{	  bird_dynamics_1987,
  Location	= {{New York}},
  Title		= {Dynamics of Polymeric Liquids},
  Edition	= {2nd ed},
  ISBN		= {978-0-471-80245-7 978-0-471-80244-0},
  PageTotal	= {2},
  Publisher	= {{Wiley}},
  Year		= {1987},
  Editor	= {Bird, R. Byron}
}

@Article{	  birks2006nejm,
  Title		= {Left Ventricular Assist Device and Drug Therapy for the
		  Reversal of Heart Failure},
  Author	= {Birks, Emma J. and Tansley, Patrick D. and Hardy, James
		  and George, Robert S. and Bowles, Christopher T. and Burke,
		  Margaret and Banner, Nicholas R. and Khaghani, Asghar and
		  Yacoub, Magdi H.},
  Journal	= {New England Journal of Medicine},
  Year		= {2006},
  Note		= {PMID: 17079761},
  Number	= {18},
  Pages		= {1873-1884},
  Volume	= {355},
  DOI		= {10.1056/NEJMoa053063},
  EPrint	= {http://dx.doi.org/10.1056/NEJMoa053063},
  File		= {birks06.pdf:birks06.pdf:PDF},
  timestamp	= {2015/09/14},
  URL		= {http://dx.doi.org/10.1056/NEJMoa053063}
}

@Article{	  bishop2010,
  Author	= {Bishop, Martin J. and Plank, Gernot and Burton, Rebecca A.
		  B. and Schneider, JÃ¼rgen E. and Gavaghan, David J. and
		  Grau, Vicente and Kohl, Peter},
  Title		= {Development of an anatomically detailed MRI-derived rabbit
		  ventricular model and assessment of its impact on
		  simulations of electrophysiological function},
  Volume	= {298},
  Number	= {2},
  Pages		= {H699-H718},
  Year		= {February 2010},
  DOI		= {10.1152/ajpheart.00606.2009},
  Journal	= {American Journal of Physiology - Heart and Circulatory
		  Physiology}
}

@Article{	  bjorstad-widlund-86,
  Author	= {Bjorstad, P.E. and Widlund, O.B.},
  Journal	= {SIAM J. Numer. Anal.},
  Number	= {23},
  Pages		= {1097--1120},
  Title		= {Iterative methods for the solution of elliptic problems on
		  regions partitioned in subdomains},
  Volume	= {31},
  Year		= {1986}
}

###Article{	  bjorstad-widlund-86,
  Author	= {Bjorstad, P.E. and Widlund, O.B.},
  Journal	= {SIAM J. Numer. Anal.},
  Number	= {23},
  Pages		= {1097--1120},
  Title		= {Iterative methods for the solution of elliptic problems on
		  regions partitioned in subdomains},
  Volume	= {31},
  Year		= {1986}
}

@Article{	  blanc-entner-80,
  Author	= {Blanc, J.M. and Entner, P.},
  Journal	= {AIME},
  Pages		= {285-295},
  Title		= {Application of computer calculations to improve
		  electromagnetic behaviour of pots},
  Year		= {1980}
}

###Article{	  blanc-entner-80,
  Author	= {Blanc, J.M. and Entner, P.},
  Journal	= {AIME},
  Pages		= {285-295},
  Title		= {Application of computer calculations to improve
		  electromagnetic behaviour of pots},
  Year		= {1980}
}

@Article{	  blancher-creff-gagneux-01,
  Author	= {Blancher, S. and Creff, R. and Gagneux, G. and Lacabanne,
		  B. and Montel, F. and Trujillo, D.},
  code		= {por14},
  Journal	= {M2AN Math. Model. Numer. Anal.},
  Number	= {3},
  Pages		= {481--512},
  Title		= {Multicomponent flow in a porous medium. {A}dsorption and
		  soret effect phenomena: local study and upscaling process},
  Volume	= {35},
  Year		= {2001}
}

###Article{	  blancher-creff-gagneux-01,
  Author	= {Blancher, S. and Creff, R. and Gagneux, G. and Lacabanne,
		  B. and Montel, F. and Trujillo, D.},
  code		= {por14},
  Journal	= {M2AN Math. Model. Numer. Anal.},
  Number	= {3},
  Pages		= {481--512},
  Title		= {Multicomponent flow in a porous medium. {A}dsorption and
		  soret effect phenomena: local study and upscaling process},
  Volume	= {35},
  Year		= {2001}
}

@Article{	  bloch1946physrev,
  Title		= {Nuclear Induction},
  Author	= {Bloch, F.},
  Journal	= {Physical Review},
  Year		= {1946},
  Number	= {7-8},
  Pages		= {460--474},
  Volume	= {70},
  Abstract	= {The magnetic moments of nuclei in normal matter will
		  result in a nuclear paramagnetic polarization upon
		  establishment of equilibrium in a constant magnetic field.
		  It is shown that a radiofrequency field at right angles to
		  the constant field causes a forced precession of the total
		  polarization around the constant field with decreasing
		  latitude as the Larmor frequency approaches adiabatically
		  the frequency of the r-f field. Thus there results a
		  component of the nuclear polarization at right angles to
		  both the constant and the r-f field and it is shown that
		  under normal laboratory conditions this component can
		  induce observable voltages. In Section 3 we discuss this
		  nuclear induction, considering the effect of external
		  fields only, while in Section 4 those modifications are
		  described which originate from internal fields and finite
		  relaxation times.},
  DOI		= {10.1103/PhysRev.70.460},
  owner		= {david},
  timestamp	= {2015-05-05 19:49:42},
  URL		= {http://link.aps.org/doi/10.1103/PhysRev.70.460},
  URLDate	= {2015-05-05}
}

@InCollection{	  blum-ledimet-navon-08,
  Author	= {Blum, J. and Le Dimet, F. X. and Navon, I. M.},
  BookTitle	= {Handbook of Numerical Analysis: Computational Methods for
		  the Atmosphere and the Oceans},
  date-added	= {2009-03-10 11:40:58 -0700},
  date-modified	= {2009-03-10 12:02:08 -0700},
  Editor	= {Temam, R. and Tribbia, J.},
  Publisher	= {Elsevier},
  Title		= {Data assimilation for geophysical fluids},
  Year		= {2008}
}

###InCollection{  blum-ledimet-navon-08,
  Author	= {Blum, J. and Le Dimet, F. X. and Navon, I. M.},
  BookTitle	= {Handbook of Numerical Analysis: Computational Methods for
		  the Atmosphere and the Oceans},
  date-added	= {2009-03-10 11:40:58 -0700},
  date-modified	= {2009-03-10 12:02:08 -0700},
  Editor	= {Temam, R. and Tribbia, J.},
  Publisher	= {Elsevier},
  Title		= {Data assimilation for geophysical fluids},
  Year		= {2008}
}

@Article{	  blum-verron-98,
  Author	= {Luong, Bruno and Blum, Jacques and Verron, Jacques},
  Title		= {A variational method for the resolution of a data
		  assimilation problem in oceanography},
  Journal	= {Inverse Problems},
  Volume	= {14},
  Year		= {1998},
  Number	= {4},
  Pages		= {979--997}
}

###Article{	  blum-verron-98,
  Author	= {Luong, Bruno and Blum, Jacques and Verron, Jacques},
  Title		= {A variational method for the resolution of a data
		  assimilation problem in oceanography},
  Journal	= {Inverse Problems},
  Volume	= {14},
  Year		= {1998},
  Number	= {4},
  Pages		= {979--997}
}

@Article{	  bock_4d_2010,
  Title		= {{{4D}} Phase Contrast {{MRI}} at 3 {{T}}: {{Effect}} of
		  Standard and Blood-Pool Contrast Agents on {{SNR}},
		  {{PC}}-{{MRA}}, and Blood Flow Visualization},
  ShortTitle	= {{{4D}} Phase Contrast {{MRI}} at 3 {{T}}},
  Author	= {Bock, Jelena and Frydrychowicz, Alex and Stalder,
		  Aur{\'e}lien F. and Bley, Thorsten A. and Burkhardt, Hans
		  and Hennig, J{\"u}rgen and Markl, Michael},
  Year		= {2010},
  Volume	= {63},
  Pages		= {330--338},
  Journal	= {Magnetic Resonance in Medicine: An Official Journal of the
		  International Society for Magnetic Resonance in Medicine},
  Number	= {2}
}

@Article{	  bock_vivo_2011,
  Title		= {In Vivo Noninvasive {{4D}} Pressure Difference Mapping in
		  the Human Aorta: {{Phantom}} Comparison and Application in
		  Healthy Volunteers and Patients},
  ShortTitle	= {In Vivo Noninvasive {{4D}} Pressure Difference Mapping in
		  the Human Aorta},
  Author	= {Bock, Jelena and Frydrychowicz, Alex and Lorenz, Ramona
		  and Hirtler, Daniel and Barker, Alex J. and Johnson, Kevin
		  M. and Arnold, Raoul and Burkhardt, Hans and Hennig,
		  Juergen and Markl, Michael},
  Year		= {2011},
  Volume	= {66},
  Pages		= {1079--1088},
  ISSN		= {1522-2594},
  DOI		= {10.1002/mrm.22907},
  Abstract	= {In this work, we present a systematic phantom comparison
		  and clinical application of noninvasive pressure difference
		  mapping in the human aorta based on time-resolved 3D phase
		  contrast data. Relative pressure differences were
		  calculated based on integration and iterative refinement of
		  pressure gradients derived from MR-based three-directional
		  velocity vector fields (flow-sensitive 4D MRI with
		  spatial/temporal resolution {$\sim$} 2.1 mm3/40 ms) using
		  the Navier-Stokes equation. After in vitro study using a
		  stenosis phantom, time-resolved 3D pressure gradients were
		  systematically evaluated in the thoracic aorta in a group
		  of 12 healthy subjects and 6 patients after repair for
		  aortic coarctation. Results from the phantom study showed
		  good agreement with expected values and standard methods
		  (Bernoulli). Data of healthy subjects showed good
		  intersubject consistency and good agreement with the
		  literature. In patients, pressure waveforms showed elevated
		  peak values. Pressure gradients across the stenosis were
		  compared with reference measurements from Doppler
		  ultrasound. The MRI findings demonstrated a significant
		  correlation (r = 0.96, P {$<$} 0.05) but moderate
		  underestimation (14.7\% {$\pm$} 15.5\%) compared with
		  ultrasound when the maximum pressure difference for all
		  possible paths connecting proximal and distal locations of
		  the stenosis were used. This study demonstrates the
		  potential of the applied approach to derive additional
		  quantitative information such as pressure gradients from
		  time-resolved 3D phase contrast MRI. Magn Reson Med, 2011.
		  \textcopyright{} 2011 Wiley-Liss, Inc.},
  Journal	= {Magnetic Resonance in Medicine},
  Language	= {en},
  Number	= {4}
}

###Article{	  bock_vivo_2011,
  langid	= {english},
  Title		= {In Vivo Noninvasive {{4D}} Pressure Difference Mapping in
		  the Human Aorta: {{Phantom}} Comparison and Application in
		  Healthy Volunteers and Patients},
  Volume	= {66},
  ISSN		= {1522-2594},
  URL		= {https://onlinelibrary.wiley.com/doi/abs/10.1002/mrm.22907},
  DOI		= {10.1002/mrm.22907},
  ShortTitle	= {In Vivo Noninvasive {{4D}} Pressure Difference Mapping in
		  the Human Aorta},
  Abstract	= {In this work, we present a systematic phantom comparison
		  and clinical application of noninvasive pressure difference
		  mapping in the human aorta based on time-resolved 3D phase
		  contrast data. Relative pressure differences were
		  calculated based on integration and iterative refinement of
		  pressure gradients derived from MR-based three-directional
		  velocity vector fields (flow-sensitive 4D MRI with
		  spatial/temporal resolution â¼ 2.1 mm3/40 ms) using the
		  Navier-Stokes equation. After in vitro study using a
		  stenosis phantom, time-resolved 3D pressure gradients were
		  systematically evaluated in the thoracic aorta in a group
		  of 12 healthy subjects and 6 patients after repair for
		  aortic coarctation. Results from the phantom study showed
		  good agreement with expected values and standard methods
		  (Bernoulli). Data of healthy subjects showed good
		  intersubject consistency and good agreement with the
		  literature. In patients, pressure waveforms showed elevated
		  peak values. Pressure gradients across the stenosis were
		  compared with reference measurements from Doppler
		  ultrasound. The MRI findings demonstrated a significant
		  correlation (r = 0.96, P {$<$} 0.05) but moderate
		  underestimation (14.7\% Â± 15.5\%) compared with ultrasound
		  when the maximum pressure difference for all possible paths
		  connecting proximal and distal locations of the stenosis
		  were used. This study demonstrates the potential of the
		  applied approach to derive additional quantitative
		  information such as pressure gradients from time-resolved
		  3D phase contrast MRI. Magn Reson Med, 2011. Â© 2011
		  Wiley-Liss, Inc.},
  Number	= {4},
  JournalTitle	= {Magnetic Resonance in Medicine},
  URLDate	= {2019-01-28},
  Year		= {2011},
  Pages		= {1079-1088},
  Author	= {Bock, Jelena and Frydrychowicz, Alex and Lorenz, Ramona
		  and Hirtler, Daniel and Barker, Alex J. and Johnson, Kevin
		  M. and Arnold, Raoul and Burkhardt, Hans and Hennig,
		  Juergen and Markl, Michael}
}

@Collection{	  bodnar_fluid-structure_2014,
  langid	= {english},
  Location	= {{Basel}},
  Title		= {Fluid-{{Structure Interaction}} and {{Biomedical
		  Applications}}},
  ISBN		= {978-3-0348-0821-7 978-3-0348-0822-4},
  URL		= {http://link.springer.com/10.1007/978-3-0348-0822-4},
  Series	= {Advances in {{Mathematical Fluid Mechanics}}},
  Publisher	= {{Springer Basel}},
  URLDate	= {2019-02-20},
  Year		= {2014},
  Editor	= {BodnÃ¡r, TomÃ¡Å¡ and Galdi, Giovanni P. and NeÄasovÃ¡,
		  Å Ã¡rka},
  DOI		= {10.1007/978-3-0348-0822-4}
}

@Article{	  bolster-mills-hornberger-01,
  Author	= {Bolster, C.H. and Mills, A.L. and Hornberger, G. M. and
		  Herman, J.S.},
  code		= {por17},
  Journal	= {Journal of Contaminant Hydrology},
  Pages		= {287-305},
  Title		= {Effect of surface coatings, grain size, and ionic strength
		  on the maximum attainable coverage of bacteria on sand
		  surfaces},
  Volume	= {50},
  Year		= {2001}
}

###Article{	  bolster-mills-hornberger-01,
  Author	= {Bolster, C.H. and Mills, A.L. and Hornberger, G. M. and
		  Herman, J.S.},
  code		= {por17},
  Journal	= {Journal of Contaminant Hydrology},
  Pages		= {287-305},
  Title		= {Effect of surface coatings, grain size, and ionic strength
		  on the maximum attainable coverage of bacteria on sand
		  surfaces},
  Volume	= {50},
  Year		= {2001}
}

@InCollection{	  bonito2015modified,
  Title		= {Modified pressure-correction projection methods: Open
		  boundary and variable time stepping},
  Author	= {Bonito, Andrea and Guermond, Jean-Luc and Lee, Sanghyun},
  BookTitle	= {Numerical Mathematics and Advanced Applications-ENUMATH
		  2013},
  Pages		= {623--631},
  Year		= {2015},
  Publisher	= {Springer}
}

@Article{	  borchers-miyakawa-92,
  Author	= {Borchers, W. and Miyakawa, T.},
  Journal	= {Arch. Rat. Mech. Anal},
  Pages		= {273-295},
  Title		= {{L$^2$}-decay for {Navier-Stokes} flows in unbounded
		  domains with application to exterior stationary flows},
  Volume	= {118},
  Year		= {1992}
}

###Article{	  borchers-miyakawa-92,
  Author	= {Borchers, W. and Miyakawa, T.},
  Journal	= {Arch. Rat. Mech. Anal},
  Pages		= {273-295},
  Title		= {{L$^2$}-decay for {Navier-Stokes} flows in unbounded
		  domains with application to exterior stationary flows},
  Volume	= {118},
  Year		= {1992}
}

@InProceedings{	  boretti-89,
  Author	= {Boretti, A.},
  BookTitle	= {Numerical combustion, Lecture notes in physics},
  Editor	= {Dervieux, A. and Larrouturou, B.},
  Publisher	= {Springer-Verlag, Heidelberg},
  Title		= {An explicit {R}unge-{K}utta method for turbulent reactive
		  flow calculations},
  Volume	= {351},
  Year		= {1989}
}

###InProceedings{ boretti-89,
  Author	= {Boretti, A.},
  BookTitle	= {Numerical combustion, Lecture notes in physics},
  Editor	= {Dervieux, A. and Larrouturou, B.},
  Publisher	= {Springer-Verlag, Heidelberg},
  Title		= {An explicit {R}unge-{K}utta method for turbulent reactive
		  flow calculations},
  Volume	= {351},
  Year		= {1989}
}

@Article{	  borouchaki-frey-97,
  Author	= {Borouchaki, H. and Frey, P.J.},
  Journal	= {Int. J. Numer. Methods Eng.},
  Pages		= {915-934},
  Title		= {Adaptive triangular-quadrilateral mesh generation},
  Volume	= {41},
  Year		= {1997}
}

###Article{	  borouchaki-frey-97,
  Author	= {Borouchaki, H. and Frey, P.J.},
  Journal	= {Int. J. Numer. Methods Eng.},
  Pages		= {915-934},
  Title		= {Adaptive triangular-quadrilateral mesh generation},
  Volume	= {41},
  Year		= {1997}
}

@Book{		  bossavit-93,
  Author	= {Bossavit, A.},
  Publisher	= {Springer-{Verlag}},
  Title		= {Electromagn{\'e}tisme en vue de la mod{\'e}lisation},
  Year		= {1993}
}

###Book{	  bossavit-93,
  Author	= {Bossavit, A.},
  Publisher	= {Springer-{Verlag}},
  Title		= {Electromagn{\'e}tisme en vue de la mod{\'e}lisation},
  Year		= {1993}
}

@Book{		  bossavit-emson-mayergoyz-91,
  Author	= {Bossavit, A. and Emson, C. and Mayergoyz, I.D.},
  Publisher	= {Eyrolles},
  Title		= {M{\'e}thodes num{\'e}riques en {\'e}lectromagn{\'e}tisme},
  Year		= {1991}
}

###Book{	  bossavit-emson-mayergoyz-91,
  Author	= {Bossavit, A. and Emson, C. and Mayergoyz, I.D.},
  Publisher	= {Eyrolles},
  Title		= {M{\'e}thodes num{\'e}riques en {\'e}lectromagn{\'e}tisme},
  Year		= {1991}
}

@Article{	  botker2012cr,
  Title		= {Measuring myocardial salvage.},
  Author	= {B{\o}tker, Hans Erik and Kaltoft, Anne Kjer and Pedersen,
		  Steen Fjord and Kim, Won Yong},
  Journal	= {Cardiovasc Res},
  Year		= {2012},
  Month		= {May},
  Number	= {2},
  Pages		= {266--275},
  Volume	= {94},
  Abstract	= {The efficacy of cardioprotective strategies can be
		  quantified by myocardial salvage as an indicator of
		  therapeutic benefit. Salvage is calculated as the
		  difference between the area at risk (AAR) and the final
		  infarct size (FIS). AAR has been quantified by angiographic
		  assessment followed by quantification of FIS by biochemical
		  ischaemic markers or imaging modalities such as
		  cardiovascular magnetic resonance (CMR). Angiographical
		  methods may overestimate AAR and since methodological
		  differences may exist between different modalities, the use
		  of different modalities for estimating AAR and FIS may not
		  be recommended. (99m)Technetium (Tc)-Sestamibi
		  single-photon emission tomography (SPECT) allows
		  quantification of AAR and FIS by tracer injection prior to
		  revascularization and after 1 month, respectively. SPECT
		  provides the most validated measure of myocardial salvage
		  and has been utilized in multiple randomized clinical
		  trials. However, SPECT is logistically challenging,
		  expensive, and includes radiation exposure. More recently,
		  a large number of studies have suggested that CMR can
		  determine salvage in a single examination by combining
		  measures of myocardial oedema in the AAR exposed to
		  ischaemia reperfusion with FIS quantification by late
		  gadolinium enhancement. The T1- and T2-weighted CMR
		  approaches for quantification of AAR utilize non-contrast,
		  early and late gadolinium enhancement techniques. The
		  technical progress, high spatial resolution and the
		  potential for retrospective quantification of the AAR makes
		  CMR the most appropriate technique for assessment of
		  myocardial salvage. However, the optimum CMR technique for
		  assessment of myocardial AAR remains to be defined.
		  Consequently, we recommend a comprehensive CMR protocol to
		  ensure reliable assessment of myocardial salvage.},
  DOI		= {10.1093/cvr/cvs081},
  Institution	= {Department of Cardiology, Aarhus University Hospital
		  Skejby, Aarhus N, Denmark. heb@dadlnet.dk},
  Keywords	= {Humans; Magnetic Resonance Imaging, methods; Myocardial
		  Infarction, diagnosis/radiography/radionuclide imaging;
		  Myocardium, pathology; Risk Assessment; Technetium,
		  diagnostic use; Tomography, Emission-Computed,
		  Single-Photon, methods},
  Language	= {eng},
  medline-pst	= {ppublish},
  owner		= {stoeckc},
  pii		= {cvs081},
  pmid		= {22311720},
  timestamp	= {2015.07.24},
  URL		= {http://dx.doi.org/10.1093/cvr/cvs081}
}

@Article{	  botnar-rappitsch-00,
  Author	= {Botnar, R. and Rappitsch, G. and Scheidegger, M.B. and
		  Liepsch, D. and Perktold, K. and Boesiger, P.},
  Journal	= {J. Biomechanics},
  Pages		= {137--144},
  Title		= {Hemodynamics in the carotid artery bifurcation: A
		  comparison between numerical simulations and in-vitro
		  measurements},
  Volume	= {33},
  Year		= {2000}
}

###Article{	  botnar-rappitsch-00,
  Author	= {Botnar, R. and Rappitsch, G. and Scheidegger, M.B. and
		  Liepsch, D. and Perktold, K. and Boesiger, P.},
  Journal	= {J. Biomechanics},
  Pages		= {137--144},
  Title		= {Hemodynamics in the carotid artery bifurcation: A
		  comparison between numerical simulations and in-vitro
		  measurements},
  Volume	= {33},
  Year		= {2000}
}

@Article{	  bouaou_analysis_2019,
  langid	= {english},
  Title		= {Analysis of Aortic Pressure Fields from {{4D}} Flow
		  {{MRI}} in Healthy Volunteers: {{Associations}} with Age
		  and Left Ventricular Remodeling: {{4D Flow MRI Aortic
		  Pressure}} in {{Aging}}},
  ISSN		= {10531807},
  URL		= {http://doi.wiley.com/10.1002/jmri.26673},
  DOI		= {10.1002/jmri.26673},
  ShortTitle	= {Analysis of Aortic Pressure Fields from {{4D}} Flow
		  {{MRI}} in Healthy Volunteers},
  JournalTitle	= {Journal of Magnetic Resonance Imaging},
  URLDate	= {2019-02-27},
  Year		= {2019-02-04},
  Author	= {Bouaou, Kevin and Bargiotas, Ioannis and Dietenbeck,
		  Thomas and Bollache, Emilie and Soulat, Gilles and Craiem,
		  Damian and Houriez-Gombaud-Saintonge, Sophia and De Cesare,
		  Alain and Gencer, Umit and Giron, Alain and Redheuil, Alban
		  and Messas, Emmanuel and Lucor, Didier and Mousseaux, Elie
		  and Kachenoura, Nadjia}
}

@Article{	  boulakia-05,
  Author	= {Boulakia, M.},
  date-added	= {2012-02-27 09:44:22 +0000},
  date-modified	= {2012-02-27 09:44:34 +0000},
  Journal	= {Journal de Math{\'e}matiques Pures et Appliqu\'es},
  Number	= {11},
  Pages		= {1515--1554},
  Title		= {Existence of weak solutions for an interaction problem
		  between an elastic structure and a compressible viscous
		  fluid},
  Volume	= {84},
  Year		= {2005}
}

###Article{	  boulakia-05,
  Author	= {Boulakia, M.},
  date-added	= {2012-02-27 09:44:22 +0000},
  date-modified	= {2012-02-27 09:44:34 +0000},
  Journal	= {Journal de Math{\'e}matiques Pures et Appliqu\'es},
  Number	= {11},
  Pages		= {1515--1554},
  Title		= {Existence of weak solutions for an interaction problem
		  between an elastic structure and a compressible viscous
		  fluid},
  Volume	= {84},
  Year		= {2005}
}

@InCollection{	  bourgeois-chevalier-picasso-rappaz-touzani-92,
  Annote	= {mhd, casting},
  Author	= {Bourgeois, J. and Chevalier, P.-A. and Picasso, M. and
		  Rappaz, J. and Touzani, R.},
  BookTitle	= {Finite Element in Fluids},
  Chapter	= {19},
  code		= {mhd13},
  Editor	= {T.J. Chung},
  Pages		= {479-507},
  Publisher	= {Hemisphere Publishing Corporation},
  Series	= {Series in Computational and physical processes in
		  mechanics and thermal sciences},
  Title		= {Magnetohydrodynamic problem in the aluminium industry},
  Volume	= {8},
  Year		= {1992}
}

###InCollection{  bourgeois-chevalier-picasso-rappaz-touzani-92,
  Annote	= {mhd, casting},
  Author	= {Bourgeois, J. and Chevalier, P.-A. and Picasso, M. and
		  Rappaz, J. and Touzani, R.},
  BookTitle	= {Finite Element in Fluids},
  Chapter	= {19},
  code		= {mhd13},
  Editor	= {T.J. Chung},
  Pages		= {479-507},
  Publisher	= {Hemisphere Publishing Corporation},
  Series	= {Series in Computational and physical processes in
		  mechanics and thermal sciences},
  Title		= {Magnetohydrodynamic problem in the aluminium industry},
  Volume	= {8},
  Year		= {1992}
}

@Article{	  bovendeerd2012jbiomech,
  Title		= {Modeling of cardiac growth and remodeling of myofiber
		  orientation },
  Author	= {Peter H.M. Bovendeerd},
  Journal	= {Journal of Biomechanics },
  Year		= {2012},
  Note		= {Special Issue on Cardiovascular Solid Mechanics },
  Number	= {5},
  Pages		= {872 - 881},
  Volume	= {45},
  Abstract	= {The heart has the ability to respond to long-term changes
		  in its environment through changes in mass (growth), shape
		  (morphogenesis) and tissue properties (remodeling). For
		  improved quantitative understanding of cardiac growth and
		  remodeling (G&amp;R) experimental studies need to be
		  complemented by mathematical models. This paper reviews
		  models for cardiac growth and remodeling of myofiber
		  orientation, as induced by mechanical stimuli. A
		  distinction is made between optimization models, that focus
		  on the end stage of G&amp;R, and adaptation models, that
		  aim to more closely describe the mechanistic relation
		  between stimulus and effect. While many models demonstrate
		  qualitatively promising results, a lot of questions remain,
		  e.g. with respect to the choice of the stimulus for G&amp;R
		  or the long-term stability of the outcome of the model. A
		  continued effort combining information on
		  mechanotransduction at the cellular level, experimental
		  observations on G&amp;R at organ level, and testing of
		  hypotheses on stimulus?effect relations in mathematical
		  models is needed to answer these questions on cardiac
		  G&amp;R. Ultimately, models of cardiac G&amp;R seem
		  indispensable for patient-specific modeling, both to
		  reconstruct the actual state of the heart and to assess the
		  long-term effect of potential interventions. },
  DOI		= {http://dx.doi.org/10.1016/j.jbiomech.2011.11.029},
  File		= {bovendeerd12.pdf:bovendeerd12.pdf:PDF},
  ISSN		= {0021-9290},
  Keywords	= {Adaptation},
  timestamp	= {2015/09/22},
  URL		= {http://www.sciencedirect.com/science/article/pii/S0021929011007111}
}

@Article{	  bozzi_uncertainty_2017,
  Title		= {Uncertainty Propagation of Phase Contrast-{{MRI}} Derived
		  Inlet Boundary Conditions in Computational Hemodynamics
		  Models of Thoracic Aorta},
  Volume	= {20},
  ISSN		= {1025-5842},
  URL		= {https://doi.org/10.1080/10255842.2017.1334770},
  DOI		= {10.1080/10255842.2017.1334770},
  Abstract	= {This study investigates the impact that uncertainty in
		  phase contrast-MRI derived inlet boundary conditions has on
		  patient-specific computational hemodynamics models of the
		  healthy human thoracic aorta. By means of Monte Carlo
		  simulations, we provide advice on where, when and how, it
		  is important to account for this source of uncertainty. The
		  study shows that the uncertainty propagates not only to the
		  intravascular flow, but also to the shear stress
		  distribution at the vessel wall. More specifically, the
		  results show an increase in the uncertainty of the
		  predicted output variables, with respect to the input
		  uncertainty, more marked for blood pressure and wall shear
		  stress. The methodological approach proposed here can be
		  easily extended to study uncertainty propagation in both
		  healthy and pathological computational hemodynamic
		  models.},
  Number	= {10},
  JournalTitle	= {Computer Methods in Biomechanics and Biomedical
		  Engineering},
  URLDate	= {2019-02-20},
  Year		= {2017-07-27},
  Pages		= {1104-1112},
  Author	= {Bozzi, Silvia and Morbiducci, Umberto and Gallo, Diego and
		  Ponzini, Raffaele and Rizzo, Giovanna and Bignardi,
		  Cristina and Passoni, Giuseppe},
  EPrintType	= {pmid},
  EPrint	= {28553722}
}

@Article{	  brackbill-76,
  Author	= {Brackbill, J.U.},
  code		= {mhd44},
  Journal	= {Methods in Computational Physics},
  Pages		= {1-41},
  Title		= {Numerical magnetohydrodynamics for high-beta plasmas},
  Volume	= {16},
  Year		= {1976}
}

###Article{	  brackbill-76,
  Author	= {Brackbill, J.U.},
  code		= {mhd44},
  Journal	= {Methods in Computational Physics},
  Pages		= {1-41},
  Title		= {Numerical magnetohydrodynamics for high-beta plasmas},
  Volume	= {16},
  Year		= {1976}
}

@Article{	  brackbill-pracht-73,
  Author	= {Brackbill, J.U. and Pracht, W.E.},
  code		= {mhd43},
  Journal	= {J. Comp. Phys.},
  Pages		= {455-482},
  Title		= {An Implicit, Almost-Lagrangian Algorithm for
		  Magnetohydrodynamics},
  Volume	= {13},
  Year		= {1973}
}

###Article{	  brackbill-pracht-73,
  Author	= {Brackbill, J.U. and Pracht, W.E.},
  code		= {mhd43},
  Journal	= {J. Comp. Phys.},
  Pages		= {455-482},
  Title		= {An Implicit, Almost-Lagrangian Algorithm for
		  Magnetohydrodynamics},
  Volume	= {13},
  Year		= {1973}
}

@Article{	  brady-morris-97,
  Author	= {Brady, J. F and Morris, J-F.},
  code		= {cel18},
  Journal	= {J. Fluid Mech.},
  Pages		= {103--139},
  Title		= {Microstructure of strongly sheared suspensions and its
		  impact on rheology and diffusion},
  Volume	= {348},
  Year		= {1997}
}

###Article{	  brady-morris-97,
  Author	= {Brady, J. F and Morris, J-F.},
  code		= {cel18},
  Journal	= {J. Fluid Mech.},
  Pages		= {103--139},
  Title		= {Microstructure of strongly sheared suspensions and its
		  impact on rheology and diffusion},
  Volume	= {348},
  Year		= {1997}
}

@Article{	  braess-wriggers-00,
  Author	= {Braess, H. and Wriggers, P.},
  code		= {mob10},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Number	= 190,
  Pages		= {95-109},
  Title		= {Arbitrary {L}agrangian {E}ulerian finite element analysis
		  of free surface flow},
  Volume	= 2000,
  Year		= 2000
}

###Article{	  braess-wriggers-00,
  Author	= {Braess, H. and Wriggers, P.},
  code		= {mob10},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Number	= 190,
  Pages		= {95-109},
  Title		= {Arbitrary {L}agrangian {E}ulerian finite element analysis
		  of free surface flow},
  Volume	= 2000,
  Year		= 2000
}

@Article{	  bramwell-hill-22,
  Author	= {Bramwell, J.C. and Hill, A.V.},
  Title		= {The Velocity of the Pulse Wave in Man},
  Volume	= {93},
  Number	= {652},
  Pages		= {298-306},
  Year		= {1922},
  DOI		= {10.1098/rspb.1922.0022},
  Journal	= {Proceedings of the Royal Society of London. Series B,
		  Containing Papers of a Biological Character}
}

###Article{	  bramwell-hill-22,
  Author	= {Bramwell, J.C. and Hill, A.V.},
  Title		= {The Velocity of the Pulse Wave in Man},
  Volume	= {93},
  Number	= {652},
  Pages		= {298-306},
  Year		= {1922},
  DOI		= {10.1098/rspb.1922.0022},
  URL		= {http://rspb.royalsocietypublishing.org/content/93/652/298.short},
  EPrint	= {http://rspb.royalsocietypublishing.org/content/93/652/298.full.pdf+html},
  Journal	= {Proceedings of the Royal Society of London. Series B,
		  Containing Papers of a Biological Character}
}

@Article{	  branch1999subspace,
  Author	= {Branch, Mary Ann and Thomas F. Coleman and Li, Yuying},
  Title		= {A Subspace, Interior, and Conjugate Gradient Method for
		  Large-Scale Bound-Constrained Minimization Problems},
  Journal	= {SIAM Journal on Scientific Computing},
  Year		= {1999},
  Volume	= {21},
  Pages		= {1-23},
  Abstract	= {A subspace adaptation of the Coleman-Li trust region and
		  interior method is proposed for solving large-scale
		  bound-constrained minimization problems. This method can be
		  implemented with either sparse Cholesky factorization or
		  conjugate gradient computation. Under reasonable conditions
		  the convergence properties of this subspace trust region
		  method are as strong as those of its full-space version.
		  Computational},
  timestamp	= {2015.06.02}
}

@Article{	  brenier-99,
  Author	= {Brenier, Y.},
  Journal	= {Nonlinearity},
  Number	= {3},
  Pages		= {495--512},
  Title		= {Homogeneous hydrostatic flows with convex velocity
		  profiles},
  Volume	= {12},
  Year		= {1999}
}

###Article{	  brenier-99,
  Author	= {Brenier, Y.},
  Journal	= {Nonlinearity},
  Number	= {3},
  Pages		= {495--512},
  Title		= {Homogeneous hydrostatic flows with convex velocity
		  profiles},
  Volume	= {12},
  Year		= {1999}
}

@Article{	  brenner-99,
  Author	= {Brenner, S.},
  Journal	= {Numerische Mathematik},
  Number	= {2},
  Pages		= {187--203},
  Title		= {The condition number of the Schur complement in domain
		  decomposition},
  Volume	= {83},
  Year		= {1999}
}

###Article{	  brenner-99,
  Author	= {Brenner, S.},
  Journal	= {Numerische Mathematik},
  Number	= {2},
  Pages		= {187--203},
  Title		= {The condition number of the Schur complement in domain
		  decomposition},
  Volume	= {83},
  Year		= {1999}
}

@Book{		  brenner-scott-02,
  Title		= {{The mathematical theory of finite element methods}},
  Author	= {Brenner, S.~C. and Scott, L.~R.},
  Year		= {2002},
  Publisher	= {Springer Verlag}
}

###Book{	  brenner-scott-02,
  Title		= {{The mathematical theory of finite element methods}},
  Author	= {Brenner, S.~C. and Scott, L.~R.},
  Year		= {2002},
  Publisher	= {Springer Verlag}
}

@Book{		  brezis-83,
  Author	= {Brezis, H.},
  Publisher	= {Masson},
  Title		= {Analyse fonctionnelle, Th{\'e}orie et applications},
  Year		= {1983}
}

###Book{	  brezis-83,
  Author	= {Brezis, H.},
  Publisher	= {Masson},
  Title		= {Analyse fonctionnelle, Th{\'e}orie et applications},
  Year		= {1983}
}

@Article{	  brezzi-bristeau-franca-mallet-92,
  Author	= {Brezzi, F. and Bristeau, M.O. and Franca, L.P. and Mallet,
		  M. and Rog{\'e}, G.},
  Journal	= {Comp. Meth App. Mech. Eng.},
  Pages		= {117-129},
  Title		= {A relationship between stabilized finite element method
		  and the Galerkin method with bubble functions},
  Volume	= {96},
  Year		= {1992}
}

###Article{	  brezzi-bristeau-franca-mallet-92,
  Author	= {Brezzi, F. and Bristeau, M.O. and Franca, L.P. and Mallet,
		  M. and Rog{\'e}, G.},
  Journal	= {Comp. Meth App. Mech. Eng.},
  Pages		= {117-129},
  Title		= {A relationship between stabilized finite element method
		  and the Galerkin method with bubble functions},
  Volume	= {96},
  Year		= {1992}
}

@InProceedings{	  brezzi-marini-russo-96,
  Author	= {Brezzi, F. and Marini, D. and Russo, A.},
  BookTitle	= {Computational method in Applied sciences},
  Organization	= {ECCOMAS},
  Publisher	= {Wiley},
  Title		= {Pseudo residual-free bubbles and stabilized methods},
  Year		= {1996}
}

###InProceedings{ brezzi-marini-russo-96,
  Author	= {Brezzi, F. and Marini, D. and Russo, A.},
  BookTitle	= {Computational method in Applied sciences},
  Organization	= {ECCOMAS},
  Publisher	= {Wiley},
  Title		= {Pseudo residual-free bubbles and stabilized methods},
  Year		= {1996}
}

@InCollection{	  brezzi-pitkaranta-84,
  Author	= {Brezzi, F. and Pitk{\"a}ranta, J.},
  Title		= {On the stabilization of finite element approximations of
		  the {S}tokes equations},
  BookTitle	= {Efficient solutions of elliptic systems (Kiel, 1984)},
  Series	= {Notes Numer. Fluid Mech.},
  Volume	= {10},
  Pages		= {11--19},
  Publisher	= {Vieweg},
  Year		= {1984}
}

###InCollection{  brezzi-pitkaranta-84,
  Author	= {Brezzi, F. and Pitk{\"a}ranta, J.},
  Title		= {On the stabilization of finite element approximations of
		  the {S}tokes equations},
  BookTitle	= {Efficient solutions of elliptic systems (Kiel, 1984)},
  Series	= {Notes Numer. Fluid Mech.},
  Volume	= {10},
  Pages		= {11--19},
  Publisher	= {Vieweg},
  Year		= {1984}
}

@Article{	  brezzi-russo-94,
  Author	= {Brezzi, F. and Russo, A.},
  Journal	= {Math. Mod. Meth. Appl. Sci.},
  Pages		= {571-587},
  Title		= {Choosing bubbles for advection-diffusion problems},
  Volume	= {4},
  Year		= {1994}
}

###Article{	  brezzi-russo-94,
  Author	= {Brezzi, F. and Russo, A.},
  Journal	= {Math. Mod. Meth. Appl. Sci.},
  Pages		= {571-587},
  Title		= {Choosing bubbles for advection-diffusion problems},
  Volume	= {4},
  Year		= {1994}
}

@Article{	  brezzi1985two,
  Title		= {Two families of mixed finite elements for second order
		  elliptic problems},
  Author	= {Brezzi, Franco and Douglas Jr, Jim and Marini, L
		  Donatella},
  Journal	= {Numerische Mathematik},
  Volume	= {47},
  Number	= {2},
  Pages		= {217--235},
  Year		= {1985},
  Publisher	= {Springer}
}

@PhdThesis{	  briane-90,
  Author	= {Briane, M.},
  Note		= {th{\`e}se},
  School	= {Universit{\'e} Paris VI},
  Title		= {Homog{\'e}n{\'e}isation de mat{\'e}riaux fibr{\'e}s et
		  multi-couches},
  Year		= {1990}
}

###PhdThesis{	  briane-90,
  Author	= {Briane, M.},
  Note		= {th{\`e}se},
  School	= {Universit{\'e} Paris VI},
  Title		= {Homog{\'e}n{\'e}isation de mat{\'e}riaux fibr{\'e}s et
		  multi-couches},
  Year		= {1990}
}

@Article{	  briane-93,
  Author	= {Briane, M.},
  fjournal	= {RAIRO Mod{\'e}lisation Math{\'e}matique et Analyse
		  Num{\'e}rique},
  Journal	= {RAIRO Mod{\'e}l. Math. Anal. Num{\'e}r.},
  Number	= {6},
  Pages		= {759--775},
  Title		= {Three models of nonperiodic fibrous materials obtained by
		  homogenization},
  Volume	= {27},
  Year		= {1993}
}

###Article{	  briane-93,
  Author	= {Briane, M.},
  fjournal	= {RAIRO Mod{\'e}lisation Math{\'e}matique et Analyse
		  Num{\'e}rique},
  Journal	= {RAIRO Mod{\'e}l. Math. Anal. Num{\'e}r.},
  Number	= {6},
  Pages		= {759--775},
  Title		= {Three models of nonperiodic fibrous materials obtained by
		  homogenization},
  Volume	= {27},
  Year		= {1993}
}

@Article{	  briane-94,
  Author	= {Briane, M.},
  fjournal	= {Journal de Math{\'e}matiques Pures et Appliqu{\'e}es.
		  Neuvi{\`e}me S{\'e}rie},
  Journal	= {J. Math. Pures Appl. (9)},
  Number	= {1},
  Pages		= {47--66},
  Title		= {Homogenization of a nonperiodic material},
  Volume	= {73},
  Year		= {1994}
}

###Article{	  briane-94,
  Author	= {Briane, M.},
  fjournal	= {Journal de Math{\'e}matiques Pures et Appliqu{\'e}es.
		  Neuvi{\`e}me S{\'e}rie},
  Journal	= {J. Math. Pures Appl. (9)},
  Number	= {1},
  Pages		= {47--66},
  Title		= {Homogenization of a nonperiodic material},
  Volume	= {73},
  Year		= {1994}
}

@Article{	  brooks-hughes-82,
  Author	= {Brooks, A.N. and Hughes, T.J.R.},
  Journal	= {Comp. Meth. App. Mech. Eng.},
  Pages		= {199-259},
  Title		= {Streamline upwind/{Petrov-Galerkin} formulations for
		  convection dominated flows with particular emphasis on the
		  incompressible {Navier-Stokes} equations},
  Volume	= {32},
  Year		= {1982}
}

###Article{	  brooks-hughes-82,
  Author	= {Brooks, A.N. and Hughes, T.J.R.},
  Journal	= {Comp. Meth. App. Mech. Eng.},
  Pages		= {199-259},
  Title		= {Streamline upwind/{Petrov-Galerkin} formulations for
		  convection dominated flows with particular emphasis on the
		  incompressible {Navier-Stokes} equations},
  Volume	= {32},
  Year		= {1982}
}

@Article{	  brooks1982streamline,
  Title		= {Streamline upwind/{P}etrov-{G}alerkin formulations for
		  convection dominated flows with particular emphasis on the
		  incompressible {N}avier-{S}tokes equations},
  Author	= {Brooks, Alexander N and Hughes, Thomas JR},
  Journal	= {Computer methods in applied mechanics and engineering},
  Volume	= {32},
  Number	= {1},
  Pages		= {199--259},
  Year		= {1982},
  Publisher	= {Elsevier}
}

###Article{	  brooks1982streamline,
  Title		= {Streamline upwind/{P}etrov-{G}alerkin formulations for
		  convection dominated flows with particular emphasis on the
		  incompressible {N}avier-{S}tokes equations},
  Author	= {Brooks, Alexander N and Hughes, Thomas JR},
  Journal	= {Computer methods in applied mechanics and engineering},
  Volume	= {32},
  Number	= {1},
  Pages		= {199--259},
  Year		= {1982},
  Publisher	= {Elsevier}
}

@Article{	  brown-saad-94,
  Author	= {Brown, P. N. and Saad, Y.},
  fjournal	= {SIAM Journal on Optimization},
  Journal	= {SIAM J. Optim.},
  Number	= {2},
  Pages		= {297--330},
  Title		= {Convergence theory of nonlinear {N}ewton-{K}rylov
		  algorithms},
  Volume	= {4},
  Year		= {1994}
}

###Article{	  brown-saad-94,
  Author	= {Brown, P. N. and Saad, Y.},
  fjournal	= {SIAM Journal on Optimization},
  Journal	= {SIAM J. Optim.},
  Number	= {2},
  Pages		= {297--330},
  Title		= {Convergence theory of nonlinear {N}ewton-{K}rylov
		  algorithms},
  Volume	= {4},
  Year		= {1994}
}

@Book{		  brown_magnetic_2014,
  Location	= {{Hoboken, New Jersey}},
  Title		= {Magnetic {{Resonance Imaging}}: {{Physical Principles}}
		  and {{Sequence Design}}},
  Edition	= {Second edition},
  ISBN		= {978-0-471-72085-0},
  ShortTitle	= {Magnetic Resonance Imaging},
  PageTotal	= {944},
  Publisher	= {{John Wiley \& Sons, Inc}},
  Year		= {2014},
  Author	= {Brown, Robert W. and Cheng, Yu-Chung N. and Haacke, E.
		  Mark and Thompson, Michael R. and Venkatesan, Ramesh}
}

@Article{	  bruil-beugeling-feijen-van-aken-95,
  Annote	= {blood, filtration, porous},
  Author	= {Bruil, A. and Beugeling, T and Feijen, J. and van Aken, W.
		  G.},
  code		= {cel17},
  Journal	= {Transfusion Medicine Reviews},
  Number	= {2},
  Pages		= {145-166},
  Title		= {The mechanisms of leukocyte removal by filtration},
  Volume	= {9},
  Year		= {1995}
}

###Article{	  bruil-beugeling-feijen-van-aken-95,
  Annote	= {blood, filtration, porous},
  Author	= {Bruil, A. and Beugeling, T and Feijen, J. and van Aken, W.
		  G.},
  code		= {cel17},
  Journal	= {Transfusion Medicine Reviews},
  Number	= {2},
  Pages		= {145-166},
  Title		= {The mechanisms of leukocyte removal by filtration},
  Volume	= {9},
  Year		= {1995}
}

@Article{	  buenoorovio2008jtb,
  Title		= "Minimal model for human ventricular action potentials in
		  tissue ",
  Journal	= "Journal of Theoretical Biology ",
  Volume	= "253",
  Number	= "3",
  Pages		= "544 - 560",
  Year		= "2008",
  Note		= "",
  ISSN		= "0022-5193",
  DOI		= "http://dx.doi.org/10.1016/j.jtbi.2008.03.029",
  URL		= "http://www.sciencedirect.com/science/article/pii/S0022519308001690",
  Author	= "Alfonso Bueno-Orovio and Elizabeth M. Cherry and Flavio H.
		  Fenton",
  Keywords	= "Reentrant arrhythmias "
}

@PhdThesis{	  buffard-93,
  Author	= {T. Buffard},
  Month		= {d{\'e}cembre},
  School	= {universit{\'e} de Paris VI},
  Title		= {Analyse de quelques m{\'e}thodes de Volumes Finis non
		  structur{\'e}s pour la r{\'e}solution des {\'e}quations
		  d'Euler},
  Year		= {1993}
}

###PhdThesis{	  buffard-93,
  Author	= {T. Buffard},
  Month		= {d{\'e}cembre},
  School	= {universit{\'e} de Paris VI},
  Title		= {Analyse de quelques m{\'e}thodes de Volumes Finis non
		  structur{\'e}s pour la r{\'e}solution des {\'e}quations
		  d'Euler},
  Year		= {1993}
}

@Article{	  bull2013h,
  Title		= {Human non-contrast T1 values and correlation with
		  histology in diffuse fibrosis.},
  Author	= {Bull, Sacha and White, Steven K. and Piechnik, Stefan K.
		  and Flett, Andrew S. and Ferreira, Vanessa M. and Loudon,
		  Margaret and Francis, Jane M. and Karamitsos, Theodoros D.
		  and Prendergast, Bernard D. and Robson, Matthew D. and
		  Neubauer, Stefan and Moon, James C. and Myerson, Saul G.},
  Journal	= {Heart},
  Year		= {2013},
  Month		= {Jul},
  Number	= {13},
  Pages		= {932--937},
  Volume	= {99},
  Abstract	= {Aortic stenosis (AS) leads to diffuse fibrosis in the
		  myocardium, which is linked to adverse outcome. Myocardial
		  T1 values change with tissue composition.To test the
		  hypothesis that our recently developed non-contrast cardiac
		  magnetic resonance (CMR) T1 mapping sequence could identify
		  myocardial fibrosis without contrast agent.A prospective
		  CMR non-contrast T1 mapping study of 109 patients with
		  moderate and severe AS and 33 age- and gender-matched
		  controls.CMR at 1.5 T, including non-contrast T1 mapping
		  using a shortened modified Look-Locker inversion recovery
		  sequence, was carried out. Biopsy samples for histological
		  assessment of collagen volume fraction (CVF\%) were
		  obtained in 19 patients undergoing aortic valve
		  replacement.There was a significant correlation between T1
		  values and CVF\% (r=0.65, p=0.002). Mean T1 values were
		  significantly longer in all groups with severe AS (972 Â±
		  33 ms in severe asymptomatic, 1014 Â± 38 ms in severe
		  symptomatic) than in normal controls (944 Â± 16 ms)
		  (p<0.05). The strongest associations with T1 values were
		  for aortic valve area (r=-0.40, p=0.001) and left
		  ventricular mass index (LVMI) (r=0.36, p=0.008), and these
		  were the only independent predictors on multivariate
		  analysis.Non-contrast T1 values are increased in patients
		  with severe AS and further increase in symptomatic compared
		  with asymptomatic patients. T1 values lengthened with
		  greater LVMI and correlated with the degree of
		  biopsy-quantified fibrosis. This may provide a useful
		  clinical assessment of diffuse myocardial fibrosis in the
		  future.},
  DOI		= {10.1136/heartjnl-2012-303052},
  Institution	= {Department of Cardiovascular Medicine, University of
		  Oxford Centre for Clinical Magnetic Resonance Research,
		  John Radcliffe Hospital, Level 0, Headley Way, Oxford OX3
		  9DU, UK.},
  Keywords	= {Aged; Aged, 80 and over; Aortic Valve Stenosis,
		  diagnosis/metabolism/pathology; Aortic Valve,
		  chemistry/pathology; Asymptomatic Diseases; Biological
		  Markers, analysis; Biopsy; Case-Control Studies; Chi-Square
		  Distribution; Collagen, analysis; England; Female;
		  Fibrosis; Heart Ventricles, chemistry/pathology; Humans;
		  Magnetic Resonance Imaging; Male; Middle Aged; Multivariate
		  Analysis; Myocardium, chemistry/pathology; Predictive Value
		  of Tests; Prospective Studies; Severity of Illness Index},
  Language	= {eng},
  medline-pst	= {ppublish},
  owner		= {stoeckc},
  pii		= {heartjnl-2012-303052},
  pmid		= {23349348},
  timestamp	= {2015.07.24},
  URL		= {http://dx.doi.org/10.1136/heartjnl-2012-303052}
}

@Article{	  burchfield2013circ,
  Title		= {Pathological Ventricular Remodeling: Mechanisms: Part 1 of
		  2},
  Author	= {Burchfield, Jana S. and Xie, Min and Hill, Joseph A.},
  Journal	= {Circulation},
  Year		= {2013},
  Number	= {4},
  Pages		= {388-400},
  Volume	= {128},
  Abstract	= {Despite declines in heart failure morbidity and mortality
		  with current therapies, rehospitalization rates remain
		  distressingly high, substantially affecting individuals,
		  society, and the economy. As a result, the need for new
		  therapeutic advances and novel medical devices is urgent.
		  Disease-related left ventricular remodeling is a complex
		  process involving cardiac myocyte growth and death,
		  vascular rarefaction, fibrosis, inflammation, and
		  electrophysiological remodeling. Because these events are
		  highly interrelated, targeting a single molecule or process
		  may not be sufficient. Here, we review molecular and
		  cellular mechanisms governing pathological ventricular
		  remodeling.},
  DOI		= {10.1161/CIRCULATIONAHA.113.001878},
  EPrint	= {http://circ.ahajournals.org/content/128/4/388.full.pdf+html},
  File		= {burchfield13.pdf:burchfield13.pdf:PDF},
  timestamp	= {2015/09/20},
  URL		= {http://circ.ahajournals.org/content/128/4/388.abstract}
}

@Article{	  burman-fernandez-07,
  Author	= {Burman, E. and Fern{\'a}ndez, M.A.},
  Journal	= {C. R. Math. Acad. Sci. Paris},
  Number	= {8},
  Pages		= {467--472},
  Title		= {Stabilized explicit coupling for fluid-structure
		  interaction using {N}itsche's method},
  Volume	= {345},
  Year		= {2007}
}

###Article{	  burman-fernandez-07,
  Author	= {Burman, E. and Fern{\'a}ndez, M.A.},
  Journal	= {C. R. Math. Acad. Sci. Paris},
  Number	= {8},
  Pages		= {467--472},
  Title		= {Stabilized explicit coupling for fluid-structure
		  interaction using {N}itsche's method},
  Volume	= {345},
  Year		= {2007}
}

@Article{	  burman-fernandez-09,
  Author	= {Burman, E. and Fern\'andez, M.A.},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Number	= {5--8},
  Pages		= {766--784},
  Title		= {Stabilization of explicit coupling in fluid-structure
		  interaction involving fluid incompressibility},
  Volume	= {198},
  Year		= {2009}
}

###Article{	  burman-fernandez-09,
  Author	= {Burman, E. and Fern\'andez, M.A.},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Number	= {5--8},
  Pages		= {766--784},
  Title		= {Stabilization of explicit coupling in fluid-structure
		  interaction involving fluid incompressibility},
  Volume	= {198},
  Year		= {2009}
}

@Unpublished{	  burman-fernandez-xx,
  Author	= {Burman, E. and Fern\'andez, M.A.},
  Note		= {In preparation},
  Title		= {On the {N}itsche implicit/explicit coupling of
		  parabolic-hyperbolic systems}
}

###Unpublished{	  burman-fernandez-xx,
  Author	= {Burman, E. and Fern\'andez, M.A.},
  Note		= {In preparation},
  Title		= {On the {N}itsche implicit/explicit coupling of
		  parabolic-hyperbolic systems}
}

@Article{	  burmanhansbo07,
  Author	= {Burman, Erik and Hansbo, Peter},
  Title		= {A unified stabilized method for {S}tokes' and {D}arcy's
		  equations},
  Journal	= {J. Comput. Appl. Math.},
  fjournal	= {Journal of Computational and Applied Mathematics},
  Volume	= {198},
  Year		= {2007},
  Number	= {1},
  Pages		= {35--51},
  ISSN		= {0377-0427},
  coden		= {JCAMDI},
  mrclass	= {65M60 (35Q35 76M10 76S05)},
  mrnumber	= {MR2250387 (2007i:65076)},
  mrreviewer	= {Michael Fr{\"o}hner},
  DOI		= {10.1016/j.cam.2005.11.022}
}

###Article{	  burmanhansbo07,
  Author	= {Burman, Erik and Hansbo, Peter},
  Title		= {A unified stabilized method for {S}tokes' and {D}arcy's
		  equations},
  Journal	= {J. Comput. Appl. Math.},
  fjournal	= {Journal of Computational and Applied Mathematics},
  Volume	= {198},
  Year		= {2007},
  Number	= {1},
  Pages		= {35--51},
  ISSN		= {0377-0427},
  coden		= {JCAMDI},
  mrclass	= {65M60 (35Q35 76M10 76S05)},
  mrnumber	= {MR2250387 (2007i:65076)},
  mrreviewer	= {Michael Fr{\"o}hner},
  DOI		= {10.1016/j.cam.2005.11.022},
  URL		= {http://dx.doi.org/10.1016/j.cam.2005.11.022}
}

@Article{	  bz06,
  Author	= {Burman, E. and Zunino, P.},
  Journal	= {Siam Jour. Num. Anal.},
  Pages		= {1612--1638},
  Title		= {A domain decomposition method based on interior penalties
		  for advection--diffusion--reaction problems},
  Volume	= {44},
  Year		= {2006}
}

###Article{	  bz06,
  Author	= {Burman, E. and Zunino, P.},
  Journal	= {Siam Jour. Num. Anal.},
  Pages		= {1612--1638},
  Title		= {A domain decomposition method based on interior penalties
		  for advection--diffusion--reaction problems},
  Volume	= {44},
  Year		= {2006}
}

@Article{	  caballero_numerical_2015,
  langid	= {english},
  Title		= {Numerical Simulation of Non-{{Newtonian}} Blood Flow
		  Dynamics in Human Thoracic Aorta},
  Volume	= {18},
  ISSN		= {1025-5842, 1476-8259},
  URL		= {http://www.tandfonline.com/doi/abs/10.1080/10255842.2014.887698},
  DOI		= {10.1080/10255842.2014.887698},
  Number	= {11},
  JournalTitle	= {Computer Methods in Biomechanics and Biomedical
		  Engineering},
  URLDate	= {2019-02-13},
  Year		= {2015-08-18},
  Pages		= {1200-1216},
  Author	= {Caballero, A.D. and LaÃ­n, S.}
}

@InCollection{	  caiazzo2018mathematical,
  Title		= {Mathematical Modeling of Blood Flow in the Cardiovascular
		  System},
  Author	= {Caiazzo, A. and Vignon-Clementel, I.},
  BookTitle	= {Quantification of Biophysical Parameters in Medical
		  Imaging},
  Pages		= {45--70},
  Year		= {2018},
  Publisher	= {Springer}
}

@Article{	  caiazzo_assessment_2017,
  Title		= {Assessment of Reduced-Order Unscented {{Kalman}} Filter
		  for Parameter Identification in 1-Dimensional Blood Flow
		  Models Using Experimental Data},
  Volume	= {33},
  Number	= {8},
  JournalTitle	= {International journal for numerical methods in biomedical
		  engineering},
  Year		= {2017},
  Pages		= {e2843},
  Author	= {Caiazzo, A. and Caforio, Federica and Montecinos, Gino and
		  Muller, Lucas O. and Blanco, Pablo J. and Toro, Eluterio
		  F.}
}

@Report{	  caiazzo_projection_2010,
  Title		= {Projection Schemes for Fluid Flows through a Porous
		  Interface},
  Number	= {7725},
  Institution	= {{INRIA}},
  Type		= {Research Report},
  Date		= {2010},
  Author	= {Caiazzo, Alfonso and FernÃ¡ndez, Miguel A. and Gerbeau,
		  Jean-FrÃ©dÃ©ric and Martin, Vincent}
}

@Article{	  cairncross-schunk-baer-rao-sackinger-00,
  Author	= {Cairncross, R.A. and Schunk, P.R. and Baer, T.A. and Rao,
		  R. and Sackinger, P.A.},
  code		= {mob5},
  Journal	= {Int. Jour. Num. Meth. Fluids},
  Pages		= {375-403},
  Title		= {A finite element method for free surface flows of
		  incompressible fluids in three dimensions. {Part I}:
		  Boundary fitted mesh motion},
  Volume	= {33},
  Year		= {2000}
}

###Article{	  cairncross-schunk-baer-rao-sackinger-00,
  Author	= {Cairncross, R.A. and Schunk, P.R. and Baer, T.A. and Rao,
		  R. and Sackinger, P.A.},
  code		= {mob5},
  Journal	= {Int. Jour. Num. Meth. Fluids},
  Pages		= {375-403},
  Title		= {A finite element method for free surface flows of
		  incompressible fluids in three dimensions. {Part I}:
		  Boundary fitted mesh motion},
  Volume	= {33},
  Year		= {2000}
}

@Article{	  callot2003mrm,
  Title		= {In vivo study of microcirculation in canine myocardium
		  using the IVIM method},
  Author	= {Callot, Virginie and Bennett, Eric and Decking, Ulrich
		  K.M. and Balaban, Robert S. and Wen, Han},
  Journal	= {Magnetic Resonance in Medicine},
  Year		= {2003},
  Number	= {3},
  Pages		= {531--540},
  Volume	= {50},
  DOI		= {10.1002/mrm.10568},
  File		= {:Callot2003MRM.pdf:PDF},
  ISSN		= {1522-2594},
  Keywords	= {IVIM, heart},
  Publisher	= {Wiley-Blackwell},
  URL		= {http://dx.doi.org/10.1002/mrm.10568}
}

@Article{	  campbell_effect_2012,
  Title		= {Effect of Inlet Velocity Profiles on Patient-Specific
		  Computational Fluid Dynamics Simulations of the Carotid
		  Bifurcation},
  Volume	= {134},
  Number	= {5},
  JournalTitle	= {Journal of biomechanical engineering},
  Year		= {2012},
  Pages		= {051001},
  Author	= {Campbell, Ian C. and Ries, Jared and Dhawan, Saurabh S.
		  and Quyyumi, Arshed A. and Taylor, W. Robert and Oshinski,
		  John N.}
}

@Unpublished{	  cances-gerbeau-mikelic,
  Author	= {Canc{\`e}s, E. and Gerbeau, J-F. and Mikelic, A.},
  Note		= {en pr{\'e}paration}
}

###Unpublished{	  cances-gerbeau-mikelic,
  Author	= {Canc{\`e}s, E. and Gerbeau, J-F. and Mikelic, A.},
  Note		= {en pr{\'e}paration}
}

@Unpublished{	  cannone,
  Author	= {Cannone, M. and Planchon, F.},
  Note		= {submitted to {\it Diff. Int. Eq.}},
  Title		= {On the nonstationary {Navier-Stokes} equations with an
		  external force}
}

###Unpublished{	  cannone,
  Author	= {Cannone, M. and Planchon, F.},
  Note		= {submitted to {\it Diff. Int. Eq.}},
  Title		= {On the nonstationary {Navier-Stokes} equations with an
		  external force}
}

@Unpublished{	  cannone2,
  Author	= {Cannone, M. and Planchon, F.},
  Note		= {submitted to {\it Revista Matematica Iberoamericana}},
  Title		= {On the regularity of the bilinear terms for solutions to
		  the incompressible {Navier-Stokes} equations}
}

###Unpublished{	  cannone2,
  Author	= {Cannone, M. and Planchon, F.},
  Note		= {submitted to {\it Revista Matematica Iberoamericana}},
  Title		= {On the regularity of the bilinear terms for solutions to
		  the incompressible {Navier-Stokes} equations}
}

@Article{	  canstein_3d_2008,
  Title		= {{{3D MR}} Flow Analysis in Realistic Rapid-Prototyping
		  Model Systems of the Thoracic Aorta: Comparison with in
		  Vivo Data and Computational Fluid Dynamics in Identical
		  Vessel Geometries},
  ShortTitle	= {{{3D MR}} Flow Analysis in Realistic Rapid-Prototyping
		  Model Systems of the Thoracic Aorta},
  Author	= {Canstein, C. and Cachot, P. and Faust, A. and Stalder, A.
		  F. and Bock, J. and Frydrychowicz, A. and K{\"u}ffer, J.
		  and Hennig, J. and Markl, Michael},
  Year		= {2008},
  Volume	= {59},
  Pages		= {535--546},
  Journal	= {Magnetic Resonance in Medicine: An Official Journal of the
		  International Society for Magnetic Resonance in Medicine},
  Number	= {3}
}

@Unpublished{	  carmody-2005,
  Author	= {Carmody, C.J. and Burriesci, G. and Howard, I.C. and
		  Patterson, E.A.},
  Journal	= {Journal of Biomechanics},
  Title		= {An approach to the simulation of fluid-structure
		  interaction in the aortic valve},
  Year		= {2005}
}

###Unpublished{	  carmody-2005,
  Author	= {Carmody, C.J. and Burriesci, G. and Howard, I.C. and
		  Patterson, E.A.},
  Journal	= {Journal of Biomechanics},
  Title		= {An approach to the simulation of fluid-structure
		  interaction in the aortic valve},
  Year		= {2005}
}

@Article{	  carrillo-99,
  Author	= {Carrillo, J.},
  Journal	= {Arch. Rational Mech. Anal.},
  Pages		= {269-361},
  Volume	= {147},
  Year		= {1999}
}

###Article{	  carrillo-99,
  Author	= {Carrillo, J.},
  Journal	= {Arch. Rational Mech. Anal.},
  Pages		= {269-361},
  Volume	= {147},
  Year		= {1999}
}

@Article{	  carrillo2018optimal,
  Title		= {Optimal Dual-VENC Unwrapping in Phase-Contrast MRI},
  Author	= {Carrillo, Hugo and Osses, Axel and Uribe, Sergio and
		  Bertoglio, Crist{\'o}bal},
  Journal	= {IEEE transactions on medical imaging},
  Volume	= {38},
  Number	= {5},
  Pages		= {1263--1270},
  Year		= {2018},
  Publisher	= {IEEE}
}

@Article{	  carrillo_optimal_2018,
  Title		= {Optimal {{Dual}}-{{VENC}} ({{ODV}}) {{Unwrapping}} in
		  {{Phase}}-{{Contrast MRI}}},
  Author	= {Carrillo, Hugo and Osses, Axel and Uribe, Sergio and
		  Bertoglio, Crist{\'o}bal},
  Year		= {2018},
  Journal	= {IEEE transactions on medical imaging}
}

@Article{	  carrillo_optimal_2018-1,
  Title		= {Optimal {{Dual}}-{{VENC}} ({{ODV}}) {{Unwrapping}} in
		  {{Phase}}-{{Contrast MRI}}},
  ISSN		= {0278-0062},
  DOI		= {10.1109/TMI.2018.2882553},
  JournalTitle	= {IEEE Transactions on Medical Imaging},
  Date		= {2018},
  Pages		= {1-1},
  Author	= {Carrillo, H. and Osses, A. and Uribe, S. and Bertoglio,
		  C.}
}

@Article{	  carrive-le-tallec-mouro-95,
  Author	= {Carrive, M. and Le Tallec, P. and Mouro, J.},
  Journal	= {Revue Europ{\'e}enne des El{\'e}ments Finis},
  Number	= {5-6},
  Pages		= {633-662},
  Title		= {Approximation par El{\'e}ments Finis d'un mod{\`e}le de
		  coques minces g{\'e}om{\'e}triquement exact},
  Volume	= {4},
  Year		= {1995}
}

###Article{	  carrive-le-tallec-mouro-95,
  Author	= {Carrive, M. and Le Tallec, P. and Mouro, J.},
  Journal	= {Revue Europ{\'e}enne des El{\'e}ments Finis},
  Number	= {5-6},
  Pages		= {633-662},
  Title		= {Approximation par El{\'e}ments Finis d'un mod{\`e}le de
		  coques minces g{\'e}om{\'e}triquement exact},
  Volume	= {4},
  Year		= {1995}
}

@Article{	  casas_4d_2016,
  Title		= {{{4D}} Flow {{MRI}}-{{Based}} Pressure Loss Estimation in
		  Stenotic Flows: {{Evaluation}} Using Numerical
		  Simulations},
  Volume	= {75},
  ShortTitle	= {{{4D}} Flow {{MRI}}-{{Based}} Pressure Loss Estimation in
		  Stenotic Flows},
  Number	= {4},
  JournalTitle	= {Magnetic resonance in medicine},
  Year		= {2016},
  Pages		= {1808--1821},
  Author	= {Casas, Belen and Lantz, Jonas and Dyverfeldt, Petter and
		  Ebbers, Tino}
}

@InBook{	  caseau-62,
  Annote	= {mhd, flow},
  Author	= {Caseau, P.},
  code		= {mhd19},
  Pages		= {63-83},
  Publisher	= {Eyrolles},
  Series	= {Collection du Laboratoire National d'Hydraulique},
  Title		= {Ecoulements plans en magn{\'e}tohydrodynamique},
  Year		= {1962}
}

###InBook{	  caseau-62,
  Annote	= {mhd, flow},
  Author	= {Caseau, P.},
  code		= {mhd19},
  Pages		= {63-83},
  Publisher	= {Eyrolles},
  Series	= {Collection du Laboratoire National d'Hydraulique},
  Title		= {Ecoulements plans en magn{\'e}tohydrodynamique},
  Year		= {1962}
}

@InProceedings{	  castro-diaz-hecht-mohammadi-95,
  Author	= {Castro-Diaz, M.J. and Hecht, F. and Mohammadi, B.},
  BookTitle	= {Proc. of the 4th Int. meshing Roundtable, Albuquerque,
		  USA},
  Month		= {Oct.},
  Title		= {New progress in anisotropic grid adaptation for inviscid
		  and viscous flows simulations},
  Year		= {1995}
}

###InProceedings{ castro-diaz-hecht-mohammadi-95,
  Author	= {Castro-Diaz, M.J. and Hecht, F. and Mohammadi, B.},
  BookTitle	= {Proc. of the 4th Int. meshing Roundtable, Albuquerque,
		  USA},
  Month		= {Oct.},
  Title		= {New progress in anisotropic grid adaptation for inviscid
		  and viscous flows simulations},
  Year		= {1995}
}

@Unpublished{	  causin-gerbeau,
  Author	= {Causin, P. and Gerbeau, J-F.},
  Note		= {in preparation},
  Title		= {Parallel-in-time fluid-structure simulations}
}

###Unpublished{	  causin-gerbeau,
  Author	= {Causin, P. and Gerbeau, J-F.},
  Note		= {in preparation},
  Title		= {Parallel-in-time fluid-structure simulations}
}

@Article{	  causin-gerbeau-nobile-05,
  Author	= {Causin, P. and Gerbeau, J-F. and Nobile, F.},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Number	= {42--44},
  Pages		= {4506--4527},
  Title		= {Added-mass effect in the design of partitioned algorithms
		  for fluid-structure problems},
  Volume	= {194},
  Year		= {2005}
}

###Article{	  causin-gerbeau-nobile-05,
  Author	= {Causin, P. and Gerbeau, J-F. and Nobile, F.},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Number	= {42--44},
  Pages		= {4506--4527},
  Title		= {Added-mass effect in the design of partitioned algorithms
		  for fluid-structure problems},
  Volume	= {194},
  Year		= {2005}
}

@Article{	  causin2005added,
  Title		= {Added-mass effect in the design of partitioned algorithms
		  for fluid--structure problems},
  Author	= {Causin, P. and Gerbeau, J-F. and Nobile, F.},
  Journal	= {Computer methods in applied mechanics and engineering},
  Volume	= {194},
  Number	= {42-44},
  Pages		= {4506--4527},
  Year		= {2005},
  Publisher	= {Elsevier}
}

@Article{	  cavalcante-etal-11,
  Author	= {Cavalcante, J. and Lima, J. and Redheuil, A. and
		  Al-Mallah, M.},
  Title		= {Aortic stiffness: current understanding and future
		  directions},
  Journal	= {Journal of the American College of Cardiology},
  Volume	= {57},
  Year		= {2011},
  Number	= {14},
  Pages		= {1511-1522},
  pubmedid	= {},
  ISSN		= {0735-1097}
}

@Article{	  cayco_finite_1986,
  Title		= {Finite Element Technique for Optimal Pressure Recovery
		  from Stream Function Formulation of Viscous Flows},
  Volume	= {46},
  Number	= {174},
  JournalTitle	= {Mathematics of computation},
  Year		= {1986},
  Pages		= {371--377},
  Author	= {Cayco, M. E. and Nicolaides, R. A.}
}

@Article{	  cazeau-alonso-2004,
  Author	= {Cazeau, S. and Alonso, C. and Jauvert, G. and Lazarus, A.
		  and Ritter, P.},
  Journal	= {Europace},
  Pages		= {S42-S48},
  Title		= {Cardiac resynchronization therapy},
  Volume	= {5},
  Year		= {2004}
}

###Article{	  cazeau-alonso-2004,
  Author	= {Cazeau, S. and Alonso, C. and Jauvert, G. and Lazarus, A.
		  and Ritter, P.},
  Journal	= {Europace},
  Pages		= {S42-S48},
  Title		= {Cardiac resynchronization therapy},
  Volume	= {5},
  Year		= {2004}
}

###Article{	  cazeau-alonso-2004,
  Author	= {Cazeau, S. and Alonso, C. and Jauvert, G. and Lazarus, A.
		  and Ritter, P.},
  Journal	= {Europace},
  Pages		= {S42-S48},
  Title		= {Cardiac resynchronization therapy},
  Volume	= {5},
  Year		= {2004}
}

###Article{	  cazeau-alonso-2004,
  Author	= {Cazeau, S. and Alonso, C. and Jauvert, G. and Lazarus, A.
		  and Ritter, P.},
  Journal	= {Europace},
  Pages		= {S42-S48},
  Title		= {Cardiac resynchronization therapy},
  Volume	= {5},
  Year		= {2004}
}

@Article{	  cazeau-leclercq-lavergne-2001,
  Author	= {Cazeau, S. and Leclercq, C. and Lavergne, T. and et al.},
  Journal	= {The New England Journal of Medicine},
  Number	= {12},
  Title		= {Effects of multisite biventricular pacing in patients with
		  heart failure and intraventricular conduction delay},
  Volume	= {344},
  Year		= {2001}
}

###Article{	  cazeau-leclercq-lavergne-2001,
  Author	= {Cazeau, S. and Leclercq, C. and Lavergne, T. and et al.},
  Journal	= {The New England Journal of Medicine},
  Number	= {12},
  Title		= {Effects of multisite biventricular pacing in patients with
		  heart failure and intraventricular conduction delay},
  Volume	= {344},
  Year		= {2001}
}

###Article{	  cazeau-leclercq-lavergne-2001,
  Author	= {Cazeau, S. and Leclercq, C. and Lavergne, T. and et al.},
  Journal	= {The New England Journal of Medicine},
  Number	= {12},
  Title		= {Effects of multisite biventricular pacing in patients with
		  heart failure and intraventricular conduction delay},
  Volume	= {344},
  Year		= {2001}
}

###Article{	  cazeau-leclercq-lavergne-2001,
  Author	= {Cazeau, S. and Leclercq, C. and Lavergne, T. and et al.},
  Journal	= {The New England Journal of Medicine},
  Number	= {12},
  Title		= {Effects of multisite biventricular pacing in patients with
		  heart failure and intraventricular conduction delay},
  Volume	= {344},
  Year		= {2001}
}

@Article{	  cazeau-ritter-94,
  Author	= {Cazeau, S. and Ritter, P. and Bakdach, H. and et al.},
  Journal	= {Pacing Clin. Electrophysiol},
  Pages		= {1974-1979},
  Title		= {Four chamber pacing in dilated cardiomyopathy},
  Volume	= 17,
  Year		= 1994
}

###Article{	  cazeau-ritter-94,
  Author	= {Cazeau, S. and Ritter, P. and Bakdach, H. and et al.},
  Journal	= {Pacing Clin. Electrophysiol},
  Pages		= {1974-1979},
  Title		= {Four chamber pacing in dilated cardiomyopathy},
  Volume	= 17,
  Year		= 1994
}

@Article{	  cerqueira2002standardized,
  Title		= {Standardized myocardial segmentation and nomenclature for
		  tomographic imaging of the heart a statement for healthcare
		  professionals from the cardiac imaging committee of the
		  Council on Clinical Cardiology of the American Heart
		  Association},
  Author	= {Cerqueira, Manuel D and Weissman, Neil J and Dilsizian,
		  Vasken and Jacobs, Alice K and Kaul, Sanjiv and Laskey,
		  Warren K and Pennell, Dudley J and Rumberger, John A and
		  Ryan, Thomas and Verani, Mario S and others},
  Journal	= {Circulation},
  Volume	= {105},
  Number	= {4},
  Pages		= {539--542},
  Year		= {2002},
  Publisher	= {Am Heart Assoc}
}

@Article{	  chabiniok-etal-11,
  affiliation	= {INRIA, Rocquencourt, B.P. 105, 78153 Le Chesnay, France},
  Author	= {Chabiniok, R. and Moireau, P. and Lesault, P.-F. and
		  Rahmouni, A. and Deux, J.-F. and Chapelle, D.},
  ISSN		= {1617-7959},
  Journal	= {Biomechanics and Modeling in Mechanobiology},
  keyword	= {Physics and Astronomy},
  Note		= {10.1007/s10237-011-0337-8},
  Pages		= {1-22},
  Publisher	= {Springer Berlin / Heidelberg},
  Title		= {Estimation of tissue contractility from cardiac cine-MRI
		  using a biomechanical heart model},
  URL		= {http://dx.doi.org/10.1007/s10237-011-0337-8},
  Year		= {2011},
  bdsk-url-1	= {http://dx.doi.org/10.1007/s10237-011-0337-8}
}

@Article{	  chabiniok2011,
  affiliation	= {INRIA, Rocquencourt, B.P. 105, 78153 Le Chesnay, France},
  Author	= {Chabiniok, R. and Moireau, P. and Lesault, P.-F. and
		  Rahmouni, A. and Deux, J.-F. and Chapelle, D.},
  ISSN		= {1617-7959},
  Journal	= {Biomechanics and Modeling in Mechanobiology},
  keyword	= {Physics and Astronomy},
  Note		= {10.1007/s10237-011-0337-8},
  Pages		= {1-22},
  Publisher	= {Springer Berlin / Heidelberg},
  Title		= {Estimation of tissue contractility from cardiac cine-MRI
		  using a biomechanical heart model},
  Year		= {2011}
}

@Article{	  chabiniok2012bmmb,
  Title		= {Estimation of tissue contractility from cardiac cine-{MRI}
		  using a biomechanical heart model},
  Author	= {Chabiniok, R. and Moireau, P. and Lesault, P.-F. and
		  Rahmouni, A. and Deux, J.-F. and Chapelle, D.},
  Journal	= {Biomechanics and Modeling in Mechanobiology},
  Year		= {2012},
  Month		= {May},
  Number	= {5},
  Pages		= {609-630},
  Volume	= {11},
  DOI		= {10.1007/s10237-011-0337-8},
  File		= {:chabiniok12.pdf:PDF},
  Keywords	= {contractility, inverse problems, MRI},
  Publisher	= {Springer-Verlag},
  timestamp	= {2014/01/09}
}

@Article{	  chabiniok2016multiphysics,
  Title		= {Multiphysics and multiscale modelling, data--model fusion
		  and integration of organ physiology in the clinic:
		  ventricular cardiac mechanics},
  Author	= {Chabiniok, Radomir and Wang, Vicky Y and
		  Hadjicharalambous, Myrianthi and Asner, Liya and Lee, Jack
		  and Sermesant, Maxime and Kuhl, Ellen and Young, Alistair A
		  and Moireau, Philippe and Nash, Martyn P and others},
  Journal	= {Interface focus},
  Volume	= {6},
  Number	= {2},
  Pages		= {20150083},
  Year		= {2016},
  Publisher	= {Royal Society}
}

@Article{	  chabiniok_multiphysics_2016,
  Title		= {Multiphysics and Multiscale Modelling,
		  Data\textendash{}model Fusion and Integration of Organ
		  Physiology in the Clinic: Ventricular Cardiac Mechanics},
  Volume	= {6},
  ISSN		= {2042-8898},
  ShortTitle	= {Multiphysics and Multiscale Modelling,
		  Data\textendash{}model Fusion and Integration of Organ
		  Physiology in the Clinic},
  DOI		= {10.1098/rsfs.2015.0083},
  Abstract	= {With heart and cardiovascular diseases continually
		  challenging healthcare systems worldwide, translating basic
		  research on cardiac (patho)physiology into clinical care is
		  essential. Exacerbating this already extensive challenge is
		  the complexity of the heart, relying on its hierarchical
		  structure and function to maintain cardiovascular flow.
		  Computational modelling has been proposed and actively
		  pursued as a tool for accelerating research and
		  translation. Allowing exploration of the relationships
		  between physics, multiscale mechanisms and function,
		  computational modelling provides a platform for improving
		  our understanding of the heart. Further integration of
		  experimental and clinical data through data assimilation
		  and parameter estimation techniques is bringing
		  computational models closer to use in routine clinical
		  practice. This article reviews developments in
		  computational cardiac modelling and how their integration
		  with medical imaging data is providing new pathways for
		  translational cardiac modelling.},
  timestamp	= {2017-11-16T15:24:06Z},
  Number	= {2},
  URLDate	= {2017-11-16},
  Journal	= {Interface Focus},
  Author	= {Chabiniok, R. and Wang, V. and Hadjicharalambous, M. and
		  Asner, L. and Lee, J. and Sermesant, M. and Kuhl, E. and
		  Young, A. and Moireau, P. and Nash, M. and Chapelle, D. and
		  Nordsletten, D.},
  Month		= apr,
  Year		= {2016},
  File		= {PubMed Central Full Text
		  PDF:/home/hoermann/.zotero/zotero/krpbc0h6.default/zotero/storage/4ID84DD3/Chabiniok
		  et al. - 2016 - Multiphysics and multiscale modelling,
		  dataâmodel .pdf:application/pdf},
  pmid		= {27051509},
  pmcid		= {PMC4759748}
}

@Book{		  chapelle-bathe-03,
  Author	= {Chapelle, D. and Bathe, K.J.},
  Publisher	= {Springer Verlag},
  Title		= {The Finite Element Analysis of Shells - Fundamentals},
  Year		= {2003}
}

###Book{	  chapelle-bathe-03,
  Author	= {Chapelle, D. and Bathe, K.J.},
  Publisher	= {Springer Verlag},
  Title		= {The Finite Element Analysis of Shells - Fundamentals},
  Year		= {2003}
}

@TechReport{	  chapelle-cindea-buhan-moireau,
  Author	= {Chapelle, D. and C\^{\i}ndea, N. and de Buhan, M. and
		  Moireau, P.},
  date-added	= {2011-09-09 15:34:42 +0200},
  date-modified	= {2011-09-09 15:35:26 +0200},
  Institution	= {INRIA},
  Note		= {Submitted to CRAS Series I,
		  http://hal.inria.fr/inria-00619504/fr},
  Number	= {7728},
  Title		= {Exponential convergence of an observer based on partial
		  field measurements for the wave equation},
  Type		= {Research Report},
  Year		= {2011}
}

###TechReport{	  chapelle-cindea-buhan-moireau,
  Author	= {Chapelle, D. and C\^{\i}ndea, N. and de Buhan, M. and
		  Moireau, P.},
  date-added	= {2011-09-09 15:34:42 +0200},
  date-modified	= {2011-09-09 15:35:26 +0200},
  Institution	= {INRIA},
  Note		= {Submitted to CRAS Series I,
		  http://hal.inria.fr/inria-00619504/fr},
  Number	= {7728},
  Title		= {Exponential convergence of an observer based on partial
		  field measurements for the wave equation},
  Type		= {Research Report},
  Year		= {2011}
}

@Unpublished{	  chapelle-cindea-moireau,
  Author	= {Chapelle, D. and C\^{\i}ndea, N. and Moireau, P.},
  date-added	= {2011-09-09 15:38:25 +0200},
  date-modified	= {2011-09-09 15:39:57 +0200},
  Note		= {Submitted to M3AS},
  Title		= {Improving convergence in numerical analysis using
		  observers - The wave-like equation case}
}

###Unpublished{	  chapelle-cindea-moireau,
  Author	= {Chapelle, D. and C\^{\i}ndea, N. and Moireau, P.},
  date-added	= {2011-09-09 15:38:25 +0200},
  date-modified	= {2011-09-09 15:39:57 +0200},
  Note		= {Submitted to M3AS},
  Title		= {Improving convergence in numerical analysis using
		  observers - The wave-like equation case}
}

@InProceedings{	  chapelle-etal-09,
  Author	= {Chapelle, D. and Fern\'{a}ndez, M. A. and Gerbeau, J.-F.
		  and Moireau, P. and Sainte-Marie, J. and Zemzemi, N.},
  Title		= {Numerical Simulation of the Electromechanical Activity of
		  the Heart},
  BookTitle	= {Proceedings of the 5th International Conference on
		  Functional Imaging and Modeling of the Heart},
  Series	= {FIMH '09},
  Year		= {2009},
  ISBN		= {978-3-642-01931-9},
  Location	= {Nice, France},
  Pages		= {357--365},
  numpages	= {9},
  acmid		= {1560736},
  Publisher	= {Springer-Verlag},
  Address	= {Berlin, Heidelberg}
}

@Article{	  chapelle-moireau-letallec-09,
  Author	= {Chapelle, D. and Moireau, P. and Le Tallec, P.},
  date-added	= {2011-09-09 16:13:06 +0200},
  date-modified	= {2011-09-09 16:13:06 +0200},
  Journal	= {DCDS--A},
  Month		= {January/February},
  Note		= {A special issue Dedicated to Ta-Tsien Li on the Occasion
		  of his 70th Birthday},
  Number	= {1/2},
  Pages		= {65--84},
  read		= {Yes},
  Title		= {Robust filtering for joint state-parameter estimation in
		  distributed mechanical systems},
  Volume	= {23},
  Year		= {2009}
}

###Article{	  chapelle-moireau-letallec-09,
  Author	= {Chapelle, D. and Moireau, P. and Le Tallec, P.},
  date-added	= {2011-09-09 16:13:06 +0200},
  date-modified	= {2011-09-09 16:13:06 +0200},
  Journal	= {DCDS--A},
  Month		= {January/February},
  Note		= {A special issue Dedicated to Ta-Tsien Li on the Occasion
		  of his 70th Birthday},
  Number	= {1/2},
  Pages		= {65--84},
  read		= {Yes},
  Title		= {Robust filtering for joint state-parameter estimation in
		  distributed mechanical systems},
  Volume	= {23},
  Year		= {2009}
}

@Article{	  chapelle2009compmech,
  Title		= {A poroelastic model valid in large strains with
		  applications to perfusion in cardiac modeling},
  Author	= {Chapelle, D. and Gerbeau, J.-F. and Sainte-Marie, J. and
		  Vignon-Clementel, I. E.},
  Journal	= {Computational Mechanics},
  Year		= {2009},
  Month		= {Dec},
  Number	= {1},
  Pages		= {91--101},
  Volume	= {46},
  DOI		= {10.1007/s00466-009-0452-x},
  File		= {:Chapelle2009CompMech.pdf:PDF},
  ISSN		= {1432-0924},
  Keywords	= {Perfusion, FSI},
  Publisher	= {Springer Science + Business Media},
  URL		= {http://dx.doi.org/10.1007/s00466-009-0452-x}
}

@Article{	  chapelle2009robust,
  Title		= {Robust filtering for joint state parameter estimation for
		  distributed mechanical systems},
  Author	= {Chapelle, Dominique and Moireau, Philippe and Le Tallec,
		  Patrick},
  Journal	= {Discrete and Continuous Dynamical Systems-Series A},
  Volume	= {23},
  Number	= {1-2},
  Pages		= {65--84},
  Year		= {2009}
}

@Article{	  chapelle2012energy,
  Title		= {Energy-preserving muscle tissue model: formulation and
		  compatible discretizations},
  Author	= {Chapelle, Dominique and Le Tallec, Patrick and Moireau,
		  Philippe and Sorine, Michel},
  Journal	= {International Journal for Multiscale Computational
		  Engineering},
  Volume	= {10},
  Number	= {2},
  Year		= {2012},
  Publisher	= {Begel House Inc.}
}

@Article{	  chapelle2012ijmce,
  Title		= {An energy-preserving muscle tissue model: formulation and
		  compatible discretizations},
  Author	= {Chapelle, Dominique and Le Tallec, Patrick and Moireau,
		  Philippe and Sorine, Michel},
  Journal	= {International Journal for Multiscale Computational
		  Engineering},
  Year		= {2012},
  Number	= {2},
  Pages		= {189--211},
  Volume	= {10},
  DOI		= {10.1615/IntJMultCompEng.2011002360},
  File		= {:chapelle12.pdf:PDF},
  Publisher	= {Begel House Inc.},
  timestamp	= {2014/01/14}
}

@Article{	  chapelle2013dataassim,
  Title		= {Fundamental principles of data assimilation underlying the
		  Verdandi library: applications to biophysical model
		  personalization within euHeart},
  Author	= {Chapelle, Dominique and Fragu, Marc and Mallet, Vivien and
		  Moireau, Philippe},
  Journal	= {Medical \& biological engineering \& computing},
  Volume	= {51},
  Number	= {11},
  Pages		= {1221--1233},
  Year		= {2013},
  Publisher	= {Springer}
}

@Book{		  chavent-09,
  Author	= {Chavent, G.},
  Title		= {Nonlinear least squares for inverse problems},
  Series	= {Scientific Computation},
  Note		= {Theoretical foundations and step-by-step guide for
		  applications},
  Publisher	= {Springer},
  Address	= {New York},
  Year		= {2009},
  Pages		= {xiv+360},
  ISBN		= {978-90-481-2784-9},
  mrclass	= {65-02 (49N45 65N21 93E24)},
  mrnumber	= {2554448 (2011d:65001)},
  mrreviewer	= {Antonio C. G. Leit{\~a}o}
}

###Book{	  chavent-09,
  Author	= {Chavent, G.},
  Title		= {Nonlinear least squares for inverse problems},
  Series	= {Scientific Computation},
  Note		= {Theoretical foundations and step-by-step guide for
		  applications},
  Publisher	= {Springer},
  Address	= {New York},
  Year		= {2009},
  Pages		= {xiv+360},
  ISBN		= {978-90-481-2784-9},
  mrclass	= {65-02 (49N45 65N21 93E24)},
  mrnumber	= {2554448 (2011d:65001)},
  mrreviewer	= {Antonio C. G. Leit{\~a}o}
}

@Book{		  chavent-jaffre-86,
  Author	= { Chavent, G. and Jaffr{\AA}, J.},
  Publisher	= {North-Holland},
  Title		= { Mathematical models and finite elements for reservoir
		  simulation : single phase, multiphase and multicomponent
		  flows through porous media},
  Year		= {1986}
}

###Book{	  chavent-jaffre-86,
  Author	= { Chavent, G. and Jaffr{\AA}, J.},
  Publisher	= {North-Holland},
  Title		= { Mathematical models and finite elements for reservoir
		  simulation : single phase, multiphase and multicomponent
		  flows through porous media},
  Year		= {1986}
}

@Unpublished{	  chen-perthame,
  Author	= {Chen, G.Q. and Perthame, B.},
  Note		= {to appear in Ann. Inst. H. Poincar{\'e} (Anal. non
		  lin{\'e}aire)},
  Title		= {Well-Posedness for Non-Isotropic Degenerate
		  Parabolic-Hyperbolic Equation}
}

###Unpublished{	  chen-perthame,
  Author	= {Chen, G.Q. and Perthame, B.},
  Note		= {to appear in Ann. Inst. H. Poincar{\'e} (Anal. non
		  lin{\'e}aire)},
  Title		= {Well-Posedness for Non-Isotropic Degenerate
		  Parabolic-Hyperbolic Equation}
}

@Article{	  chen2003remodeling,
  Author	= {Chen, Junjie and Song, Sheng-Kwei and Liu, Wei and McLean,
		  Mark and Allen, J. Stacy and Tan, Jie and Wickline, Samuel
		  A. and Yu, Xin},
  Title		= {Remodeling of cardiac fiber structure after infarction in
		  rats quantified with diffusion tensor MRI},
  Journal	= {American Journal of Physiology - Heart and Circulatory
		  Physiology},
  Year		= {2003},
  Volume	= {285},
  Pages		= {H946--H954},
  Number	= {3},
  DOI		= {10.1152/ajpheart.00889.2002},
  ISBN		= {1522-1539},
  ISSN		= {0363-6135},
  Publisher	= {American Physiological Society}
}

@Article{	  chen2005ajphcp,
  Title		= {Regional ventricular wall thickening reflects changes in
		  cardiac fiber and sheet structure during contraction:
		  quantification with diffusion tensor MRI.},
  Author	= {Chen, Junjie and Liu, Wei and Zhang, Huiying and Lacy, Liz
		  and Yang, Xiaoxia and Song, Sheng-Kwei and Wickline, Samuel
		  A. and Yu, Xin},
  Journal	= {Am J Physiol Heart Circ Physiol},
  Year		= {2005},
  Month		= {Nov},
  Number	= {5},
  Pages		= {H1898--H1907},
  Volume	= {289},
  Abstract	= {Dynamic changes of myocardial fiber and sheet structure
		  are key determinants of regional ventricular function.
		  However, quantitative characterization of the
		  contraction-related changes in fiber and sheet structure
		  has not been reported. The objective of this study was to
		  quantify cardiac fiber and sheet structure at selected
		  phases of the cardiac cycle. Diffusion tensor MRI was
		  performed on isolated, perfused Sprague-Dawley rat hearts
		  arrested or fixed in three states as follows: 1) potassium
		  arrested (PA), which represents end diastole; 2)
		  barium-induced contracture with volume (BV+), which
		  represents isovolumic contraction or early systole; and 3)
		  barium-induced contracture without volume (BV-), which
		  represents end systole. Myocardial fiber orientations at
		  the base, midventricle, and apex were determined from the
		  primary eigenvectors of the diffusion tensor. Sheet
		  structure was determined from the secondary and tertiary
		  eigenvectors at the same locations. We observed that the
		  transmural distribution of the myofiber helix angle
		  remained unchanged as contraction proceeded from PA to BV+,
		  but endocardial and epicardial fibers became more
		  longitudinally orientated in the BV- group. Although sheet
		  structure exhibited significant regional variations,
		  changes in sheet structure during myocardial contraction
		  were relatively uniform across regions. The magnitude of
		  the sheet angle, which is an index of local sheet slope,
		  decreased by 23 and 44\% in BV+ and BV- groups,
		  respectively, which suggests more radial orientation of the
		  sheet. In summary, we have shown for the first time that
		  geometric changes in both sheet and fiber orientation
		  provide a substantial mechanism for radial wall thickening
		  independent of active components due to myofiber
		  shortening. Our results provide direct evidence that sheet
		  reorientation is a primary determinant of myocardial wall
		  thickening.},
  DOI		= {10.1152/ajpheart.00041.2005},
  Institution	= {Cardiovascular Magnetic Resonance Laboratories, Department
		  of Medicine, Washington University, St Louis, Missouri,
		  USA.},
  Keywords	= {Animals; Barium Compounds, pharmacology; Chlorides,
		  pharmacology; Data Interpretation, Statistical; Diffusion
		  Magnetic Resonance Imaging; Heart Ventricles, anatomy /&/
		  histology; Heart, anatomy /&/ histology/physiology; In
		  Vitro Techniques; Muscle Fibers, Skeletal, physiology;
		  Myocardial Contraction, drug effects/physiology; Potassium
		  Chloride, pharmacology; Rats; Rats, Sprague-Dawley;
		  Systole; Ventricular Function},
  Language	= {eng},
  medline-pst	= {ppublish},
  owner		= {stoeckc},
  pii		= {289/5/H1898},
  pmid		= {16219812},
  timestamp	= {2015.07.24},
  URL		= {http://dx.doi.org/10.1152/ajpheart.00041.2005}
}

@Article{	  cheng_assessment_2016,
  langid	= {english},
  Title		= {Assessment of {{Hemodynamic Conditions}} in the {{Aorta
		  Following Root Replacement}} with {{Composite
		  Valve}}-{{Conduit Graft}}},
  Volume	= {44},
  ISSN		= {1573-9686},
  URL		= {https://doi.org/10.1007/s10439-015-1453-x},
  DOI		= {10.1007/s10439-015-1453-x},
  Abstract	= {This paper presents the analysis of detailed hemodynamics
		  in the aortas of four patients following replacement with a
		  composite bio-prosthetic valve-conduit. Magnetic resonance
		  image-based computational models were set up for each
		  patient with boundary conditions comprising
		  subject-specific three-dimensional inflow velocity profiles
		  at the aortic root and central pressure waveform at the
		  model outlet. Two normal subjects were also included for
		  comparison. The purpose of the study was to investigate the
		  effects of the valve-conduit on flow in the proximal and
		  distal aorta. The results suggested that following the
		  composite valve-conduit implantation, the vortical flow
		  structure and hemodynamic parameters in the aorta were
		  altered, with slightly reduced helical flow index, elevated
		  wall shear stress and higher non-uniformity in wall shear
		  compared to normal aortas. Inter-individual analysis
		  revealed different hemodynamic conditions among the
		  patients depending on the conduit configuration in the
		  ascending aorta, which is a key factor in determining
		  post-operative aortic flow. Introducing a natural curvature
		  in the conduit to create a smooth transition between the
		  conduit and native aorta may help prevent the occurrence of
		  retrograde and recirculating flow in the aortic arch, which
		  is particularly important when a large portion or the
		  entire ascending aorta needs to be replaced.},
  Number	= {5},
  JournalTitle	= {Annals of Biomedical Engineering},
  ShortJournal	= {Ann Biomed Eng},
  URLDate	= {2019-03-09},
  Year		= {2016-05-01},
  Pages		= {1392-1404},
  Author	= {Cheng, Zhuo and Kidher, Emaddin and Jarral, Omar A. and
		  OâRegan, Declan P. and Wood, Nigel B. and Athanasiou,
		  Thanos and Xu, Xiao Yun}
}

@Article{	  cheng_formula_2008,
  Title		= {Formula for the Viscosity of a Glycerol- Water Mixture},
  Author	= {Cheng, Nian-Sheng},
  Year		= {2008},
  Volume	= {47},
  Pages		= {3285--3288},
  Journal	= {Industrial \& engineering chemistry research},
  Number	= {9}
}

@Article{	  chien-80,
  Annote	= {blood, aggregation, red cell},
  Author	= {Chien, S.},
  code		= {cel5},
  Journal	= {Adv. Chem. Ser.},
  Pages		= {3-38},
  Title		= {Aggregation of red blood cells: an electrochemical and
		  colloid chemical problem},
  Year		= {1980}
}

###Article{	  chien-80,
  Annote	= {blood, aggregation, red cell},
  Author	= {Chien, S.},
  code		= {cel5},
  Journal	= {Adv. Chem. Ser.},
  Pages		= {3-38},
  Title		= {Aggregation of red blood cells: an electrochemical and
		  colloid chemical problem},
  Year		= {1980}
}

@Article{	  chien-jan-73,
  Annote	= {blood, red cell, aggregation},
  Author	= {Chien, S. and Jan, K.M.},
  code		= {cel4},
  Journal	= {J. Supramolecular Structure},
  Pages		= {385-409},
  Title		= {Red cell aggregation by macromolecules. Roles of surface
		  adsorption and electrostatic repulsion},
  Volume	= {1},
  Year		= {1975}
}

###Article{	  chien-jan-73,
  Annote	= {blood, red cell, aggregation},
  Author	= {Chien, S. and Jan, K.M.},
  code		= {cel4},
  Journal	= {J. Supramolecular Structure},
  Pages		= {385-409},
  Title		= {Red cell aggregation by macromolecules. Roles of surface
		  adsorption and electrostatic repulsion},
  Volume	= {1},
  Year		= {1975}
}

@Article{	  cho_effects_1991,
  langid	= {english},
  Title		= {Effects of the Non-{{Newtonian}} Viscosity of Blood on
		  Flows in a Diseased Arterial Vessel. {{Part}} 1: {{Steady}}
		  Flows},
  Volume	= {28},
  ISSN		= {18785034, 0006355X},
  URL		= {http://www.medra.org/servlet/aliasResolver?alias=iospress&doi=10.3233/BIR-1991-283-415},
  DOI		= {10.3233/BIR-1991-283-415},
  ShortTitle	= {Effects of the Non-{{Newtonian}} Viscosity of Blood on
		  Flows in a Diseased Arterial Vessel. {{Part}} 1},
  Abstract	= {Effectsof the non-Newtonian viscosity of blood on a flow
		  in a coronary arterial castingof man were studied
		  numerically using a finite element method. Various
		  constitutive models were examined to model the
		  non-Newtonian viscosity of blood and their model constants
		  were sunrmarized. A method to incorporatethe non-Newtonian
		  vixosity of blood was introduced so that the viscosity
		  could be calculatedlocally. The Pressuredrop, wall shear
		  stressand velocity profiles for the caseof blood virosity
		  were comParedfor the caseof Newtonian viscoiity
		  (0.0.115poise). The effect of the non-Newtonian viscosity
		  of blood on \_ the overall pressrrri drop acrossthe
		  arterial casting was found to be significant at a flow of
		  the Reynoldsnumber of100 or less. Also in the region of
		  flow separationor recirculation, the non-Newtonian
		  viscosity of blood yields larger wall shear stressthan the
		  Newtonian case. The origin of the non-Newtonian viscosity
		  of blood was dixussed in relation to the viscoelasticity
		  and yield stressof blood.},
  Number	= {3-4},
  JournalTitle	= {Biorheology},
  URLDate	= {2019-02-13},
  Year		= {1991-06-01},
  Pages		= {241-262},
  Author	= {Cho, Young I. and Kensey, Kenneth R.}
}

@Article{	  chorin-68,
  Author	= {Chorin, A.J.},
  Journal	= {Math. Comp.},
  Pages		= {745--762},
  Title		= {Numerical solution of the {N}avier-{S}tokes equations},
  Volume	= {22},
  Year		= {1968}
}

###Article{	  chorin-68,
  Author	= {Chorin, A.J.},
  Journal	= {Math. Comp.},
  Pages		= {745--762},
  Title		= {Numerical solution of the {N}avier-{S}tokes equations},
  Volume	= {22},
  Year		= {1968}
}

@Article{	  chorin-69,
  Author	= {Chorin, A.J.},
  Journal	= {Math. Comp.},
  Pages		= {341--353},
  Title		= {On the convergence of discrete approximations to the
		  {N}avier-{S}tokes equations},
  Volume	= {23},
  Year		= {1969}
}

###Article{	  chorin-69,
  Author	= {Chorin, A.J.},
  Journal	= {Math. Comp.},
  Pages		= {341--353},
  Title		= {On the convergence of discrete approximations to the
		  {N}avier-{S}tokes equations},
  Volume	= {23},
  Year		= {1969}
}

@Article{	  chorin1968mathcomp,
  Title		= {Numerical solution of the {N}avier-{S}tokes equations},
  Author	= {Chorin, A.J.},
  Journal	= {Mathematics of Computation},
  Year		= {1968},
  Pages		= {745--762},
  Volume	= {22},
  Keywords	= {Navier-Stokes}
}

@Article{	  chorin1969mathcomp,
  Title		= {On the convergence of discrete approximations to the
		  {N}avier-{S}tokes equations},
  Author	= {Chorin, A.J.},
  Journal	= {Mathematics of Computation},
  Year		= {1969},
  Pages		= {341--353},
  Volume	= {23},
  Keywords	= {Navier-Stokes}
}

@Article{	  chorin68,
  Author	= "Chorin, A.~J.",
  Title		= "{Numerical solution of the Navier-Stokes equations}",
  Journal	= {Math. Comp.},
  fjournal	= {Mathematics of Computation},
  Volume	= "22",
  Pages		= "745--762",
  Year		= "1968"
}

###Article{	  chorin68,
  Author	= "Chorin, A.~J.",
  Title		= "{Numerical solution of the Navier-Stokes equations}",
  Journal	= {Math. Comp.},
  fjournal	= {Mathematics of Computation},
  Volume	= "22",
  Pages		= "745--762",
  Year		= "1968"
}

@Article{	  chorin69,
  Author	= "Chorin, A.~J.",
  Title		= "{On the convergence of discrete approximations of the
		  Navier-Stokes equations}",
  Journal	= {Math. Comp.},
  fjournal	= {Mathematics of Computation},
  Volume	= "23",
  Pages		= "341--353",
  Year		= "1969"
}

###Article{	  chorin69,
  Author	= "Chorin, A.~J.",
  Title		= "{On the convergence of discrete approximations of the
		  Navier-Stokes equations}",
  Journal	= {Math. Comp.},
  fjournal	= {Mathematics of Computation},
  Volume	= "23",
  Pages		= "341--353",
  Year		= "1969"
}

@Book{		  ciarlet,
  Editor	= {Ciarlet, P.G. and Lions, J.-L.},
  Publisher	= {North-Holland},
  Title		= {Handbook of Numerical Analysis, Vol. 2, Finite Element
		  Methods (Part 1)},
  Year		= {1991}
}

###Book{	  ciarlet,
  Editor	= {Ciarlet, P.G. and Lions, J.-L.},
  Publisher	= {North-Holland},
  Title		= {Handbook of Numerical Analysis, Vol. 2, Finite Element
		  Methods (Part 1)},
  Year		= {1991}
}

@Book{		  ciarlet-02,
  Author	= {Ciarlet, P.~G.},
  Title		= {The finite element method for elliptic problems},
  Series	= {Classics in Applied Mathematics},
  Volume	= {40},
  Publisher	= {Society for Industrial and Applied Mathematics (SIAM)},
  Address	= {Philadelphia, PA},
  Year		= {2002}
}

###Book{	  ciarlet-02,
  Author	= {Ciarlet, P.~G.},
  Title		= {The finite element method for elliptic problems},
  Series	= {Classics in Applied Mathematics},
  Volume	= {40},
  Note		= {Reprint of the 1978 original [North-Holland, Amsterdam;
		  MR0520174 (58 \#25001)]},
  Publisher	= {Society for Industrial and Applied Mathematics (SIAM)},
  Address	= {Philadelphia, PA},
  Year		= {2002}
}

@Book{		  ciarlet-88,
  Address	= {Amsterdam},
  Author	= {Ciarlet, P.G.},
  Publisher	= {North-Holland Publishing Co.},
  Series	= {Studies in Mathematics and its Applications},
  Title		= {Mathematical elasticity. {V}ol. {I}},
  Volume	= {20},
  Year		= {1988}
}

###Book{	  ciarlet-88,
  Address	= {Amsterdam},
  Author	= {Ciarlet, P.G.},
  Publisher	= {North-Holland Publishing Co.},
  Series	= {Studies in Mathematics and its Applications},
  Title		= {Mathematical elasticity. {V}ol. {I}},
  Volume	= {20},
  Year		= {1988}
}

@InProceedings{	  cimrman-rohan-2003,
  Author	= {Cimrman, R. and Rohan, E.},
  BookTitle	= {Computational Fluid and Solid Mechanics},
  Editor	= {K.J. Bathe},
  Publisher	= {Elsevier},
  Title		= {Modelling heart tissue using a composite muscle model with
		  blood perfusion},
  Year		= {2003}
}

###InProceedings{ cimrman-rohan-2003,
  Author	= {Cimrman, R. and Rohan, E.},
  BookTitle	= {Computational Fluid and Solid Mechanics},
  Editor	= {K.J. Bathe},
  Publisher	= {Elsevier},
  Title		= {Modelling heart tissue using a composite muscle model with
		  blood perfusion},
  Year		= {2003}
}

###InProceedings{ cimrman-rohan-2003,
  Author	= {Cimrman, R. and Rohan, E.},
  BookTitle	= {Computational Fluid and Solid Mechanics},
  Editor	= {K.J. Bathe},
  Publisher	= {Elsevier},
  Title		= {Modelling heart tissue using a composite muscle model with
		  blood perfusion},
  Year		= {2003}
}

###InProceedings{ cimrman-rohan-2003,
  Author	= {Cimrman, R. and Rohan, E.},
  BookTitle	= {Computational Fluid and Solid Mechanics},
  Editor	= {K.J. Bathe},
  Publisher	= {Elsevier},
  Title		= {Modelling heart tissue using a composite muscle model with
		  blood perfusion},
  Year		= {2003}
}

@Article{	  cioffi2011prognostic,
  Title		= {Prognostic effect of inappropriately high left ventricular
		  mass in asymptomatic severe aortic stenosis},
  Author	= {Cioffi, Giovanni and Faggiano, Pompilio and Vizzardi,
		  Enrico and Tarantini, Luigi and Cramariuc, Dana and Gerdts,
		  Eva and De Simone, Giovanni},
  Journal	= {Heart},
  Volume	= {97},
  Number	= {4},
  Pages		= {301--307},
  Year		= {2011},
  Publisher	= {BMJ Publishing Group Ltd and British Cardiovascular
		  Society}
}

@Article{	  cioffi_prognostic_2011,
  Title		= {Prognostic Effect of Inappropriately High Left Ventricular
		  Mass in Asymptomatic Severe Aortic Stenosis},
  Volume	= {97},
  Number	= {4},
  JournalTitle	= {Heart},
  Year		= {2011},
  Pages		= {301--307},
  Author	= {Cioffi, Giovanni and Faggiano, Pompilio and Vizzardi,
		  Enrico and Tarantini, Luigi and Cramariuc, Dana and Gerdts,
		  Eva and de Simone, Giovanni},
  Options	= {useprefix=true}
}

@Book{		  circulationheartwiki,
  Title		= {{Circulatory system}},
  Author	= {{Wikipedia Encyclopedia}},
  Year		= {2011}
}

###Book{	  circulationheartwiki,
  Title		= {{Circulatory system}},
  Author	= {{Wikipedia Encyclopedia}},
  Address	= {\url{http://en.wikipedia.org/wiki/Circulatory_system}},
  Year		= {2011}
}

@InProceedings{	  cito_sensitivity_2014,
  langid	= {english},
  Title		= {Sensitivity {{Analysis}} of the {{Boundary Conditions}} in
		  {{Simulations}} of the {{Flow}} in an {{Aortic
		  Coarctation}} under {{Rest}} and {{Stress Conditions}}},
  ISBN		= {978-3-642-54268-8},
  Abstract	= {Aortic coarctation is a congenital condition in which the
		  aorta is narrowed. The pressure drop through the aorta
		  depends on the extension of this narrowing. Therefore,
		  severe coarctations have important side-effects on the
		  hemodynamic conditions of the circulatory system. The
		  Computational Fluid Dynamics (CFD) simulation of the
		  hemodynamics in a patient specific aortic coarctation can
		  help to predict the pressure drop produced by the aorta
		  narrowing. Nevertheless, an accurate prediction of the
		  pressure drop, by means of CFD tools, depends strongly on
		  the boundary conditions (BCs). In this study we present the
		  results of ten simulations performed on a patient specific
		  aortic coarctation vasculature proposed in the second
		  MICCAI-STACOM CFD Challenge. The model includes ascending
		  aorta, arch, descending aorta, and upper branch vessels.
		  Specifically, we consider; two different physiological
		  states a) rest and b) stress condition. For both cases the
		  flow rate waveforms are provided at the ascending aorta and
		  descending aorta. The ten simulations are performed using
		  five different set of boundary conditions. The results are
		  reported and indications on the more accurate boundary
		  conditions are discussed.},
  BookTitle	= {Statistical {{Atlases}} and {{Computational Models}} of
		  the {{Heart}}. {{Imaging}} and {{Modelling Challenges}}},
  Series	= {Lecture {{Notes}} in {{Computer Science}}},
  Publisher	= {{Springer Berlin Heidelberg}},
  Year		= {2014},
  Pages		= {74-82},
  Author	= {Cito, Salvatore and PallarÃ©s, Jordi and Vernet, Anton},
  Editor	= {Camara, Oscar and Mansi, Tommaso and Pop, Mihaela and
		  Rhode, Kawal and Sermesant, Maxime and Young, Alistair}
}

@Article{	  clague-phillips-97,
  Annote	= {brinkman},
  Author	= {Clague, D. S. and Phillips, R. J.},
  code		= {por3},
  Journal	= {Phys. Fluid},
  Number	= {6},
  Pages		= {1562-1572},
  Title		= {A numerical calculation of the hydraulic permeability of
		  the three-dimensional disordered fibrous media},
  Volume	= {9},
  Year		= {1997}
}

###Article{	  clague-phillips-97,
  Annote	= {brinkman},
  Author	= {Clague, D. S. and Phillips, R. J.},
  code		= {por3},
  Journal	= {Phys. Fluid},
  Number	= {6},
  Pages		= {1562-1572},
  Title		= {A numerical calculation of the hydraulic permeability of
		  the three-dimensional disordered fibrous media},
  Volume	= {9},
  Year		= {1997}
}

@Article{	  clark-1976-1,
  Author	= {Clark, C.},
  Journal	= {J. Biomech.},
  Pages		= {521-528},
  Title		= {The fluid mechanics of the aortic stenosis - {I. Theory}
		  and steady flow experiments},
  Volume	= {9},
  Year		= {1976}
}

###Article{	  clark-1976-1,
  Author	= {Clark, C.},
  Journal	= {J. Biomech.},
  Pages		= {521-528},
  Title		= {The fluid mechanics of the aortic stenosis - {I. Theory}
		  and steady flow experiments},
  Volume	= {9},
  Year		= {1976}
}

@Article{	  clark-1976-2,
  Author	= {Clark, C.},
  Journal	= {J. Biomech.},
  Pages		= {567-573},
  Title		= {The fluid mechanics of the aortic stenosis - {II.
		  Unsteady} flow experiments},
  Volume	= {9},
  Year		= {1976}
}

###Article{	  clark-1976-2,
  Author	= {Clark, C.},
  Journal	= {J. Biomech.},
  Pages		= {567-573},
  Title		= {The fluid mechanics of the aortic stenosis - {II.
		  Unsteady} flow experiments},
  Volume	= {9},
  Year		= {1976}
}

@Article{	  clark_energy_1979,
  Title		= {Energy Losses in Flow through Stenosed Valves},
  Author	= {Clark, C.},
  Year		= {1979},
  Volume	= {12},
  Pages		= {737--746},
  Journal	= {Journal of biomechanics},
  Number	= {10}
}

@Article{	  clayton2011review,
  Title		= {Models of cardiac tissue electrophysiology: progress,
		  challenges and open questions},
  Author	= {Clayton, RH and Bernus, Olivier and Cherry, EM and
		  Dierckx, Hans and Fenton, FH and Mirabella, L and Panfilov,
		  AV and Sachse, FB and Seemann, G and Zhang, H},
  Journal	= {Progress in biophysics and molecular biology},
  Volume	= {104},
  Number	= {1},
  Pages		= {22--48},
  Year		= {2011},
  Publisher	= {Elsevier}
}

@Article{	  clement75,
  Author	= {Cl{\'e}ment, Ph.},
  Journal	= {Rev. Fran{\c c}aise Automat. Informat. Recherche
		  Op{\'e}rationnelle S{\'e}r. RAIRO Analyse Num{\'e}rique},
  Number	= {R-2},
  Pages		= {77--84},
  Title		= {Approximation by finite element functions using local
		  regularization},
  Volume	= {9},
  Year		= {1975}
}

###Article{	  clement75,
  Author	= {Cl{\'e}ment, Ph.},
  Journal	= {Rev. Fran{\c c}aise Automat. Informat. Recherche
		  Op{\'e}rationnelle S{\'e}r. RAIRO Analyse Num{\'e}rique},
  Number	= {R-2},
  Pages		= {77--84},
  Title		= {Approximation by finite element functions using local
		  regularization},
  Volume	= {9},
  Year		= {1975}
}

@Article{	  coffey2015modern,
  Title		= {The modern epidemiology of heart valve disease},
  Author	= {Coffey, S. and Cairns, B. and Iung, B.},
  Journal	= {Heart},
  Year		= {2015},
  Publisher	= {BMJ Publishing Group Ltd and British Cardiovascular
		  Society}
}

@Article{	  cohen2000circ,
  Title		= {Favorable Remodeling Enhances Recovery of Regional
		  Myocardial Function in the Weeks After Infarction in
		  Ischemically Preconditioned Hearts},
  Author	= {Cohen, Michael V. and Yang, Xi-Ming and Neumann, Till and
		  Heusch, Gerd and Downey, James M.},
  Journal	= {Circulation},
  Year		= {2000},
  Number	= {5},
  Pages		= {579-583},
  Volume	= {102},
  Abstract	= {Background?In a previous study, we found that recovery of
		  segment shortening in the ischemic zone of conscious,
		  chronically instrumented rabbits was significantly better
		  in ischemically preconditioned than control animals after
		  72 hours of reperfusion. However, although this period of
		  reperfusion was felt to be sufficient to allow recovery
		  from stunning, regional function was disproportionately low
		  for the size of the infarcts.Methods and Results?To further
		  characterize the recovery of left ventricular regional
		  function, rabbits were chronically instrumented with a
		  balloon occluder around a branch of the left coronary
		  artery and a pair of ultrasonic crystals to monitor segment
		  shortening in the ischemic zone. The preconditioned group
		  had 1 cycle of 5-minute occlusion/10-minute reperfusion
		  before a 30-minute occlusion, whereas control rabbits
		  experienced only the 30-minute occlusion. All monitored
		  segments were either dyskinetic or akinetic during the
		  30-minute occlusion. There was no difference in function
		  between the 2 groups until 24 hours of reperfusion. At 72
		  hours, systolic shortening in control hearts averaged only
		  5% of the preischemic value, whereas shortening was 29% of
		  baseline in preconditioned hearts. By day 21, systolic
		  shortening averaged 26% in control hearts and 65% in
		  preconditioned hearts (P<0.02) and appeared to have reached
		  a plateau. Infarct size was 31.4Â±2.8% and 15.5Â±2.1% in
		  control and preconditioned hearts, respectively. Moreover,
		  in ischemically preconditioned hearts, the recovery of
		  regional function was better than in controls for any given
		  amount of microinfarction in the myocardial segment between
		  crystals (P=0.02).Conclusions?The progressive improvement
		  in preconditioned hearts is most consistent with favorable
		  remodeling in the ischemic zone, which the preconditioning
		  process seems to accentuate.},
  DOI		= {10.1161/01.CIR.102.5.579},
  EPrint	= {http://circ.ahajournals.org/content/102/5/579.full.pdf+html},
  File		= {cohen00.pdf:cohen00.pdf:PDF},
  timestamp	= {2015/09/17},
  URL		= {http://circ.ahajournals.org/content/102/5/579.abstract}
}

@Article{	  cohn00jacc,
  Title		= {Cardiac remodeling -- concepts and clinical implications:
		  a consensus paper from an international forum on cardiac
		  remodeling},
  Author	= {Cohn, Jay N and Ferrari, Roberto and Sharpe, Norman},
  Journal	= {Journal of the American College of Cardiology},
  Year		= {2000},
  Number	= {3},
  Pages		= {569--582},
  Volume	= {35},
  File		= {:cohn00.pdf:PDF},
  Publisher	= {Am Coll Cardio Found},
  timestamp	= {2014/11/27}
}

@Book{		  constantin,
  Author	= {Constantin, P. and Foias, C. and Nicolaenko, B. and Temam,
		  R.},
  Publisher	= {Springer-Verlag},
  Title		= {Integral manifolds and inertial manifolds for dissipative
		  partial differential equations},
  Year		= {1989}
}

###Book{	  constantin,
  Author	= {Constantin, P. and Foias, C. and Nicolaenko, B. and Temam,
		  R.},
  Publisher	= {Springer-Verlag},
  Title		= {Integral manifolds and inertial manifolds for dissipative
		  partial differential equations},
  Year		= {1989}
}

@Article{	  constantino2013hcp,
  Title		= {Mechanistic insight into prolonged electromechanical delay
		  in dyssynchronous heart failure: a computational study},
  Author	= {Constantino, J. and Hu, Y. and Lardo, A.C. and Trayanova,
		  N.A.},
  Journal	= {{AJP}: Heart and Circulatory Physiology},
  Year		= {2013},
  Month		= oct,
  Number	= {8},
  Pages		= {H1265--H1273},
  Volume	= {305},
  DOI		= {10.1152/ajpheart.00426.2013},
  File		= {Constantino2013.pdf:/home/hoermann/.zotero/zotero/krpbc0h6.default/zotero/storage/WU2C5749/Constantino2013.pdf:application/pdf},
  ISSN		= {0363-6135, 1522-1539},
  Keywords	= {CRT},
  Language	= {en},
  ShortTitle	= {Mechanistic insight into prolonged electromechanical delay
		  in dyssynchronous heart failure},
  URL		= {http://ajpheart.physiology.org/cgi/doi/10.1152/ajpheart.00426.2013},
  URLDate	= {2014-11-27}
}

@Article{	  constantino_computational_2012,
  Title		= {A computational approach to understanding the cardiac
		  electromechanical activation sequence in the normal and
		  failing heart, with translation to the clinical practice of
		  {CRT}},
  Author	= {Constantino, J. and Hu, Y. and Trayanova, N.A.},
  Journal	= {Progress in Biophysics and Molecular Biology},
  Year		= {2012},
  Month		= oct,
  Number	= {2-3},
  Pages		= {372--379},
  Volume	= {110},
  DOI		= {10.1016/j.pbiomolbio.2012.07.009},
  File		= {Constantino_2012.pdf:/home/hoermann/.zotero/zotero/krpbc0h6.default/zotero/storage/FM832U4J/Constantino_2012.pdf:application/pdf},
  ISSN		= {00796107},
  Language	= {en},
  URL		= {http://linkinghub.elsevier.com/retrieve/pii/S0079610712000545},
  URLDate	= {2014-11-28}
}

@Article{	  conti_carotid_2016,
  Title		= {Carotid Artery Hemodynamics before and after Stenting:
		  {{A}} Patient Specific {{CFD}} Study},
  Volume	= {141},
  ShortTitle	= {Carotid Artery Hemodynamics before and after Stenting},
  JournalTitle	= {Computers \& Fluids},
  Year		= {2016},
  Pages		= {62--74},
  Author	= {Conti, Michele and Long, Chris and Marconi, Michele and
		  Berchiolli, Raffaella and Bazilevs, Yuri and Reali,
		  Alessandro}
}

@Article{	  cookson2012jbm,
  Title		= {A novel porous mechanical framework for modelling the
		  interaction between coronary perfusion and myocardial
		  mechanics},
  Author	= {Cookson, A.N. and Lee, J. and Michler, C. and Chabiniok,
		  R. and Hyde, E. and Nordsletten, D.A. and Sinclair, M. and
		  Siebes, M. and Smith, N.P.},
  Journal	= {Journal of Biomechanics},
  Year		= {2012},
  Month		= {Mar},
  Number	= {5},
  Pages		= {850--855},
  Volume	= {45},
  DOI		= {10.1016/j.jbiomech.2011.11.026},
  File		= {:Cookson2012JBM.pdf:PDF},
  ISSN		= {0021-9290},
  Keywords	= {perfusion, FSI, heart},
  Publisher	= {Elsevier BV},
  URL		= {http://dx.doi.org/10.1016/j.jbiomech.2011.11.026}
}

@Book{		  coron2007control,
  Author	= {Coron, J.M.},
  ISBN		= {9780821836682},
  lccn		= {2006048031},
  Publisher	= {American Mathematical Society},
  Series	= {Mathematical surveys and monographs},
  Title		= {Control and nonlinearity},
  Year		= {2007}
}

###Book{	  coron2007control,
  Author	= {Coron, J.M.},
  ISBN		= {9780821836682},
  lccn		= {2006048031},
  Publisher	= {American Mathematical Society},
  Series	= {Mathematical surveys and monographs},
  Title		= {Control and nonlinearity},
  URL		= {http://books.google.com.pe/books?id=aEKv1bpcrKQC},
  Year		= {2007},
  bdsk-url-1	= {http://books.google.com.pe/books?id=aEKv1bpcrKQC}
}

@article{corrado2015identification,
  title={Identification of weakly coupled multiphysics problems. Application to the inverse problem of electrocardiography},
  author={Corrado, Cesare and Gerbeau, Jean-Fr{\'e}d{\'e}ric and Moireau, Philippe},
  journal={Journal of Computational Physics},
  volume={283},
  pages={271--298},
  year={2015},
  publisher={Elsevier}
}

@TechReport{	  coulaud-94,
  Annote	= {mhd, free surface, asymptotic method, high frequencies,
		  metal forming},
  Author	= {Coulaud, O.},
  code		= {mhd35},
  Institution	= {INRIA RR-2407},
  Title		= {Mod{\'e}lisation haute fr{\'e}quence en
		  magn{\'e}tohydrodynamique: aspect magn{\'e}tique},
  Year		= {1994}
}

###TechReport{	  coulaud-94,
  Annote	= {mhd, free surface, asymptotic method, high frequencies,
		  metal forming},
  Author	= {Coulaud, O.},
  code		= {mhd35},
  Institution	= {INRIA RR-2407},
  Title		= {Mod{\'e}lisation haute fr{\'e}quence en
		  magn{\'e}tohydrodynamique: aspect magn{\'e}tique},
  Year		= {1994}
}

@Article{	  coulaud-henrot-94,
  Annote	= {mhd, free surface, metal forming},
  Author	= {Coulaud, O. and Henrot, A.},
  code		= {mhd34},
  Journal	= {SIAM J. Numer. Anal.},
  Number	= {4},
  Pages		= {1109-1127},
  Title		= {Numerical approximation of a free boundary problem arising
		  in electromagnetic shaping},
  Volume	= {31},
  Year		= {1994}
}

###Article{	  coulaud-henrot-94,
  Annote	= {mhd, free surface, metal forming},
  Author	= {Coulaud, O. and Henrot, A.},
  code		= {mhd34},
  Journal	= {SIAM J. Numer. Anal.},
  Number	= {4},
  Pages		= {1109-1127},
  Title		= {Numerical approximation of a free boundary problem arising
		  in electromagnetic shaping},
  Volume	= {31},
  Year		= {1994}
}

@Book{		  cover2012inftheory,
  Title		= {Elements of information theory},
  Author	= {Cover, Thomas M and Thomas, Joy A},
  Publisher	= {John Wiley \& Sons},
  Year		= {2012}
}

@InProceedings{	  crelier_rapid_2011,
  Title		= {Rapid Relative Pressure Map Computation from
		  Velocity-Encoded Phase-Contrast Measurements},
  BookTitle	= {{{ISMRM}} 19th {{Annual Meeting}} \& {{Exhibition}}},
  Author	= {Crelier, Gerard R. and Brunner, D. and Kozerke, Sebastian
		  and Boesiger, Peter},
  Year		= {2011},
  Publisher	= {{International Society for Magnetic Resonance in Medicine
		  (ISMRM)}}
}

@Book{		  curtain1995introduction,
  Author	= {Curtain, R.F. and Zwart, H.J.},
  ISBN		= {9780387944753},
  lccn		= {95005549},
  Publisher	= {Springer-Verlag},
  Series	= {Texts in applied mathematics},
  Title		= {An introduction to infinite-dimensional linear systems
		  theory},
  Year		= {1995}
}

###Book{	  curtain1995introduction,
  Author	= {Curtain, R.F. and Zwart, H.J.},
  ISBN		= {9780387944753},
  lccn		= {95005549},
  Publisher	= {Springer-Verlag},
  Series	= {Texts in applied mathematics},
  Title		= {An introduction to infinite-dimensional linear systems
		  theory},
  URL		= {http://books.google.com/books?id=G\_x-F-l2V2UC},
  Year		= {1995},
  bdsk-url-1	= {http://books.google.com/books?id=G%5C_x-F-l2V2UC}
}

@Book{		  cvphysiology,
  Title		= {{Cardiovascular Physiology Concepts}},
  Author	= {Klabunde, R.},
  Year		= {2011}
}

###Book{	  cvphysiology,
  Title		= {{Cardiovascular Physiology Concepts}},
  Author	= {Klabunde, R.},
  Address	= {\url{http://www.cvphysiology.com}},
  Year		= {2011}
}

@Article{	  cyron2014ijes,
  Title		= {Vascular homeostasis and the concept of mechanobiological
		  stability },
  Author	= {C.J. Cyron and J.D. Humphrey},
  Journal	= {International Journal of Engineering Science },
  Year		= {2014},
  Pages		= {203 - 223},
  Volume	= {85},
  Abstract	= {Abstract Vascular mechanics has been studied in depth
		  since the early 1970s mainly following classical concepts
		  from continuum mechanics. Yet, an important distinction of
		  blood vessels, in contrast to typical engineering
		  materials, is the continuous degradation and deposition of
		  material in these living tissues. In this paper we examine
		  mechanical consequences of such mass turnover. Motivated by
		  Lyapunov?s stability theory, we introduce the new concepts
		  of mechanobiological equilibrium and stability and
		  demonstrate that blood vessels can maintain their structure
		  and function under physiological conditions only if new
		  material is deposited at a certain prestress and the
		  vessels are both mechanically and mechanobiologically
		  stable. Moreover, we introduce the concept of
		  mechanobiological adaptivity as a third corner stone to
		  understand vascular behavior on a continuum level. We
		  demonstrate that adaptivity represents a key difference
		  between the stability of mechanobiological and typical
		  human-made systems. Based on these ideas, we suggest a
		  change of paradigm that can be illustrated by considering a
		  common arterial pathology. We suggest that aneurysms can be
		  interpreted as mechanobiological instabilities and that
		  predictions of their rupture risk should not only consider
		  the maximal diameter or wall stress, but also the
		  mechanobiological stability. A mathematical analysis of the
		  impact of the different model parameters on the so-called
		  mechanobiological stability margin, a single scalar used to
		  characterize mechanobiological stability, reveals that this
		  stability increases with the characteristic time constant
		  of mass turnover, material stiffness, and capacity for
		  stress-dependent changes in mass production. As each of
		  these parameters may be modified by appropriate drugs, the
		  theory developed in this paper may guide both prognosis and
		  the development of new therapies for arterial pathologies
		  such as aneurysms. },
  DOI		= {http://dx.doi.org/10.1016/j.ijengsci.2014.08.003},
  ISSN		= {0020-7225},
  Keywords	= {Growth},
  timestamp	= {2015/09/22},
  URL		= {http://www.sciencedirect.com/science/article/pii/S002072251400175X}
}

@Article{	  cyron2014rsoc,
  Title		= {Mechanobiological stability: a new paradigm to understand
		  the enlargement of aneurysms?},
  Author	= {Cyron, C. J. and Wilson, J. S. and Humphrey, J. D.},
  Journal	= {Journal of The Royal Society Interface},
  Year		= {2014},
  Number	= {100},
  Volume	= {11},
  Abstract	= {Static and dynamic mechanical instabilities were
		  previously suggested, and then rejected, as mediators of
		  aneurysmal development, which leaves open the question of
		  the underlying mechanism. In this paper, we suggest as a
		  new paradigm the interpretation of aneurysms as
		  mechanobiological instabilities. For illustrative purposes,
		  we compare analytical calculations with computational
		  simulations of the growth and remodelling of idealized
		  fusiform abdominal aortic aneurysms and experimental and
		  clinical findings. We show that the concept of
		  mechanobiological stability is consistent with the impact
		  of risk factors such as age, smoking or diabetes on the
		  initiation and enlargement of these lesions as well as
		  adaptive processes in the healthy abdominal aorta such as
		  dilatation during ageing or in hypertension. In general,
		  high stiffness, an increased capacity for stress-mediated
		  matrix production, and slow matrix turnover all improve the
		  mechanobiological stability of blood vessels. This
		  theoretical understanding may help guide prognosis and the
		  development of future therapies for aneurysms as it enables
		  systematic ways to attenuate enlargement.},
  DOI		= {10.1098/rsif.2014.0680},
  ISSN		= {1742-5689},
  Publisher	= {The Royal Society},
  timestamp	= {2015/09/22}
}

@Misc{		  d2010valvular,
  Title		= {Valvular heart disease: the next cardiac epidemic},
  Author	= {d'Arcy, JL and Prendergast, BD and Chambers, JB and Ray,
		  SG and Bridgewater, B},
  Year		= {2010},
  Publisher	= {BMJ Publishing Group Ltd}
}

@Book{		  dafermos-00,
  Address	= {Berlin},
  Author	= {Dafermos, C. M.},
  Publisher	= {Springer-Verlag},
  Title		= {Hyperbolic conservation laws in continuum physics},
  Volume	= {GM 325},
  Year		= {2000}
}

###Book{	  dafermos-00,
  Address	= {Berlin},
  Author	= {Dafermos, C. M.},
  Publisher	= {Springer-Verlag},
  Title		= {Hyperbolic conservation laws in continuum physics},
  Volume	= {GM 325},
  Year		= {2000}
}

@Article{	  daskalopoulos2012mimi,
  Title		= {Myofibroblasts in the infarct area: concepts and
		  challenges},
  Author	= {Daskalopoulos, Evangelos P and Janssen, Ben JA and
		  Blankesteijn, W Matthijs},
  Journal	= {Microscopy and Microanalysis},
  Year		= {2012},
  Number	= {01},
  Pages		= {35--49},
  Volume	= {18},
  File		= {:daskalopoulos12.pdf:PDF},
  Publisher	= {Cambridge Univ Press},
  timestamp	= {2014/09/17}
}

@Book{		  dautray,
  Author	= {Dautray, R. and Lions, J.-L.},
  Publisher	= {Masson},
  Title		= {Analyse math{\'e}matique et calcul num{\'e}rique pour les
		  sciences et les techniques},
  Volume	= {2},
  Year		= {1987}
}

###Book{	  dautray,
  Author	= {Dautray, R. and Lions, J.-L.},
  Publisher	= {Masson},
  Title		= {Analyse math{\'e}matique et calcul num{\'e}rique pour les
		  sciences et les techniques},
  Volume	= {2},
  Year		= {1987}
}

@Article{	  davidson-lindsay-98,
  Annote	= {mhd, aluminium},
  Author	= {Davidson, P.A and Lindsay, R.I.},
  Journal	= {J. Fluid Mech.},
  Pages		= {273--295},
  Title		= {Stability of interfacial waves in aluminium reduction
		  cells},
  Volume	= {362},
  Year		= {1998}
}

###Article{	  davidson-lindsay-98,
  Annote	= {mhd, aluminium},
  Author	= {Davidson, P.A and Lindsay, R.I.},
  Journal	= {J. Fluid Mech.},
  Pages		= {273--295},
  Title		= {Stability of interfacial waves in aluminium reduction
		  cells},
  Volume	= {362},
  Year		= {1998}
}

@InProceedings{	  de_hoon_4d_2014,
  Title		= {{{4D MRI}} Flow Coupled to Physics-Based Fluid Simulation
		  for Blood-Flow Visualization},
  Volume	= {33},
  BookTitle	= {Computer {{Graphics Forum}}},
  Publisher	= {{Wiley Online Library}},
  Year		= {2014},
  Pages		= {121--130},
  Author	= {de Hoon, NHLC and van Pelt, Roy and Jalba, A. and
		  Vilanova, Anna},
  Options	= {useprefix=true}
}

@Article{	  degroff-2000,
  Author	= {DeGroff, C.G. and Shandas, R. and Valdes-Cruz, L.},
  Journal	= {Eur J Echocardiography},
  Pages		= {42--54},
  Title		= {Utility of the Proximal Jet Width in the Assessment of
		  Regurgitant and Stenotic Orifices - Effect of Low Velocity
		  Filter and Comparison to Actual Vena Contracta Width: an
		  {\em In Vitro} and Numerical Study},
  Volume	= {1},
  Year		= {2000}
}

###Article{	  degroff-2000,
  Author	= {DeGroff, C.G. and Shandas, R. and Valdes-Cruz, L.},
  Journal	= {Eur J Echocardiography},
  Pages		= {42--54},
  Title		= {Utility of the Proximal Jet Width in the Assessment of
		  Regurgitant and Stenotic Orifices - Effect of Low Velocity
		  Filter and Comparison to Actual Vena Contracta Width: an
		  {\em In Vitro} and Numerical Study},
  Volume	= {1},
  Year		= {2000}
}

@Article{	  dehart-2003,
  Author	= {De Hart, J. and Peters, G.W.M. and Schreurs, P.J.G. and
		  Baaijens, F.P.T.},
  Journal	= {Journal of Biomechanics},
  Pages		= {103--112},
  Title		= {A three-dimensional computational analysis of
		  fluid-structure interaction in the aortic valve},
  Volume	= {36},
  Year		= {2003}
}

###Article{	  dehart-2003,
  Author	= {De Hart, J. and Peters, G.W.M. and Schreurs, P.J.G. and
		  Baaijens, F.P.T.},
  Journal	= {Journal of Biomechanics},
  Pages		= {103--112},
  Title		= {A three-dimensional computational analysis of
		  fluid-structure interaction in the aortic valve},
  Volume	= {36},
  Year		= {2003}
}

@Article{	  dekorte-hansen-steen-11,
  Author	= {de Korte, Chris L. and Hansen, Hendrik H. G. and van der
		  Steen, Anton F. W.},
  Title		= {Vascular ultrasound for atherosclerosis imaging},
  Volume	= {1},
  Number	= {4},
  Pages		= {565-575},
  Year		= {2011},
  DOI		= {10.1098/rsfs.2011.0024},
  Abstract	= {Cardiovascular disease is a leading cause of death in the
		  Western world. Therefore, detection and quantification of
		  atherosclerotic disease is of paramount importance to
		  monitor treatment and possible prevention of acute events.
		  Vascular ultrasound is an excellent technique to assess the
		  geometry of vessel walls and plaques. The high temporal as
		  well as spatial resolution allows quantification of luminal
		  area and plaque size and volume. While carotid arteries can
		  be imaged non-invasively, scanning of coronary arteries
		  requires invasive intravascular catheters. Both techniques
		  have already demonstrated their clinical applicability.
		  Using linear array technology, detection of disease as well
		  as monitoring of pharmaceutical treatment in carotid
		  arteries are feasible. Data acquired with intravascular
		  ultrasound catheters have proved to be especially
		  beneficial in understanding the development of
		  atherosclerotic disease in coronary arteries. With the
		  introduction of vascular elastography not only the geometry
		  of plaques but also the risk for rupture of plaques might
		  be identified. These so-called vulnerable plaques are
		  frequently not flow-limiting and rupture of these plaques
		  is responsible for the majority of cerebral and cardiac
		  ischaemic events. Intravascular ultrasound elastography
		  studies have demonstrated a high correlation between high
		  strain and vulnerable plaque features, both ex vivo and in
		  vivo. Additionally, pharmaceutical intervention could be
		  monitored using this technique. Non-invasive vascular
		  elastography has recently been developed for carotid
		  applications by using compound scanning. Validation and
		  initial clinical evaluation is currently being performed.
		  Since abundance of vasa vasorum (VV) is correlated with
		  vulnerable plaque development, quantification of VV might
		  be a unique tool to even prevent this from happening. Using
		  ultrasound contrast agents, it has been demonstrated that
		  VV can be identified and quantified. Although far from
		  routine clinical application, non-invasive and
		  intravascular ultrasound VV imaging might pave the road to
		  prevent atherosclerotic disease in an early phase. This
		  paper reviews the conventional vascular ultrasound
		  techniques as well as vascular ultrasound strain and
		  vascular ultrasound VV imaging.},
  Journal	= {Interface Focus}
}

###Article{	  dekorte-hansen-steen-11,
  Author	= {de Korte, Chris L. and Hansen, Hendrik H. G. and van der
		  Steen, Anton F. W.},
  Title		= {Vascular ultrasound for atherosclerosis imaging},
  Volume	= {1},
  Number	= {4},
  Pages		= {565-575},
  Year		= {2011},
  DOI		= {10.1098/rsfs.2011.0024},
  Abstract	= {Cardiovascular disease is a leading cause of death in the
		  Western world. Therefore, detection and quantification of
		  atherosclerotic disease is of paramount importance to
		  monitor treatment and possible prevention of acute events.
		  Vascular ultrasound is an excellent technique to assess the
		  geometry of vessel walls and plaques. The high temporal as
		  well as spatial resolution allows quantification of luminal
		  area and plaque size and volume. While carotid arteries can
		  be imaged non-invasively, scanning of coronary arteries
		  requires invasive intravascular catheters. Both techniques
		  have already demonstrated their clinical applicability.
		  Using linear array technology, detection of disease as well
		  as monitoring of pharmaceutical treatment in carotid
		  arteries are feasible. Data acquired with intravascular
		  ultrasound catheters have proved to be especially
		  beneficial in understanding the development of
		  atherosclerotic disease in coronary arteries. With the
		  introduction of vascular elastography not only the geometry
		  of plaques but also the risk for rupture of plaques might
		  be identified. These so-called vulnerable plaques are
		  frequently not flow-limiting and rupture of these plaques
		  is responsible for the majority of cerebral and cardiac
		  ischaemic events. Intravascular ultrasound elastography
		  studies have demonstrated a high correlation between high
		  strain and vulnerable plaque features, both ex vivo and in
		  vivo. Additionally, pharmaceutical intervention could be
		  monitored using this technique. Non-invasive vascular
		  elastography has recently been developed for carotid
		  applications by using compound scanning. Validation and
		  initial clinical evaluation is currently being performed.
		  Since abundance of vasa vasorum (VV) is correlated with
		  vulnerable plaque development, quantification of VV might
		  be a unique tool to even prevent this from happening. Using
		  ultrasound contrast agents, it has been demonstrated that
		  VV can be identified and quantified. Although far from
		  routine clinical application, non-invasive and
		  intravascular ultrasound VV imaging might pave the road to
		  prevent atherosclerotic disease in an early phase. This
		  paper reviews the conventional vascular ultrasound
		  techniques as well as vascular ultrasound strain and
		  vascular ultrasound VV imaging.},
  URL		= {http://rsfs.royalsocietypublishing.org/content/1/4/565.abstract},
  EPrint	= {http://rsfs.royalsocietypublishing.org/content/1/4/565.full.pdf+html},
  Journal	= {Interface Focus}
}

@Article{	  delattre2012ir,
  Title		= {In Vivo and Cardiac Diffusion-Weighted and Magnetic
		  Resonance and Imaging},
  Author	= {Delattre, Benedicte and Viallon, Magalie and Wei,
		  Hongjiang and Zhu, Yuemin and Feiweier, Thorsten and Pai,
		  Vinay and Wen, Han and Croisille, Pierre},
  Journal	= {Investigative Radiology},
  Year		= {2012},
  Number	= {11},
  Volume	= {47},
  File		= {:Delattre2012IR.pdf:PDF},
  Keywords	= {IVIM, heart},
  review	= {ORIGINAL ARTICLE
		  
		  In Vivo Cardiac Diffusion-Weighted Magnetic Resonance
		  Imaging Quantification of Normal Perfusion and Diffusion
		  Coefficients With
		  
		  Intravoxel Incoherent Motion Imaging
		  
		  Benedicte M.A. Delattre, PhD,* Magalie Viallon, PhD,Ã
		  Hongjiang Wei, MSc,* Yuemin M. Zhu, PhD,* Thorsten
		  Feiweier, PhD,Ã¾ Vinay M. Pai, PhD,Â§ Han Wen, PhD,Â§ and
		  Pierre Croisille, MD, PhD*||
		  
		  image postprocessing with the PCATMIP algorithm. This study
		  provides new Objectives: Diffusion-weighted imaging (DWI)
		  and the introduction of the perspectives for perfusion
		  imaging without a contrast agent and demonstrates
		  intravoxel incoherent motion (IVIM) model have provided a
		  unique method that IVIM parameters can act as promising
		  tools to further characterize micro- for evaluating
		  perfusion and diffusion within a tissue without the need
		  for vascular abnormalities or dysfunction. a contrast
		  agent. Despite its relevance, cardiac DWI has thus far been
		  limited by low b values because of signal loss induced by
		  physiological motion. The Key Words: diffusion-weighted
		  imaging, heart, IVIM, PCA, goal of this study was to
		  develop a methodology for estimating IVIM para- temporal
		  MIP, in vivo meters of in vivo cardiac magnetic resonance
		  imaging using an efficient DWI
		  
		  (Invest Radiol 2012;47: 662Y670) acquisition framework.
		  This was achieved by investigating various acquisi- tion
		  strategies (principal component analysis [PCA] filtering
		  and temporal maximum intensity projection [PCATMIP] and
		  single trigger delay [TD]) and fitting methods. D
		  
		  iffusion-weighted imaging (DWI) has been demonstrated over
		  the last 2 decades to be a unique method for gaining access
		  to
		  
		  Material and Methods: Simulations were performed on a
		  synthetic dataset the structural and physiological
		  characteristics of tissues. It has been
		  
		  of diffusion-weighted signal intensity (SI) to determine
		  the fitting method extensively developed for applications
		  in the brain, notably for its
		  
		  that would yield IVIM parameters with the greatest
		  accuracy. The required ability to detect stroke earlier
		  than other conventional magnetic res-
		  
		  number of onance sequences can. 1 It is also largely used
		  in neurological pathol-
		  
		  b values to correctly estimate IVIM parameters was also
		  investigat- ed. Breath-hold DWI scans were performed for 12
		  volunteers to collect several ogies, where fiber
		  architecture is assessed using diffusion tensor
		  
		  TD values during diastole. Thirteen imaging. 2 Moreover,
		  the introduction of the intravoxel incoherent
		  
		  b values ranging from 0 to 550 s/mm2
		  
		  were used. The IVIM parameters derived using the data from
		  all the acquired motion (IVIM) model by Le Bihan et al 3
		  gave rise to the ability to as-
		  
		  TDs (PCATMIP technique) were compared with those derived
		  using a single sess tissue perfusion and diffusion
		  parameters without the need for a
		  
		  acquisition performed at an optimized diastolic time point
		  (1TD). contrast agent. Indeed, signal loss in DWI is
		  affected by mobile water molecules that are present in both
		  the intracellular and extracellular
		  
		  Results: The main result of this study was that PCATMIP,
		  when combined with a fitting model that accounted for T1
		  and T2 relaxation, provided IVIM compartments, as well as
		  in blood flowing in capillaries and vessels.
		  
		  parameters with less variability. However, an acquisition
		  performed with This model is therefore of wide interest for
		  nonneurologic patholo-
		  
		  1 optimized diastolic TD provided results that were as good
		  as those provided gies. For example, this technique has
		  been used to assess the differen-
		  
		  using PCATMIP if the R-R variability during the acquisition
		  was sufficiently tiation state of lesions in the liver, 4
		  kidney,5 and pancreas6 and also to
		  
		  low ( characterize cirrhosis. 7,8 Whereas the acquisition
		  strategy is similar
		  
		  T5%). Furthermore, the use of only 9 b values (that could
		  be acquired in 2 breath-holds), instead of 13 for abdominal
		  organ applications, the data modeling and fitting meth-b
		  values (requiring 3 breath-holds), was suffi- cient to
		  determine the IVIM parameters. ods vary considerably from
		  one study to another. Recently, Lemke
		  
		  Conclusions: This study demonstrates that IVIM is
		  technically feasible invivo and et al 9 proposed a
		  refinement of the DWI signal model proposed by
		  
		  reports for the first time the perfusion fraction, Le Bihan
		  et al 3 that includes the T1 and T2 relaxation parameters
		  
		  f, and the diffusion coefficients, D and of the blood and
		  tissue as well as the echo time (TE)/repetition timeD*, for
		  the cardiac DWI of healthy volunteers. Motion-induced
		  signal loss, which is the main problem associated with
		  cardiac DWI, could be avoided (TR) sequence parameters and
		  thus represents a new approach to
		  
		  with the combined use of sliding acquisition during the
		  cardiac cycle and data postprocessing. Thus far, however,
		  very few studies have investigated cardiac
		  
		  DWI, and the only study that evaluated cardiac perfusion
		  and diffu- sion parameters in vivo using IVIM was performed
		  in the canine heart.10 In fact, cardiac DWI is very
		  challenging because cardiac mo-
		  
		  Received November 18, 2011; and accepted for publication,
		  after revision, tion can induce a large signal loss that,
		  until now, has limited diffusion June 25, 2012. weighting
		  to low b values. Therefore, strategies must be developed
		  
		  From the *CREATIS; CNRS (UMR 5220); INSERM (U1044); INSA
		  Lyon; Uni- versiteÅ½ de Lyon, Lyon, France; ?Department of
		  Radiology, University Hospitals to minimize physiological
		  motion during acquisition and to sep- of Geneva, Geneva,
		  Switzerland; ?Siemens AG, Healthcare Sector, Erlangen,
		  arate signal loss due to motion from that due to diffusion.
		  Recently, Germany; Â§Imaging Physics Laboratory,
		  Biochemistry and Biophysics Core, Rapacchi et al11 proposed
		  a method to obtain cardiac DWI in which National Heart,
		  Lung and Blood Institute, National Institutes of Health,
		  motion-induced signal loss was minimized by PCA filtering
		  and tem- Bethesda, MD; and ||Department of Radiology,
		  Ho?pital Nord, CHU Saint- Etienne, UniversiteÅ½
		  Jean-Monnet, France. poral maximum intensity projection
		  (PCATMIP) techniques. These
		  
		  Conflicts of interest and sources of funding: Y. Zhu, P.
		  Croisille, and B.M.A. acquisitions were performed while the
		  subject was freely breathing Delattre received support from
		  French ANR grant. T. Feiweier is employed and therefore
		  necessitated a coregistration of the images before any by
		  Siemens AG. additional analysis. However, other potential
		  strategies include the
		  
		  Supplemental digital contents are available for this
		  article. Direct URL citations appear in the printed text
		  and are provided in the HTML and PDF versions of this use
		  of respiratory triggering (PACE)
		  
		  12 or breath-holds. As a result, article on the journal?s
		  Web site (www.investigativeradiology.com). the method of
		  choice could be aligned to the technique that provides
		  
		  Reprints: Pierre Croisille, MD, PhD, Service de Radiologie,
		  CHU Ho?pital Nord, the most accurate perfusion and
		  diffusion parameters. In this study, Avenue Albert Raimond,
		  42270 Saint-Priest en Jarez, France. E-mail: croisille@ we
		  have chosen to acquire data during subject breath-holds to
		  avoid creatis.insa-lyon.fr.
		  
		  Copyright * 2012 by Lippincott Williams & Wilkins the
		  potential source of signal variability resulting from the
		  coregis- ISSN: 0020-9996/12/4711Y0662 tration step. We
		  compared the IVIM parameters obtained at a single
		  
		  662 www.investigativeradiology.com Investigative Radiology
		  & Volume 47, Number 11, November 2012
		  
		  Copyright Â© 2012 Lippincott Williams & Wilkins.
		  Unauthorized reproduction of this article is prohibited.}
}

@PhdThesis{	  delfino-96,
  Annote	= {hemodynamics, vessel wall, constitutive law},
  Author	= {Delfino, A.},
  code		= {hemo},
  School	= {Ecole Polytechnique F{\'e}d{\'e}rale de Lausanne},
  Title		= {Analysis of stress field in a model of the human carotid
		  bifurcation},
  Year		= {1996}
}

###PhdThesis{	  delfino-96,
  Annote	= {hemodynamics, vessel wall, constitutive law},
  Author	= {Delfino, A.},
  code		= {hemo},
  School	= {Ecole Polytechnique F{\'e}d{\'e}rale de Lausanne},
  Title		= {Analysis of stress field in a model of the human carotid
		  bifurcation},
  Year		= {1996}
}

@TechReport{	  delia-mirabella-veneziani-11,
  Author	= {{D'Elia}, M. and Mirabella, L. and Passerini, T. and
		  Perego, M. and Piccinelli, M. and Vergara, C. and
		  Veneziani, A.},
  Title		= {Applications of Variational Data Assimilation in
		  Computational Hemodynamics},
  Institution	= {Emory University},
  Year		= 2011,
  Number	= {TR-2011-002}
}

###TechReport{	  delia-mirabella-veneziani-11,
  Author	= {{D'Elia}, M. and Mirabella, L. and Passerini, T. and
		  Perego, M. and Piccinelli, M. and Vergara, C. and
		  Veneziani, A.},
  Title		= {Applications of Variational Data Assimilation in
		  Computational Hemodynamics},
  Institution	= {Emory University},
  Year		= 2011,
  Number	= {TR-2011-002}
}

@Article{	  delia-perego-veneziani-11,
  Title		= {A variational data assimilation procedure for the
		  incompressible Navier-Stokes equations in hemodynamics},
  Author	= {D\'{}Elia, M. and Perego, M. and Veneziani, A.},
  Journal	= {Journal of Scientific Computing},
  Pages		= {1--20},
  Year		= {2011},
  Publisher	= {Springer}
}

###Article{	  delia-perego-veneziani-11,
  Title		= {A variational data assimilation procedure for the
		  incompressible Navier-Stokes equations in hemodynamics},
  Author	= {D\'{}Elia, M. and Perego, M. and Veneziani, A.},
  Journal	= {Journal of Scientific Computing},
  Pages		= {1--20},
  Year		= {2011},
  Publisher	= {Springer}
}

@Article{	  delia2012variational,
  Title		= {A variational data assimilation procedure for the
		  incompressible Navier-Stokes equations in hemodynamics},
  Author	= {D'Elia, Marta and Perego, Mauro and Veneziani,
		  Alessandro},
  Journal	= {Journal of Scientific Computing},
  Volume	= {52},
  Number	= {2},
  Pages		= {340--359},
  Year		= {2012},
  Publisher	= {Springer}
}

@Article{	  delia2013uncertainty,
  Title		= {Uncertainty quantification for data assimilation in a
		  steady incompressible Navier-Stokes problem},
  Author	= {D'Elia, Marta and Veneziani, Alessandro},
  Journal	= {ESAIM: Mathematical Modelling and Numerical Analysis},
  Volume	= {47},
  Number	= {4},
  Pages		= {1037--1057},
  Year		= {2013},
  Publisher	= {EDP Sciences}
}

###Article{	  delia2013uncertainty,
  Title		= {Uncertainty quantification for data assimilation in a
		  steady incompressible Navier-Stokes problem},
  Author	= {DâElia, Marta and Veneziani, Alessandro},
  Journal	= {ESAIM: Mathematical Modelling and Numerical Analysis},
  Volume	= {47},
  Number	= {4},
  Pages		= {1037--1057},
  Year		= {2013},
  Publisher	= {EDP Sciences}
}

@Article{	  delia_uncertainty_2013,
  Title		= {Uncertainty Quantification for Data Assimilation in a
		  Steady Incompressible {{Navier}}-{{Stokes}} Problem},
  Volume	= {47},
  URL		= {http://www.esaim-m2an.org/articles/m2an/abs/2013/04/m2an120056/m2an120056.html},
  Number	= {4},
  JournalTitle	= {ESAIM: Mathematical Modelling and Numerical Analysis},
  URLDate	= {2016-11-18},
  Year		= {2013},
  Pages		= {1037--1057},
  Author	= {D'Elia, Marta and Veneziani, Alessandro}
}

@Article{	  delia_variational_2012,
  langid	= {english},
  Title		= {A {{Variational Data Assimilation Procedure}} for the
		  {{Incompressible Navier}}-{{Stokes Equations}} in
		  {{Hemodynamics}}},
  Volume	= {52},
  ISSN		= {0885-7474, 1573-7691},
  URL		= {http://link.springer.com/10.1007/s10915-011-9547-6},
  DOI		= {10.1007/s10915-011-9547-6},
  Number	= {2},
  JournalTitle	= {Journal of Scientific Computing},
  URLDate	= {2016-11-21},
  Year		= {2012-08},
  Pages		= {340-359},
  Author	= {D'Elia, Marta and Perego, Mauro and Veneziani,
		  Alessandro}
}

@InProceedings{	  delles_influence_2010,
  Title		= {Influence of Imaging Quality on Magnetic Resonance-Based
		  Pressure Gradient Measurements},
  BookTitle	= {Medical {{Imaging}} 2010: {{Biomedical Applications}} in
		  {{Molecular}}, {{Structural}}, and {{Functional Imaging}}},
  Author	= {Delles, Michael and Rengier, Fabian and Ley, Sebastian and
		  von {Tengg-Kobligk}, Hendrik and Kauczor, Hans-Ulrich and
		  Unterhinninghofen, Roland and Dillmann, R{\"u}diger},
  Year		= {2010},
  Month		= mar,
  Volume	= {7626},
  Pages		= {762624},
  Publisher	= {{International Society for Optics and Photonics}},
  DOI		= {10.1117/12.844160},
  Abstract	= {In cardiovascular diagnostics, the knowledge of blood
		  pressure is essential for the physician. Nowadays, blood
		  pressures are usually obtained by catheter measurements or
		  sphygmomanometric methods. These techniques suffer from
		  different drawbacks in terms of invasiveness, observable
		  vessels and the resolution of the pressure values,
		  respectively. Magnetic resonance imaging (MRI) offers a
		  promising approach to establish a method for blood pressure
		  measurements that is able to overcome these difficulties.
		  Phase-contrast MRI is used to acquire velocity-encoded
		  data. Fluid pressure gradients can be derived from the
		  measured velocities using the Navier-Stokes equations.
		  Unfortunately, this technique is known to suffer from a
		  strong sensitivity to imaging quality. Especially the low
		  signal-to-noise ratios (SNR) of phase contrast MRI data
		  combined with the limited spatial and temporal resolution
		  could severely reduce the reliability of computations. In
		  this paper, we analyze computations of blood pressure
		  gradients based on phase contrast MRI measurements of
		  steady and pulsatile flow in a phantom. The influence of
		  image quality of the velocity-encoded data as well as of
		  different segmentation techniques is evaluated. In case of
		  steady flow, the pressure gradient values computed via
		  Navier-Stokes equations show good agreement with
		  theoretical values if physical a-priori knowledge is
		  incorporated. If a pulsatile aortic flow profile is
		  applied, the computed pressure gradients generally match
		  catheter measurements well. Nevertheless, an
		  underestimation of pressure gradient peaks is observed.
		  Different segmentation techniques influence the size of
		  root mean squared errors between computation and
		  measurement as well as their reduction by the use of higher
		  SNRs.}
}

@InProceedings{	  delles_influence_2010-1,
  Title		= {Influence of Imaging Quality on Magnetic Resonance-Based
		  Pressure Gradient Measurements},
  Volume	= {7626},
  URL		= {https://www.spiedigitallibrary.org/conference-proceedings-of-spie/7626/762624/Influence-of-imaging-quality-on-magnetic-resonance-based-pressure-gradient/10.1117/12.844160.short},
  DOI		= {10.1117/12.844160},
  Abstract	= {In cardiovascular diagnostics, the knowledge of blood
		  pressure is essential for the physician. Nowadays, blood
		  pressures are usually obtained by catheter measurements or
		  sphygmomanometric methods. These techniques suffer from
		  different drawbacks in terms of invasiveness, observable
		  vessels and the resolution of the pressure values,
		  respectively. Magnetic resonance imaging (MRI) offers a
		  promising approach to establish a method for blood pressure
		  measurements that is able to overcome these difficulties.
		  Phase-contrast MRI is used to acquire velocity-encoded
		  data. Fluid pressure gradients can be derived from the
		  measured velocities using the Navier-Stokes equations.
		  Unfortunately, this technique is known to suffer from a
		  strong sensitivity to imaging quality. Especially the low
		  signal-to-noise ratios (SNR) of phase contrast MRI data
		  combined with the limited spatial and temporal resolution
		  could severely reduce the reliability of computations. In
		  this paper, we analyze computations of blood pressure
		  gradients based on phase contrast MRI measurements of
		  steady and pulsatile flow in a phantom. The influence of
		  image quality of the velocity-encoded data as well as of
		  different segmentation techniques is evaluated. In case of
		  steady flow, the pressure gradient values computed via
		  Navier-Stokes equations show good agreement with
		  theoretical values if physical a-priori knowledge is
		  incorporated. If a pulsatile aortic flow profile is
		  applied, the computed pressure gradients generally match
		  catheter measurements well. Nevertheless, an
		  underestimation of pressure gradient peaks is observed.
		  Different segmentation techniques influence the size of
		  root mean squared errors between computation and
		  measurement as well as their reduction by the use of higher
		  SNRs.},
  EventTitle	= {Medical {{Imaging}} 2010: {{Biomedical Applications}} in
		  {{Molecular}}, {{Structural}}, and {{Functional Imaging}}},
  BookTitle	= {Medical {{Imaging}} 2010: {{Biomedical Applications}} in
		  {{Molecular}}, {{Structural}}, and {{Functional Imaging}}},
  Publisher	= {{International Society for Optics and Photonics}},
  URLDate	= {2019-03-01},
  Year		= {2010-03-09},
  Pages		= {762624},
  Author	= {Delles, Michael and Rengier, Fabian and Ley, Sebastian and
		  von Tengg-Kobligk, Hendrik and Kauczor, Hans-Ulrich and
		  Unterhinninghofen, Roland and Dillmann, RÃ¼diger}
}

@PhdThesis{	  delmas-81,
  Annote	= {mhd, interface},
  Author	= {Delmas, M.},
  code		= {mhd32},
  School	= {Universit{\'e} Paris-Sud},
  Title		= {Probl{\`e}me magn{\'e}tohydrodynamique li{\'e}s {\`a}
		  l'interface de deux fluides},
  Year		= {1981}
}

###PhdThesis{	  delmas-81,
  Annote	= {mhd, interface},
  Author	= {Delmas, M.},
  code		= {mhd32},
  School	= {Universit{\'e} Paris-Sud},
  Title		= {Probl{\`e}me magn{\'e}tohydrodynamique li{\'e}s {\`a}
		  l'interface de deux fluides},
  Year		= {1981}
}

@Article{	  denisova,
  Author	= {Denisova, I.V.},
  Journal	= {Acta Applicandae Mathematicae},
  Pages		= {31-40},
  Title		= {Problem of the motion of two viscous incompressible fluids
		  separated by a closed free interface},
  Volume	= {37},
  Year		= {1994}
}

###Article{	  denisova,
  Author	= {Denisova, I.V.},
  Journal	= {Acta Applicandae Mathematicae},
  Pages		= {31-40},
  Title		= {Problem of the motion of two viscous incompressible fluids
		  separated by a closed free interface},
  Volume	= {37},
  Year		= {1994}
}

@Article{	  denisova2,
  Author	= {Denisova, I.V. and Solonnikov, V.A.},
  Journal	= {St. Petersbg. Math. J.},
  Number	= {5},
  Pages		= {755-786},
  Title		= {Classical solvability of the problem on the motion of two
		  viscous incompressible fluids},
  Volume	= {7},
  Year		= {1996}
}

###Article{	  denisova2,
  Author	= {Denisova, I.V. and Solonnikov, V.A.},
  Journal	= {St. Petersbg. Math. J.},
  Number	= {5},
  Pages		= {755-786},
  Title		= {Classical solvability of the problem on the motion of two
		  viscous incompressible fluids},
  Volume	= {7},
  Year		= {1996}
}

@Article{	  deparis-discacciati-fourestey-quarteroni-06,
  Author	= {Deparis, S. and Discacciati, M. and Fourestey, G. and
		  Quarteroni, A.},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Number	= {41-43},
  Pages		= {5797--5812},
  Title		= {Fluid-structure algorithms based on {S}teklov-{P}oincar\'e
		  operators},
  Volume	= {195},
  Year		= {2006}
}

###Article{	  deparis-discacciati-fourestey-quarteroni-06,
  Author	= {Deparis, S. and Discacciati, M. and Fourestey, G. and
		  Quarteroni, A.},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Number	= {41-43},
  Pages		= {5797--5812},
  Title		= {Fluid-structure algorithms based on {S}teklov-{P}oincar\'e
		  operators},
  Volume	= {195},
  Year		= {2006}
}

@InProceedings{	  deparis-discacciati-quarteroni-04,
  Author	= {Deparis, S. and Discacciati, M. and Quarteroni, A.},
  BookTitle	= {Proceedings of the Third International Conference on
		  Computational Fluid Dynamics (ICCFD3)},
  Title		= {A domain decomposition framework for fluid-structure
		  interaction problems},
  Year		= {2004}
}

###InProceedings{ deparis-discacciati-quarteroni-04,
  Author	= {Deparis, S. and Discacciati, M. and Quarteroni, A.},
  BookTitle	= {Proceedings of the Third International Conference on
		  Computational Fluid Dynamics (ICCFD3)},
  Title		= {A domain decomposition framework for fluid-structure
		  interaction problems},
  Year		= {2004}
}

@Article{	  deparis-fernandez-formaggia-03,
  Author	= {Deparis, S. and Fern{\'a}ndez, M.A. and Formaggia, L.},
  fjournal	= {M2AN. Mathematical Modelling and Numerical Analysis},
  ISSN		= {0764-583X},
  Journal	= {M2AN Math. Model. Numer. Anal.},
  mrclass	= {74F10 (65M99 76D05 76M25)},
  mrnumber	= {MR2018432 (2004i:74035)},
  Number	= {4},
  Pages		= {601--616},
  Title		= {Acceleration of a fixed point algorithm for
		  fluid-structure interaction using transpiration
		  conditions},
  Volume	= {37},
  Year		= {2003}
}

###Article{	  deparis-fernandez-formaggia-03,
  Author	= {Deparis, S. and Fern{\'a}ndez, M.A. and Formaggia, L.},
  fjournal	= {M2AN. Mathematical Modelling and Numerical Analysis},
  ISSN		= {0764-583X},
  Journal	= {M2AN Math. Model. Numer. Anal.},
  mrclass	= {74F10 (65M99 76D05 76M25)},
  mrnumber	= {MR2018432 (2004i:74035)},
  Number	= {4},
  Pages		= {601--616},
  Title		= {Acceleration of a fixed point algorithm for
		  fluid-structure interaction using transpiration
		  conditions},
  Volume	= {37},
  Year		= {2003}
}

@InProceedings{	  deparis-fernandez-formaggia-nobile-03,
  Author	= {Deparis, S. and Fern{\'a}ndez, M.A. and Formaggia, L. and
		  Nobile, F.},
  BookTitle	= {Second M.I.T. Conference on Computational Fluid and Solid
		  Mechanics},
  code		= {fsi9},
  Editor	= {K.J. Bathe},
  page		= {1307-1311},
  Publisher	= {Elsevier},
  Title		= {Acceleration of a fixed point algorithm for
		  fluid-structure interaction using transpiration
		  conditions},
  Year		= {2003}
}

###InProceedings{ deparis-fernandez-formaggia-nobile-03,
  Author	= {Deparis, S. and Fern{\'a}ndez, M.A. and Formaggia, L. and
		  Nobile, F.},
  BookTitle	= {Second M.I.T. Conference on Computational Fluid and Solid
		  Mechanics},
  code		= {fsi9},
  Editor	= {K.J. Bathe},
  page		= {1307-1311},
  Publisher	= {Elsevier},
  Title		= {Acceleration of a fixed point algorithm for
		  fluid-structure interaction using transpiration
		  conditions},
  Year		= {2003}
}

@Unpublished{	  deparis-gerbeau-vasseur,
  Author	= {Deparis, S. and Gerbeau, J-F. and Vasseur, X.},
  Note		= {RR INRIA No 5277, 2004},
  Title		= {{A Dynamic Preconditioner for Newton-Krylov Algorithms.
		  Application to Fluid-Structure Interaction}}
}

###Unpublished{	  deparis-gerbeau-vasseur,
  Author	= {Deparis, S. and Gerbeau, J-F. and Vasseur, X.},
  Note		= {RR INRIA No 5277, 2004},
  Title		= {{A Dynamic Preconditioner for Newton-Krylov Algorithms.
		  Application to Fluid-Structure Interaction}}
}

@Article{	  descloux-flueck-romerio-91,
  Author	= {Descloux, J. and Flueck, M. and Romerio, M.V.},
  Journal	= {Magnetohydrodynamics in Process Metallurgy},
  Pages		= {107-110},
  Publisher	= {The Minerals, Metals & Materials Society},
  Title		= {Modelling for instabilities in Hall-Heroult cells :
		  mathematical and numerical aspects},
  Year		= {1991}
}

###Article{	  descloux-flueck-romerio-91,
  Author	= {Descloux, J. and Flueck, M. and Romerio, M.V.},
  Journal	= {Magnetohydrodynamics in Process Metallurgy},
  Pages		= {107-110},
  Publisher	= {The Minerals, Metals & Materials Society},
  Title		= {Modelling for instabilities in Hall-Heroult cells :
		  mathematical and numerical aspects},
  Year		= {1991}
}

@Article{	  descloux-flueck-romerio-91b,
  Author	= {Descloux, J. and Flueck, M. and Romerio, M.V.},
  Journal	= {Light Metal},
  Pages		= {275-281},
  Title		= {Stability in aluminium reduction cells : a spectral
		  problem solved by an iterative procedure},
  Year		= {1994}
}

###Article{	  descloux-flueck-romerio-91b,
  Author	= {Descloux, J. and Flueck, M. and Romerio, M.V.},
  Journal	= {Light Metal},
  Pages		= {275-281},
  Title		= {Stability in aluminium reduction cells : a spectral
		  problem solved by an iterative procedure},
  Year		= {1994}
}

@Article{	  descloux-frosio-flueck-89,
  Author	= {Descloux, J. and Frosio, R. and Fl{\"u}ck, M.},
  code		= {mob2},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Number	= {3},
  Pages		= {215--226},
  Title		= {A two fluids stationary free boundary problem},
  Volume	= {77},
  Year		= {1989}
}

###Article{	  descloux-frosio-flueck-89,
  Author	= {Descloux, J. and Frosio, R. and Fl{\"u}ck, M.},
  code		= {mob2},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Number	= {3},
  Pages		= {215--226},
  Title		= {A two fluids stationary free boundary problem},
  Volume	= {77},
  Year		= {1989}
}

@Article{	  descloux-jaccard-romerio-91,
  Annote	= {mhd, aluminium, long time, stability},
  Author	= {Descloux, J. and Jaccard, Y. and Romerio, M.V.},
  code		= {mhd23},
  Journal	= {Journal of Computational and Applied Mathematics},
  Pages		= {77-85},
  Title		= {A bidimensional stability result for aluminium
		  electrolytic cells},
  Volume	= {38},
  Year		= {1991}
}

###Article{	  descloux-jaccard-romerio-91,
  Annote	= {mhd, aluminium, long time, stability},
  Author	= {Descloux, J. and Jaccard, Y. and Romerio, M.V.},
  code		= {mhd23},
  Journal	= {Journal of Computational and Applied Mathematics},
  Pages		= {77-85},
  Title		= {A bidimensional stability result for aluminium
		  electrolytic cells},
  Volume	= {38},
  Year		= {1991}
}

@Article{	  desjardins,
  Author	= {Desjardins, B.},
  Journal	= {Arch. Rat. Mech. Anal.},
  Pages		= {135-158},
  Title		= {Regularity results for the two dimensional multiphase
		  viscous flows},
  Volume	= {137},
  Year		= {1997}
}

###Article{	  desjardins,
  Author	= {Desjardins, B.},
  Journal	= {Arch. Rat. Mech. Anal.},
  Pages		= {135-158},
  Title		= {Regularity results for the two dimensional multiphase
		  viscous flows},
  Volume	= {137},
  Year		= {1997}
}

@Article{	  desjardins-le-bris-98,
  Author	= {Desjardins, B. and Le Bris, C.},
  Journal	= {Differential Integral Equations},
  Number	= {3},
  Pages		= {377--394},
  Title		= {Remarks on a nonhomogeneous model of
		  magnetohydrodynamics},
  Volume	= {11},
  Year		= {1998}
}

###Article{	  desjardins-le-bris-98,
  Author	= {Desjardins, B. and Le Bris, C.},
  Journal	= {Differential Integral Equations},
  Number	= {3},
  Pages		= {377--394},
  Title		= {Remarks on a nonhomogeneous model of
		  magnetohydrodynamics},
  Volume	= {11},
  Year		= {1998}
}

@Article{	  devault_blood_2008,
  Title		= {Blood Flow in the Circle of {{Willis}}: Modeling and
		  Calibration},
  Volume	= {7},
  ShortTitle	= {Blood Flow in the Circle of {{Willis}}},
  Number	= {2},
  JournalTitle	= {Multiscale Modeling \& Simulation},
  Year		= {2008},
  Pages		= {888--909},
  Author	= {DeVault, Kristen and Gremaud, Pierre A. and Novak, Vera
		  and Olufsen, Mette S. and Vernieres, Guillaume and Zhao,
		  Peng}
}

@PhdThesis{	  dominguez-82,
  Annote	= {mhd, finite element},
  Author	= {Dominguez de la Rasilla, J.-M.},
  code		= {mhd30},
  School	= {Universit{\'e} de Paris VI},
  Title		= {Etude des {\'e}quations de la magn{\'e}tohydrodynamique
		  stationnaires et de leur approximation par {\'e}l{\'e}ments
		  finis},
  Type		= {Th{\`e}se},
  Year		= {1982}
}

###PhdThesis{	  dominguez-82,
  Annote	= {mhd, finite element},
  Author	= {Dominguez de la Rasilla, J.-M.},
  code		= {mhd30},
  School	= {Universit{\'e} de Paris VI},
  Title		= {Etude des {\'e}quations de la magn{\'e}tohydrodynamique
		  stationnaires et de leur approximation par {\'e}l{\'e}ments
		  finis},
  Type		= {Th{\`e}se},
  Year		= {1982}
}

@Article{	  donati2015non,
  Title		= {Non-invasive pressure difference estimation from
		  {PC}-{MRI} using the work-energy equation},
  Author	= {Donati, Fabrizio and Figueroa, C Alberto and Smith,
		  Nicolas P and Lamata, Pablo and Nordsletten, David A},
  Journal	= {Medical Image Analysis},
  Volume	= {26},
  Number	= {1},
  Pages		= {159--172},
  Year		= {2015},
  Publisher	= {Elsevier}
}

###Article{	  donati2015non,
  Title		= {Non-invasive pressure difference estimation from
		  {PC}-{MRI} using the work-energy equation},
  Author	= {Donati, Fabrizio and Figueroa, C Alberto and Smith,
		  Nicolas P and Lamata, Pablo and Nordsletten, David A},
  Journal	= {Medical Image Analysis},
  Volume	= {26},
  Number	= {1},
  Pages		= {159--172},
  Year		= {2015},
  Publisher	= {Elsevier}
}

@Article{	  donati2016circulation,
  Title		= {Beyond Bernoulli: improving the accuracy and precision of
		  non-invasive estimation of peak pressure},
  Author	= {Donati, F. and Myerson, S. and Bissel, M. and Smith, N.
		  and Neubauer, S. and Monaghan, M. and Nordsletten, D.
		  Lamata, P.},
  Journal	= {Circulation Cardiovascular Imaging},
  Year		= {2016},
  Note		= {To appear}
}

@Article{	  donati_beyond_2017,
  langid	= {english},
  Title		= {Beyond {{Bernoulli}}: {{Improving}} the {{Accuracy}} and
		  {{Precision}} of {{Noninvasive Estimation}} of {{Peak
		  Pressure Drops}}},
  Volume	= {10},
  ISSN		= {1941-9651, 1942-0080},
  URL		= {https://www.ahajournals.org/doi/10.1161/CIRCIMAGING.116.005207},
  DOI		= {10.1161/CIRCIMAGING.116.005207},
  ShortTitle	= {Beyond {{Bernoulli}}},
  Number	= {1},
  JournalTitle	= {Circulation: Cardiovascular Imaging},
  URLDate	= {2019-02-18},
  Date		= {2017-01},
  Author	= {Donati, Fabrizio and Myerson, Saul and Bissell, Malenka M.
		  and Smith, Nicolas P. and Neubauer, Stefan and Monaghan,
		  Mark J. and Nordsletten, David A. and Lamata, Pablo}
}

###Article{	  donati_beyond_2017,
  langid	= {english},
  Title		= {Beyond {{Bernoulli}}: {{Improving}} the {{Accuracy}} and
		  {{Precision}} of {{Noninvasive Estimation}} of {{Peak
		  Pressure Drops}}},
  Volume	= {10},
  ISSN		= {1941-9651, 1942-0080},
  URL		= {https://www.ahajournals.org/doi/10.1161/CIRCIMAGING.116.005207},
  DOI		= {10.1161/CIRCIMAGING.116.005207},
  ShortTitle	= {Beyond {{Bernoulli}}},
  Number	= {1},
  JournalTitle	= {Circulation: Cardiovascular Imaging},
  URLDate	= {2019-02-18},
  Year		= {2017-01},
  Author	= {Donati, Fabrizio and Myerson, Saul and Bissell, Malenka M.
		  and Smith, Nicolas P. and Neubauer, Stefan and Monaghan,
		  Mark J. and Nordsletten, David A. and Lamata, Pablo}
}

@Article{	  donati_non-invasive_2015,
  Title		= {Non-Invasive Pressure Difference Estimation from
		  {{PC}}-{{MRI}} Using the Work-Energy Equation},
  Volume	= {26},
  URL		= {http://www.sciencedirect.com/science/article/pii/S1361841515001371},
  Number	= {1},
  JournalTitle	= {Medical image analysis},
  URLDate	= {2016-11-23},
  Year		= {2015},
  Pages		= {159--172},
  Author	= {Donati, Fabrizio and Figueroa, C. Alberto and Smith,
		  Nicolas P. and Lamata, Pablo and Nordsletten, David A.}
}

@Article{	  donea-giuliani-halleux-82,
  Author	= {Don{\'e}a, J. and Giuliani, S. and Halleux, J. P.},
  Journal	= {Comp. Meth. Appl. Mech. Engng.},
  Pages		= {689--723},
  Title		= {An arbitrary {Lagrangian-Eulerian} finite element method
		  for transient dynamic fluid-structure interactions},
  Year		= {1982}
}

###Article{	  donea-giuliani-halleux-82,
  Author	= {Don{\'e}a, J. and Giuliani, S. and Halleux, J. P.},
  Journal	= {Comp. Meth. Appl. Mech. Engng.},
  Pages		= {689--723},
  Title		= {An arbitrary {Lagrangian-Eulerian} finite element method
		  for transient dynamic fluid-structure interactions},
  Year		= {1982}
}

@Unpublished{	  doorly-sherwin-franke-peiro-01,
  Author	= {Doorly, D.J. and Sherwin, S.J. and Franke, P.T. and
		  Peir\'{o}, J.},
  Note		= {Special issue on CFD in Computer Methods in Biomechanics
		  and Biomedical Engineering},
  Title		= {Vortical flow structure identification and flow transport
		  in arteries},
  Year		= {2001}
}

###Unpublished{	  doorly-sherwin-franke-peiro-01,
  Author	= {Doorly, D.J. and Sherwin, S.J. and Franke, P.T. and
		  Peir\'{o}, J.},
  Note		= {Special issue on CFD in Computer Methods in Biomechanics
		  and Biomedical Engineering},
  Title		= {Vortical flow structure identification and flow transport
		  in arteries},
  Year		= {2001}
}

@Article{	  dorn2009nature,
  Title		= {Novel pharmacotherapies to abrogate postinfarction
		  ventricular remodeling},
  Author	= {Dorn, Gerald W},
  Journal	= {Nature Reviews Cardiology},
  Year		= {2009},
  Number	= {4},
  Pages		= {283--291},
  Volume	= {6},
  File		= {dorn09.pdf:dorn09.pdf:PDF},
  Publisher	= {Nature Publishing Group},
  timestamp	= {2015/09/20}
}

@Article{	  dou2002mrm,
  Title		= {Cardiac diffusion {MRI} without motion effects},
  Author	= {Dou, Jiangang and Reese, Timothy G. and Tseng, Wen-Yih I.
		  and Wedeen, Van J.},
  Journal	= {Magnetic Resonance in Medicine},
  Year		= {2002},
  Month		= jul,
  Number	= {1},
  Pages		= {105--114},
  Volume	= {48},
  Abstract	= {We present a method for diffusion tensor MRI in the
		  beating heart that is insensitive to cardiac motion and
		  strain. Using a stimulated echo pulse sequence with two
		  electrocardiogram (ECG) triggers, diffusion-encoding
		  bipolar gradient pulses are applied at identical phases in
		  consecutive cardiac cycles. In this experiment, diffusion
		  is encoded at a single phase in the cardiac cycle of less
		  than 30 ms in duration. This encoding produces no phase
		  shifts for periodic motion and is independent of
		  intervening strains. Studies in a gel phantom with cyclic
		  deformation confirm that by using this sequence we can map
		  the diffusion tensor free of effects of cyclic motion. In
		  normal human subjects, myocardial diffusion eigenvalues
		  measured with the present method showed no significant
		  change between acquisitions encoded at maximum contractile
		  velocity (peak) vs. at myocardial standstill (end-systole),
		  demonstrating motion independence of in vivo diffusion
		  measurements. Diffusion tensor images acquired with the
		  present method agree with registered data acquired with a
		  previous cardiac diffusion MRI method that was shown to be
		  valid in the normal heart, strongly supporting the validity
		  of MRI diffusion measurement in the beating heart.
		  Myocardial sheet and fiber dynamics measured during systole
		  showed that normal human myocardial sheet orientations tilt
		  toward the radial during systole, and fiber orientations
		  tilt toward the longitudinal, in qualitative agreement with
		  previous invasive studies in canines. These results
		  demonstrate the technique's ability to measure myocardial
		  diffusion accurately at any point in the cardiac cycle free
		  of measurable motion effect, as if the heart were frozen at
		  the point of acquisition. Magn Reson Med
		  48:105{\textendash}114, 2002. {\textcopyright} 2002
		  Wiley-Liss, Inc.},
  copyright	= {Copyright {\textcopyright} 2002 Wiley-Liss, Inc.},
  DOI		= {10.1002/mrm.10188},
  ISSN		= {1522-2594},
  Language	= {en},
  owner		= {david},
  timestamp	= {2015-05-28 17:38:21},
  URL		= {http://onlinelibrary.wiley.com/doi/10.1002/mrm.10188/abstract},
  URLDate	= {2015-05-28}
}

@Article{	  douglas-wang-89,
  Author	= {Douglas, J. and Wang, J.},
  Journal	= {Math. of Comp.},
  Number	= {186},
  Pages		= {495-508},
  Title		= {An absolutely stabilized finite element method for the
		  {Stokes} problem},
  Volume	= {52},
  Year		= {1989}
}

###Article{	  douglas-wang-89,
  Author	= {Douglas, J. and Wang, J.},
  Journal	= {Math. of Comp.},
  Number	= {186},
  Pages		= {495-508},
  Title		= {An absolutely stabilized finite element method for the
		  {Stokes} problem},
  Volume	= {52},
  Year		= {1989}
}

@Article{	  douglas20161,
  Title		= {1-year outcomes of FFRCT-guided care in patients with
		  suspected coronary disease: the PLATFORM study},
  Author	= {Douglas, Pamela S and De Bruyne, Bernard and Pontone,
		  Gianluca and Patel, Manesh R and Norgaard, Bjarne L and
		  Byrne, Robert A and Curzen, Nick and Purcell, Ian and
		  Gutberlet, Matthias and Rioufol, Gilles and others},
  Journal	= {Journal of the American College of Cardiology},
  Volume	= {68},
  Number	= {5},
  Pages		= {435--445},
  Year		= {2016},
  Publisher	= {Journal of the American College of Cardiology}
}

@Article{	  doyley-12,
  Author	= {Doyley, M.M. },
  Title		= {Model-based elastography: a survey of approaches to the
		  inverse elasticity problem},
  Journal	= {Physics in Medicine and Biology},
  Volume	= {57},
  Number	= {3},
  Pages		= {R35},
  Year		= {2012},
  Abstract	= {Elastography is emerging as an imaging modality that can
		  distinguish normal versus diseased tissues via their
		  biomechanical properties. This paper reviews current
		  approaches to elastography in three areasâquasi-static,
		  harmonic and transientâand describes inversion schemes
		  for each elastographic imaging approach. Approaches include
		  first-order approximation methods; direct and iterative
		  inversion schemes for linear elastic; isotropic materials
		  and advanced reconstruction methods for recovering
		  parameters that characterize complex mechanical behavior.
		  The paper's objective is to document efforts to develop
		  elastography within the framework of solving an inverse
		  problem, so that elastography may provide reliable
		  estimates of shear modulus and other mechanical parameters.
		  We discuss issues that must be addressed if model-based
		  elastography is to become the prevailing approach to
		  quasi-static, harmonic and transient elastography: (1)
		  developing practical techniques to transform the ill-posed
		  problem with a well-posed one; (2) devising better forward
		  models to capture the complex mechanical behavior of soft
		  tissues and (3) developing better test procedures to
		  evaluate the performance of modulus elastograms.}
}

###Article{	  doyley-12,
  Author	= {Doyley, M.M. },
  Title		= {Model-based elastography: a survey of approaches to the
		  inverse elasticity problem},
  Journal	= {Physics in Medicine and Biology},
  Volume	= {57},
  Number	= {3},
  Pages		= {R35},
  URL		= {http://stacks.iop.org/0031-9155/57/i=3/a=R35},
  Year		= {2012},
  Abstract	= {Elastography is emerging as an imaging modality that can
		  distinguish normal versus diseased tissues via their
		  biomechanical properties. This paper reviews current
		  approaches to elastography in three areasâquasi-static,
		  harmonic and transientâand describes inversion schemes
		  for each elastographic imaging approach. Approaches include
		  first-order approximation methods; direct and iterative
		  inversion schemes for linear elastic; isotropic materials
		  and advanced reconstruction methods for recovering
		  parameters that characterize complex mechanical behavior.
		  The paper's objective is to document efforts to develop
		  elastography within the framework of solving an inverse
		  problem, so that elastography may provide reliable
		  estimates of shear modulus and other mechanical parameters.
		  We discuss issues that must be addressed if model-based
		  elastography is to become the prevailing approach to
		  quasi-static, harmonic and transient elastography: (1)
		  developing practical techniques to transform the ill-posed
		  problem with a well-posed one; (2) devising better forward
		  models to capture the complex mechanical behavior of soft
		  tissues and (3) developing better test procedures to
		  evaluate the performance of modulus elastograms.}
}

@Article{	  draney-taylor-etal-04,
  Author	= {Draney, M.T. and Arko, F.R. and Alley, M.T. and Markl, M.
		  and Herfkens, R.J. and Pelc, R.J. and Zarins, C.K. and
		  Taylor, C.A.},
  date-added	= {2009-03-10 12:06:21 -0700},
  date-modified	= {2009-03-10 12:07:39 -0700},
  Journal	= {{Magnetic Resonance in Medicine}},
  Pages		= {286-295},
  Title		= {Quantification of Vessel Wall Motion and Cyclic Strain
		  Using Cine Phase Contrast MRI: In Vivo Validation in the
		  Porcine Aorta},
  Volume	= {52},
  Year		= {2004}
}

###Article{	  draney-taylor-etal-04,
  Author	= {Draney, M.T. and Arko, F.R. and Alley, M.T. and Markl, M.
		  and Herfkens, R.J. and Pelc, R.J. and Zarins, C.K. and
		  Taylor, C.A.},
  date-added	= {2009-03-10 12:06:21 -0700},
  date-modified	= {2009-03-10 12:07:39 -0700},
  Journal	= {Magnetic Resonance in Medicine},
  Pages		= {286-295},
  Title		= {Quantification of Vessel Wall Motion and Cyclic Strain
		  Using Cine Phase Contrast MRI: In Vivo Validation in the
		  Porcine Aorta},
  Volume	= {52},
  Year		= {2004}
}

@Article{	  durlofsky-brady-87,
  Author	= {Durlofsky, L. and Brady, J-F.},
  code		= {por9},
  Journal	= {Phys. Fluid},
  Number	= {11},
  Pages		= {3329-3341},
  Title		= {Analysis of the Brinkman equation as a model for flow in
		  porous media},
  Volume	= {30},
  Year		= {1987}
}

@Book{		  duvaut-lions-72,
  Author	= {Duvaut, G. and Lions, J.-L.},
  Publisher	= {Dunod},
  Title		= {Les in{\'e}quations en m{\'e}canique et en physique},
  Year		= {1972}
}

###Book{	  duvaut-lions-72,
  Author	= {Duvaut, G. and Lions, J.-L.},
  Publisher	= {Dunod},
  Title		= {Les in{\'e}quations en m{\'e}canique et en physique},
  Year		= {1972}
}

@Article{	  duvaut-lions-72b,
  Annote	= {mhd, bingham, existence},
  Author	= {Duvaut, G. and Lions, J.-L.},
  code		= {mhd15},
  Journal	= {Arch. Rat. Mech. Anal.},
  Pages		= {241-279},
  Title		= {In{\'e}quations en thermo{\'e}lasticit{\'e} et
		  magn{\'e}tohydrodynamique},
  Volume	= {46},
  Year		= {1972}
}

###Article{	  duvaut-lions-72b,
  Annote	= {mhd, bingham, existence},
  Author	= {Duvaut, G. and Lions, J.-L.},
  code		= {mhd15},
  Journal	= {Arch. Rat. Mech. Anal.},
  Pages		= {241-279},
  Title		= {In{\'e}quations en thermo{\'e}lasticit{\'e} et
		  magn{\'e}tohydrodynamique},
  Volume	= {46},
  Year		= {1972}
}

@InProceedings{	  dwight-10,
  Title		= {Bayesian inference for data assimilation using
		  Least-Squares Finite Element methods},
  Author	= {Dwight, R.P.},
  BookTitle	= {IOP Conference Series: Materials Science and Engineering},
  Volume	= {10},
  Number	= {1},
  Pages		= {012224},
  Year		= {2010},
  Organization	= {IOP Publishing}
}

###InProceedings{ dwight-10,
  Title		= {Bayesian inference for data assimilation using
		  Least-Squares Finite Element methods},
  Author	= {Dwight, R.P.},
  BookTitle	= {IOP Conference Series: Materials Science and Engineering},
  Volume	= {10},
  Number	= {1},
  Pages		= {012224},
  Year		= {2010},
  Organization	= {IOP Publishing}
}

@Article{	  dyverfeldt20154d,
  Title		= {4{D} flow cardiovascular magnetic resonance consensus
		  statement},
  Author	= {Dyverfeldt, Petter and Bissell, Malenka and Barker, Alex J
		  and Bolger, Ann F and Carlh{\"a}ll, Carl-Johan and Ebbers,
		  Tino and Francios, Christopher J and Frydrychowicz, Alex
		  and Geiger, Julia and Giese, Daniel and others},
  Journal	= {Journal of Cardiovascular Magnetic Resonance},
  Volume	= {17},
  Number	= {1},
  Pages		= {1--19},
  Year		= {2015},
  Publisher	= {Springer}
}

@Article{	  dyverfeldt2015consensus4dflow,
  Title		= {4{D} flow cardiovascular magnetic resonance consensus
		  statement},
  Author	= {Dyverfeldt, Petter and Bissell, Malenka and Barker, Alex J
		  and Bolger, Ann F and Carlh{\"a}ll, Carl-Johan and Ebbers,
		  Tino and Francios, Christopher J and Frydrychowicz, Alex
		  and Geiger, Julia and Giese, Daniel and others},
  Journal	= {Journal of Cardiovascular Magnetic Resonance},
  Volume	= {17},
  Number	= {1},
  Pages		= {1--19},
  Year		= {2015},
  Publisher	= {Springer}
}

@Article{	  dyverfeldt_4d_2015,
  Title		= {{{4D}} Flow Cardiovascular Magnetic Resonance Consensus
		  Statement},
  Author	= {Dyverfeldt, Petter and Bissell, Malenka and Barker, Alex
		  J. and Bolger, Ann F. and Carlh{\"a}ll, Carl-Johan and
		  Ebbers, Tino and Francios, Christopher J. and
		  Frydrychowicz, Alex and Geiger, Julia and Giese, Daniel and
		  Hope, Michael D. and Kilner, Philip J. and Kozerke,
		  Sebastian and Myerson, Saul and Neubauer, Stefan and
		  Wieben, Oliver and Markl, Michael},
  Year		= {2015},
  Month		= dec,
  Volume	= {17},
  ISSN		= {1532-429X},
  DOI		= {10.1186/s12968-015-0174-5},
  Journal	= {J Cardiovasc Magn Reson},
  Language	= {en},
  Number	= {1}
}

###Article{	  dyverfeldt_4d_2015,
  Title		= {4D flow cardiovascular magnetic resonance consensus
		  statement},
  Author	= {Dyverfeldt, Petter and Bissell, Malenka and Barker, Alex J
		  and Bolger, Ann F and Carlh{\"a}ll, Carl-Johan and Ebbers,
		  Tino and Francios, Christopher J and Frydrychowicz, Alex
		  and Geiger, Julia and Giese, Daniel and others},
  Journal	= {Journal of Cardiovascular Magnetic Resonance},
  Volume	= {17},
  Number	= {1},
  Pages		= {72},
  Year		= {2015},
  Publisher	= {Springer}
}

@Article{	  dyverfeldt_magnetic_2013,
  Title		= {Magnetic Resonance Measurement of Turbulent Kinetic Energy
		  for the Estimation of Irreversible Pressure Loss in Aortic
		  Stenosis},
  Volume	= {6},
  Number	= {1},
  JournalTitle	= {JACC: Cardiovascular Imaging},
  Year		= {2013},
  Pages		= {64--71},
  Author	= {Dyverfeldt, Petter and Hope, Michael D. and Tseng, Elaine
		  E. and Saloner, David}
}

@Article{	  dyverfeldt_quantification_2006,
  langid	= {english},
  Title		= {Quantification of Intravoxel Velocity Standard Deviation
		  and Turbulence Intensity by Generalizing Phase-Contrast
		  {{MRI}}},
  Volume	= {56},
  ISSN		= {1522-2594},
  URL		= {http://onlinelibrary.wiley.com/doi/10.1002/mrm.21022/abstract},
  DOI		= {10.1002/mrm.21022},
  Abstract	= {Turbulent flow, characterized by velocity fluctuations, is
		  a contributing factor to the pathogenesis of several
		  cardiovascular diseases. A clinical noninvasive tool for
		  assessing turbulence is lacking, however. It is well known
		  that the occurrence of multiple spin velocities within a
		  voxel during the influence of a magnetic gradient moment
		  causes signal loss in phase-contrast magnetic resonance
		  imaging (PC-MRI). In this paper a mathematical derivation
		  of an expression for computing the standard deviation (SD)
		  of the blood flow velocity distribution within a voxel is
		  presented. The SD is obtained from the magnitude of PC-MRI
		  signals acquired with different first gradient moments. By
		  exploiting the relation between the SD and turbulence
		  intensity (TI), this method allows for quantitative studies
		  of turbulence. For validation, the TI in an in vitro flow
		  phantom was quantified, and the results compared favorably
		  with previously published laser Doppler anemometry (LDA)
		  results. This method has the potential to become an
		  important tool for the noninvasive assessment of turbulence
		  in the arterial tree. Magn Reson Med, 2006. Â© 2006
		  Wiley-Liss, Inc.},
  Number	= {4},
  JournalTitle	= {Magnetic Resonance in Medicine},
  ShortJournal	= {Magn. Reson. Med.},
  URLDate	= {2017-10-12},
  Year		= {2006-10-01},
  Pages		= {850-858},
  Author	= {Dyverfeldt, Petter and Sigfridsson, Andreas and Kvitting,
		  John-Peder Escobar and Ebbers, Tino}
}

@Article{	  ebbers2001mrm,
  Title		= {Estimation of relative cardiovascular pressures using
		  time-resolved three-dimensional phase contrast {MRI}},
  Author	= {Ebbers, Tino and Wigstr{\"o}m, Lars and Bolger, Ann F and
		  Engvall, Jan and Karlsson, Matts},
  Journal	= {Magnetic resonance in medicine},
  Volume	= {45},
  Number	= {5},
  Pages		= {872--879},
  Year		= {2001},
  Publisher	= {Wiley Online Library}
}

###Article{	  ebbers2001mrm,
  Title		= {Estimation of relative cardiovascular pressures using
		  time-resolved three-dimensional phase contrast {MRI}},
  Author	= {Ebbers, Tino and Wigstr{\"o}m, Lars and Bolger, Ann F and
		  Engvall, Jan and Karlsson, Matts},
  Journal	= {Magnetic resonance in medicine},
  Volume	= {45},
  Number	= {5},
  Pages		= {872--879},
  Year		= {2001},
  Publisher	= {Wiley Online Library}
}

@Article{	  ebbers2009jmri,
  Title		= {Improving computation of cardiovascular relative pressure
		  fields from velocity {MRI}},
  Author	= {Ebbers, Tino and Farneb{\"a}ck, Gunnar},
  Journal	= {Journal of Magnetic Resonance Imaging},
  Volume	= {30},
  Number	= {1},
  Pages		= {54--61},
  Year		= {2009},
  Publisher	= {Wiley Online Library}
}

###Article{	  ebbers2009jmri,
  Title		= {Improving computation of cardiovascular relative pressure
		  fields from velocity {MRI}},
  Author	= {Ebbers, Tino and Farneb{\"a}ck, Gunnar},
  Journal	= {Journal of Magnetic Resonance Imaging},
  Volume	= {30},
  Number	= {1},
  Pages		= {54--61},
  Year		= {2009},
  Publisher	= {Wiley Online Library}
}

@Article{	  ebbers_estimation_2001,
  Title		= {Estimation of Relative Cardiovascular Pressures Using
		  Time-Resolved Three-Dimensional Phase Contrast {{MRI}}},
  Author	= {Ebbers, Tino and Wigstr{\"o}m, Lars and Bolger, Ann F. and
		  Engvall, Jan and Karlsson, Matts},
  Year		= {2001},
  Volume	= {45},
  Pages		= {872--879},
  Journal	= {Magnetic Resonance in Medicine: An Official Journal of the
		  International Society for Magnetic Resonance in Medicine},
  Number	= {5}
}

###Article{	  ebbers_estimation_2001,
  Title		= {Estimation of Relative Cardiovascular Pressures Using
		  Time-Resolved Three-Dimensional Phase Contrast {{MRI}}},
  Volume	= {45},
  Number	= {5},
  JournalTitle	= {Magnetic Resonance in Medicine: An Official Journal of the
		  International Society for Magnetic Resonance in Medicine},
  Year		= {2001},
  Pages		= {872--879},
  Author	= {Ebbers, Tino and WigstrÃ¶m, Lars and Bolger, Ann F. and
		  Engvall, Jan and Karlsson, Matts}
}

@Article{	  ebbers_improving_2009,
  Title		= {Improving Computation of Cardiovascular Relative Pressure
		  Fields from Velocity {{MRI}}},
  Author	= {Ebbers, Tino and Farneb{\"a}ck, Gunnar},
  Year		= {2009},
  Volume	= {30},
  Pages		= {54--61},
  Journal	= {Journal of Magnetic Resonance Imaging},
  Number	= {1}
}

@Article{	  ebbers_noninvasive_2002,
  Title		= {Noninvasive Measurement of Time-Varying Three-Dimensional
		  Relative Pressure Fields within the Human Heart},
  Volume	= {124},
  URL		= {http://biomechanical.asmedigitalcollection.asme.org/data/Journals/JBENDY/26248/288_1.pdf},
  Number	= {3},
  JournalTitle	= {Journal of biomechanical engineering},
  URLDate	= {2015-07-24},
  Date		= {2002},
  Pages		= {288--293},
  Author	= {Ebbers, Tino and Wigstrom, L. and Bolger, A. F. and
		  Wranne, Bengt and Karlsson, Matts}
}

###Article{	  ebbers_noninvasive_2002,
  Title		= {Noninvasive Measurement of Time-Varying Three-Dimensional
		  Relative Pressure Fields within the Human Heart},
  Volume	= {124},
  URL		= {http://biomechanical.asmedigitalcollection.asme.org/data/Journals/JBENDY/26248/288_1.pdf},
  Number	= {3},
  JournalTitle	= {Journal of biomechanical engineering},
  URLDate	= {2015-07-24},
  Year		= {2002},
  Pages		= {288--293},
  Author	= {Ebbers, Tino and Wigstrom, L. and Bolger, A. F. and
		  Wranne, Bengt and Karlsson, Matts}
}

@InBook{	  engeldinger-62,
  Annote	= {mhd, duct flow},
  Author	= {Engeldinger, P.},
  code		= {mhd18},
  Pages		= {85-120},
  Publisher	= {Eyrolles},
  Series	= {Collection du Laboratoire National d'Hydraulique},
  Title		= {Turbulence et perte de charge dans les {\'e}coulements
		  conducteurs en conduites avec champ magn{\'e}tique
		  transversal},
  Year		= {1962}
}

###InBook{	  engeldinger-62,
  Annote	= {mhd, duct flow},
  Author	= {Engeldinger, P.},
  code		= {mhd18},
  Pages		= {85-120},
  Publisher	= {Eyrolles},
  Series	= {Collection du Laboratoire National d'Hydraulique},
  Title		= {Turbulence et perte de charge dans les {\'e}coulements
		  conducteurs en conduites avec champ magn{\'e}tique
		  transversal},
  Year		= {1962}
}

@Article{	  engelman-sani-gresho-82,
  Author	= {Engelman, M.S. and Sani, R.L. and Gresho, P.M.},
  Journal	= {Int. J. Num. Meth. Fluids},
  Number	= {3},
  Pages		= {225--238},
  Title		= {The implementation of normal and/or tangential velocity
		  boundary conditions in finite element codes for
		  incompressible fluid flow},
  Volume	= {2},
  Year		= {1982}
}

###Article{	  engelman-sani-gresho-82,
  Author	= {Engelman, M.S. and Sani, R.L. and Gresho, P.M.},
  Journal	= {Int. J. Num. Meth. Fluids},
  Number	= {3},
  Pages		= {225--238},
  Title		= {The implementation of normal and/or tangential velocity
		  boundary conditions in finite element codes for
		  incompressible fluid flow},
  Volume	= {2},
  Year		= {1982}
}

@Article{	  ennis2008myofiber,
  Author	= {Ennis, Daniel B and Nguyen, Tom C and Riboh, Jonathan C
		  and Wigstr{\"o}m, Lars and Harrington, Katherine B and
		  Daughters, George T and Ingels, Neil B and Miller, D Craig},
  Title		= {Myofiber angle distributions in the ovine left ventricle
		  do not conform to computationally optimized predictions},
  Journal	= {Journal of Biomechanics},
  Year		= {2008},
  Volume	= {41},
  Pages		= {3219--3224},
  Number	= {15},
  Publisher	= {Elsevier}
}

@Article{	  erbel_2014_2014,
  Title		= {2014 {{ESC Guidelines}} on the Diagnosis and Treatment of
		  Aortic Diseases: {{Document}} Covering Acute and Chronic
		  Aortic Diseases of the Thoracic and Abdominal Aorta of the
		  Adult. {{The Task Force}} for the {{Diagnosis}} and
		  {{Treatment}} of {{Aortic Diseases}} of the {{European
		  Society}} of {{Cardiology}} ({{ESC}})},
  Volume	= {35},
  ShortTitle	= {2014 {{ESC Guidelines}} on the Diagnosis and Treatment of
		  Aortic Diseases},
  Number	= {41},
  JournalTitle	= {European heart journal},
  Year		= {2014},
  Pages		= {2873--2926},
  Author	= {Erbel, Raimund and Aboyans, Victor and Boileau, Catherine
		  and Bossone, Eduardo and Bartolomeo, Roberto Di and
		  Eggebrecht, Holger and Evangelista, Arturo and Falk,
		  Volkmar and Frank, Herbert}
}

@Article{	  eriksson2013mms,
  Title		= {Influence of myocardial fiber/sheet orientations on left
		  ventricular mechanical contraction},
  Author	= {Eriksson, TSE and Prassl, AJ and Plank, G and Holzapfel,
		  GA},
  Journal	= {Mathematics and Mechanics of Solids},
  Year		= {2013},
  Abstract	= {At any point in space the material properties of the
		  myocardium are characterized as orthotropic, that is, there
		  are three mutually orthogonal axes along which both
		  electrical and mechanical parameters differ. To investigate
		  the role of spatial structural heterogeneity in an
		  orthotropic material, electro-mechanically coupled models
		  of the left ventricle (LV) were used. The implemented
		  models differed in their arrangement of fibers and sheets
		  in the myocardium, but were identical otherwise: (i) a
		  generic homogeneous model, where a rule-based method was
		  applied to assign fiber and sheet orientations, and (ii) a
		  heterogeneous model, where the assignment of the
		  orthotropic tissue structure was based on experimentally
		  obtained fiber/sheet orientations. While both models
		  resulted in pressure?volume loops and metrics of global
		  mechanical function that were qualitatively and
		  quantitatively similar and matched well with experimental
		  data, the predicted deformations were strikingly different
		  between these models, particularly with regard to torsion.
		  Thus, the simulation results strongly suggest that
		  heterogeneous structure properties play an important
		  nonnegligible role in LV mechanics and, consequently,
		  should be accounted for in computational models.},
  DOI		= {10.1177/1081286513485779},
  EPrint	= {http://mms.sagepub.com/content/early/2013/05/29/1081286513485779.full.pdf+html},
  File		= {eriksson13a.pdf:eriksson13a.pdf:PDF},
  timestamp	= {2015/09/22},
  URL		= {http://mms.sagepub.com/content/early/2013/05/29/1081286513485779.abstract}
}

@Book{		  ern:guermond:04,
  Author	= {Ern, A. and Guermond, J.~L.},
  Title		= {Theory and practice of finite elements},
  Series	= {Applied Mathematical Sciences},
  Volume	= {159},
  Publisher	= {Springer-Verlag},
  Address	= {New York},
  Year		= {2004},
  Pages		= {xiv+524},
  ISBN		= {0-387-20574-8},
  mrclass	= {65-02 (65M60 65N30 74S05 76M10 78M10)},
  mrnumber	= {MR2050138 (2005d:65002)},
  mrreviewer	= {R. S. Anderssen}
}

###Book{	  ern:guermond:04,
  Author	= {Ern, A. and Guermond, J.~L.},
  Title		= {Theory and practice of finite elements},
  Series	= {Applied Mathematical Sciences},
  Volume	= {159},
  Publisher	= {Springer-Verlag},
  Address	= {New York},
  Year		= {2004},
  Pages		= {xiv+524},
  ISBN		= {0-387-20574-8},
  mrclass	= {65-02 (65M60 65N30 74S05 76M10 78M10)},
  mrnumber	= {MR2050138 (2005d:65002)},
  mrreviewer	= {R. S. Anderssen}
}

@Book{		  ernguermond04,
  Address	= {New York},
  Author	= {Ern, A. and Guermond, J.-L.},
  Publisher	= {Springer-Verlag},
  Series	= {Applied Mathematical Sciences},
  Title		= {Theory and practice of finite elements},
  Volume	= {159},
  Year		= {2004}
}

###Book{	  ernguermond04,
  Address	= {New York},
  Author	= {Ern, A. and Guermond, J.-L.},
  Publisher	= {Springer-Verlag},
  Series	= {Applied Mathematical Sciences},
  Title		= {Theory and practice of finite elements},
  Volume	= {159},
  Year		= {2004}
}

@Article{	  ervedozaz-zuazua-08,
  Author	= {Ervedoza, S. and Zuazua, E.},
  date-added	= {2009-03-10 11:44:05 -0700},
  date-modified	= {2009-03-10 11:59:10 -0700},
  Journal	= {J. Math. Pure Appl.},
  Note		= {},
  Pages		= {20--48},
  Title		= {Uniformly exponentially stable approximations for a class
		  of damped systems},
  Volume	= {91},
  Year		= {2009}
}

###Article{	  ervedozaz-zuazua-08,
  Author	= {Ervedoza, S. and Zuazua, E.},
  date-added	= {2009-03-10 11:44:05 -0700},
  date-modified	= {2009-03-10 11:59:10 -0700},
  Journal	= {J. Math. Pure Appl.},
  Note		= {},
  Pages		= {20--48},
  Title		= {Uniformly exponentially stable approximations for a class
		  of damped systems},
  Volume	= {91},
  Year		= {2009}
}

@Article{	  essig2013perfusion,
  Title		= {Perfusion MRI: the five most frequently asked technical
		  questions},
  Author	= {Essig, Marco and Shiroishi, Mark S and Nguyen, Thanh Binh
		  and Saake, Marc and Provenzale, James M and Enterline,
		  David and Anzalone, Nicoletta and D{\"o}rfler, Arnd and
		  Rovira, {\`A}lex and Wintermark, Max and others},
  Journal	= {AJR. American journal of roentgenology},
  Volume	= {200},
  Number	= {1},
  Pages		= {24},
  Year		= {2013},
  Publisher	= {NIH Public Access}
}

@Article{	  eu-pwv-10,
  Title		= {Determinants of pulse wave velocity in healthy people and
		  in the presence of cardiovascular risk factors:
		  establishing normal and reference values},
  Author	= {{The Reference Values for Arterial Stiffness'
		  Collaboration}},
  Volume	= {31},
  Number	= {},
  Journal	= {European Heart Journal},
  Publisher	= {The European Society of Cardiology},
  Year		= {2010},
  Pages		= {2338--2350}
}

###Article{	  eu-pwv-10,
  Title		= {Determinants of pulse wave velocity in healthy people and
		  in the presence of cardiovascular risk factors:
		  establishing normal and reference values},
  Author	= {{The Reference Values for Arterial Stiffness'
		  Collaboration}},
  Volume	= {31},
  Number	= {},
  Journal	= {European Heart Journal},
  Publisher	= {The European Society of Cardiology},
  Year		= {2010},
  Pages		= {2338--2350}
}

@InBook{	  evans2010pde,
  Author	= {Evans, L.C.},
  Title		= {Partial Differential Equations: Second Edition},
  Year		= {2010},
  Publisher	= {AMS. Graduate Series in Mathematics},
  Volume	= {19.R}
}

@Book{		  evensen-09,
  Title		= {Data assimilation: the ensemble Kalman filter},
  Author	= {Evensen, G.},
  Year		= {2009},
  Publisher	= {Springer Verlag}
}

###Book{	  evensen-09,
  Title		= {Data assimilation: the ensemble Kalman filter},
  Author	= {Evensen, G.},
  Year		= {2009},
  Publisher	= {Springer Verlag}
}

@Book{		  evensen_data_2009,
  langid	= {english},
  Title		= {Data {{Assimilation}}: {{The Ensemble Kalman Filter}}},
  ISBN		= {978-3-642-03711-5},
  ShortTitle	= {Data {{Assimilation}}},
  Abstract	= {Data Assimilation comprehensively covers data assimilation
		  and inverse methods, including both traditional state
		  estimation and parameter estimation. This text and
		  reference focuses on various popular data assimilation
		  methods, such as weak and strong constraint variational
		  methods and ensemble filters and smoothers. It is
		  demonstrated how the different methods can be derived from
		  a common theoretical basis, as well as how they differ
		  and/or are related to each other, and which properties
		  characterize them, using several examples. Rather than
		  emphasize a particular discipline such as oceanography or
		  meteorology, it presents the mathematical framework and
		  derivations in a way which is common for any discipline
		  where dynamics is merged with measurements. The mathematics
		  level is modest, although it requires knowledge of basic
		  spatial statistics, Bayesian statistics, and calculus of
		  variations. Readers will also appreciate the introduction
		  to the mathematical methods used and detailed derivations,
		  which should be easy to follow, are given throughout the
		  book. The codes used in several of the data assimilation
		  experiments are available on a web page. In particular,
		  this webpage contains a complete ensemble Kalman filter
		  assimilation system, which forms an ideal starting point
		  for a user who wants to implement the ensemble Kalman
		  filter with his/her own dynamical model. The focus on
		  ensemble methods, such as the ensemble Kalman filter and
		  smoother, also makes it a solid reference to the
		  derivation, implementation and application of such
		  techniques. Much new material, in particular related to the
		  formulation and solution of combined parameter and state
		  estimation problems and the general properties of the
		  ensemble algorithms, is available here for the first time.
		  The 2nd edition includes a partial rewrite of Chapters 13
		  an 14, and the Appendix. In addition, there is a completely
		  new Chapter on "Spurious correlations, localization and
		  inflation", and an updated and improved sampling discussion
		  in Chap 11.},
  PageTotal	= {314},
  Publisher	= {{Springer Science \& Business Media}},
  Year		= {2009-08-17},
  Author	= {Evensen, Geir},
  EPrintType	= {googlebooks}
}

@Article{	  evensen_ensemble_2009,
  Title		= {The Ensemble {{Kalman}} Filter for Combined State and
		  Parameter Estimation},
  Volume	= {29},
  ISSN		= {1066-033X},
  DOI		= {10.1109/MCS.2009.932223},
  Abstract	= {This article provides a fundamental theoretical basis for
		  understanding EnKF and serves as a useful text for future
		  users. Data assimilation and parameter-estimation problems
		  are explained, and the concept of joint parameter and state
		  estimation, which can be solved using ensemble methods, is
		  presented. KF and EKF are briefly discussed before
		  introducing and deriving EnKF. Similarities and differences
		  between KF and EnKF are pointed out. The benefits of using
		  EnKF with high-dimensional and highly nonlinear dynamical
		  models are illustrated by examples. EnKF and EnKS are also
		  derived from Bayes theorem, using a probabilistic approach.
		  The derivation is based on the assumption that measurement
		  errors are independent in time and the model represents a
		  Markov process, which allows for Bayes theorem to be
		  written in a recursive form, where measurements are
		  processed sequentially in time. The practical
		  implementation of the analysis scheme isdiscussed, and it
		  is shown that it can be computed efficiently in the space
		  spanned by the ensemble realizations. The square root
		  scheme is discussed as an alternative method that avoids
		  the perturbation of measurements. However, the square root
		  scheme has other pitfalls, and it is recommended to use the
		  symmetric square root with or without a random rotation.
		  The random rotation introduces a stochastic component to
		  the update, and the quality of the scheme may then not
		  improve compared to the original stochastic EnKF scheme
		  with perturbed measurements.},
  Number	= {3},
  JournalTitle	= {IEEE Control Systems Magazine},
  Year		= {2009-06},
  Pages		= {83-104},
  Author	= {Evensen, G.}
}

@Article{	  ewert01072005,
  Author	= {Ewert, P. and Schubert, S. and Peters, B. and
		  Abdul-Khaliq, H. and Nagdyman, N. and Lange, P.E.},
  Title		= {{The CP stent short, long, covered for the treatment of
		  aortic coarctation, stenosis of pulmonary arteries and
		  caval veins, and Fontan anastomosis in children and adults:
		  an evaluation of 60 stents in 53 patients}},
  Volume	= {91},
  Number	= {7},
  Pages		= {948-953},
  Year		= {2005},
  DOI		= {10.1136/hrt.2004.040071},
  Abstract	= {},
  Journal	= {Heart}
}

###Article{	  ewert01072005,
  Author	= {Ewert, P. and Schubert, S. and Peters, B. and
		  Abdul-Khaliq, H. and Nagdyman, N. and Lange, P.E.},
  Title		= {{The CP stent short, long, covered for the treatment of
		  aortic coarctation, stenosis of pulmonary arteries and
		  caval veins, and Fontan anastomosis in children and adults:
		  an evaluation of 60 stents in 53 patients}},
  Volume	= {91},
  Number	= {7},
  Pages		= {948-953},
  Year		= {2005},
  DOI		= {10.1136/hrt.2004.040071},
  Abstract	= {},
  URL		= {http://heart.bmj.com/content/91/7/948.abstract},
  EPrint	= {http://heart.bmj.com/content/91/7/948.full.pdf},
  Journal	= {Heart}
}

@Unpublished{	  eymard-gallouet-herbin-michel,
  Author	= {Eymard, R. and Gallou{\"e}t, T. and Herbin, R. and Michel,
		  A.},
  Title		= {Convergence of a finite volume scheme for nonlinear
		  degenerate parabolic equations}
}

###Unpublished{	  eymard-gallouet-herbin-michel,
  Author	= {Eymard, R. and Gallou{\"e}t, T. and Herbin, R. and Michel,
		  A.},
  Note		= {Preprint 2001},
  Title		= {Convergence of a finite volume scheme for nonlinear
		  degenerate parabolic equations}
}

@Article{	  falk_2017_2017,
  langid	= {english},
  Title		= {2017 {{ESC}}/{{EACTS Guidelines}} for the Management of
		  Valvular Heart Disease},
  Volume	= {52},
  ISSN		= {1010-7940},
  URL		= {https://academic.oup.com/ejcts/article/52/4/616/4095090},
  DOI		= {10.1093/ejcts/ezx324},
  Abstract	= {The Task Force for the Management of Valvular Heart
		  Disease of the European Society of Cardiology (ESC) and the
		  European Association for Cardio-Thoracic Surgery},
  Number	= {4},
  JournalTitle	= {European Journal of Cardio-Thoracic Surgery},
  ShortJournal	= {Eur J Cardiothorac Surg},
  URLDate	= {2019-01-30},
  Year		= {2017-10-01},
  Pages		= {616-664},
  Author	= {Falk, Volkmar and Baumgartner, Helmut and Bax, Jeroen J.
		  and De Bonis, Michele and Hamm, Christian and Holm, Per
		  Johan and Iung, Bernard and Lancellotti, Patrizio and
		  Lansac, Emmanuel and MuÃ±oz, Daniel Rodriguez and Rosenhek,
		  Raphael and SjÃ¶gren, Johan and Tornos Mas, Pilar and
		  Vahanian, Alec and Walther, Thomas and Wendler, Olaf and
		  Windecker, Stephan and Zamorano, Jose Luis and Roffi, Marco
		  and Alfieri, Ottavio and Agewall, Stefan and Ahlsson,
		  Anders and Barbato, Emanuele and Bueno, HÃ©ctor and Collet,
		  Jean-Philippe and Coman, Ioan Mircea and Czerny, Martin and
		  Delgado, Victoria and Fitzsimons, Donna and Folliguet,
		  Thierry and Gaemperli, Oliver and Habib, Gilbert and
		  Harringer, Wolfgang and Haude, Michael and Hindricks,
		  Gerhard and Katus, Hugo A. and Knuuti, Juhani and Kolh,
		  Philippe and Leclercq, Christophe and McDonagh, Theresa A.
		  and Piepoli, Massimo Francesco and Pierard, Luc A. and
		  Ponikowski, Piotr and Rosano, Giuseppe M. C. and
		  Ruschitzka, Frank and Shlyakhto, Evgeny and Simpson, Iain
		  A. and Sousa-Uva, Miguel and Stepinska, Janina and
		  Tarantini, Giuseppe and TchÃ©tchÃ©, Didier and Aboyans,
		  Victor}
}

@Article{	  farag2018aorticflow,
  Title		= {Aortic valve stenosis and aortic diameters determine the
		  extent of increased wall shear stress in bicuspid aortic
		  valve disease},
  Author	= {Farag, E. and Ooij, P. and Planken, N. and Dukker, K. and
		  Heer, F. and Bouma, B. and Robbers-Visser, D. and Groenink,
		  M. and Nederveen, A. and Mol, B. and Kluin, J. and
		  Boekholdt, S.},
  Journal	= {Journal of Magnetic Resonance Imaging},
  Year		= {2018},
  Publisher	= {Wiley Online Library},
  Note		= {ahead of print}
}

@Article{	  farhat-lesoinne-le-tallec-98,
  Author	= {Farhat, C. and Lesoinne, M. and Le Tallec, P.},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Pages		= {95-114},
  Title		= {Load and motion transfer algorithms for fluid/structure
		  interaction problems with non-matching discrete interfaces:
		  Momentum and energy conservation, optimal discretization
		  and application to aeroelasticity},
  Volume	= {157},
  Year		= {1998}
}

###Article{	  farhat-lesoinne-le-tallec-98,
  Author	= {Farhat, C. and Lesoinne, M. and Le Tallec, P.},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Pages		= {95-114},
  Title		= {Load and motion transfer algorithms for fluid/structure
		  interaction problems with non-matching discrete interfaces:
		  Momentum and energy conservation, optimal discretization
		  and application to aeroelasticity},
  Volume	= {157},
  Year		= {1998}
}

@InProceedings{	  farhat-lieu-07,
  Address	= {San Francisco},
  Author	= {Farhat, C. and Lieu, T.},
  BookTitle	= {Ninth U.S. National Congress on Computational Mechanics:
		  USNCCM9},
  Month		= {July 23--26},
  Title		= {A discussion of recent trends and claims pertaining to the
		  staggered solution of {F}{S}{I} problems},
  Year		= 2007
}

###InProceedings{ farhat-lieu-07,
  Address	= {San Francisco},
  Author	= {Farhat, C. and Lieu, T.},
  BookTitle	= {Ninth U.S. National Congress on Computational Mechanics:
		  USNCCM9},
  Month		= {July 23--26},
  Title		= {A discussion of recent trends and claims pertaining to the
		  staggered solution of {F}{S}{I} problems},
  Year		= 2007
}

@Article{	  farhat-van-der-zee-geuzaine,
  Author	= {Farhat, C. and van der Zee, K. and Geuzaine, Ph.},
  Journal	= {Comput. Methods Appl. Mech. Engrg. },
  Number	= {17--18},
  Pages		= {1973--2001},
  Title		= {Provably second-order time-accurate loosely-coupled
		  solution algorithms for transient nonlinear
		  aeroelasticity},
  Volume	= {195},
  Year		= {2006}
}

###Article{	  farhat-van-der-zee-geuzaine,
  Author	= {Farhat, C. and van der Zee, K. and Geuzaine, Ph.},
  Journal	= {Comput. Methods Appl. Mech. Engrg. },
  Number	= {17--18},
  Pages		= {1973--2001},
  Title		= {Provably second-order time-accurate loosely-coupled
		  solution algorithms for transient nonlinear
		  aeroelasticity},
  Volume	= {195},
  Year		= {2006}
}

@InProceedings{	  farhat-xx,
  Address	= {Salzburg, Austria},
  Author	= {Farhat, C.},
  BookTitle	= {Proceedings of the 5th International Conference on
		  Computation of Shell and Spatial Structures},
  Editor	= {Ramm, E. and Wall, W.A. and Bletzinger, K.U. and Bischoff,
		  M.},
  Month		= {June 1-4},
  Title		= {On the numerical stability of a class of loosely-coupled,
		  higher-order, fluid/structure solution algorithms},
  Year		= {2005}
}

###InProceedings{ farhat-xx,
  Address	= {Salzburg, Austria},
  Author	= {Farhat, C.},
  BookTitle	= {Proceedings of the 5th International Conference on
		  Computation of Shell and Spatial Structures},
  Editor	= {Ramm, E. and Wall, W.A. and Bletzinger, K.U. and Bischoff,
		  M.},
  Month		= {June 1-4},
  Title		= {On the numerical stability of a class of loosely-coupled,
		  higher-order, fluid/structure solution algorithms},
  Year		= {2005}
}

@Article{	  farzaneh2018inverse,
  Title		= {Inverse identification of local stiffness across ascending
		  thoracic aortic aneurysms},
  Author	= {Farzaneh, Solmaz and Trabelsi, Olfa and Avril,
		  St{\'e}phane},
  Journal	= {Biomechanics and modeling in mechanobiology},
  Pages		= {1--17},
  Year		= {2018},
  Publisher	= {Springer}
}

@Book{		  fattouch2018advances,
  Title		= {Advances in Treatments for Aortic Valve and Root
		  Diseases},
  Author	= {Fattouch, K. and Lancellotti, P. and Vannan, M. and
		  Speziale, G.},
  Year		= {2018},
  Publisher	= {Springer},
  Note		= {doi.org/10.1007/978-3-319-66483-5}
}

@Article{	  fedele2017patient,
  Title		= {A patient-specific aortic valve model based on moving
		  resistive immersed implicit surfaces},
  Author	= {Fedele, M. and Faggiano, E. and Ded{\`e}, L. and
		  Quarteroni, A.},
  Journal	= {Biomechanics and modeling in mechanobiology},
  Volume	= {16},
  Number	= {5},
  Pages		= {1779--1803},
  Year		= {2017},
  Publisher	= {Springer}
}

@Article{	  federau2014nmrbiomed,
  Title		= {Increased brain perfusion contrast with T 2 -prepared
		  intravoxel incoherent motion (T2prep IVIM) {MRI}},
  Author	= {Federau, Christian and O'Brien, Kieran},
  Journal	= {NMR in Biomedicine},
  Year		= {2015},
  Pages		= {9-16},
  Volume	= {28},
  DOI		= {10.1002/nbm.3223},
  File		= {:Federau2014NMRBIOMED.pdf:PDF},
  ISSN		= {0952-3480},
  Publisher	= {Wiley-Blackwell},
  URL		= {http://dx.doi.org/10.1002/nbm.3223}
}

@Article{	  felipe2016recovering,
  Title		= {Recovering Latent Signals from a Mixture of Measurements
		  using a Gaussian Process Prior},
  Author	= {Felipe Tobar and Gonzalo Rios and Tom{\'a}s Valdivia and
		  Pablo Guerrero},
  Journal	= {IEEE Signal Processing Letters},
  Year		= {2016}
}

@InProceedings{	  felippa-05,
  Author	= {Felippa, C.A.},
  BookTitle	= {5th international Conference on Computational of Shell \&
		  Spatial Structures},
  Organization	= {IASS-IACM},
  Title		= {Underwater shock on stiffened shells: the source of
		  {Staggered Solution Procedure}},
  Year		= {2005}
}

###InProceedings{ felippa-05,
  Author	= {Felippa, C.A.},
  BookTitle	= {5th international Conference on Computational of Shell \&
		  Spatial Structures},
  Organization	= {IASS-IACM},
  Title		= {Underwater shock on stiffened shells: the source of
		  {Staggered Solution Procedure}},
  Year		= {2005}
}

@Article{	  felippa-deruntz-84,
  Author	= {Felippa, C.A. and Deruntz, J.A.},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Number	= {3},
  Pages		= {297--337},
  Title		= {Finite element analysis of shock-induced hull cavitation},
  Volume	= {44},
  Year		= {1984}
}

###Article{	  felippa-deruntz-84,
  Author	= {Felippa, C.A. and Deruntz, J.A.},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Number	= {3},
  Pages		= {297--337},
  Title		= {Finite element analysis of shock-induced hull cavitation},
  Volume	= {44},
  Year		= {1984}
}

@Article{	  feltes_indications_2011,
  Title		= {Indications for Cardiac Catheterization and Intervention
		  in Pediatric Cardiac Disease: A Scientific Statement from
		  the {{American Heart Association}}},
  ShortTitle	= {Indications for Cardiac Catheterization and Intervention
		  in Pediatric Cardiac Disease},
  Author	= {Feltes, Timothy F. and Bacha, Emile and Beekman III,
		  Robert H. and Cheatham, John P. and Feinstein, Jeffrey A.
		  and Gomes, Antoinette S. and Hijazi, Ziyad M. and Ing,
		  Frank F. and De Moor, Michael and Morrow, W. Robert},
  Year		= {2011},
  Volume	= {123},
  Pages		= {2607--2652},
  Journal	= {Circulation},
  Number	= {22}
}

@Article{	  feng-ganatos-weinbaum-98,
  Author	= {Feng, J. and Ganatos, P. and Weinbaum, S.},
  code		= {por6},
  Journal	= {Physics of fluids},
  Number	= {9},
  Pages		= {2137-2146},
  Title		= {The general motion of a circular disk in a Brinkman
		  medium},
  Volume	= {10},
  Year		= {1998}
}

###Article{	  feng-ganatos-weinbaum-98,
  Author	= {Feng, J. and Ganatos, P. and Weinbaum, S.},
  code		= {por6},
  Journal	= {Physics of fluids},
  Number	= {9},
  Pages		= {2137-2146},
  Title		= {The general motion of a circular disk in a Brinkman
		  medium},
  Volume	= {10},
  Year		= {1998}
}

@Article{	  feng-ganatos-weinbaum-98b,
  Annote	= {brinkman},
  Author	= {Feng, J. and Ganatos, P. and Weinbaum, S.},
  code		= {por7},
  Journal	= {J. Fluid Mech.},
  Pages		= {265-296},
  Title		= {Motion of a sphere near planar confining boundaries in a
		  Brinkman medium},
  Volume	= {375},
  Year		= {1998}
}

###Article{	  feng-ganatos-weinbaum-98b,
  Annote	= {brinkman},
  Author	= {Feng, J. and Ganatos, P. and Weinbaum, S.},
  code		= {por7},
  Journal	= {J. Fluid Mech.},
  Pages		= {265-296},
  Title		= {Motion of a sphere near planar confining boundaries in a
		  Brinkman medium},
  Volume	= {375},
  Year		= {1998}
}

@Unpublished{	  feng-weinbaum-99,
  Annote	= {darcy, brinkman},
  Author	= {Feng, J. and Weinbaum, S.},
  code		= {por5},
  Note		= {submitted to J. Fluid Mech.},
  Title		= {A model for flow through a planar orifice in a
		  fiber-filled medium with application to fenestral pores in
		  biological tissue},
  Year		= {1999}
}

###Unpublished{	  feng-weinbaum-99,
  Annote	= {darcy, brinkman},
  Author	= {Feng, J. and Weinbaum, S.},
  code		= {por5},
  Note		= {submitted to J. Fluid Mech.},
  Title		= {A model for flow through a planar orifice in a
		  fiber-filled medium with application to fenestral pores in
		  biological tissue},
  Year		= {1999}
}

@Article{	  fenics,
  Title		= {The FEniCS Project Version 1.5},
  Author	= {Martin S. Aln{\ae}s and Jan Blechta and Johan Hake and
		  August Johansson and Benjamin Kehlet and Anders Logg and
		  Chris Richardson and Johannes Ring and Marie E. Rognes and
		  Garth N. Wells},
  Year		= {2015},
  Journal	= {Archive of Numerical Software},
  Volume	= {3},
  Number	= {100},
  DOI		= {10.11588/ans.2015.100.20553},
  page		= {9-23}
}

@Article{	  fenmori-covell-fletcher-weinstein-89,
  Author	= {Fenmori, K. and Covell, D. G. and Fletcher, J. E. and
		  Weinstein, J. N.},
  Journal	= {Cancer Research},
  Pages		= {5656-5663},
  Title		= {Modeling analysis of the global and microscopic
		  distribution of immunoglobulin {G}, {F}(ab')$_2$ and {F}ab
		  in tumors},
  Volume	= {49},
  Year		= {1989}
}

###Article{	  fenmori-covell-fletcher-weinstein-89,
  Author	= {Fenmori, K. and Covell, D. G. and Fletcher, J. E. and
		  Weinstein, J. N.},
  Journal	= {Cancer Research},
  Pages		= {5656-5663},
  Title		= {Modeling analysis of the global and microscopic
		  distribution of immunoglobulin {G}, {F}(ab')$_2$ and {F}ab
		  in tumors},
  Volume	= {49},
  Year		= {1989}
}

@InProceedings{	  fernandez-09,
  Address	= {Tokyo, Japan},
  Author	= {Fern\'andez, M.A.},
  BookTitle	= {Proc. of the 15th International Conference on Finite
		  Elements in Flow Problems},
  Month		= {April 1--3},
  Title		= {Robin based explicit coupling in fluid-structure
		  interaction},
  Year		= {2009}
}

###InProceedings{ fernandez-09,
  Address	= {Tokyo, Japan},
  Author	= {Fern\'andez, M.A.},
  BookTitle	= {Proc. of the 15th International Conference on Finite
		  Elements in Flow Problems},
  Month		= {April 1--3},
  Title		= {Robin based explicit coupling in fluid-structure
		  interaction},
  Year		= {2009}
}

@Article{	  fernandez-11b,
  Author	= {Fern\'andez, M.-A.},
  Title		= {Coupling schemes for incompressible fluid-structure
		  interaction: implicit, semi-implicit and explicit},
  Journal	= {S$\vec{\rm e}$MA J.},
  Year		= {2011},
  Number	= {55},
  Pages		= {59--108}
}

###Article{	  fernandez-11b,
  Author	= {Fern\'andez, M.-A.},
  Title		= {Coupling schemes for incompressible fluid-structure
		  interaction: implicit, semi-implicit and explicit},
  Journal	= {S$\vec{\rm e}$MA J.},
  Year		= {2011},
  Number	= {55},
  Pages		= {59--108}
}

@Article{	  fernandez-11sema,
  Author	= {Fern\'andez, M.A.},
  Journal	= {Bol. Soc. Esp. Mat. Apl.},
  Number	= {},
  Pages		= {},
  Title		= {Coupling schemes for incompressible fluid-structure
		  interaction: implicit, semi-implicit and explicit},
  Volume	= {to appear},
  Year		= {2011}
}

###Article{	  fernandez-11sema,
  Author	= {Fern\'andez, M.A.},
  Journal	= {Bol. Soc. Esp. Mat. Apl.},
  Number	= {},
  Pages		= {},
  Title		= {Coupling schemes for incompressible fluid-structure
		  interaction: implicit, semi-implicit and explicit},
  Volume	= {to appear},
  Year		= {2011}
}

@PhdThesis{	  fernandez-89,
  Author	= {G. Fernandez},
  Month		= {juin},
  School	= {universit{\'e} de Nice},
  Title		= {Simulation num{\'e}rique d'{\'e}coulements r{\'e}actifs
		  {\`a} petit nombre de Mach},
  Year		= {1989}
}

###PhdThesis{	  fernandez-89,
  Author	= {G. Fernandez},
  Month		= {juin},
  School	= {universit{\'e} de Nice},
  Title		= {Simulation num{\'e}rique d'{\'e}coulements r{\'e}actifs
		  {\`a} petit nombre de Mach},
  Year		= {1989}
}

@InBook{	  fernandez-gerbeau-09,
  Author	= {Fern\'andez, M.A. and Gerbeau, J-F.},
  Title		= {Fluid structure interaction problems in haemodynamics},
  Chapter	= 9,
  Publisher	= {Springer Verlag},
  Year		= {2009},
  Note		= {in {\em Cardiovascular {M}athematics. {M}odeling and
		  simulation of the circulatory system}, L. Formaggia, A.
		  Quarteroni, A. Veneziani editors}
}

@Article{	  fernandez-gerbeau-grandmont-06,
  Author	= {Fern{\'a}ndez, M.A. and Gerbeau, J-F. and Grandmont, C.},
  Journal	= {C. R. Math. Acad. Sci. Paris},
  Number	= {4},
  Pages		= {279--284},
  Title		= {A projection algorithm for fluid-structure interaction
		  problems with strong added-mass effect},
  Volume	= {342},
  Year		= {2006}
}

###Article{	  fernandez-gerbeau-grandmont-06,
  Author	= {Fern{\'a}ndez, M.A. and Gerbeau, J-F. and Grandmont, C.},
  Journal	= {C. R. Math. Acad. Sci. Paris},
  Number	= {4},
  Pages		= {279--284},
  Title		= {A projection algorithm for fluid-structure interaction
		  problems with strong added-mass effect},
  Volume	= {342},
  Year		= {2006}
}

@Article{	  fernandez-gerbeau-grandmont-07,
  Author	= {Fern{\'a}ndez, M.A. and Gerbeau, J.F. and Grandmont, C.},
  Journal	= {Int. J. Num. Meth. Engrg.},
  Number	= {4},
  Pages		= {794--821},
  Title		= {A projection semi-implicit scheme for the coupling of an
		  elastic structure with an incompressible fluid},
  Volume	= {69},
  Year		= {2007}
}

###Article{	  fernandez-gerbeau-grandmont-07,
  Author	= {Fern{\'a}ndez, M.A. and Gerbeau, J.F. and Grandmont, C.},
  Journal	= {Int. J. Num. Meth. Engrg.},
  Number	= {4},
  Pages		= {794--821},
  Title		= {A projection semi-implicit scheme for the coupling of an
		  elastic structure with an incompressible fluid},
  Volume	= {69},
  Year		= {2007}
}

@Article{	  fernandez-gerbeau-martin-08,
  Author	= {Fern\'andez, M.A. and Gerbeau, J-F. and Martin, V.},
  Journal	= {M2AN Math. Model. Numer. Anal.},
  Pages		= {961--990},
  Title		= {Numerical simulation of blood flows through a porous
		  interface},
  Volume	= {42},
  Year		= {2008}
}

###Article{	  fernandez-gerbeau-martin-08,
  Author	= {Fern\'andez, M.A. and Gerbeau, J-F. and Martin, V.},
  Journal	= {M2AN Math. Model. Numer. Anal.},
  Pages		= {961--990},
  Title		= {Numerical simulation of blood flows through a porous
		  interface},
  Volume	= {42},
  Year		= {2008}
}

@InProceedings{	  fernandez-guillard-89,
  Author	= {G. Fernandez and H. Guillard},
  BookTitle	= {Proceedings of the 6th Int. Conf. on Numerical methods in
		  laminar and turbulent flows},
  Editor	= {Taylor, C. and Gresho, P. and Sani, R.L. and Hauser, J.},
  Month		= {11-15 july},
  Publisher	= {Pineridge Press, Swansea},
  Title		= {A numerical method for the computation of low {M}ach
		  number reactive flows},
  Year		= {1989}
}

###InProceedings{ fernandez-guillard-89,
  Author	= {G. Fernandez and H. Guillard},
  BookTitle	= {Proceedings of the 6th Int. Conf. on Numerical methods in
		  laminar and turbulent flows},
  Editor	= {Taylor, C. and Gresho, P. and Sani, R.L. and Hauser, J.},
  Month		= {11-15 july},
  Publisher	= {Pineridge Press, Swansea},
  Title		= {A numerical method for the computation of low {M}ach
		  number reactive flows},
  Year		= {1989}
}

@Article{	  fernandez-le-tallec-03,
  Author	= {Fern\'andez, M.A. and Le Tallec, P.},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Title		= {Linear fluid-structure stability analysis with
		  transpiration. Part II: numerical analysis and
		  applications},
  Volume	= {192},
  Number	= {43},
  Pages		= {4837-4873},
  Year		= {2003}
}

###Article{	  fernandez-le-tallec-03,
  Author	= {Fern\'andez, M.A. and Le Tallec, P.},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Title		= {Linear fluid-structure stability analysis with
		  transpiration. Part II: numerical analysis and
		  applications},
  Volume	= {192},
  Number	= {43},
  Pages		= {4837-4873},
  Year		= {2003}
}

@Article{	  fernandez-letallec-03,
  Author	= {Fernandez, M. and Le Tallec, P.},
  Journal	= {Comp. Meth. App. Mech.. Eng},
  Pages		= {4837-4873},
  Title		= {Linear fluid-structure stability analysis with
		  transpiration. Part II: numerical analysis and
		  applications},
  Volume	= {192},
  Year		= {2003}
}

###Article{	  fernandez-letallec-03,
  Author	= {Fernandez, M. and Le Tallec, P.},
  Journal	= {Comp. Meth. App. Mech.. Eng},
  Pages		= {4837-4873},
  Title		= {Linear fluid-structure stability analysis with
		  transpiration. Part II: numerical analysis and
		  applications},
  Volume	= {192},
  Year		= {2003}
}

@Article{	  fernandez-moubachir-03a,
  Author	= {Fern{\'a}ndez, M.A. and Moubachir, M.},
  Journal	= {C. R. Math. Acad. Sci. Paris},
  Number	= {8},
  Pages		= {681--686},
  Title		= {An exact block-{N}ewton algorithm for solving
		  fluid-structure interaction problems},
  Volume	= {336},
  Year		= {2003}
}

###Article{	  fernandez-moubachir-03a,
  Author	= {Fern{\'a}ndez, M.A. and Moubachir, M.},
  Journal	= {C. R. Math. Acad. Sci. Paris},
  Number	= {8},
  Pages		= {681--686},
  Title		= {An exact block-{N}ewton algorithm for solving
		  fluid-structure interaction problems},
  Volume	= {336},
  Year		= {2003}
}

@InProceedings{	  fernandez-moubachir-03b,
  Author	= {Fern{\'a}ndez, M.A. and Moubachir, M.},
  BookTitle	= {Second M.I.T. Conference on Computational Fluid and Solid
		  Mechanics},
  code		= {fsi8},
  Editor	= {K.J. Bathe},
  Pages		= {1337-1341},
  Publisher	= {Elsevier},
  Title		= {An exact Block-Newton algorithm for the solution of
		  implicit time discretized coupled systems involved in
		  fluid-structure interaction problems},
  Year		= {2003}
}

###InProceedings{ fernandez-moubachir-03b,
  Author	= {Fern{\'a}ndez, M.A. and Moubachir, M.},
  BookTitle	= {Second M.I.T. Conference on Computational Fluid and Solid
		  Mechanics},
  code		= {fsi8},
  Editor	= {K.J. Bathe},
  Pages		= {1337-1341},
  Publisher	= {Elsevier},
  Title		= {An exact Block-Newton algorithm for the solution of
		  implicit time discretized coupled systems involved in
		  fluid-structure interaction problems},
  Year		= {2003}
}

@InProceedings{	  fernandez-moubachir-04,
  Address	= {Jyv{\"a}skyl{\"a}, Finland},
  Author	= {Fern{\'a}ndez, M. A. and Moubachir, M.},
  BookTitle	= {4$^{\mathrm{th}}$ European Congress on Computational
		  Methods in Applied Sciences and Engineering},
  Editor	= {Neittaanm{\"a}ki, P and Rossi, T. and Majava, K. and
		  Pironneau, O.},
  Month		= {July},
  Title		= {Numerical Simulation of Fluid-structure Systems via
		  {N}ewton's Method with Exact {J}acobians},
  Volume	= {1},
  Year		= {2004}
}

###InProceedings{ fernandez-moubachir-04,
  Address	= {Jyv{\"a}skyl{\"a}, Finland},
  Author	= {Fern{\'a}ndez, M. A. and Moubachir, M.},
  BookTitle	= {4$^{\mathrm{th}}$ European Congress on Computational
		  Methods in Applied Sciences and Engineering},
  Editor	= {Neittaanm{\"a}ki, P and Rossi, T. and Majava, K. and
		  Pironneau, O.},
  Month		= {July},
  Title		= {Numerical Simulation of Fluid-structure Systems via
		  {N}ewton's Method with Exact {J}acobians},
  Volume	= {1},
  Year		= {2004}
}

@Article{	  fernandez-moubachir-05,
  Author	= {Fern{\'a}ndez, M.A. and Moubachir, M.},
  Journal	= {Comp. \& Struct.},
  Pages		= {127-142},
  Title		= {A {N}ewton method using exact {Jacobians} for solving
		  fluid-structure coupling},
  Volume	= {83},
  Year		= {2005}
}

###Article{	  fernandez-moubachir-05,
  Author	= {Fern{\'a}ndez, M.A. and Moubachir, M.},
  Journal	= {Comp. \& Struct.},
  Pages		= {127-142},
  Title		= {A {N}ewton method using exact {Jacobians} for solving
		  fluid-structure coupling},
  Volume	= {83},
  Year		= {2005}
}

@Unpublished{	  fernandez-moura-vergara-05,
  Author	= {Fern\'{a}ndez, M. and Moura, A. and Vergara, C.},
  Note		= {in this proceedings},
  Title		= {Defective boundary conditions applied to multiscale
		  analysis of blood flow}
}

###Unpublished{	  fernandez-moura-vergara-05,
  Author	= {Fern\'{a}ndez, M. and Moura, A. and Vergara, C.},
  Note		= {in this proceedings},
  Title		= {Defective boundary conditions applied to multiscale
		  analysis of blood flow}
}

@Article{	  fernandez07_semiimplicit,
  Author	= "Fern\'{a}ndez, M.~A. and Gerbeau, J.-F. and Grandmont, C.",
  Title		= "A projection semi-implicit scheme for the coupling of an
		  elastic structure with an incompressible fluid",
  Journal	= ijnme,
  Volume	= "69",
  Number	= "4",
  Pages		= "794--821",
  Year		= "2007"
}

###Article{	  fernandez07_semiimplicit,
  Author	= "Fern\'{a}ndez, M.~A. and Gerbeau, J.-F. and Grandmont, C.",
  Title		= "A projection semi-implicit scheme for the coupling of an
		  elastic structure with an incompressible fluid",
  Journal	= ijnme,
  Volume	= "69",
  Number	= "4",
  Pages		= "794--821",
  Year		= "2007"
}

@Article{	  fernandez1982,
  Title		= {Myocardial fiber architecture of the human heart
		  ventricles},
  Author	= {Fernandez-Teran, M.A. and Hurle, J.M.},
  Journal	= {The Anatomical Record},
  Volume	= {204},
  Number	= {2},
  Pages		= {137--147},
  Year		= {1982},
  Publisher	= {Wiley Online Library}
}

@Article{	  fernandez2007projection,
  Title		= {A projection semi-implicit scheme for the coupling of an
		  elastic structure with an incompressible fluid},
  Author	= {Fern{\'a}ndez, Miguel Angel and Gerbeau, J-F and
		  Grandmont, C{\'e}line},
  Journal	= {International Journal for Numerical Methods in
		  Engineering},
  Volume	= {69},
  Number	= {4},
  Pages		= {794--821},
  Year		= {2007},
  Publisher	= {Wiley Online Library}
}

@Article{	  fernandez2015fully,
  Title		= {Fully decoupled time-marching schemes for incompressible
		  fluid/thin-walled structure interaction},
  Author	= {Fern{\'a}ndez, Miguel A and Landajuela, Mikel and
		  Vidrascu, Marina},
  Journal	= {Journal of Computational Physics},
  Volume	= {297},
  Pages		= {156--181},
  Year		= {2015},
  Publisher	= {Elsevier}
}

@InCollection{	  fernandez_derivation_2009,
  langid	= {english},
  Location	= {{Milano}},
  Title		= {The Derivation of the Equations for Fluids and Structure},
  ISBN		= {978-88-470-1152-6},
  URL		= {https://doi.org/10.1007/978-88-470-1152-6_3},
  Abstract	= {In this chapter we derive the equations governing the
		  mechanics of the fluid (the blood) and the structure (the
		  vessel wall). The derivation will be made in a rigorous
		  way, yet trying to provide the reader a physical
		  understanding. Reason of space obliged us to focus on the
		  most important models for haemodynamic computations and to
		  omit several details and the proofs of the propositions.
		  For instance, all issues related to energy conservation
		  principles have been ignored and we have eventually
		  considered only incompressible fluids.},
  BookTitle	= {Cardiovascular {{Mathematics}}: {{Modeling}} and
		  Simulation of the Circulatory System},
  Series	= {{{MS}}\&{{A}}},
  Publisher	= {{Springer Milan}},
  URLDate	= {2019-02-17},
  Year		= {2009},
  Pages		= {77-121},
  Author	= {FernÃ¡ndez, Miguel A. and Formaggia, Luca and Gerbeau,
		  Jean-Frederic and Quarteroni, Alfio},
  Editor	= {Formaggia, Luca and Quarteroni, Alfio and Veneziani,
		  Alessandro},
  DOI		= {10.1007/978-88-470-1152-6_3}
}

@Article{	  fernandez_linear_2003,
  langid	= {english},
  Title		= {Linear Stability Analysis in FluidâStructure Interaction
		  with Transpiration. {{Part I}}: {{Formulation}} and
		  Mathematical Analysis},
  Volume	= {192},
  ISSN		= {00457825},
  URL		= {https://linkinghub.elsevier.com/retrieve/pii/S0045782503004614},
  DOI		= {10.1016/j.cma.2003.07.001},
  ShortTitle	= {Linear Stability Analysis in FluidâStructure Interaction
		  with Transpiration. {{Part I}}},
  Abstract	= {The aim of this work is to provide a new Linearization
		  Principle approach particularly suited for problems in
		  ï¬uidâstructure stability. The complexity here, and the
		  main diï¬erence with respect to the classical approach,
		  comes from the fact that the full non-linear ï¬uid
		  equations are written in a moving (i.e. time dependent)
		  domain. The underlying idea of our approach uses
		  transpiration techniques [J. Fluid Mech. 4 (1958) 383; G.
		  Mortch el ewicz, Application of linearized Euler equations
		  to ï¬utter, in: 85th AGARD SMP Meeting, Aalborg, Denmark,
		  1997; P. Raj, B. Harris, Using surface transpiration with
		  an Euler method for cost-eï¬ective aerodynamic analysis,
		  in: AIAA 24th Applied Aerodynamics Conference, number
		  93-3506, Monterey, Canada, 1993; AIAA 27(6) (1989) 777],
		  with the formalization and linearization recently developed
		  in [R ev. Europ eenne E l em. Finis, 9(6â7) (2000) 681,
		  A. Dervieux (Ed.), FluidâStructure Interaction, Kogan
		  Page Science, London, 2003 (Chapter 3)]. This allows us to
		  obtain a new grid independent coupled spectral problem
		  involving the linearized NavierâStokes equations and
		  those of a reduced linear structure. The coupling is
		  realized through speciï¬c transpiration conditions acting
		  on a ï¬xed interface, while keeping a ï¬xed ï¬uid
		  domain. We provide a rigorous mathematical treatment of
		  this eigenproblem. We prove that the corresponding
		  eigenmodes, characterizing the free evolution of the
		  system, can be obtained from the characteristic values of a
		  compact operator acting on a Hilbert space. Moreover, we
		  localize the eigenfrequencies of the system in a parabolic
		  region of the complex plan centered along the positive real
		  axis.},
  Number	= {43},
  JournalTitle	= {Computer Methods in Applied Mechanics and Engineering},
  URLDate	= {2019-08-24},
  Date		= {2003-10},
  Pages		= {4805-4835},
  Author	= {FernÃ¡ndez, Miguel Ãngel and Le Tallec, Patrick}
}

@Article{	  fernandez_projection_2007,
  Title		= {A Projection Semi-Implicit Scheme for the Coupling of an
		  Elastic Structure with an Incompressible Fluid},
  Volume	= {69},
  Number	= {4},
  JournalTitle	= {International Journal for Numerical Methods in
		  Engineering},
  Date		= {2007},
  Pages		= {794-821},
  Author	= {FernÃ¡ndez, Miguel Angel and Gerbeau, J-F and Grandmont,
		  Celine},
  Publisher	= {{Wiley Online Library}}
}

@Article{	  fernandezgerbeaumartin08,
  Author	= "Fern\'{a}ndez, M.~A. and Gerbeau, J.-F. and Martin, V.",
  Title		= "Numerical Simulation of blood flows through a porous
		  interface",
  Journal	= m2an,
  Volume	= "42",
  Number	= "6",
  Pages		= "961--990",
  Year		= "2008"
}

###Article{	  fernandezgerbeaumartin08,
  Author	= "Fern\'{a}ndez, M.~A. and Gerbeau, J.-F. and Martin, V.",
  Title		= "Numerical Simulation of blood flows through a porous
		  interface",
  Journal	= m2an,
  Volume	= "42",
  Number	= "6",
  Pages		= "961--990",
  Year		= "2008"
}

@Article{	  ferreira2014jcmr,
  Title		= {In vivo cardiovascular magnetic resonance diffusion tensor
		  imaging shows evidence of abnormal myocardial laminar
		  orientations and mobility in hypertrophic cardiomyopathy.},
  Author	= {Ferreira, Pedro F. and Kilner, Philip J. and McGill,
		  Laura-Ann and Nielles-Vallespin, Sonia and Scott, Andrew D.
		  and Ho, Siew Y. and McCarthy, Karen P. and Haba, Margarita
		  M. and Ismail, Tevfik F. and Gatehouse, Peter D. and {de
		  Silva}, Ranil and Lyon, Alexander R. and Prasad, Sanjay K.
		  and Firmin, David N. and Pennell, Dudley J.},
  Journal	= {J Cardiovasc Magn Reson},
  Year		= {2014},
  Pages		= {87},
  Volume	= {16},
  Abstract	= {Cardiac diffusion tensor imaging (cDTI) measures the
		  magnitudes and directions of intramyocardial water
		  diffusion. Assuming the cross-myocyte components to be
		  constrained by the laminar microstructures of myocardium,
		  we hypothesized that cDTI at two cardiac phases might
		  identify any abnormalities of laminar orientation and
		  mobility in hypertrophic cardiomyopathy (HCM).We performed
		  cDTI in vivo at 3 Tesla at end-systole and late diastole in
		  11 healthy controls and 11 patients with HCM, as well as
		  late gadolinium enhancement (LGE) for detection of regional
		  fibrosis.Voxel-wise analysis of diffusion tensors relative
		  to left ventricular coordinates showed expected transmural
		  changes of myocardial helix-angle, with no significant
		  differences between phases or between HCM and control
		  groups. In controls, the angle of the second eigenvector of
		  diffusion (E2A) relative to the local wall tangent plane
		  was larger in systole than diastole, in accord with
		  previously reported changes of laminar orientation. HCM
		  hearts showed higher than normal global E2A in systole
		  (63.9Â° vs 56.4Â° controls, p=0.026) and markedly raised
		  E2A in diastole (46.8Â° vs 24.0Â° controls, p<0.001). In
		  hypertrophic regions, E2A retained a high, systole-like
		  angulation even in diastole, independent of LGE, while
		  regions of normal wall thickness did not (LGE present
		  57.8Â°, p=0.0028, LGE absent 54.8Â°, p=0.0022 vs normal
		  thickness 38.1Â°).In healthy controls, the angles of
		  cross-myocyte components of diffusion were consistent with
		  previously reported transmural orientations of laminar
		  microstructures and their changes with contraction. In HCM,
		  especially in hypertrophic regions, they were consistent
		  with hypercontraction in systole and failure of relaxation
		  in diastole. Further investigation of this finding is
		  required as previously postulated effects of strain might
		  be a confounding factor.},
  DOI		= {10.1186/s12968-014-0087-8},
  Institution	= {pton Hospital and Imperial College, London, UK.
		  d.firmin@ic.ac.uk.},
  Keywords	= {Aged; Cardiomyopathy, Hypertrophic,
		  diagnosis/pathology/physiopathology; Case-Control Studies;
		  Diffusion Magnetic Resonance Imaging; Diffusion Tensor
		  Imaging; Female; Fibrosis; Humans; Image Interpretation,
		  Computer-Assisted; Magnetic Resonance Imaging, Cine; Male;
		  Middle Aged; Myocardial Contraction; Myocardium, pathology;
		  Predictive Value of Tests; Ventricular Function, Left},
  Language	= {eng},
  medline-pst	= {epublish},
  owner		= {stoeckc},
  pii		= {s12968-014-0087-8},
  pmid		= {25388867},
  timestamp	= {2015.07.24},
  URL		= {http://dx.doi.org/10.1186/s12968-014-0087-8}
}

@Article{	  ferruzzi2011on,
  Title		= {On constitutive descriptors of the biaxial mechanical
		  behaviour of human abdominal aorta and aneurysms.},
  Author	= {Ferruzzi, J. and Vorp, D.A. and Humphrey, J.D.},
  Journal	= {Journal of the Royal Society Interface},
  Volume	= {8},
  Number	= {56},
  Pages		= {435-50},
  Year		= {2011},
  Abstract	= {The abdominal aorta (AA) in older individuals can develop
		  an aneurysm, which is of increasing concern in our ageing
		  population. The structural integrity of the ageing aortic
		  wall, and hence aneurysm, depends primarily on effective
		  elastin and multiple families of oriented collagen fibres.
		  In this paper, we show that a structurally motivated
		  phenomenological 'four-fibre family' constitutive relation
		  captures the biaxial mechanical behaviour of both the human
		  AA, from ages less than 30 to over 60, and abdominal aortic
		  aneurysms. Moreover, combining the statistical technique
		  known as non-parametric bootstrap with a modal clustering
		  method provides improved confidence intervals for estimated
		  best-fit values of the eight associated constitutive
		  parameters. It is suggested that this constitutive relation
		  captures the well-known loss of structural integrity of
		  elastic fibres owing to ageing and the development of
		  abdominal aneurysms, and that it provides important insight
		  needed to construct growth and remodelling models for
		  aneurysms, which in turn promise to improve our ability to
		  predict disease progression. }
}

###Article{	  ferruzzi2011on,
  Title		= {On constitutive descriptors of the biaxial mechanical
		  behaviour of human abdominal aorta and aneurysms.},
  Author	= {Ferruzzi, J. and Vorp, D.A. and Humphrey, J.D.},
  Journal	= {Journal of the Royal Society Interface},
  Volume	= {8},
  Number	= {56},
  Pages		= {435-50},
  Year		= {2011},
  Abstract	= {The abdominal aorta (AA) in older individuals can develop
		  an aneurysm, which is of increasing concern in our ageing
		  population. The structural integrity of the ageing aortic
		  wall, and hence aneurysm, depends primarily on effective
		  elastin and multiple families of oriented collagen fibres.
		  In this paper, we show that a structurally motivated
		  phenomenological 'four-fibre family' constitutive relation
		  captures the biaxial mechanical behaviour of both the human
		  AA, from ages less than 30 to over 60, and abdominal aortic
		  aneurysms. Moreover, combining the statistical technique
		  known as non-parametric bootstrap with a modal clustering
		  method provides improved confidence intervals for estimated
		  best-fit values of the eight associated constitutive
		  parameters. It is suggested that this constitutive relation
		  captures the well-known loss of structural integrity of
		  elastic fibres owing to ageing and the development of
		  abdominal aneurysms, and that it provides important insight
		  needed to construct growth and remodelling models for
		  aneurysms, which in turn promise to improve our ability to
		  predict disease progression. }
}

@Article{	  fezoui-85,
  Author	= {Fezoui, F.},
  Journal	= {Research report INRIA},
  Title		= {R{\'e}solution des {\'e}quations d'{E}uler par un
		  sch{\'e}ma de van {L}eer en {\'e}l{\'e}ments finis},
  Volume	= {358},
  Year		= {1985}
}

###Article{	  fezoui-85,
  Author	= {Fezoui, F.},
  Journal	= {Research report INRIA},
  Title		= {R{\'e}solution des {\'e}quations d'{E}uler par un
		  sch{\'e}ma de van {L}eer en {\'e}l{\'e}ments finis},
  Volume	= {358},
  Year		= {1985}
}

@Unpublished{	  figueroa-vignon-kenneth-jansen-hughes-taylor-xx,
  Author	= {Figueroa, A. and Vignon-Clementel, I. and Jansen, K.E. and
		  Hughes, T.J.R. and Taylor, C.A.},
  Note		= { To appear in {\it Comput. Methods Appl. Mech. Engrg.}},
  Title		= {A coupled momentum method for modeling blood flow in
		  three-dimensional deformable arteries}
}

###Unpublished{	  figueroa-vignon-kenneth-jansen-hughes-taylor-xx,
  Author	= {Figueroa, A. and Vignon-Clementel, I. and Jansen, K.E. and
		  Hughes, T.J.R. and Taylor, C.A.},
  Note		= { To appear in {\it Comput. Methods Appl. Mech. Engrg.}},
  Title		= {A coupled momentum method for modeling blood flow in
		  three-dimensional deformable arteries}
}

@Article{	  figueroa2009cmame,
  Title		= {A computational framework for fluid?solid-growth modeling
		  in cardiovascular simulations },
  Author	= {C. Alberto Figueroa and Seungik Baek and Charles A. Taylor
		  and Jay D. Humphrey},
  Journal	= {Computer Methods in Applied Mechanics and Engineering },
  Year		= {2009},
  Note		= {Models and Methods in Computational Vascular and
		  Cardiovascular Mechanics },
  Number	= {45?46},
  Pages		= {3583 - 3602},
  Volume	= {198},
  Abstract	= {It is now well known that altered hemodynamics can alter
		  the genes that are expressed by diverse vascular cells,
		  which in turn plays a critical role in the ability of a
		  blood vessel to adapt to new biomechanical conditions and
		  governs the natural history of the progression of many
		  types of disease. Fortunately, when taken together, recent
		  advances in molecular and cell biology, in vivo medical
		  imaging, biomechanics, computational mechanics, and
		  computing power provide an unprecedented opportunity to
		  begin to understand such hemodynamic effects on vascular
		  biology, physiology, and pathophysiology. Moreover, with
		  increased understanding will come the promise of improved
		  designs for medical devices and clinical interventions. The
		  goal of this paper, therefore, is to present a new
		  computational framework that brings together recent
		  advances in computational biosolid and biofluid mechanics
		  that can exploit new information on the biology of vascular
		  growth and remodeling as well as in vivo patient- specific
		  medical imaging so as to enable realistic simulations of
		  vascular adaptations, disease progression, and clinical
		  intervention. },
  DOI		= {http://dx.doi.org/10.1016/j.cma.2008.09.013},
  File		= {figueroa09.pdf:figueroa09.pdf:PDF},
  ISSN		= {0045-7825},
  Keywords	= {Artery},
  timestamp	= {2015/09/22},
  URL		= {http://www.sciencedirect.com/science/article/pii/S004578250800340X}
}

@Article{	  figueroa_coupled_2006,
  langid	= {english},
  Title		= {A Coupled Momentum Method for Modeling Blood Flow in
		  Three-Dimensional Deformable Arteries},
  Volume	= {195},
  ISSN		= {00457825},
  URL		= {https://linkinghub.elsevier.com/retrieve/pii/S004578250500513X},
  DOI		= {10.1016/j.cma.2005.11.011},
  Abstract	= {Blood velocity and pressure ï¬elds in large arteries are
		  greatly inï¬uenced by the deformability of the vessel.
		  Moreover, wave propagation phenomena in the cardiovascular
		  system can only be described considering wall deformability
		  since blood is usually described as an incompressible
		  ï¬uid. However, computational methods for simulating blood
		  ï¬ow in three-dimensional models of arteries have either
		  considered a rigid wall assumption for the vessel or
		  signiï¬cantly simpliï¬ed or reduced geometries. Computing
		  blood ï¬ow in deformable domains using standard techniques
		  like the ALE method remains a formidable problem for large,
		  realistic anatomic and physiologic models of the
		  cardiovascular system.},
  Number	= {41-43},
  JournalTitle	= {Computer Methods in Applied Mechanics and Engineering},
  URLDate	= {2019-08-24},
  Date		= {2006-08},
  Pages		= {5685-5706},
  Author	= {Figueroa, C. Alberto and Vignon-Clementel, Irene E. and
		  Jansen, Kenneth E. and Hughes, Thomas J.R. and Taylor,
		  Charles A.}
}

@Article{	  fleming-97,
  Author	= {Fleming, Wendell H.},
  Journal	= {Annali della Scuola Normale Superiore di Pisa - Classe di
		  Scienze},
  Pages		= {435--454},
  Title		= {Deterministic nonlinear filtering},
  Volume	= {25},
  Year		= {1997}
}

###Article{	  fleming-97,
  Author	= {Fleming, Wendell H.},
  Journal	= {Annali della Scuola Normale Superiore di Pisa - Classe di
		  Scienze},
  Pages		= {435--454},
  Title		= {Deterministic nonlinear filtering},
  Volume	= {25},
  Year		= {1997}
}

@Article{	  foias-saut-84,
  Author	= {Foias, C. and Saut, J.C.},
  Journal	= {Ind. Univ. Math. J.},
  Number	= {3},
  Pages		= {459-471},
  Title		= {Asymptotic behaviour, as $t\longrightarrow+\infty$ of
		  solutions of {Navier-Stokes} equations and nonlinear
		  spectral manifolds},
  Volume	= {33},
  Year		= {1984}
}

###Article{	  foias-saut-84,
  Author	= {Foias, C. and Saut, J.C.},
  Journal	= {Ind. Univ. Math. J.},
  Number	= {3},
  Pages		= {459-471},
  Title		= {Asymptotic behaviour, as $t\longrightarrow+\infty$ of
		  solutions of {Navier-Stokes} equations and nonlinear
		  spectral manifolds},
  Volume	= {33},
  Year		= {1984}
}

@Article{	  fomovsky2010jmcc,
  Title		= {Contribution of extracellular matrix to the mechanical
		  properties of the heart },
  Author	= {Gregory M. Fomovsky and Stavros Thomopoulos and Jeffrey W.
		  Holmes},
  Journal	= {Journal of Molecular and Cellular Cardiology },
  Year		= {2010},
  Note		= {Special Issue: Extracellular Matrix },
  Number	= {3},
  Pages		= {490 - 496},
  Volume	= {48},
  Abstract	= {Extracellular matrix (ECM) components play essential roles
		  in development, remodeling, and signaling in the
		  cardiovascular system. They are also important in
		  determining the mechanics of blood vessels, valves,
		  pericardium, and myocardium. The goal of this brief review
		  is to summarize available information regarding the
		  mechanical contributions of \{ECM\} in the myocardium.
		  Fibrillar collagen, elastin, and proteoglycans all play
		  crucial mechanical roles in many tissues in the body
		  generally and in the cardiovascular system specifically.
		  The myocardium contains all three components, but their
		  mechanical contributions are relatively poorly understood.
		  Most studies of \{ECM\} contributions to myocardial
		  mechanics have focused on collagen, but quantitative
		  prediction of mechanical properties of the myocardium, or
		  changes in those properties with disease, from measured
		  tissue structure is not yet possible. Circumstantial
		  evidence suggests that the mechanics of cardiac elastin and
		  proteoglycans merit further study. Work in other tissues
		  used a combination of correlation, modification or
		  digestion, and mathematical modeling to establish
		  mechanical roles for specific \{ECM\} components; this work
		  can provide guidance for new experiments and modeling
		  studies in myocardium. },
  DOI		= {http://dx.doi.org/10.1016/j.yjmcc.2009.08.003},
  File		= {fomovsky10.pdf:fomovsky10.pdf:PDF},
  ISSN		= {0022-2828},
  Keywords	= {Collagen},
  timestamp	= {2015/09/23},
  URL		= {http://www.sciencedirect.com/science/article/pii/S0022282809003253}
}

@Article{	  formaggia-gerbeau-nobile-quarteroni-01,
  Author	= {Formaggia, L. and Gerbeau, J-F. and Nobile, F. and
		  Quarteroni, A.},
  Journal	= {Comp. Meth. Appl. Mech. Engrg.},
  Number	= {6-7},
  Pages		= {561-582},
  Title		= {On the Coupling of {3D} and {1D} {Navier-Stokes} equations
		  for Flow Problems in Compliant Vessels},
  Volume	= {191},
  Year		= {2001}
}

###Article{	  formaggia-gerbeau-nobile-quarteroni-01,
  Author	= {Formaggia, L. and Gerbeau, J-F. and Nobile, F. and
		  Quarteroni, A.},
  Journal	= {Comp. Meth. Appl. Mech. Engrg.},
  Number	= {6-7},
  Pages		= {561-582},
  Title		= {On the Coupling of {3D} and {1D} {Navier-Stokes} equations
		  for Flow Problems in Compliant Vessels},
  Volume	= {191},
  Year		= {2001}
}

@Article{	  formaggia-gerbeau-nobile-quarteroni-02,
  Author	= {Formaggia, L. and Gerbeau, J-F. and Nobile, F. and
		  Quarteroni, A.},
  Journal	= {SIAM J. Numerical Analysis},
  Number	= {1},
  Pages		= {376-401},
  Title		= {Numerical treatment of defective boundary conditions for
		  the {Navier-Stokes} equations},
  Volume	= {40},
  Year		= {2002}
}

###Article{	  formaggia-gerbeau-nobile-quarteroni-02,
  Author	= {Formaggia, L. and Gerbeau, J-F. and Nobile, F. and
		  Quarteroni, A.},
  Journal	= {SIAM J. Numerical Analysis},
  Number	= {1},
  Pages		= {376-401},
  Title		= {Numerical treatment of defective boundary conditions for
		  the {Navier-Stokes} equations},
  Volume	= {40},
  Year		= {2002}
}

@Article{	  formaggia-lamponi-quarteroni-2003,
  Title		= {One-dimensional models for blood flow in arteries},
  Volume	= {47},
  Number	= {3},
  Journal	= {Journal of Engineering Mathematics},
  Publisher	= {Springer},
  Author	= {Formaggia, L. and Lamponi, D. and Quarteroni, A.},
  Year		= {2003},
  Pages		= {251--276}
}

###Article{	  formaggia-lamponi-quarteroni-2003,
  Title		= {One-dimensional models for blood flow in arteries},
  Volume	= {47},
  URL		= {http://www.springerlink.com/openurl.asp?id=doi:10.1023/B:ENGI.0000007980.01347.29},
  Number	= {3},
  Journal	= {Journal of Engineering Mathematics},
  Publisher	= {Springer},
  Author	= {Formaggia, L. and Lamponi, D. and Quarteroni, A.},
  Year		= {2003},
  Pages		= {251--276}
}

@Article{	  formaggia-moura-nobile-07,
  Author	= {Formaggia, L. and Moura, A. and Nobile, F.},
  Journal	= {ESAIM-Mathematical Modelling and Numerical Analysis},
  Number	= {4},
  Pages		= {743--770},
  Publisher	= {Paris: EDP Sciences, SMAI, c1999-},
  Title		= {On the stability of the coupling of 3D and 1D
		  fluid-structure interaction models for blood flow
		  simulations},
  Volume	= {41},
  Year		= {2007}
}

###Article{	  formaggia-moura-nobile-07,
  Author	= {Formaggia, L. and Moura, A. and Nobile, F.},
  Journal	= {ESAIM-Mathematical Modelling and Numerical Analysis},
  Number	= {4},
  Pages		= {743--770},
  Publisher	= {Paris: EDP Sciences, SMAI, c1999-},
  Title		= {On the stability of the coupling of 3D and 1D
		  fluid-structure interaction models for blood flow
		  simulations},
  Volume	= {41},
  Year		= {2007}
}

@Article{	  formaggia-nobile-99,
  Author	= {Formaggia, L. and Nobile, F.},
  code		= {mob9},
  Journal	= {East-West J. Numer. Math.},
  Number	= {2},
  Pages		= {105--131},
  Title		= {A stability analysis for the arbitrary {L}agrangian
		  {E}ulerian formulation with finite elements},
  Volume	= {7},
  Year		= {1999}
}

###Article{	  formaggia-nobile-99,
  Author	= {Formaggia, L. and Nobile, F.},
  code		= {mob9},
  Journal	= {East-West J. Numer. Math.},
  Number	= {2},
  Pages		= {105--131},
  Title		= {A stability analysis for the arbitrary {L}agrangian
		  {E}ulerian formulation with finite elements},
  Volume	= {7},
  Year		= {1999}
}

@Book{		  formaggia-quarteroni-veneziani-09,
  Editor	= {Formaggia, L. and Quarteroni, A. and Veneziani, A.},
  Publisher	= {Springer},
  Series	= {Modeling, Simulation and Applications},
  Title		= {Cardiovascular {M}athematics. {M}odeling and simulation of
		  the circulatory system},
  Volume	= {1},
  Year		= {2009}
}

###Book{	  formaggia-quarteroni-veneziani-09,
  Editor	= {Formaggia, L. and Quarteroni, A. and Veneziani, A.},
  Publisher	= {Springer},
  Series	= {Modeling, Simulation and Applications},
  Title		= {Cardiovascular {M}athematics. {M}odeling and simulation of
		  the circulatory system},
  Volume	= {1},
  Year		= {2009}
}

@InBook{	  formaggia2009book,
  Author	= {Formaggia, L. and Quarteroni, A. and Veneziani, A.},
  date-modified	= {2012-05-01 13:06:48 +0000},
  Title		= {Cardiovascular Mathematics. Modeling and simulation of the
		  circulatory system},
  Year		= {2009},
  Publisher	= {Springer},
  Volume	= {1}
}

@Book{		  formaggia2010cardiovascular,
  Title		= {Cardiovascular Mathematics: Modeling and simulation of the
		  circulatory system},
  Author	= {Formaggia, Luca and Quarteroni, Alfio and Veneziani,
		  Alessandro},
  Volume	= {1},
  Year		= {2010},
  Publisher	= {Springer Science \& Business Media}
}

@Collection{	  formaggia_cardiovascular_2009,
  langid	= {english},
  Location	= {{Milano}},
  Title		= {Cardiovascular {{Mathematics}}},
  ISBN		= {978-88-470-1151-9 978-88-470-1152-6},
  URL		= {http://link.springer.com/10.1007/978-88-470-1152-6},
  Publisher	= {{Springer Milan}},
  URLDate	= {2019-02-17},
  Date		= {2009},
  Editor	= {Formaggia, Luca and Quarteroni, Alfio and Veneziani,
		  Alessandro},
  DOI		= {10.1007/978-88-470-1152-6}
}

###Collection{	  formaggia_cardiovascular_2009,
  langid	= {english},
  Location	= {{Milano}},
  Title		= {Cardiovascular {{Mathematics}}},
  ISBN		= {978-88-470-1151-9 978-88-470-1152-6},
  URL		= {http://link.springer.com/10.1007/978-88-470-1152-6},
  Publisher	= {{Springer Milan}},
  URLDate	= {2019-02-17},
  Year		= {2009},
  Editor	= {Formaggia, Luca and Quarteroni, Alfio and Veneziani,
		  Alessandro},
  DOI		= {10.1007/978-88-470-1152-6}
}

@InCollection{	  formaggia_multiscale_2009,
  langid	= {english},
  Location	= {{Milano}},
  Title		= {Multiscale Models of the Vascular System},
  ISBN		= {978-88-470-1152-6},
  URL		= {https://doi.org/10.1007/978-88-470-1152-6_11},
  Abstract	= {As we have illustrated in the previous chapters, there are
		  essentially three classes of models for the vascular
		  system: fully three dimensional models, based on the
		  Navier-Stokes (NS) equations, one dimensional models,
		  including the space dependence on the vessel axial
		  coordinate, based on the Euler (E) equations, and the
		  lumped parameter or zero-dimensional models, based on the
		  Kirchhoff laws (K) for hydraulic networks. Navier-Stokes
		  based models can account for many different features of
		  blood flow problems, such as the blood rheology (Chapter
		  6), the vascular wall dynamics (Chapter 3), the interaction
		  between blood flow and wall deformation (Chapters 8 and 9).
		  These models are perfectly adequate for investigating
		  qualitatively and quantitatively the effects of the
		  geometry on the blood flow (Chapters 5) and the possible
		  relations between local haemodynamics and the development
		  of some pathologies (Chapter 1). On the other hand, the
		  high computational costs (Chapters 2, 3 and 9) restrict
		  their use to cover few contiguous vascular districts
		  only.},
  BookTitle	= {Cardiovascular {{Mathematics}}: {{Modeling}} and
		  Simulation of the Circulatory System},
  Series	= {{{MS}}\&{{A}}},
  Publisher	= {{Springer Milan}},
  URLDate	= {2019-02-18},
  Year		= {2009},
  Pages		= {395-446},
  Author	= {Formaggia, Luca and Quarteroni, Alfio and Veneziani,
		  Alessandro},
  Editor	= {Formaggia, Luca and Quarteroni, Alfio and Veneziani,
		  Alessandro},
  DOI		= {10.1007/978-88-470-1152-6_11}
}

@Article{	  formaggia_new_2008,
  Title		= {A New Approach to Numerical Solution of Defective Boundary
		  Value Problems in Incompressible Fluid Dynamics},
  Volume	= {46},
  Number	= {6},
  JournalTitle	= {SIAM Journal on Numerical Analysis},
  Year		= {2008},
  Pages		= {2769--2794},
  Author	= {Formaggia, Luca and Veneziani, Alessandro and Vergara,
		  Christian}
}

@Article{	  formaggia_numerical_2002,
  Title		= {Numerical Treatment of Defective Boundary Conditions for
		  the Navier-Stokes Equations},
  Volume	= {40},
  Number	= {1},
  JournalTitle	= {SIAM Journal on Numerical Analysis},
  Year		= {2002},
  Pages		= {376--401},
  Author	= {Formaggia, Luca and Gerbeau, Jean-Frederic and Nobile,
		  Fabio and Quarteroni, Alfio}
}

@Article{	  formaggia_numerical_2006,
  Title		= {Numerical Modeling of {{1D}} Arterial Networks Coupled
		  with a Lumped Parameters Description of the Heart},
  Volume	= {9},
  Number	= {5},
  JournalTitle	= {Computer methods in biomechanics and biomedical
		  engineering},
  Year		= {2006},
  Pages		= {273--288},
  Author	= {Formaggia, Luca and Lamponi, Daniele and Tuveri,
		  Massimiliano and Veneziani, Alessandro}
}

@Article{	  forster-wall-ramm-07,
  Author	= {F{\"o}rster, C. and Wall, W.A. and Ramm, E.},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Number	= {7},
  Pages		= {1278--1293},
  Title		= {Artificial added mass instabilities in sequential
		  staggered coupling of nonlinear structures and
		  incompressible viscous flows},
  Volume	= {196},
  Year		= {2007}
}

###Article{	  forster-wall-ramm-07,
  Author	= {F{\"o}rster, C. and Wall, W.A. and Ramm, E.},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Number	= {7},
  Pages		= {1278--1293},
  Title		= {Artificial added mass instabilities in sequential
		  staggered coupling of nonlinear structures and
		  incompressible viscous flows},
  Volume	= {196},
  Year		= {2007}
}

@Article{	  foss-brady-00,
  Author	= {Foss, D.R. and Brady,J-F.},
  code		= {cel16},
  Journal	= {J. Fluid Mech.},
  Pages		= {167-200},
  Title		= {Structure, diffusion and rheology of Brownian suspensions
		  by Stokesian Dynamics simulation},
  Volume	= {407},
  Year		= {2000}
}

###Article{	  foss-brady-00,
  Author	= {Foss, D.R. and Brady,J-F.},
  code		= {cel16},
  Journal	= {J. Fluid Mech.},
  Pages		= {167-200},
  Title		= {Structure, diffusion and rheology of Brownian suspensions
		  by Stokesian Dynamics simulation},
  Volume	= {407},
  Year		= {2000}
}

@Article{	  fraccarollo12cardio,
  Title		= {Novel therapeutic approaches to post-infarction
		  remodelling},
  Author	= {Fraccarollo, Daniela and Galuppo, Paolo and Bauersachs,
		  Johann},
  Journal	= {Cardiovascular Research},
  Year		= {2012},
  Abstract	= {Adverse cardiac remodelling is a major cause of morbidity
		  and mortality following acute myocardial infarction (MI).
		  Mechanical and neurohumoral factors involved in structural
		  and molecular post-infarction remodelling were important
		  targets in research and treatment for years. More recently,
		  therapeutic strategies that address myocardial regeneration
		  and pathophysiological mechanisms of infarct wound healing
		  appear to be useful novel tools to prevent progressive
		  ventricular dilation, functional deterioration,
		  life-threatening arrhythmia, and heart failure. This review
		  provides an overview of future and emerging therapies for
		  cardiac wound healing and remodelling after MI.},
  DOI		= {10.1093/cvr/cvs109},
  File		= {fraccarollo12.pdf:fraccarollo12.pdf:PDF},
  ISSN		= {0008-6363},
  Publisher	= {The Oxford University Press},
  timestamp	= {2014/09/17}
}

@Article{	  franca-dutra-do-carmo-89,
  Author	= {Franca, L.P. and Dutra do Carmo, E.G.},
  Journal	= {Comp. Meth. Appl. Mech. Eng.},
  Pages		= {41-54},
  Title		= {The {Galerkin} gradient least-squares method},
  Volume	= {74},
  Year		= {1989}
}

###Article{	  franca-dutra-do-carmo-89,
  Author	= {Franca, L.P. and Dutra do Carmo, E.G.},
  Journal	= {Comp. Meth. Appl. Mech. Eng.},
  Pages		= {41-54},
  Title		= {The {Galerkin} gradient least-squares method},
  Volume	= {74},
  Year		= {1989}
}

@Article{	  franca-frey-92,
  Author	= {Franca, L.P. and Frey, S.L.},
  Journal	= {Comp. Meth. Appl. Mech. Eng.},
  Pages		= {209-233},
  Title		= {{Stabilized finite element methods~: II. The
		  incompressible Navier-Stokes equations}},
  Volume	= {99},
  Year		= {1992}
}

###Article{	  franca-frey-92,
  Author	= {Franca, L.P. and Frey, S.L.},
  Journal	= {Comp. Meth. Appl. Mech. Eng.},
  Pages		= {209-233},
  Title		= {{Stabilized finite element methods~: II. The
		  incompressible Navier-Stokes equations}},
  Volume	= {99},
  Year		= {1992}
}

@Article{	  franca-frey-hughes-92,
  Author	= {Franca, L.P. and Frey, S.L. and Hughes, T.J.R.},
  Journal	= {Comp. Meth. Appl. Mech. Eng.},
  Pages		= {253-276},
  Title		= {{Stabilized finite element methods~: I. Application to the
		  advective-diffusive model}},
  Volume	= {95},
  Year		= {1992}
}

###Article{	  franca-frey-hughes-92,
  Author	= {Franca, L.P. and Frey, S.L. and Hughes, T.J.R.},
  Journal	= {Comp. Meth. Appl. Mech. Eng.},
  Pages		= {253-276},
  Title		= {{Stabilized finite element methods~: I. Application to the
		  advective-diffusive model}},
  Volume	= {95},
  Year		= {1992}
}

@Article{	  franca-hughes-93,
  Author	= {Franca, L.P. and Hughes, T.J.R.},
  Journal	= {Comp. Meth. Appl. Mech. Eng.},
  Pages		= {285-298},
  Title		= {Convergence analyses of {Galerkin} least-squares methods
		  for symmetric advective-diffusive forms of the {Stokes} and
		  incompressible {Navier-Stokes} equations},
  Volume	= {105},
  Year		= {1993}
}

###Article{	  franca-hughes-93,
  Author	= {Franca, L.P. and Hughes, T.J.R.},
  Journal	= {Comp. Meth. Appl. Mech. Eng.},
  Pages		= {285-298},
  Title		= {Convergence analyses of {Galerkin} least-squares methods
		  for symmetric advective-diffusive forms of the {Stokes} and
		  incompressible {Navier-Stokes} equations},
  Volume	= {105},
  Year		= {1993}
}

@Unpublished{	  franchitti-02,
  Author	= {Franchitti, A.},
  Note		= {Universit{\'e} Paris 6},
  Title		= {Rapport de stage de {DEA} (in {French})}
}

###Unpublished{	  franchitti-02,
  Author	= {Franchitti, A.},
  Note		= {Universit{\'e} Paris 6},
  Title		= {Rapport de stage de {DEA} (in {French})}
}

@Article{	  franck2014arxiv,
  Title		= {Sparse Variational Bayesian Approximations for Nonlinear
		  Inverse Problems: applications in nonlinear elastography},
  Author	= {Franck, I.M. and Koutsourelakis, P.S.},
  Journal	= {arXiv preprint arXiv:1412.0473},
  Year		= {2014}
}

@Article{	  frank-1899,
  Author	= "Frank, O.",
  Title		= "{Die Grundform des arteriellen Pulses}",
  Journal	= "{Zeitschrift f\"ur Biologie}",
  Volume	= 37,
  Pages		= "483Ã526",
  Year		= "1899"
}

###Article{	  frank-1899,
  Author	= "Frank, O.",
  Title		= "{Die Grundform des arteriellen Pulses}",
  Journal	= "{Zeitschrift f\"ur Biologie}",
  Volume	= 37,
  Pages		= "483Ã526",
  Year		= "1899"
}

###Article{	  frank-1899,
  Author	= "Frank, O.",
  Title		= "{Die Grundform des arteriellen Pulses}",
  Journal	= "{Zeitschrift f\"ur Biologie}",
  Volume	= 37,
  Pages		= "483Ã526",
  Year		= "1899"
}

###Article{	  frank-1899,
  Author	= "Frank, O.",
  Title		= "{Die Grundform des arteriellen Pulses}",
  Journal	= "{Zeitschrift f\"ur Biologie}",
  Volume	= 37,
  Pages		= "483Ã526",
  Year		= "1899"
}

@Manual{	  freefem,
  Author	= {Hecht, F. and Pironneau, O. and Le Hyaric, A. and Ohtsuka,
		  K.},
  Organization	= {University of Paris 6},
  Title		= {FreeFem++ v. 2.11. User's Manual}
}

###Manual{	  freefem,
  Author	= {Hecht, F. and Pironneau, O. and Le Hyaric, A. and Ohtsuka,
		  K.},
  Organization	= {University of Paris 6},
  Title		= {FreeFem++ v. 2.11. User's Manual}
}

@InProceedings{	  frey-00,
  Author	= {P.J. Frey},
  BookTitle	= {Proc.of 9th Int. Meshing Roundtable, New Orleans, USA},
  Title		= {About surface remeshing},
  Year		= {2000}
}

###InProceedings{ frey-00,
  Author	= {P.J. Frey},
  BookTitle	= {Proc.of 9th Int. Meshing Roundtable, New Orleans, USA},
  Title		= {About surface remeshing},
  Year		= {2000}
}

@Article{	  frey-borouchaki-03,
  Author	= {P.J. Frey and H. Borouchaki},
  Journal	= {Int. J. Numer. Methods Engng.},
  Number	= {2},
  Pages		= {227-245},
  Title		= {Surface meshing using a geometric error estimate},
  Volume	= {58},
  Year		= {2003}
}

###Article{	  frey-borouchaki-03,
  Author	= {P.J. Frey and H. Borouchaki},
  Journal	= {Int. J. Numer. Methods Engng.},
  Number	= {2},
  Pages		= {227-245},
  Title		= {Surface meshing using a geometric error estimate},
  Volume	= {58},
  Year		= {2003}
}

@Book{		  frey-george-00,
  Author	= {Frey, P.J. and George,P.L.},
  Publisher	= {Herm{\`e}s Science Publ., Paris, Oxford},
  Title		= {Mesh generation. Application to finite elements},
  Year		= {2000}
}

###Book{	  frey-george-00,
  Author	= {Frey, P.J. and George,P.L.},
  Publisher	= {Herm{\`e}s Science Publ., Paris, Oxford},
  Title		= {Mesh generation. Application to finite elements},
  Year		= {2000}
}

@Article{	  frydrychowicz_interdependencies_2012,
  Title		= {Interdependencies of Aortic Arch Secondary Flow Patterns,
		  Geometry, and Age Analysed by 4-Dimensional Phase Contrast
		  Magnetic Resonance Imaging at 3 {{Tesla}}},
  Volume	= {22},
  Number	= {5},
  JournalTitle	= {European radiology},
  Year		= {2012},
  Pages		= {1122--1130},
  Author	= {Frydrychowicz, Alex and Berger, Alexander and Del Rio,
		  Alejandro Munoz and Russe, Maximilian F. and Bock, Jelena
		  and Harloff, Andreas and Markl, Michael}
}

@Article{	  fujita-kato-64,
  Author	= {Fujita, H. and Kato, T.},
  Journal	= {Arch. Rat. Mech. Anal.},
  Pages		= {269-315},
  Title		= {On the {Navier-Stokes} initial value problem, {I}},
  Volume	= {3},
  Year		= {1964}
}

###Article{	  fujita-kato-64,
  Author	= {Fujita, H. and Kato, T.},
  Journal	= {Arch. Rat. Mech. Anal.},
  Pages		= {269-315},
  Title		= {On the {Navier-Stokes} initial value problem, {I}},
  Volume	= {3},
  Year		= {1964}
}

@Article{	  funamoto-etal-08,
  Title		= {Numerical experiment for ultrasonic-measurement-integrated
		  simulation of three-dimensional unsteady blood flow},
  Author	= {Funamoto, K. and Hayase, T. and Saijo, Y. and Yambe, T.},
  Journal	= {Annals of biomedical engineering},
  Volume	= {36},
  Number	= {8},
  Pages		= {1383--1397},
  Year		= {2008},
  Publisher	= {Springer}
}


@article{funamoto2009numerical,
  title={Numerical experiment of transient and steady characteristics of ultrasonic-measurement-integrated simulation in three-dimensional blood flow analysis},
  author={Funamoto, Kenichi and Hayase, Toshiyuki and Saijo, Yoshifumi and Yambe, Tomoyuki},
  journal={Annals of biomedical engineering},
  volume={37},
  number={1},
  pages={34},
  year={2009},
  publisher={Springer}
}


###Article{	  funamoto-etal-08,
  Title		= {Numerical experiment for ultrasonic-measurement-integrated
		  simulation of three-dimensional unsteady blood flow},
  Author	= {Funamoto, K. and Hayase, T. and Saijo, Y. and Yambe, T.},
  Journal	= {Annals of biomedical engineering},
  Volume	= {36},
  Number	= {8},
  Pages		= {1383--1397},
  Year		= {2008},
  Publisher	= {Springer}
}

@Article{	  funamoto2009annals,
  Title		= {Numerical experiment for ultrasonic-measurement-integrated
		  simulation of three-dimensional unsteady blood flow},
  Author	= {Funamoto, K. and Hayase, T. and Saijo, Y. and Yambe, T.},
  Journal	= {Annals of biomedical engineering},
  Volume	= {36},
  Number	= {8},
  Pages		= {1383â1397},
  Year		= {2008},
  Publisher	= {EDP Sciences}
}

@Article{	  funamoto_numerical_2008,
  Title		= {Numerical Experiment for Ultrasonic-Measurement-Integrated
		  Simulation of Three-Dimensional Unsteady Blood Flow},
  Volume	= {36},
  Number	= {8},
  JournalTitle	= {Annals of biomedical engineering},
  Year		= {2008},
  Pages		= {1383},
  Author	= {Funamoto, Kenichi and Hayase, Toshiyuki and Saijo,
		  Yoshifumi and Yambe, Tomoyuki}
}

@Book{		  fung-93,
  Annote	= {hemodynamics, arterial wall, blood flow, muscle, heart,
		  blood vessels, bone, cartilage, erythrocyte, leucocyte},
  Author	= {Fung, Y. C.},
  code		= {hemo},
  Publisher	= {Springer},
  Title		= {Biomechanics, Mechanical properties of living tissues},
  Year		= {1993}
}

###Book{	  fung-93,
  Annote	= {hemodynamics, arterial wall, blood flow, muscle, heart,
		  blood vessels, bone, cartilage, erythrocyte, leucocyte},
  Author	= {Fung, Y. C.},
  code		= {hemo},
  Publisher	= {Springer},
  Title		= {Biomechanics, Mechanical properties of living tissues},
  Year		= {1993}
}

@Article{	  fung-kronek-patitucci-79,
  Author	= {Fung, Y.C. and Fronek, K. and Patitucci, P.},
  Title		= {Pseudoelasticity of arteries and the choice of its
		  mathematical expression},
  Journal	= {American Journal of Physiology},
  Volume	= {237},
  Year		= {1979},
  Number	= {5},
  Pages		= {H620-31},
  pubmedid	= {495769},
  ISSN		= {0002-9513}
}

###Article{	  fung-kronek-patitucci-79,
  Author	= {Fung, Y.C. and Fronek, K. and Patitucci, P.},
  Title		= {Pseudoelasticity of arteries and the choice of its
		  mathematical expression},
  Journal	= {American Journal of Physiology},
  Volume	= {237},
  Year		= {1979},
  Number	= {5},
  Pages		= {H620-31},
  URL		= {http://www.biomedsearch.com/nih/Pseudoelasticity-arteries-choice-its-mathematical/495769.html},
  pubmedid	= {495769},
  ISSN		= {0002-9513}
}

@Article{	  funke_variational_2016,
  Title		= {Variational Data Assimilation for Transient Blood Flow
		  Simulations},
  URL		= {https://arxiv.org/abs/1607.03013},
  JournalTitle	= {arXiv preprint arXiv:1607.03013},
  URLDate	= {2016-11-21},
  Year		= {2016},
  Author	= {Funke, S. W. and Nordaas, M. and Evju, Ãyvind and
		  Aln\textbackslash{}a es, M. S. and Mardal, K.-A.}
}

@Article{	  funke_variational_2019,
  Title		= {Variational data assimilation for transient blood flow
		  simulations: Cerebral aneurysms as an illustrative
		  example},
  Author	= {Funke, Simon Wolfgang and Nordaas, Magne and Evju,
		  {\O}yvind and Aln{\ae}s, Martin Sandve and Mardal, Kent
		  Andre},
  Journal	= {International journal for numerical methods in biomedical
		  engineering},
  Volume	= {35},
  Number	= {1},
  Pages		= {e3152},
  Year		= {2019},
  Publisher	= {Wiley Online Library}
}

@Article{	  furioli-lemarie-rieusset-terraneo-97,
  Author	= {Furioli, G. and Lemari{\'e}-Rieusset, P.G. and Terraneo,
		  E.},
  Journal	= {C. R. Acad. Sci.},
  Pages		= {1253-1256},
  Title		= {Sur l'unicit{\'e} dans {$L^3(R^3)$} des solutions mild des
		  {\'e}quations de {Navier-Stokes}},
  Volume	= {325},
  Year		= {1997}
}

###Article{	  furioli-lemarie-rieusset-terraneo-97,
  Author	= {Furioli, G. and Lemari{\'e}-Rieusset, P.G. and Terraneo,
		  E.},
  Journal	= {C. R. Acad. Sci.},
  Pages		= {1253-1256},
  Title		= {Sur l'unicit{\'e} dans {$L^3(R^3)$} des solutions mild des
		  {\'e}quations de {Navier-Stokes}},
  Volume	= {325},
  Year		= {1997}
}

@Article{	  gaca-etal-08,
  Author	= "Gaca, A.M. and Jaggers, J.J. and Dudley, L.T. and Bisset,
		  G.S.",
  Title		= "{Repair of Congenital Heart Disease: A Primer--Part 2}",
  Journal	= "Radiology",
  Volume	= 248,
  Pages		= "44-60",
  Number	= "1",
  Year		= "2008"
}

###Article{	  gaca-etal-08,
  Author	= "Gaca, A.M. and Jaggers, J.J. and Dudley, L.T. and Bisset,
		  G.S.",
  Title		= "{Repair of Congenital Heart Disease: A Primer--Part 2}",
  Journal	= "Radiology",
  Volume	= 248,
  Pages		= "44-60",
  Number	= "1",
  Year		= "2008"
}

@Article{	  galdi-heywood-shibata-97,
  Author	= {Galdi, G.P. and Heywood, J.G. and Shibata, Y.},
  Journal	= {Arch. Rat. Mech. Anal. },
  Pages		= {307-318},
  Title		= {On the global existence and convergence to steady state of
		  {Navier-Stokes} flow past an obstacle that is started from
		  rest},
  Volume	= {138},
  Year		= {1997}
}

###Article{	  galdi-heywood-shibata-97,
  Author	= {Galdi, G.P. and Heywood, J.G. and Shibata, Y.},
  Journal	= {Arch. Rat. Mech. Anal. },
  Pages		= {307-318},
  Title		= {On the global existence and convergence to steady state of
		  {Navier-Stokes} flow past an obstacle that is started from
		  rest},
  Volume	= {138},
  Year		= {1997}
}

@Article{	  galdi-padula-solonnikov-96,
  Author	= {Galdi, G.P. and Padula, M. and Solonnikov, V.A.},
  Journal	= {Indiana Univ. Math. J.},
  Number	= {4},
  Pages		= {961-994},
  Title		= {Existence, uniqueness and asymptotic behaviour of
		  solutions of steady-state {Navier-Stokes} equations in a
		  plane Aperture Domain},
  Volume	= {45},
  Year		= {1996}
}

###Article{	  galdi-padula-solonnikov-96,
  Author	= {Galdi, G.P. and Padula, M. and Solonnikov, V.A.},
  Journal	= {Indiana Univ. Math. J.},
  Number	= {4},
  Pages		= {961-994},
  Title		= {Existence, uniqueness and asymptotic behaviour of
		  solutions of steady-state {Navier-Stokes} equations in a
		  plane Aperture Domain},
  Volume	= {45},
  Year		= {1996}
}

@Article{	  gallo_use_2012,
  Title		= {On the Use of in Vivo Measured Flow Rates as Boundary
		  Conditions for Image-Based Hemodynamic Models of the Human
		  Aorta: Implications for Indicators of Abnormal Flow},
  Volume	= {40},
  ShortTitle	= {On the Use of in Vivo Measured Flow Rates as Boundary
		  Conditions for Image-Based Hemodynamic Models of the Human
		  Aorta},
  Number	= {3},
  JournalTitle	= {Annals of biomedical engineering},
  Year		= {2012},
  Pages		= {729--741},
  Author	= {Gallo, Diego and De Santis, Gianluca and Negri, Federica
		  and Tresoldi, D. and Ponzini, Raffaele and Massai, Diana
		  and Deriu, M. A. and Segers, Patrick and Verhegghe,
		  Benedict and Rizzo, G.}
}

@Article{	  gambaruto_reconstruction_2008,
  Title		= {Reconstruction of Shape and Its Effect on Flow in Arterial
		  Conduits},
  Volume	= {57},
  Number	= {5},
  JournalTitle	= {International Journal for Numerical Methods in Fluids},
  Year		= {2008},
  Pages		= {495--517},
  Author	= {Gambaruto, A. M. and Peir{\'o}, J. and Doorly, Denis J.
		  and Radaelli, A. G.}
}

@Article{	  gambaruto_sensitivity_2011,
  langid	= {english},
  Title		= {Sensitivity of Hemodynamics in a Patient Specific Cerebral
		  Aneurysm to Vascular Geometry and Blood Rheology.},
  Volume	= {8},
  ISSN		= {1547-1063},
  URL		= {http://europepmc.org/abstract/med/21631137},
  DOI		= {10.3934/mbe.2011.8.409},
  Abstract	= {Abstract: Newtonian and generalized Newtonian mathematical
		  models for blood flow are compared in two different
		  reconstructions of an anatomically realistic...},
  Number	= {2},
  JournalTitle	= {Mathematical biosciences and engineering : MBE},
  ShortJournal	= {Math Biosci Eng},
  URLDate	= {2019-02-28},
  Year		= {2011-04},
  Pages		= {409-423},
  Author	= {Gambaruto, A. M. and Janela, J. and Moura, A. and
		  Sequeira, A.},
  EPrintType	= {pmid},
  EPrint	= {21631137}
}

@Article{	  gamerman1997markov,
  Title		= {Markov Chain Monte Carlo: Statistical Simulation for
		  Bayesian Inference},
  Author	= {Gamerman, D},
  Journal	= {Chapman and},
  Volume	= {1669},
  Year		= {1997}
}

@Article{	  gamper-boesiger-kozerke-07,
  Author	= {Gamper, U. and Boesiger, P. and Kozerke, S.},
  Title		= {Diffusion imaging of the in vivo heart using spin echoes
		  -- considerations on bulk motion sensitivity},
  Journal	= {Magnetic Resonance in Medicine},
  Volume	= {57},
  Number	= {2},
  Publisher	= {Wiley Subscription Services, Inc., A Wiley Company},
  ISSN		= {1522-2594},
  Pages		= {331--337},
  Keywords	= {diffusion imaging, heart, spin echo, myocardial structure,
		  motion sensitivity},
  Year		= {2007}
}

@Article{	  garcia-1998,
  Author	= {Bonow, R.O. and Carabello, B.A. and de~Leon, A.C. and
		  Edmunds, L.H. and Fredderly, B.J. and Freed, M.D. and
		  Gaasch, W.H. and McKay, C.R.and Nishimura, R.A. and O'Gara,
		  P.T. and O'Rourke, R.A. and Rahimtoola, S.H.},
  Journal	= {Circulation},
  Pages		= {1949--1984},
  Title		= {Guidelines for the management of patients with valvular
		  heart disease: executive summary, a report of the American
		  College of Cardiology},
  Volume	= {98},
  Year		= {1998}
}

###Article{	  garcia-1998,
  Author	= {Bonow, R.O. and Carabello, B.A. and de~Leon, A.C. and
		  Edmunds, L.H. and Fredderly, B.J. and Freed, M.D. and
		  Gaasch, W.H. and McKay, C.R.and Nishimura, R.A. and O'Gara,
		  P.T. and O'Rourke, R.A. and Rahimtoola, S.H.},
  Journal	= {Circulation},
  Pages		= {1949--1984},
  Title		= {Guidelines for the management of patients with valvular
		  heart disease: executive summary, a report of the American
		  College of Cardiology},
  Volume	= {98},
  Year		= {1998}
}

@Article{	  garcia-2003,
  Author	= {Garcia, D. and Dumesnil, J. and Durand, L.-G. and Kadem,
		  L. and Pibarot, P.},
  Journal	= {Jour. American College of Cardiology},
  Number	= {3},
  Pages		= {435--445},
  Title		= {Discrepancies between catheter and Doppler estimates of
		  valve effective orifice area can be predicted from the
		  pressure recovery phenomenon},
  Volume	= {41},
  Year		= {2003}
}

###Article{	  garcia-2003,
  Author	= {Garcia, D. and Dumesnil, J. and Durand, L.-G. and Kadem,
		  L. and Pibarot, P.},
  Journal	= {Jour. American College of Cardiology},
  Number	= {3},
  Pages		= {435--445},
  Title		= {Discrepancies between catheter and Doppler estimates of
		  valve effective orifice area can be predicted from the
		  pressure recovery phenomenon},
  Volume	= {41},
  Year		= {2003}
}

@Article{	  garcia_discrepancies_2003,
  Title		= {Discrepancies between Catheter and {{Doppler}} Estimates
		  of Valve Effective Orifice Area Can Be Predicted from the
		  Pressure Recovery Phenomenon: Practical Implications with
		  Regard to Quantification of Aortic Stenosis Severity},
  Volume	= {41},
  ShortTitle	= {Discrepancies between Catheter and {{Doppler}} Estimates
		  of Valve Effective Orifice Area Can Be Predicted from the
		  Pressure Recovery Phenomenon},
  Number	= {3},
  JournalTitle	= {Journal of the American College of Cardiology},
  Year		= {2003},
  Pages		= {435--442},
  Author	= {Garcia, Damien and Dumesnil, Jean G. and Durand,
		  Louis-Gilles and Kadem, Lyes and Pibarot, Philippe}
}

@Article{	  garrido1994,
  Title		= {Anisotropy of water diffusion in the myocardium of the
		  rat.},
  Author	= {Garrido, L. and Wedeen, V. J. and Kwong, K. K. and
		  Spencer, U. M. and Kantor, H. L.},
  Journal	= {Circulation research},
  Volume	= {74},
  Number	= {5},
  Pages		= {789--793},
  Year		= {1994},
  Publisher	= {Am Heart Assoc}
}

@Article{	  gaudron1993circ,
  Title		= {Progressive left ventricular dysfunction and remodeling
		  after myocardial infarction. Potential mechanisms and early
		  predictors.},
  Author	= {Gaudron, P and Eilles, C and Kugler, I and Ertl, G},
  Journal	= {Circulation},
  Year		= {1993},
  Number	= {3},
  Pages		= {755-63},
  Volume	= {87},
  Abstract	= {BACKGROUND Left ventricular enlargement and the
		  development of chronic heart failure are potent predictors
		  of survival in patients after myocardial infarction.
		  Prospective studies relating progressive ventricular
		  enlargement in individual patients to global and regional
		  cardiac dysfunction and the onset of late chronic heart
		  failure are not available. It was the aim of this study to
		  define the relation between left ventricular dilatation and
		  global and regional cardiac dysfunction and to identify
		  early predictors of enlargement and chronic heart failure
		  in patients after myocardial infarction.METHODS AND RESULTS
		  Left ventricular volumes, regional area shrinkage fraction
		  in 18 predefined sectors (gated single photon emission
		  computed tomography), global ejection fraction, and
		  hemodynamics at rest and during exercise (supine bicycle,
		  50 W, 4 minutes, Swan-Ganz catheter) were assessed
		  prospectively 4 days, 4 weeks, 6 months, and 1.5 and 3
		  years after first myocardial infarction. Seventy patients
		  were assigned to groups with progressive, limited, or no
		  dilatation. Patients without dilatation (n = 38) maintained
		  normal volumes and hemodynamics until 3 years. With limited
		  dilatation (n = 18), left ventricular volume increased up
		  to 4 weeks after infarction and stabilized thereafter;
		  depressed stroke volume was restored 4 weeks after
		  infarction and then remained stable at rest. Wedge pressure
		  during exercise, however, progressively increased. With
		  progressive dilatation (n = 14), depressed cardiac and
		  stroke indexes were also restored by 4 weeks but
		  progressively deteriorated thereafter. Area shrinkage
		  fraction as an estimate of regional left ventricular
		  function in normokinetic sectors at 4 days gradually
		  deteriorated during 3 years, but hypokinetic and dyskinetic
		  sectors remained unchanged. Global ejection fraction fell
		  after 1.5 years, whereas right atrial pressure, wedge
		  pressure, and systemic vascular resistance increased. By
		  multivariate analysis, ejection fraction and stroke index
		  at 4 days, ventriculographic infarct size, infarct
		  location, and Thrombolysis in Myocardial Infarction trial
		  grade of infarct artery perfusion were significant
		  predictors of progressive ventricular enlargement and
		  chronic dysfunction.CONCLUSIONS Almost 26% of patients may
		  develop limited left ventricular dilatation within 4 weeks
		  after first infarction, which helps to restore cardiac
		  index and stroke index at rest and to preserve exercise
		  performance and therefore remains compensatory. A somewhat
		  smaller group (20%) develops progressive structural left
		  ventricular dilatation, which is compensatory at first,
		  then progresses to noncompensatory dilatation, and finally
		  results in severe global left ventricular dysfunction. In
		  these patients, depression of global ejection fraction
		  probably results from impairment of function of initially
		  normally contracting myocardium. Early predictors from
		  multivariate analysis allow identification of patients at
		  high risk for progressive left ventricular dilatation and
		  chronic ventricular dysfunction within 4 weeks after acute
		  infarction.},
  DOI		= {10.1161/01.CIR.87.3.755},
  EPrint	= {http://circ.ahajournals.org/content/87/3/755.full.pdf+html},
  File		= {gaudron93.pdf:gaudron93.pdf:PDF},
  timestamp	= {2015/09/13},
  URL		= {http://circ.ahajournals.org/content/87/3/755.abstract}
}

@Report{	  gbd_2015_mortality_and_causes_of_death_collaborators_global_2016,
  langid	= {english},
  Title		= {Global, Regional, and National Life Expectancy, All-Cause
		  Mortality, and Cause-Specific Mortality for 249 Causes of
		  Death, 1980-2015: A Systematic Analysis for the {{Global
		  Burden}} of {{Disease Study}} 2015},
  ShortTitle	= {Global, Regional, and National Life Expectancy, All-Cause
		  Mortality, and Cause-Specific Mortality for 249 Causes of
		  Death, 1980-2015},
  Abstract	= {BACKGROUND: Improving survival and extending the longevity
		  of life for all populations requires timely, robust
		  evidence on local mortality levels and trends. The Global
		  Burden of Disease 2015 Study (GBD 2015) provides a
		  comprehensive assessment of all-cause and cause-specific
		  mortality for 249 causes in 195 countries and territories
		  from 1980 to 2015. These results informed an in-depth
		  investigation of observed and expected mortality patterns
		  based on sociodemographic measures. METHODS: We estimated
		  all-cause mortality by age, sex, geography, and year using
		  an improved analytical approach originally developed for
		  GBD 2013 and GBD 2010. Improvements included refinements to
		  the estimation of child and adult mortality and
		  corresponding uncertainty, parameter selection for under-5
		  mortality synthesis by spatiotemporal Gaussian process
		  regression, and sibling history data processing. We also
		  expanded the database of vital registration, survey, and
		  census data to 14\hphantom{,}294 geography-year datapoints.
		  For GBD 2015, eight causes, including Ebola virus disease,
		  were added to the previous GBD cause list for mortality. We
		  used six modelling approaches to assess cause-specific
		  mortality, with the Cause of Death Ensemble Model (CODEm)
		  generating estimates for most causes. We used a series of
		  novel analyses to systematically quantify the drivers of
		  trends in mortality across geographies. First, we assessed
		  observed and expected levels and trends of cause-specific
		  mortality as they relate to the Socio-demographic Index
		  (SDI), a summary indicator derived from measures of income
		  per capita, educational attainment, and fertility. Second,
		  we examined factors affecting total mortality patterns
		  through a series of counterfactual scenarios, testing the
		  magnitude by which population growth, population age
		  structures, and epidemiological changes contributed to
		  shifts in mortality. Finally, we attributed changes in life
		  expectancy to changes in cause of death. We documented each
		  step of the GBD 2015 estimation processes, as well as data
		  sources, in accordance with Guidelines for Accurate and
		  Transparent Health Estimates Reporting (GATHER). FINDINGS:
		  Globally, life expectancy from birth increased from 61Â·7
		  years (95\% uncertainty interval 61Â·4-61Â·9) in 1980 to
		  71Â·8 years (71Â·5-72Â·2) in 2015. Several countries in
		  sub-Saharan Africa had very large gains in life expectancy
		  from 2005 to 2015, rebounding from an era of exceedingly
		  high loss of life due to HIV/AIDS. At the same time, many
		  geographies saw life expectancy stagnate or decline,
		  particularly for men and in countries with rising mortality
		  from war or interpersonal violence. From 2005 to 2015, male
		  life expectancy in Syria dropped by 11Â·3 years
		  (3Â·7-17Â·4), to 62Â·6 years (56Â·5-70Â·2). Total deaths
		  increased by 4Â·1\% (2Â·6-5Â·6) from 2005 to 2015, rising
		  to 55Â·8 million (54Â·9 million to 56Â·6 million) in 2015,
		  but age-standardised death rates fell by 17Â·0\%
		  (15Â·8-18Â·1) during this time, underscoring changes in
		  population growth and shifts in global age structures. The
		  result was similar for non-communicable diseases (NCDs),
		  with total deaths from these causes increasing by 14Â·1\%
		  (12Â·6-16Â·0) to 39Â·8 million (39Â·2 million to 40Â·5
		  million) in 2015, whereas age-standardised rates decreased
		  by 13Â·1\% (11Â·9-14Â·3). Globally, this mortality pattern
		  emerged for several NCDs, including several types of
		  cancer, ischaemic heart disease, cirrhosis, and Alzheimer's
		  disease and other dementias. By contrast, both total deaths
		  and age-standardised death rates due to communicable,
		  maternal, neonatal, and nutritional conditions
		  significantly declined from 2005 to 2015, gains largely
		  attributable to decreases in mortality rates due to
		  HIV/AIDS (42Â·1\%, 39Â·1-44Â·6), malaria (43Â·1\%,
		  34Â·7-51Â·8), neonatal preterm birth complications
		  (29Â·8\%, 24Â·8-34Â·9), and maternal disorders (29Â·1\%,
		  19Â·3-37Â·1). Progress was slower for several causes, such
		  as lower respiratory infections and nutritional
		  deficiencies, whereas deaths increased for others,
		  including dengue and drug use disorders. Age-standardised
		  death rates due to injuries significantly declined from
		  2005 to 2015, yet interpersonal violence and war claimed
		  increasingly more lives in some regions, particularly in
		  the Middle East. In 2015, rotaviral enteritis (rotavirus)
		  was the leading cause of under-5 deaths due to diarrhoea
		  (146\hphantom{,}000 deaths,
		  118\hphantom{,}000-183\hphantom{,}000) and pneumococcal
		  pneumonia was the leading cause of under-5 deaths due to
		  lower respiratory infections (393\hphantom{,}000 deaths,
		  228\hphantom{,}000-532\hphantom{,}000), although
		  pathogen-specific mortality varied by region. Globally, the
		  effects of population growth, ageing, and changes in
		  age-standardised death rates substantially differed by
		  cause. Our analyses on the expected associations between
		  cause-specific mortality and SDI show the regular shifts in
		  cause of death composition and population age structure
		  with rising SDI. Country patterns of premature mortality
		  (measured as years of life lost [YLLs]) and how they differ
		  from the level expected on the basis of SDI alone revealed
		  distinct but highly heterogeneous patterns by region and
		  country or territory. Ischaemic heart disease, stroke, and
		  diabetes were among the leading causes of YLLs in most
		  regions, but in many cases, intraregional results sharply
		  diverged for ratios of observed and expected YLLs based on
		  SDI. Communicable, maternal, neonatal, and nutritional
		  diseases caused the most YLLs throughout sub-Saharan
		  Africa, with observed YLLs far exceeding expected YLLs for
		  countries in which malaria or HIV/AIDS remained the leading
		  causes of early death. INTERPRETATION: At the global scale,
		  age-specific mortality has steadily improved over the past
		  35 years; this pattern of general progress continued in the
		  past decade. Progress has been faster in most countries
		  than expected on the basis of development measured by the
		  SDI. Against this background of progress, some countries
		  have seen falls in life expectancy, and age-standardised
		  death rates for some causes are increasing. Despite
		  progress in reducing age-standardised death rates,
		  population growth and ageing mean that the number of deaths
		  from most non-communicable causes are increasing in most
		  countries, putting increased demands on health systems.
		  FUNDING: Bill \& Melinda Gates Foundation.},
  Year		= {2016-10-08},
  Pages		= {1459-1544},
  Author	= {{GBD 2015 Mortality and Causes of Death Collaborators}},
  EPrintType	= {pmid},
  EPrint	= {27733281},
  pmcid		= {PMC5388903}
}

@Article{	  gee-foerster-wall-10,
  Author	= {Gee, M. W. and F\"orster, Ch. and Wall, W. A.},
  Title		= {A computational strategy for prestressing patient-specific
		  biomechanical problems under finite deformation},
  Journal	= {International Journal for Numerical Methods in Biomedical
		  Engineering},
  Volume	= {26},
  Number	= {1},
  Publisher	= {John Wiley & Sons, Ltd.},
  ISSN		= {2040-7947},
  DOI		= {10.1002/cnm.1236},
  Pages		= {52--72},
  Keywords	= {inverse design analysis, prestressing, prestraining,
		  patient-specific modeling, biomechanics, abdominal aortic
		  aneurysm},
  Year		= {2010}
}

###Article{	  gee-foerster-wall-10,
  Author	= {Gee, M. W. and F\"orster, Ch. and Wall, W. A.},
  Title		= {A computational strategy for prestressing patient-specific
		  biomechanical problems under finite deformation},
  Journal	= {International Journal for Numerical Methods in Biomedical
		  Engineering},
  Volume	= {26},
  Number	= {1},
  Publisher	= {John Wiley & Sons, Ltd.},
  ISSN		= {2040-7947},
  URL		= {http://dx.doi.org/10.1002/cnm.1236},
  DOI		= {10.1002/cnm.1236},
  Pages		= {52--72},
  Keywords	= {inverse design analysis, prestressing, prestraining,
		  patient-specific modeling, biomechanics, abdominal aortic
		  aneurysm},
  Year		= {2010}
}

@Article{	  gee2010ijnmbe,
  Title		= {A computational strategy for prestressing patient-specific
		  biomechanical problems under finite deformation},
  Author	= {Gee, MW and F{\"o}rster, Ch and Wall, WA},
  Journal	= {International Journal for Numerical Methods in Biomedical
		  Engineering},
  Volume	= {26},
  Number	= {1},
  Pages		= {52--72},
  Year		= {2010},
  Publisher	= {Wiley Online Library}
}

@Article{	  geerts2002ajp,
  Title		= {Characterization of the normal cardiac myofiber field in
		  goat measured with MR-diffusion tensor imaging},
  Author	= {Geerts, L. and Bovendeerd, P. and Nicolay, K. and Arts,
		  T.},
  Journal	= {American Journal of Physiology - Heart and Circulatory
		  Physiology},
  Year		= {2002},
  Number	= {1},
  Pages		= {H139--H145},
  Volume	= {283},
  Abstract	= {Cardiac myofiber orientation is a crucial determinant of
		  the distribution of myocardial wall stress. Myofiber
		  orientation is commonly quantified by helix and transverse
		  angles. Accuracy of reported helix angles is limited.
		  Reported transverse angle data are incomplete. We measured
		  cardiac myofiber orientation postmortem in five healthy
		  goat hearts using magnetic resonance-diffusion tensor
		  imaging. A novel local wall-bound coordinate system was
		  derived from the characteristics of the fiber field. The
		  transmural course of the helix angle corresponded to data
		  reported in literature. The mean midwall transverse angle
		  ranged from -12 {\textpm} 4{\textdegree} near the apex to
		  +9.0 {\textpm} 4{\textdegree} near the base of the left
		  ventricle, which is in agreement with the course predicted
		  by Rijcken et al. (18) using a uniform load hypothesis. The
		  divergence of the myofiber field was computed, which is a
		  measure for the extent to which wall stress is transmitted
		  through the myofiber alone. It appeared to be \&lt;0.07
		  mm-1 throughout the myocardial walls except for the fusion
		  sites between the left and right ventricles and the
		  insertion sites of the papillary muscles.},
  DOI		= {10.1152/ajpheart.00968.2001},
  File		= {geerts02.pdf:geerts02.pdf:PDF},
  Publisher	= {American Physiological Society},
  timestamp	= {2015/09/22}
}

@Article{	  geerts2002characterization,
  Author	= {Geerts, Liesbeth and Bovendeerd, Peter and Nicolay, Klaas
		  and Arts, Theo},
  Title		= {Characterization of the normal cardiac myofiber field in
		  goat measured with MR-diffusion tensor imaging},
  Journal	= {American Journal of Physiology-Heart and Circulatory
		  Physiology},
  Year		= {2002},
  Volume	= {52},
  Pages		= {H139},
  Number	= {1},
  Publisher	= {[Bethesda, Md.] American Physiological Society.}
}

@Article{	  genet2015abe,
  Title		= {Modeling Pathologies of Diastolic and Systolic Heart
		  Failure},
  Author	= {Genet, M. and Lee, L.C. and Baillargeon, B. and Guccione,
		  J.M. and Kuhl, E.},
  Journal	= {Annals of Biomedical Engineering},
  Year		= {2015},
  Pages		= {1-16},
  DOI		= {10.1007/s10439-015-1351-2},
  File		= {genet15.pdf:genet15.pdf:PDF},
  ISSN		= {0090-6964},
  Keywords	= {Cardiac modeling; Hypertrophy; Growth; Hypertension;
		  Finite element method},
  Language	= {English},
  Publisher	= {Springer US},
  timestamp	= {2015/09/21},
  URL		= {http://dx.doi.org/10.1007/s10439-015-1351-2}
}

@InCollection{	  george-04,
  Address	= {John Wiley \& Sons},
  Author	= {George, P.L. and Borouchaki, H. and Frey, P.J. and Laug,
		  P. and Saltel,E.},
  BookTitle	= {Encyclopedia of computational mechanics},
  Editor	= {Stein, E. and de Borst, R. and Hughes, T.J.R.},
  Publisher	= {Higher Education Press},
  Title		= {Mesh generation and mesh adaptivity~: theory, techniques},
  Year		= {2004}
}

###InCollection{  george-04,
  Address	= {John Wiley \& Sons},
  Author	= {George, P.L. and Borouchaki, H. and Frey, P.J. and Laug,
		  P. and Saltel,E.},
  BookTitle	= {Encyclopedia of computational mechanics},
  Editor	= {Stein, E. and de Borst, R. and Hughes, T.J.R.},
  Publisher	= {Higher Education Press},
  Title		= {Mesh generation and mesh adaptivity~: theory, techniques},
  Year		= {2004}
}

@Article{	  georgescu-79,
  Author	= {Georgescu, V.},
  Journal	= {Annali di Matematica Pura ed. Applicata},
  Month		= {April},
  Number	= {122},
  Pages		= {159-198},
  Title		= {Some boundary value problems for differential forms on
		  compact {Riemannian} manifolds},
  Volume	= {4},
  Year		= {1979}
}

###Article{	  georgescu-79,
  Author	= {Georgescu, V.},
  Journal	= {Annali di Matematica Pura ed. Applicata},
  Month		= {April},
  Number	= {122},
  Pages		= {159-198},
  Title		= {Some boundary value problems for differential forms on
		  compact {Riemannian} manifolds},
  Volume	= {4},
  Year		= {1979}
}

@Article{	  gerbeau-00,
  Author	= {Gerbeau, J-F.},
  Journal	= {Numerische Mathematik},
  Number	= {1},
  Pages		= {83-111},
  Title		= {A stabilized finite element method for the incompressible
		  magnetohydrodynamic equations},
  Volume	= {87},
  Year		= {2000}
}

###Article{	  gerbeau-00,
  Author	= {Gerbeau, J-F.},
  Journal	= {Numerische Mathematik},
  Number	= {1},
  Pages		= {83-111},
  Title		= {A stabilized finite element method for the incompressible
		  magnetohydrodynamic equations},
  Volume	= {87},
  Year		= {2000}
}

@InProceedings{	  gerbeau-01,
  Author	= {Gerbeau, J-F.},
  BookTitle	= {Proceedings of the First M.I.T. Conference on
		  Computational Fluid and Solid Mechanics},
  Pages		= {1184-1187},
  Publisher	= {Elsevier},
  Title		= {Numerical simulations in magnetohydrodynamics with free
		  surfaces},
  Volume	= 2,
  Year		= 2001
}

###InProceedings{ gerbeau-01,
  Author	= {Gerbeau, J-F.},
  BookTitle	= {Proceedings of the First M.I.T. Conference on
		  Computational Fluid and Solid Mechanics},
  Pages		= {1184-1187},
  Publisher	= {Elsevier},
  Title		= {Numerical simulations in magnetohydrodynamics with free
		  surfaces},
  Volume	= 2,
  Year		= 2001
}

@InProceedings{	  gerbeau-03,
  Author	= {Gerbeau, J-F.},
  BookTitle	= {Proceedings of the second M.I.T. Conference on
		  Computational Fluid and Solid Mechanics},
  Editor	= {K.J. Bathe},
  Pages		= {1355-1357},
  Publisher	= {Elsevier},
  Title		= {A quasi-{Newton} method for a fluid-structure problem
		  arising in blood flows},
  Year		= {2003}
}

###InProceedings{ gerbeau-03,
  Author	= {Gerbeau, J-F.},
  BookTitle	= {Proceedings of the second M.I.T. Conference on
		  Computational Fluid and Solid Mechanics},
  Editor	= {K.J. Bathe},
  Pages		= {1355-1357},
  Publisher	= {Elsevier},
  Title		= {A quasi-{Newton} method for a fluid-structure problem
		  arising in blood flows},
  Year		= {2003}
}

@PhdThesis{	  gerbeau-98,
  Author	= {Gerbeau, J-F.},
  School	= {Ecole Nationale des Ponts et Chauss{\'e}es},
  Title		= {Probl{\`e}mes math{\'e}\-matiques et num{\'e}\-riques
		  pos{\'e}s par la mod{\'e}li\-sation de l'{\'e}lec\-trolyse
		  de l'aluminium},
  Type		= {Th{\`e}se},
  Year		= {1998}
}

###PhdThesis{	  gerbeau-98,
  Author	= {Gerbeau, J-F.},
  School	= {Ecole Nationale des Ponts et Chauss{\'e}es},
  Title		= {Probl{\`e}mes math{\'e}\-matiques et num{\'e}\-riques
		  pos{\'e}s par la mod{\'e}li\-sation de l'{\'e}lec\-trolyse
		  de l'aluminium},
  Type		= {Th{\`e}se},
  Year		= {1998}
}

@InProceedings{	  gerbeau-98b,
  Author	= {Gerbeau, J-F.},
  BookTitle	= {Proceedings of the Fourth European Computational Fluid
		  Dynamics, ECCOMAS 98},
  Pages		= {821--825},
  Publisher	= {Wiley},
  Title		= {Comparison of numerical methods for solving a
		  magnetostatic problem. Application to the
		  magnetohydrodynamic equations},
  Year		= {1998}
}

###InProceedings{ gerbeau-98b,
  Author	= {Gerbeau, J-F.},
  BookTitle	= {Proceedings of the Fourth European Computational Fluid
		  Dynamics, ECCOMAS 98},
  Pages		= {821--825},
  Publisher	= {Wiley},
  Title		= {Comparison of numerical methods for solving a
		  magnetostatic problem. Application to the
		  magnetohydrodynamic equations},
  Year		= {1998}
}

@Unpublished{	  gerbeau-glinsky-larrouturou-97,
  Author	= {Gerbeau, J-F. and Glinsky-Olivier, N. and Larrouturou,
		  B.},
  Note		= {Rapport de recherche INRIA No.3132, 1997 },
  Title		= {Semi-implicit Roe-type fluxes for low-Mach number flows}
}

###Unpublished{	  gerbeau-glinsky-larrouturou-97,
  Author	= {Gerbeau, J-F. and Glinsky-Olivier, N. and Larrouturou,
		  B.},
  Note		= {Rapport de recherche INRIA No.3132, 1997 },
  Title		= {Semi-implicit Roe-type fluxes for low-Mach number flows}
}

@Article{	  gerbeau-le-bris-00,
  Author	= {Gerbeau, J-F. and Le Bris, C.},
  Journal	= {Calcolo},
  Number	= {1},
  Pages		= {1-20},
  Title		= {Comparison between two numerical methods for a
		  magnetostatic problem},
  Volume	= {37},
  Year		= {2000}
}

###Article{	  gerbeau-le-bris-00,
  Author	= {Gerbeau, J-F. and Le Bris, C.},
  Journal	= {Calcolo},
  Number	= {1},
  Pages		= {1-20},
  Title		= {Comparison between two numerical methods for a
		  magnetostatic problem},
  Volume	= {37},
  Year		= {2000}
}

@Article{	  gerbeau-le-bris-00b,
  Author	= {Gerbeau, J-F. and Le Bris, C.},
  Journal	= {Appl. Math. Lett.},
  Number	= {3},
  Pages		= {107-112},
  Title		= {A basic remark on some {Navier-Stokes} equations with body
		  forces},
  Volume	= {13},
  Year		= {2000}
}

###Article{	  gerbeau-le-bris-00b,
  Author	= {Gerbeau, J-F. and Le Bris, C.},
  Journal	= {Appl. Math. Lett.},
  Number	= {3},
  Pages		= {107-112},
  Title		= {A basic remark on some {Navier-Stokes} equations with body
		  forces},
  Volume	= {13},
  Year		= {2000}
}

@InBook{	  gerbeau-le-bris-00c,
  Author	= {Gerbeau, J-F. and Le Bris, C.},
  BookTitle	= {Evolution Equations and Their Applications in Physical and
		  Life Sciences},
  Pages		= {355-367},
  Publisher	= {Marcel Dekker Inc.},
  Series	= {Lecture Notes in Pure and Applied Mathematics},
  Title		= {Mathematical study of a coupled system arising in
		  Magnetohydrodynamics},
  Volume	= {215},
  Year		= {2000}
}

###InBook{	  gerbeau-le-bris-00c,
  Author	= {Gerbeau, J-F. and Le Bris, C.},
  BookTitle	= {Evolution Equations and Their Applications in Physical and
		  Life Sciences},
  Pages		= {355-367},
  Publisher	= {Marcel Dekker Inc.},
  Series	= {Lecture Notes in Pure and Applied Mathematics},
  Title		= {Mathematical study of a coupled system arising in
		  Magnetohydrodynamics},
  Volume	= {215},
  Year		= {2000}
}

@Article{	  gerbeau-le-bris-97,
  Author	= {Gerbeau, J-F. and Le Bris, C.},
  Journal	= {Advances in Differential Equations},
  Month		= {May},
  Number	= {3},
  Pages		= {427-452},
  Title		= {Existence of solution for a density-dependent
		  magnetohydrodynamic equation},
  Volume	= {2},
  Year		= {1997}
}

###Article{	  gerbeau-le-bris-97,
  Author	= {Gerbeau, J-F. and Le Bris, C.},
  Journal	= {Advances in Differential Equations},
  Month		= {May},
  Number	= {3},
  Pages		= {427-452},
  Title		= {Existence of solution for a density-dependent
		  magnetohydrodynamic equation},
  Volume	= {2},
  Year		= {1997}
}

@Article{	  gerbeau-le-bris-99,
  Author	= {Gerbeau, J-F. and Le Bris, C.},
  Journal	= {Appl. Math. Lett.},
  Pages		= {53-57},
  Title		= {On a coupled system arising in Magnetohydrodynamics},
  Volume	= {12},
  Year		= {1999}
}

###Article{	  gerbeau-le-bris-99,
  Author	= {Gerbeau, J-F. and Le Bris, C.},
  Journal	= {Appl. Math. Lett.},
  Pages		= {53-57},
  Title		= {On a coupled system arising in Magnetohydrodynamics},
  Volume	= {12},
  Year		= {1999}
}

@Article{	  gerbeau-le-bris-99b,
  Author	= {Gerbeau, J-F. and Le Bris, C.},
  Journal	= {Differential Integral Equations},
  Number	= {5},
  Pages		= {691-740},
  Title		= {On the long time behaviour of the solution to the
		  two-fluids incompressible Navier-Stokes equations},
  Volume	= {12},
  Year		= {1999}
}

###Article{	  gerbeau-le-bris-99b,
  Author	= {Gerbeau, J-F. and Le Bris, C.},
  Journal	= {Differential Integral Equations},
  Number	= {5},
  Pages		= {691-740},
  Title		= {On the long time behaviour of the solution to the
		  two-fluids incompressible Navier-Stokes equations},
  Volume	= {12},
  Year		= {1999}
}

@Article{	  gerbeau-le-bris-bercovier-97,
  Author	= {Gerbeau, J-F. and Le Bris, C. and Bercovier, M.},
  Journal	= {Int. Jour. Num. Meth. Fluids},
  Month		= {October},
  Pages		= {679-695},
  Title		= {Spurious velocities in the steady flow of an
		  incompressible fluid subjected to external forces},
  Volume	= {25},
  Year		= {1997}
}

###Article{	  gerbeau-le-bris-bercovier-97,
  Author	= {Gerbeau, J-F. and Le Bris, C. and Bercovier, M.},
  Journal	= {Int. Jour. Num. Meth. Fluids},
  Month		= {October},
  Pages		= {679-695},
  Title		= {Spurious velocities in the steady flow of an
		  incompressible fluid subjected to external forces},
  Volume	= {25},
  Year		= {1997}
}

@Article{	  gerbeau-le-bris-lelievre-04,
  Author	= {Gerbeau, J-F. and Leli{\`e}vre, T. and Le Bris, C.},
  Journal	= {Computers and Fluids},
  Pages		= {801-814},
  Title		= {Modeling and simulation of the industrial production of
		  aluminium: the nonlinear approach},
  Volume	= {33},
  Year		= {2004}
}

###Article{	  gerbeau-le-bris-lelievre-04,
  Author	= {Gerbeau, J-F. and Leli{\`e}vre, T. and Le Bris, C.},
  Journal	= {Computers and Fluids},
  Pages		= {801-814},
  Title		= {Modeling and simulation of the industrial production of
		  aluminium: the nonlinear approach},
  Volume	= {33},
  Year		= {2004}
}

@Unpublished{	  gerbeau-lelievre,
  Author	= {Gerbeau, J-F. and Leli{\`e}vre, T.},
  Note		= {(en pr{\'e}paration)},
  Title		= {Stabilized finite elements on moving domains}
}

###Unpublished{	  gerbeau-lelievre,
  Author	= {Gerbeau, J-F. and Leli{\`e}vre, T.},
  Note		= {(en pr{\'e}paration)},
  Title		= {Stabilized finite elements on moving domains}
}

@Article{	  gerbeau-lelievre-le-bris-02,
  Author	= {Gerbeau, J-F. and Leli{\`e}vre, T. and Le Bris, C. and
		  Ligonesche, N.},
  Journal	= {Light Metal},
  Pages		= {p. 483-487},
  Title		= {Metal pad roll instabilities},
  Year		= {2002}
}

###Article{	  gerbeau-lelievre-le-bris-02,
  Author	= {Gerbeau, J-F. and Leli{\`e}vre, T. and Le Bris, C. and
		  Ligonesche, N.},
  Journal	= {Light Metal},
  Pages		= {p. 483-487},
  Title		= {Metal pad roll instabilities},
  Year		= {2002}
}

@Article{	  gerbeau-lelievre-le-bris-02b,
  Author	= {Gerbeau, J-F. and Leli{\`e}vre, T. and Le Bris, C.},
  Journal	= {Fundamental and Applied MHD. Proceedings of the Fifth
		  international Pamir Conference.},
  Pages		= {101-105},
  Title		= {Numerical simulations of two-fluids MHD flows},
  Volume	= {1},
  Year		= {2002}
}

###Article{	  gerbeau-lelievre-le-bris-02b,
  Author	= {Gerbeau, J-F. and Leli{\`e}vre, T. and Le Bris, C.},
  Journal	= {Fundamental and Applied MHD. Proceedings of the Fifth
		  international Pamir Conference.},
  Pages		= {101-105},
  Title		= {Numerical simulations of two-fluids MHD flows},
  Volume	= {1},
  Year		= {2002}
}

@Article{	  gerbeau-lelievre-le-bris-03,
  Author	= {Gerbeau, J-F. and Leli{\`e}vre, T. and Le Bris, C.},
  Journal	= {Jour. Comp. Phys.},
  Number	= 1,
  Pages		= {163-191},
  Title		= {Simulations of {MHD} flows with moving interfaces},
  Volume	= 184,
  Year		= 2003
}

###Article{	  gerbeau-lelievre-le-bris-03,
  Author	= {Gerbeau, J-F. and Leli{\`e}vre, T. and Le Bris, C.},
  Journal	= {Jour. Comp. Phys.},
  Number	= 1,
  Pages		= {163-191},
  Title		= {Simulations of {MHD} flows with moving interfaces},
  Volume	= 184,
  Year		= 2003
}

@Article{	  gerbeau-perthame-01,
  Author	= {Gerbeau, J-F. and Perthame, B.},
  Journal	= {Discrete and Continuous Dynamical Systems: Series B},
  Number	= {1},
  Pages		= {89-102},
  Title		= {Derivation of viscous Saint-Venant system for laminar
		  shallow water; numerical validation},
  Volume	= {1},
  Year		= {2001}
}

###Article{	  gerbeau-perthame-01,
  Author	= {Gerbeau, J-F. and Perthame, B.},
  Journal	= {Discrete and Continuous Dynamical Systems: Series B},
  Number	= {1},
  Pages		= {89-102},
  Title		= {Derivation of viscous Saint-Venant system for laminar
		  shallow water; numerical validation},
  Volume	= {1},
  Year		= {2001}
}

@Article{	  gerbeau-vidrascu-03,
  Author	= {Gerbeau, J-F. and Vidrascu, M.},
  Journal	= {Math. Model. Num. Anal.},
  Number	= {4},
  Pages		= {631-648},
  Title		= {A quasi-{Newton} algorithm based on a reduced model for
		  fluid-structure interactions problems in blood flows},
  Volume	= {37},
  Year		= {2003}
}

###Article{	  gerbeau-vidrascu-03,
  Author	= {Gerbeau, J-F. and Vidrascu, M.},
  Journal	= {Math. Model. Num. Anal.},
  Number	= {4},
  Pages		= {631-648},
  Title		= {A quasi-{Newton} algorithm based on a reduced model for
		  fluid-structure interactions problems in blood flows},
  Volume	= {37},
  Year		= {2003}
}

@Article{	  gerbeau-vidrascu-frey-05,
  Author	= {Gerbeau, J-F. and Vidrascu, M. and Frey, P.},
  Journal	= {Comp. \& Struct.},
  Number	= {2-3},
  Pages		= {155-165},
  Title		= {Fluid-Structure Interaction in Blood Flows on Geometries
		  based on Medical Imaging},
  Volume	= {83},
  Year		= {2005}
}

###Article{	  gerbeau-vidrascu-frey-05,
  Author	= {Gerbeau, J-F. and Vidrascu, M. and Frey, P.},
  Journal	= {Comp. \& Struct.},
  Number	= {2-3},
  Pages		= {155-165},
  Title		= {Fluid-Structure Interaction in Blood Flows on Geometries
		  based on Medical Imaging},
  Volume	= {83},
  Year		= {2005}
}

@Article{	  gersh_2011_2011,
  Title		= {2011 {{ACCF}}/{{AHA}} Guideline for the Diagnosis and
		  Treatment of Hypertrophic Cardiomyopathy: A Report of the
		  {{American College}} of {{Cardiology
		  Foundation}}/{{American Heart Association Task Force}} on
		  Practice Guidelines Developed in Collaboration with the
		  {{American Association}} for {{Thoracic Surgery}},
		  {{American Society}} of Echocardiography, {{American
		  Society}} of Nuclear {{Cardiology}}, {{Heart Failure
		  Society}} of {{America}}, {{Heart Rhythm Society}},
		  {{Society}} for {{Cardiovascular Angiography}} and
		  {{Interventions}}, and {{Society}} of {{Thoracic
		  Surgeons}}},
  Volume	= {58},
  ShortTitle	= {2011 {{ACCF}}/{{AHA}} Guideline for the Diagnosis and
		  Treatment of Hypertrophic Cardiomyopathy},
  Number	= {25},
  JournalTitle	= {Journal of the American College of Cardiology},
  Year		= {2011},
  Pages		= {e212--e260},
  Author	= {Gersh, Bernard J. and Maron, Barry J. and Bonow, Robert O.
		  and Dearani, Joseph A. and Fifer, Michael A. and Link, Mark
		  S. and Naidu, Srihari S. and Nishimura, Rick A. and Ommen,
		  Steve R. and Rakowski, Harry}
}

@Article{	  geuzaine-remacle-09,
  Author	= {Geuzaine, C. and Remacle, J.-F.},
  Title		= {Gmsh: A 3-D finite element mesh generator with built-in
		  pre- and post-processing facilities},
  Journal	= {International Journal for Numerical Methods in
		  Engineering},
  Volume	= {79},
  Number	= {11},
  Publisher	= {John Wiley & Sons, Ltd.},
  ISSN		= {1097-0207},
  Pages		= {1309--1331},
  Keywords	= {computer-aided design, mesh generation, post-processing,
		  finite element method, open-source software},
  Year		= {2009}
}

###Article{	  geuzaine-remacle-09,
  Author	= {Geuzaine, Christophe and Remacle, Jean-Francois},
  Title		= {Gmsh: A 3-D finite element mesh generator with built-in
		  pre- and post-processing facilities},
  Journal	= {International Journal for Numerical Methods in
		  Engineering},
  Volume	= {79},
  Number	= {11},
  Publisher	= {John Wiley & Sons, Ltd.},
  ISSN		= {1097-0207},
  URL		= {http://dx.doi.org/10.1002/nme.2579},
  DOI		= {10.1002/nme.2579},
  Pages		= {1309--1331},
  Keywords	= {computer-aided design, mesh generation, post-processing,
		  finite element method, open-source software},
  Year		= {2009}
}

@PhdThesis{	  ghidaglia-84,
  Author	= {Ghidaglia, J.-M.},
  School	= {Universit{\'e} de Paris-Sud, Orsay},
  Title		= {Etude d'{\'e}coulements de fluides visqueux
		  incompressibles~: comportement pour les grands temps et
		  applications aux attracteurs},
  Type		= {Th{\`e}se},
  Year		= {1984}
}

###PhdThesis{	  ghidaglia-84,
  Author	= {Ghidaglia, J.-M.},
  School	= {Universit{\'e} de Paris-Sud, Orsay},
  Title		= {Etude d'{\'e}coulements de fluides visqueux
		  incompressibles~: comportement pour les grands temps et
		  applications aux attracteurs},
  Type		= {Th{\`e}se},
  Year		= {1984}
}

@Article{	  gifsen-van-de-vosse-janssen-99,
  Annote	= {hemodynamics, non newtonian},
  Author	= {Gijsen, F.J.H. and van de Vosse, F.N and Janssen J.D.},
  code		= {hemo},
  Journal	= {J. Biomech.},
  Pages		= {601-608},
  Title		= {The influence of the non-{Newtonian} properties of blood
		  on the flow in large arteries: steady flow in a carotid
		  bifurcation model},
  Volume	= {32},
  Year		= {1999}
}

###Article{	  gifsen-van-de-vosse-janssen-99,
  Annote	= {hemodynamics, non newtonian},
  Author	= {Gijsen, F.J.H. and van de Vosse, F.N and Janssen J.D.},
  code		= {hemo},
  Journal	= {J. Biomech.},
  Pages		= {601-608},
  Title		= {The influence of the non-{Newtonian} properties of blood
		  on the flow in large arteries: steady flow in a carotid
		  bifurcation model},
  Volume	= {32},
  Year		= {1999}
}

@Article{	  gijsen-allanic-van-de-vosse-janssen-99,
  Annote	= {hemodynamics, non newtonian},
  Author	= {Gijsen, F.J.H. and Allanic, E. and van de Vosse, F.N and
		  Janssen J.D.},
  code		= {hemo},
  Journal	= {J. Biomech.},
  Pages		= {705-713},
  Title		= {The influence of the non-{Newtonian} properties of blood
		  on the flow in large arteries: unsteady flow in $90^o$
		  curved tube},
  Volume	= {32},
  Year		= {1999}
}

###Article{	  gijsen-allanic-van-de-vosse-janssen-99,
  Annote	= {hemodynamics, non newtonian},
  Author	= {Gijsen, F.J.H. and Allanic, E. and van de Vosse, F.N and
		  Janssen J.D.},
  code		= {hemo},
  Journal	= {J. Biomech.},
  Pages		= {705-713},
  Title		= {The influence of the non-{Newtonian} properties of blood
		  on the flow in large arteries: unsteady flow in $90^o$
		  curved tube},
  Volume	= {32},
  Year		= {1999}
}

@Article{	  gijsen_influence_1999,
  langid	= {english},
  Title		= {The Influence of the Non-{{Newtonian}} Properties of Blood
		  on the Flow in Large Arteries: Steady Flow in a Carotid
		  Bifurcation Model},
  Volume	= {32},
  ISSN		= {00219290},
  URL		= {http://linkinghub.elsevier.com/retrieve/pii/S0021929099000159},
  DOI		= {10.1016/S0021-9290(99)00015-9},
  ShortTitle	= {The Influence of the Non-{{Newtonian}} Properties of Blood
		  on the Flow in Large Arteries},
  Number	= {6},
  JournalTitle	= {Journal of Biomechanics},
  URLDate	= {2019-02-13},
  Year		= {1999-06},
  Pages		= {601-608},
  Author	= {Gijsen, F.J.H. and van de Vosse, F.N. and Janssen, J.D.},
  Options	= {useprefix=true}
}

@InCollection{	  gil2013stacom,
  Title		= {What a difference in biomechanics cardiac fiber makes},
  Author	= {Gil, Debora and Borr{\`a}s, Agn{\'e}s and Aris, Ruth and
		  V{\'a}zquez, Mariano and Lafortune, Pierre and Houzeaux,
		  Guillaume and Aguado, Jazmin and Ballester, Manel and Li,
		  Chi Hion and Carreras, Francesc},
  BookTitle	= {Statistical Atlases and Computational Models of the Heart.
		  Imaging and Modelling Challenges},
  Pages		= {253--260},
  Year		= {2013},
  Publisher	= {Springer}
}

@Article{	  gilbert2007regional,
  Author	= {Gilbert, Stephen H and Benson, Alan P and Li, Pan and
		  Holden, Arun V},
  Title		= {Regional localisation of left ventricular sheet structure:
		  integration with current models of cardiac fibre, sheet and
		  band structure},
  Journal	= {European journal of cardio-thoracic surgery},
  Year		= {2007},
  Volume	= {32},
  Pages		= {231--249},
  Number	= {2},
  Publisher	= {Oxford University Press}
}

@Book{		  girault-raviart-86,
  Author	= {Girault, V. and Raviart, P.-A.},
  Publisher	= {Springer-Verlag},
  Title		= { Finite element methods for {Navier-Stokes} equations},
  Year		= {1986}
}

###Book{	  girault-raviart-86,
  Author	= {Girault, V. and Raviart, P.-A.},
  Publisher	= {Springer-Verlag},
  Title		= { Finite element methods for {Navier-Stokes} equations},
  Year		= {1986}
}

@Book{		  girault2012finite,
  Title		= {Finite element methods for {N}avier-{S}tokes equations:
		  theory and algorithms},
  Author	= {Girault, Vivette and Raviart, Pierre-Arnaud},
  Volume	= {5},
  Year		= {2012},
  Publisher	= {Springer Science \& Business Media}
}

###Book{	  girault2012finite,
  Title		= {Finite element methods for {N}avier-{S}tokes equations:
		  theory and algorithms},
  Author	= {Girault, Vivette and Raviart, Pierre-Arnaud},
  Volume	= {5},
  Year		= {2012},
  Publisher	= {Springer Science \& Business Media}
}

@Article{	  gjesdal2011nature,
  Title		= {Cardiac remodeling at the population level -- risk
		  factors, screening, and outcomes},
  Author	= {Gjesdal, Ola and Bluemke, David A and Lima, Joao A},
  Journal	= {Nature Reviews Cardiology},
  Year		= {2011},
  Number	= {12},
  Pages		= {673--685},
  Volume	= {8},
  File		= {:gjesdal11.pdf:PDF},
  Publisher	= {Nature Publishing Group},
  timestamp	= {2014/09/17}
}

@Article{	  glower1985circ,
  Title		= {Linearity of the Frank-Starling relationship in the intact
		  heart: the concept of preload recruitable stroke work.},
  Author	= {Glower, D D and Spratt, J A and Snow, N D and Kabas, J S
		  and Davis, J W and Olsen, C O and Tyson, G S and Sabiston,
		  D C and Rankin, J S},
  Journal	= {Circulation},
  Year		= {1985},
  Number	= {5},
  Pages		= {994-1009},
  Volume	= {71},
  Abstract	= {The Frank-Starling relationship generally has been
		  examined with filling pressure as the index of preload,
		  resulting in a curvilinear function that plateaus at higher
		  filling pressures. To investigate this relationship further
		  in the intact heart, 32 dogs were chronically instrumented
		  with left ventricular and pleural micromanometers and with
		  regional (10 dogs) or global (22 dogs) ultrasonic dimension
		  transducers. Seven days after implantation, left
		  ventricular pressure and regional or global dimensions were
		  recorded in the conscious state. After autonomic blockade,
		  preload was varied by vena caval occlusion. Myocardial
		  function was assessed by calculating regional or global
		  stroke work, and preload was measured as end-diastolic
		  segment length or chamber volume. The relationship between
		  stroke work and either end-diastolic segment length or
		  chamber volume (termed the preload recruitable stroke work
		  relationship) was highly linear in every study (mean r =
		  .97) and could be quantified by a slope (MW) and
		  x-intercept (LW). Previous nonlinear relationships between
		  stroke work and filling pressure seemed to reflect the
		  exponential diastolic pressure-volume curve. Over the
		  physiologic range of systolic arterial pressures produced
		  by infusion of nitroprusside or phenylephrine, no
		  significant change was observed in MW or LW in the normal
		  dog. Calcium infusion increased both regional and global MW
		  by 71 +/- 19% and 65 +/- 9%, respectively (p less than
		  .02), with no significant change in LW. To normalize for
		  ventricular geometry and heart rate, stroke work was
		  computed from circumferential stress-strain data and
		  converted to myocardial power output, which was then
		  plotted against end-diastolic circumferential strain. This
		  relationship also was highly linear, and the slope, Mmp
		  (mW/cm3 of myocardium), is proposed as a potential measure
		  of intrinsic myocardial performance independent of loading,
		  geometry, and heart rate.},
  DOI		= {10.1161/01.CIR.71.5.994},
  EPrint	= {http://circ.ahajournals.org/content/71/5/994.full.pdf+html},
  File		= {glower85.pdf:glower85.pdf:PDF},
  timestamp	= {2015/09/15},
  URL		= {http://circ.ahajournals.org/content/71/5/994.abstract}
}

@InCollection{	  glowinski-le-tallec-ravachol-tsikkinis-92,
  Address	= {Washington, DC},
  Author	= {Glowinski, R. and Le Tallec, P. and Ravachol, M. and
		  Tsikkinis, V.},
  BookTitle	= {Finite elements in fluids, Vol.\ 8 (Huntsville, AL, 1989)},
  mrnumber	= {94b:65146},
  mrreviewer	= {Rolf Rannacher},
  Pages		= {137--163},
  Publisher	= {Hemisphere},
  Title		= {Numerical solution of the {N}avier-{S}tokes equations
		  modeling the flow of two incompressible nonmiscible viscous
		  fluids},
  Year		= {1992}
}

###InCollection{  glowinski-le-tallec-ravachol-tsikkinis-92,
  Address	= {Washington, DC},
  Author	= {Glowinski, R. and Le Tallec, P. and Ravachol, M. and
		  Tsikkinis, V.},
  BookTitle	= {Finite elements in fluids, Vol.\ 8 (Huntsville, AL, 1989)},
  mrnumber	= {94b:65146},
  mrreviewer	= {Rolf Rannacher},
  Pages		= {137--163},
  Publisher	= {Hemisphere},
  Title		= {Numerical solution of the {N}avier-{S}tokes equations
		  modeling the flow of two incompressible nonmiscible viscous
		  fluids},
  Year		= {1992}
}

@Article{	  glowinski-pan-hesla-joseph-99,
  Author	= {Glowinski, R. and Pan, T.W. and Hesla, T.I. and Joseph,
		  D.D.},
  Journal	= {Int. J. of Multiphase Flow},
  Pages		= {755-794},
  Title		= {A distributed {Lagrange} mutiplier/fictitious domain
		  method for particulate flows},
  Volume	= {25},
  Year		= {1999}
}

###Article{	  glowinski-pan-hesla-joseph-99,
  Author	= {Glowinski, R. and Pan, T.W. and Hesla, T.I. and Joseph,
		  D.D.},
  Journal	= {Int. J. of Multiphase Flow},
  Pages		= {755-794},
  Title		= {A distributed {Lagrange} mutiplier/fictitious domain
		  method for particulate flows},
  Volume	= {25},
  Year		= {1999}
}

@Article{	  glowinski-pan-periaux-94,
  Author	= {Glowinski, R. and Pan, T.W. and P{\'e}riaux, J.},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Number	= {3-4},
  Pages		= {283--303},
  Title		= {A fictitious domain method for {D}irichlet problem and
		  applications},
  Volume	= {111},
  Year		= {1994}
}

###Article{	  glowinski-pan-periaux-94,
  Author	= {Glowinski, R. and Pan, T.W. and P{\'e}riaux, J.},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Number	= {3-4},
  Pages		= {283--303},
  Title		= {A fictitious domain method for {D}irichlet problem and
		  applications},
  Volume	= {111},
  Year		= {1994}
}

@Article{	  glowinski-pironneau-79,
  Author	= {Glowinski, R. and Pironneau, O.},
  Journal	= {Numer. Math.},
  Pages		= {397-424},
  Title		= {On a mixed finite element approximation of the {Stokes}
		  problem},
  Volume	= {33},
  Year		= {1979}
}

###Article{	  glowinski-pironneau-79,
  Author	= {Glowinski, R. and Pironneau, O.},
  Journal	= {Numer. Math.},
  Pages		= {397-424},
  Title		= {On a mixed finite element approximation of the {Stokes}
		  problem},
  Volume	= {33},
  Year		= {1979}
}

@Article{	  glowinski-pironneau-79b,
  Author	= {Glowinski, R. and Pironneau, O.},
  Journal	= {SIAM},
  Month		= {April},
  Number	= {2},
  Pages		= {167-212},
  Title		= {Numerical methods for the first biharmonic equation and
		  for the two-dimensional {Stokes} problem},
  Volume	= {21},
  Year		= {1979}
}

###Article{	  glowinski-pironneau-79b,
  Author	= {Glowinski, R. and Pironneau, O.},
  Journal	= {SIAM},
  Month		= {April},
  Number	= {2},
  Pages		= {167-212},
  Title		= {Numerical methods for the first biharmonic equation and
		  for the two-dimensional {Stokes} problem},
  Volume	= {21},
  Year		= {1979}
}

@Article{	  glowinski-pironneau-92,
  Author	= {Glowinski, R. and Pironneau, O.},
  Journal	= {Annu. Rev. Fluid Mech.},
  Pages		= {167-204},
  Title		= {Finite element methods for {Navier-Stokes} equations},
  Volume	= {24},
  Year		= {1992}
}

###Article{	  glowinski-pironneau-92,
  Author	= {Glowinski, R. and Pironneau, O.},
  Journal	= {Annu. Rev. Fluid Mech.},
  Pages		= {167-204},
  Title		= {Finite element methods for {Navier-Stokes} equations},
  Volume	= {24},
  Year		= {1992}
}

@Article{	  goda-79,
  Title		= {{A multistep technique with implicit difference schemes
		  for calculating two- or three-dimensional cavity flows}},
  Author	= {Goda, K.},
  Journal	= jcp,
  Volume	= {30},
  Pages		= {76--95},
  Year		= {1979}
}

###Article{	  goda-79,
  Title		= {{A multistep technique with implicit difference schemes
		  for calculating two- or three-dimensional cavity flows}},
  Author	= {Goda, K.},
  Journal	= jcp,
  Volume	= {30},
  Pages		= {76--95},
  Year		= {1979}
}

@Book{		  godlewski-raviart-91,
  Author	= {Godlewski, E. and Raviart, P.-A.},
  Publisher	= {Ellipses},
  Title		= {Hyperbolic systems of conservation laws},
  Year		= {1991}
}

###Book{	  godlewski-raviart-91,
  Author	= {Godlewski, E. and Raviart, P.-A.},
  Publisher	= {Ellipses},
  Title		= {Hyperbolic systems of conservation laws},
  Year		= {1991}
}

@Article{	  goektepe2010,
  Year		= {2010},
  ISSN		= {0178-7675},
  Journal	= {Computational Mechanics},
  Volume	= {45},
  Issue		= {2-3},
  DOI		= {10.1007/s00466-009-0434-z},
  Title		= {Electromechanics of the heart: a unified approach to the
		  strongly coupled excitationâcontraction problem},
  Publisher	= {Springer-Verlag},
  Keywords	= {Coupled problems; Cardiac electromechanics;
		  Excitationâcontraction; Finite elements},
  Author	= {Goektepe, S. and Kuhl, E.},
  Pages		= {227-243},
  Language	= {English}
}

@Article{	  goktepe2010jmps,
  Title		= {A generic approach towards finite growth with examples of
		  athlete's heart, cardiac dilation, and cardiac wall
		  thickening},
  Author	= {Serdar GÃ¶ktepe and Oscar John Abilez and Ellen Kuhl},
  Journal	= {Journal of the Mechanics and Physics of Solids },
  Year		= {2010},
  Number	= {10},
  Pages		= {1661 - 1680},
  Volume	= {58},
  Abstract	= {The objective of this work is to establish a generic
		  continuum-based computational concept for finite growth of
		  living biological tissues. The underlying idea is the
		  introduction of an incompatible growth configuration which
		  naturally introduces a multiplicative decomposition of the
		  deformation gradient into an elastic and a growth part. The
		  two major challenges of finite growth are the kinematic
		  characterization of the growth tensor and the
		  identification of mechanical driving forces for its
		  evolution. Motivated by morphological changes in cell
		  geometry, we illustrate a micromechanically motivated
		  ansatz for the growth tensor for cardiac tissue that can
		  capture both strain-driven ventricular dilation and
		  stress-driven wall thickening. Guided by clinical
		  observations, we explore three distinct pathophysiological
		  cases: athlete's heart, cardiac dilation, and cardiac wall
		  thickening. We demonstrate the computational solution of
		  finite growth within a fully implicit incremental iterative
		  Newton? Raphson based finite element solution scheme. The
		  features of the proposed approach are illustrated and
		  compared for the three different growth pathologies in
		  terms of a generic bi-ventricular heart model. },
  DOI		= {http://dx.doi.org/10.1016/j.jmps.2010.07.003},
  File		= {goktepe10.pdf:goktepe10.pdf:PDF},
  ISSN		= {0022-5096},
  Keywords	= {Biological growth},
  timestamp	= {2015/09/22},
  URL		= {http://www.sciencedirect.com/science/article/pii/S0022509610001328}
}

@Article{	  goktepe2010jtb,
  Title		= {A multiscale model for eccentric and concentric cardiac
		  growth through sarcomerogenesis},
  Author	= {G{\"o}ktepe, S. and Abilez, O. J. and Parker, K. K. and
		  Kuhl, E.},
  Journal	= {Journal of Theoretical biology},
  Year		= {2010},
  Number	= {3},
  Pages		= {433--442},
  Volume	= {265},
  File		= {:goktepe10.pdf:PDF},
  Publisher	= {Elsevier},
  timestamp	= {2014/11/25}
}

@Article{	  gorlin-1951,
  Author	= {Gorlin, R. and Gorlin, S.C.},
  Journal	= {Am. Heart J.},
  Pages		= {1-29},
  Title		= {Hydraulic formula for calculation of the area of the
		  stenotic mitral valve, other cardiac valves, and central
		  circulatory shunts.},
  Volume	= {41},
  Year		= {1951}
}

###Article{	  gorlin-1951,
  Author	= {Gorlin, R. and Gorlin, S.C.},
  Journal	= {Am. Heart J.},
  Pages		= {1-29},
  Title		= {Hydraulic formula for calculation of the area of the
		  stenotic mitral valve, other cardiac valves, and central
		  circulatory shunts.},
  Volume	= {41},
  Year		= {1951}
}

@Article{	  goubergrits2015mri,
  Title		= {Is MRI-based CFD able to improve clinical treatment of
		  coarctations of aorta?},
  Author	= {Goubergrits, L and Riesenkampff, E and Yevtushenko, P and
		  Schaller, J and Kertzscher, U and Berger, F and Kuehne, T},
  Journal	= {Annals of biomedical engineering},
  Volume	= {43},
  Number	= {1},
  Pages		= {168--176},
  Year		= {2015},
  Publisher	= {Springer}
}

###Article{	  goubergrits2015mri,
  Title		= {Is MRI-based CFD able to improve clinical treatment of
		  coarctations of aorta?},
  Author	= {Goubergrits, L and Riesenkampff, E and Yevtushenko, P and
		  Schaller, J and Kertzscher, U and Berger, F and Kuehne, T},
  Journal	= {Annals of biomedical engineering},
  Volume	= {43},
  Number	= {1},
  Pages		= {168--176},
  Year		= {2015},
  Publisher	= {Springer}
}

@Article{	  goubergrits_impact_2013,
  langid	= {english},
  Title		= {The {{Impact}} of {{MRI}}-Based {{Inflow}} for the
		  {{Hemodynamic Evaluation}} of {{Aortic Coarctation}}},
  Volume	= {41},
  ISSN		= {1573-9686},
  URL		= {https://doi.org/10.1007/s10439-013-0879-2},
  DOI		= {10.1007/s10439-013-0879-2},
  Abstract	= {Aortic coarctation (CoA) accounting for 3â11\% of
		  congenital heart disease can be successfully treated.
		  Long-term results, however, have revealed decreased life
		  expectancy associated with abnormal hemodynamics.
		  Accordingly, an assessment of hemodynamics is the key
		  factor in treatment decisions and successful long-term
		  results. In this study, 3D angiography whole heart (3DWH)
		  and 4D phase-contrast magnetic resonance imaging (MRI) data
		  were acquired. Geometries of the thoracic aorta with CoAs
		  were reconstructed using ZIB-Amira software. X-ray
		  angiograms were used to evaluate the post-treatment
		  geometry. Computational fluid dynamics models in three
		  patients were created to simulate pre- and post-treatment
		  situations using the FLUENT program. The aim of the study
		  was to investigate the impact of the inlet velocity profile
		  (plug vs. MRI-based) with a focus on the peak systole
		  pressure gradient and wall shear stress (WSS). Results show
		  that helical flow at the aorta inlet can significantly
		  affect the assessment of pressure drop and WSS. Simplified
		  plug inlet velocity profiles significantly (p {$<$} 0.05)
		  overestimate the pressure drop in pre- and post-treatment
		  geometries and significantly (p {$<$} 0.05) underestimate
		  surface-averaged WSS. We conclude that the use of the
		  physiologically correct but time-expensive 4D MRI-based in
		  vivo velocity profile in CFD studies may be an important
		  step towards a patient-specific analysis of CoA
		  hemodynamics.},
  Number	= {12},
  JournalTitle	= {Annals of Biomedical Engineering},
  ShortJournal	= {Ann Biomed Eng},
  URLDate	= {2019-02-20},
  Year		= {2013-12-01},
  Pages		= {2575-2587},
  Author	= {Goubergrits, Leonid and Mevert, R. and Yevtushenko, P. and
		  Schaller, J. and Kertzscher, U. and Meier, S. and Schubert,
		  S. and Riesenkampff, E. and Kuehne, T.}
}

@Article{	  goubergrits_patient-specific_2019,
  langid	= {english},
  Title		= {Patient-Specific Requirements and Clinical Validation of
		  {{MRI}}-Based Pressure Mapping: {{A}} Two-Center Study in
		  Patients with Aortic Coarctation},
  Volume	= {49},
  ISSN		= {1522-2586},
  URL		= {https://onlinelibrary.wiley.com/doi/abs/10.1002/jmri.26230},
  DOI		= {10.1002/jmri.26230},
  ShortTitle	= {Patient-Specific Requirements and Clinical Validation of
		  {{MRI}}-Based Pressure Mapping},
  Abstract	= {Background Invasive peak-to-peak pressure gradients are
		  the current clinical reference standard for assessing
		  aortic coarctation. To obtain them, patients need to
		  undergo arterial heart catheterization. Unless an
		  intervention is performed, the procedure remains purely
		  diagnostic, while the concomitant risks remain. Purpose To
		  validate MRI-based pressure mapping against pressure drop
		  derived from heart catheterization and to define minimal
		  clinical requirements. Study Type Prospective clinical
		  validation study. Population Twenty-seven coarctation
		  patients with an indicated heart catheterization were
		  enrolled at two clinical centers. MRI Sequences 1.5T
		  including 4D velocity-encoded MRI and 3D anatomical imaging
		  of the aorta. Assessment Pressure drop across the stenosis
		  was calculated by pressure mapping based on the pressure
		  Poisson equation. Calculated pressure drops were compared
		  with catheter measured data. Spatial and temporal
		  resolution were analyzed using in silico phantom-based data
		  as well as in vivo measurements. Statistics Pressure drop
		  was compared to peak-to-peak measurements. A two-sample
		  paired mean equivalence test was used. Results In patients
		  without imaging artifacts and a required spatial resolution
		  â¥5 voxel/diameter, significant equivalence of pressure
		  mapping compared to heart catheterization was found (17.5
		  Â± 6.49 vs. 16.6 Â± 6.53 mmHg, P {$<$} 0.001). Data
		  Conclusion Pressure mapping provides equivalent accuracy to
		  pressure drop obtained from heart catheterization in
		  patients 1) without previous stenting and 2) with
		  sufficient spatial image resolution (at least 5
		  voxels/diameter). In these patients the method can reliably
		  be performed prior to the actual procedure, and thus allows
		  safe noninvasive treatment planning based on MRI. Level of
		  Evidence: 2 Technical Efficacy: Stage 3 J. Magn. Reson.
		  Imaging 2019;49:81â89.},
  Number	= {1},
  JournalTitle	= {Journal of Magnetic Resonance Imaging},
  URLDate	= {2019-01-29},
  Year		= {2019},
  Pages		= {81-89},
  Author	= {Goubergrits, Leonid and Hellmeier, Florian and Neumann,
		  Dominik and Mihalef, Viorel and Gulsun, Mehmet A. and
		  Chinali, Marcello and Secinaro, Aurelio and Runte, Kilian
		  and Schubert, Stephan and Berger, Felix and Kuehne, Titus
		  and Hennemuth, Anja and Kelm, Marcus}
}

@Book{		  graf-altinakar-99,
  Author	= {Graf, H. and Altinakar, M.S.},
  Publisher	= {Presses polytechniques et universitaires romandes},
  Series	= {Trait{\'e} de g{\'e}nie civil de l'{\'e}cole polytechnique
		  f{\'e}d{\'e}rale de Lausanne},
  Title		= {Hydraulique fluviale : {\'e}coulement permanent uniforme
		  et non uniforme},
  Year		= {1999}
}

###Book{	  graf-altinakar-99,
  Author	= {Graf, H. and Altinakar, M.S.},
  Publisher	= {Presses polytechniques et universitaires romandes},
  Series	= {Trait{\'e} de g{\'e}nie civil de l'{\'e}cole polytechnique
		  f{\'e}d{\'e}rale de Lausanne},
  Title		= {Hydraulique fluviale : {\'e}coulement permanent uniforme
		  et non uniforme},
  Year		= {1999}
}

@Unpublished{	  grandmont-desjardin-esteban,
  Author	= {Grandmont, C. and Desjardin, B. and Esteban, M.},
  Title		= {in preparation}
}

###Unpublished{	  grandmont-desjardin-esteban,
  Author	= {Grandmont, C. and Desjardin, B. and Esteban, M.},
  Title		= {in preparation}
}

@Article{	  grandmont-guimet-maday-01,
  Author	= {Grandmont, C. and Guimet, V. and Maday, Y.},
  fjournal	= {Mathematical Models \& Methods in Applied Sciences},
  ISSN		= {0218-2025},
  Journal	= {Math. Models Methods Appl. Sci.},
  mrclass	= {65M60 (65M12 74F10 74H99 76M25)},
  mrnumber	= {MR1859827 (2002h:65152)},
  Number	= {8},
  Pages		= {1349--1377},
  Title		= {Numerical analysis of some decoupling techniques for the
		  approximation of the unsteady fluid structure interaction},
  Volume	= {11},
  Year		= {2001}
}

###Article{	  grandmont-guimet-maday-01,
  Author	= {Grandmont, C. and Guimet, V. and Maday, Y.},
  fjournal	= {Mathematical Models \& Methods in Applied Sciences},
  ISSN		= {0218-2025},
  Journal	= {Math. Models Methods Appl. Sci.},
  mrclass	= {65M60 (65M12 74F10 74H99 76M25)},
  mrnumber	= {MR1859827 (2002h:65152)},
  Number	= {8},
  Pages		= {1349--1377},
  Title		= {Numerical analysis of some decoupling techniques for the
		  approximation of the unsteady fluid structure interaction},
  Volume	= {11},
  Year		= {2001}
}

@InCollection{	  grandmont-maday-98,
  Address	= {Providence, RI},
  Author	= {Grandmont, C. and Maday, Y.},
  BookTitle	= {Domain decomposition methods, 10 (Boulder, CO, 1997)},
  Pages		= {262--270},
  Publisher	= {Amer. Math. Soc.},
  Series	= {Contemp. Math.},
  Title		= {Nonconforming grids for the simulation of fluid-structure
		  interaction},
  Volume	= {218},
  Year		= {1998}
}

###InCollection{  grandmont-maday-98,
  Address	= {Providence, RI},
  Author	= {Grandmont, C. and Maday, Y.},
  BookTitle	= {Domain decomposition methods, 10 (Boulder, CO, 1997)},
  Pages		= {262--270},
  Publisher	= {Amer. Math. Soc.},
  Series	= {Contemp. Math.},
  Title		= {Nonconforming grids for the simulation of fluid-structure
		  interaction},
  Volume	= {218},
  Year		= {1998}
}

@Article{	  grant1965notes,
  Author	= {Grant, Robert P.},
  Title		= {Notes on the muscular architecture of the left ventricle},
  Journal	= {Circulation},
  Year		= {1965},
  Volume	= {32},
  Pages		= {301--308},
  Number	= {2},
  Publisher	= {Am Heart Assoc}
}

@Article{	  greenbaum1981,
  Author	= {Greenbaum, R. A. and Ho, S. Y. and Gibson, D. G. and
		  Becker, A. E. and Anderson, R. H.},
  Title		= {Left ventricular fibre architecture in man},
  Volume	= {45},
  Number	= {3},
  Pages		= {248-263},
  Year		= {1981},
  Journal	= {British Heart Journal}
}

@Article{	  greenwood2012l,
  Title		= {Cardiovascular magnetic resonance and single-photon
		  emission computed tomography for diagnosis of coronary
		  heart disease (CE-MARC): a prospective trial.},
  Author	= {Greenwood, John P. and Maredia, Neil and Younger, John F.
		  and Brown, Julia M. and Nixon, Jane and Everett, Colin C.
		  and Bijsterveld, Petra and Ridgway, John P. and Radjenovic,
		  Aleksandra and Dickinson, Catherine J. and Ball, Stephen G.
		  and Plein, Sven},
  Journal	= {Lancet},
  Year		= {2012},
  Month		= {Feb},
  Number	= {9814},
  Pages		= {453--460},
  Volume	= {379},
  Abstract	= {In patients with suspected coronary heart disease,
		  single-photon emission computed tomography (SPECT) is the
		  most widely used test for the assessment of myocardial
		  ischaemia, but its diagnostic accuracy is reported to be
		  variable and it exposes patients to ionising radiation. The
		  aim of this study was to establish the diagnostic accuracy
		  of a multiparametric cardiovascular magnetic resonance
		  (CMR) protocol with x-ray coronary angiography as the
		  reference standard, and to compare CMR with SPECT, in
		  patients with suspected coronary heart disease.In this
		  prospective trial patients with suspected angina pectoris
		  and at least one cardiovascular risk factor were scheduled
		  for CMR, SPECT, and invasive x-ray coronary angiography.
		  CMR consisted of rest and adenosine stress perfusion, cine
		  imaging, late gadolinium enhancement, and MR coronary
		  angiography. Gated adenosine stress and rest SPECT used
		  (99m)Tc tetrofosmin. The primary outcome was diagnostic
		  accuracy of CMR. This trial is registered at
		  controlled-trials.com, number ISRCTN77246133.In the 752
		  recruited patients, 39\% had significant CHD as identified
		  by x-ray angiography. For multiparametric CMR the
		  sensitivity was 86Â·5\% (95\% CI 81Â·8-90Â·1), specificity
		  83Â·4\% (79Â·5-86Â·7), positive predictive value 77Â·2\%,
		  (72Â·1-81Â·6) and negative predictive value 90Â·5\%
		  (87Â·1-93Â·0). The sensitivity of SPECT was 66Â·5\% (95\%
		  CI 60Â·4-72Â·1), specificity 82Â·6\% (78Â·5-86Â·1),
		  positive predictive value 71Â·4\% (65Â·3-76Â·9), and
		  negative predictive value 79Â·1\% (74Â·8-82Â·8). The
		  sensitivity and negative predictive value of CMR and SPECT
		  differed significantly (p<0Â·0001 for both) but specificity
		  and positive predictive value did not (p=0Â·916 and
		  p=0Â·061, respectively).CE-MARC is the largest,
		  prospective, real world evaluation of CMR and has
		  established CMR's high diagnostic accuracy in coronary
		  heart disease and CMR's superiority over SPECT. It should
		  be adopted more widely than at present for the
		  investigation of coronary heart disease.British Heart Foundation.},
  DOI		= {10.1016/S0140-6736(11)61335-4},
  Institution	= {Multidisciplinary Cardiovascular Research Centre and Leeds
		  Institute of Genetics, Health and Therapeutics, University
		  of Leeds, Leeds, UK. j.greenwood@leeds.ac.uk},
  Keywords	= {Adenosine, diagnostic use; Contrast Media; Coronary
		  Angiography; Coronary Disease, diagnosis/radionuclide
		  imaging; Gadolinium DTPA, diagnostic use; Humans; Magnetic
		  Resonance Angiography; Myocardial Perfusion Imaging;
		  Predictive Value of Tests; Sensitivity and Specificity;
		  Tomography, Emission-Computed, Single-Photon},
  Language	= {eng},
  medline-pst	= {ppublish},
  owner		= {stoeckc},
  pii		= {S0140-6736(11)61335-4},
  pmid		= {22196944},
  timestamp	= {2015.07.24},
  URL		= {http://dx.doi.org/10.1016/S0140-6736(11)61335-4}
}

@Article{	  grenier-99,
  Author	= {Grenier, E.},
  Journal	= {ESIAM: Math. Model. Numer. Anal.},
  Number	= {5},
  Pages		= {965--970},
  Title		= {On the derivation of homogeneous hydrostatic equations},
  Volume	= {33},
  Year		= {1999}
}

###Article{	  grenier-99,
  Author	= {Grenier, E.},
  Journal	= {ESIAM: Math. Model. Numer. Anal.},
  Number	= {5},
  Pages		= {965--970},
  Title		= {On the derivation of homogeneous hydrostatic equations},
  Volume	= {33},
  Year		= {1999}
}

@Article{	  grinberg_outflow_2008,
  Title		= {Outflow Boundary Conditions for Arterial Networks with
		  Multiple Outlets},
  Volume	= {36},
  Number	= {9},
  JournalTitle	= {Annals of biomedical engineering},
  Year		= {2008},
  Pages		= {1496--1514},
  Author	= {Grinberg, Leopold and Karniadakis, George Em}
}

@Book{		  grjotheim-kvande-93,
  Author	= {Grjotheim, K. and Kvande, H.},
  Publisher	= {Aluminium-Verlag},
  Title		= {Introduction to Aluminium electrolysis},
  Year		= {1993}
}

###Book{	  grjotheim-kvande-93,
  Author	= {Grjotheim, K. and Kvande, H.},
  Publisher	= {Aluminium-Verlag},
  Title		= {Introduction to Aluminium electrolysis},
  Year		= {1993}
}

@Article{	  grobbelaar-08,
  Author	= {Grobbelaar-Van Dalsen, M.},
  date-added	= {2012-02-27 13:51:21 +0000},
  date-modified	= {2012-02-27 13:52:42 +0000},
  DOI		= {10.1007/s00021-006-0236-4},
  Journal	= {J. Math. Fluid Mech.},
  Number	= {3},
  Pages		= {388--401},
  Title		= {On a fluid-structure model in which the dynamics of the
		  structure involves the shear stress due to the fluid},
  Volume	= {10},
  Year		= {2008}
}

###Article{	  grobbelaar-08,
  Author	= {Grobbelaar-Van Dalsen, M.},
  date-added	= {2012-02-27 13:51:21 +0000},
  date-modified	= {2012-02-27 13:52:42 +0000},
  DOI		= {10.1007/s00021-006-0236-4},
  Journal	= {J. Math. Fluid Mech.},
  Number	= {3},
  Pages		= {388--401},
  Title		= {On a fluid-structure model in which the dynamics of the
		  structure involves the shear stress due to the fluid},
  Volume	= {10},
  Year		= {2008},
  bdsk-url-1	= {http://dx.doi.org/10.1007/s00021-006-0236-4}
}

@Article{	  grobbelaar-09,
  Author	= {Grobbelaar-Van Dalsen, M.},
  date-added	= {2012-02-27 13:52:50 +0000},
  date-modified	= {2012-02-27 13:53:16 +0000},
  DOI		= {10.1080/00036810903114841},
  Journal	= {Appl. Anal.},
  Number	= {7},
  Pages		= {1053--1065},
  Title		= {A new approach to the stabilization of a fluid-structure
		  interaction model},
  Volume	= {88},
  Year		= {2009}
}

###Article{	  grobbelaar-09,
  Author	= {Grobbelaar-Van Dalsen, M.},
  date-added	= {2012-02-27 13:52:50 +0000},
  date-modified	= {2012-02-27 13:53:16 +0000},
  DOI		= {10.1080/00036810903114841},
  Journal	= {Appl. Anal.},
  Number	= {7},
  Pages		= {1053--1065},
  Title		= {A new approach to the stabilization of a fluid-structure
		  interaction model},
  Volume	= {88},
  Year		= {2009},
  bdsk-url-1	= {http://dx.doi.org/10.1080/00036810903114841}
}

@Article{	  gudbjartsson1995rician,
  Author	= {Gudbjartsson, H{\'a}kon and Patz, Samuel},
  Title		= {{The Rician distribution of noisy MRI data}},
  Journal	= {{Magnetic Resonance in Medicine}},
  Year		= {1995},
  Volume	= {34},
  Pages		= {910--914},
  Number	= {6},
  Publisher	= {Wiley Online Library}
}

@Article{	  guermond-96,
  Author	= {Guermond, J.-L.},
  Journal	= {M2AN},
  Pages		= {637-667},
  Title		= {Some implementation of projection methods for
		  {N}avier-{S}tokes equations},
  Volume	= 30,
  Year		= 1996
}

###Article{	  guermond-96,
  Author	= {Guermond, J.-L.},
  Journal	= {M2AN},
  Pages		= {637-667},
  Title		= {Some implementation of projection methods for
		  {N}avier-{S}tokes equations},
  Volume	= 30,
  Year		= 1996
}

@Unpublished{	  guermond-minev,
  Author	= {Guermond, J.L. and Minev, P.D.},
  code		= {mhd45},
  Note		= {to appear in Num. Meth. PDE},
  Title		= {Mixed finite element approximation of an {MHD} problem
		  involving conducting and insulating regions: the {3D}
		  case}
}

###Unpublished{	  guermond-minev,
  Author	= {Guermond, J.L. and Minev, P.D.},
  code		= {mhd45},
  Note		= {to appear in Num. Meth. PDE},
  Title		= {Mixed finite element approximation of an {MHD} problem
		  involving conducting and insulating regions: the {3D}
		  case}
}

@Article{	  guermond-minev-shen-06,
  Author	= {Guermond, J.-L. and Minev, P. and Shen, J.},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Pages		= {6011-6045},
  Title		= {An Overview of Projection methods for incompressible
		  flows},
  Volume	= 195,
  Year		= 2006
}

###Article{	  guermond-minev-shen-06,
  Author	= {Guermond, J.-L. and Minev, P. and Shen, J.},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Pages		= {6011-6045},
  Title		= {An Overview of Projection methods for incompressible
		  flows},
  Volume	= 195,
  Year		= 2006
}

@Unpublished{	  guermond-minev-shen-xx,
  Author	= {Guermond, J.-L. and Minev, P. and Shen, J.},
  Note		= {Submitted to {\em Comp. Meth. Appl. Mech. Engng.}, 2004.},
  Title		= {An Overview of Projection methods for incompressible
		  flows}
}

###Unpublished{	  guermond-minev-shen-xx,
  Author	= {Guermond, J.-L. and Minev, P. and Shen, J.},
  Note		= {Submitted to {\em Comp. Meth. Appl. Mech. Engng.}, 2004.},
  Title		= {An Overview of Projection methods for incompressible
		  flows}
}

@Article{	  guermond-quartapelle-98,
  Author	= {Guermond, J.-L. and Quartapelle, L.},
  fjournal	= {International Journal for Numerical Methods in Fluids},
  Journal	= {Internat. J. Numer. Methods Fluids},
  Number	= {9},
  Pages		= {1039--1053},
  Title		= {On stability and convergence of projection methods based
		  on pressure {P}oisson equation},
  Volume	= {26},
  Year		= {1998}
}

###Article{	  guermond-quartapelle-98,
  Author	= {Guermond, J.-L. and Quartapelle, L.},
  fjournal	= {International Journal for Numerical Methods in Fluids},
  Journal	= {Internat. J. Numer. Methods Fluids},
  Number	= {9},
  Pages		= {1039--1053},
  Title		= {On stability and convergence of projection methods based
		  on pressure {P}oisson equation},
  Volume	= {26},
  Year		= {1998}
}

@Article{	  guermond03_projmetherror,
  Author	= "Guermond, J.~L. and Shien, J.",
  Title		= "{On the error estimates for the rotational
		  pressure-correction projection methods}",
  Journal	= mc,
  Volume	= "73",
  Number	= "248",
  Pages		= "1719--1737",
  Year		= "2003"
}

###Article{	  guermond03_projmetherror,
  Author	= "Guermond, J.~L. and Shien, J.",
  Title		= "{On the error estimates for the rotational
		  pressure-correction projection methods}",
  Journal	= mc,
  Volume	= "73",
  Number	= "248",
  Pages		= "1719--1737",
  Year		= "2003"
}

@Article{	  guermond06_overview,
  Author	= "Guermond, J.~L and Minev, P. and Shen, J.",
  Title		= "An overview of projection methods for incompressible
		  flows",
  Journal	= cma,
  Volume	= "195",
  Number	= "44--47",
  Pages		= "6011--6045",
  Year		= "2006"
}

###Article{	  guermond06_overview,
  Author	= "Guermond, J.~L and Minev, P. and Shen, J.",
  Title		= "An overview of projection methods for incompressible
		  flows",
  Journal	= cma,
  Volume	= "195",
  Number	= "44--47",
  Pages		= "6011--6045",
  Year		= "2006"
}

@Article{	  guermond06_projmeththeory,
  Author	= "Guermond, J.~L. and Quartapelle, L.",
  Title		= "{On stability and convergence of projection methods based
		  on pressure Poisson equation}",
  Journal	= ijnmf,
  Volume	= "26",
  Pages		= "1039--1053",
  Year		= "2006"
}

###Article{	  guermond06_projmeththeory,
  Author	= "Guermond, J.~L. and Quartapelle, L.",
  Title		= "{On stability and convergence of projection methods based
		  on pressure Poisson equation}",
  Journal	= ijnmf,
  Volume	= "26",
  Pages		= "1039--1053",
  Year		= "2006"
}

@Article{	  guermond2006overview,
  Title		= {An overview of projection methods for incompressible
		  flows},
  Author	= {Guermond, JL and Minev, Peter and Shen, Jie},
  Journal	= {Computer methods in applied mechanics and engineering},
  Volume	= {195},
  Number	= {44},
  Pages		= {6011--6045},
  Year		= {2006},
  Publisher	= {Elsevier}
}

@Article{	  guermond2006reviewcmame,
  Title		= {An overview of projection methods for incompressible
		  flows},
  Author	= {Guermond, J.-L. and Minev, P. and Shen, Jie},
  Journal	= {Computer Methods in Applied Mechanics and Engineering},
  Year		= {2006},
  Number	= {44-47},
  Volume	= {195}
}

@Article{	  guermond98_nsanalysis,
  Author	= "Guermond, J.~L. and Quartapelle, L.",
  Title		= "{On the approximation of the unsteady {Navier-Stokes}
		  equations by finite element projection methods}",
  Journal	= {Num. Math.},
  Volume	= "80",
  Number	= "",
  Pages		= "207--238",
  Year		= "1998"
}

###Article{	  guermond98_nsanalysis,
  Author	= "Guermond, J.~L. and Quartapelle, L.",
  Title		= "{On the approximation of the unsteady {Navier-Stokes}
		  equations by finite element projection methods}",
  Journal	= {Num. Math.},
  Volume	= "80",
  Number	= "",
  Pages		= "207--238",
  Year		= "1998"
}

@Article{	  guermond_overview_2006,
  langid	= {english},
  Title		= {An Overview of Projection Methods for Incompressible
		  Flows},
  Volume	= {195},
  ISSN		= {00457825},
  URL		= {http://linkinghub.elsevier.com/retrieve/pii/S0045782505004640},
  DOI		= {10.1016/j.cma.2005.10.010},
  Number	= {44-47},
  JournalTitle	= {Computer Methods in Applied Mechanics and Engineering},
  URLDate	= {2016-10-13},
  Date		= {2006-09},
  Pages		= {6011-6045},
  Author	= {Guermond, J.L. and Minev, P. and Shen, Jie}
}

@Article{	  guerra_data_2018,
  langid	= {english},
  Title		= {A Data Assimilation Approach for Non-{{Newtonian}} Blood
		  Flow Simulations in {{3D}} Geometries},
  Volume	= {321},
  ISSN		= {00963003},
  URL		= {https://linkinghub.elsevier.com/retrieve/pii/S0096300317307282},
  DOI		= {10.1016/j.amc.2017.10.029},
  JournalTitle	= {Applied Mathematics and Computation},
  URLDate	= {2019-02-28},
  Year		= {2018-03},
  Pages		= {176-194},
  Author	= {Guerra, Telma and Catarino, Catarina and Mestre, Tania and
		  Santos, Sara and Tiago, Jorge and Sequeira, Adelia}
}

@Article{	  guibert2014group,
  Title		= {Group-wise construction of reduced models for
		  understanding and characterization of pulmonary blood flows
		  from medical images},
  Author	= {Guibert, Romain and Mcleod, Kristin and Caiazzo, Alfonso
		  and Mansi, Tommaso and Fern{\'a}ndez, Miguel A and
		  Sermesant, Maxime and Pennec, Xavier and Vignon-Clementel,
		  Irene E and Boudjemline, Younes and Gerbeau,
		  Jean-Fr{\'e}d{\'e}ric},
  Journal	= {Medical Image Analysis},
  Volume	= {18},
  Number	= {1},
  Pages		= {63--82},
  Year		= {2014},
  Publisher	= {Elsevier}
}

@Article{	  guidoboni-08,
  Author	= {Guidoboni, G. and Glowinski, R. and Cavallini, N. and
		  Canic, S. and Lapin, S.},
  Journal	= {Appl. Math. Lett.},
  Note		= {{D}{O}{I}: 10.1016/j.aml.2008.05.006},
  Title		= {A kinematically coupled time-splitting scheme for
		  fluid-structure interaction in blood flow},
  Volume	= {In Press},
  Year		= {2008}
}

###Article{	  guidoboni-08,
  Author	= {Guidoboni, G. and Glowinski, R. and Cavallini, N. and
		  Canic, S. and Lapin, S.},
  Journal	= {Appl. Math. Lett.},
  Note		= {{D}{O}{I}: 10.1016/j.aml.2008.05.006},
  Title		= {A kinematically coupled time-splitting scheme for
		  fluid-structure interaction in blood flow},
  Volume	= {In Press},
  Year		= {2008}
}

@Article{	  guillard-farhat-00,
  Author	= {Guillard, H. and Farhat, C.},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Number	= {11-12},
  Pages		= {1467--1482},
  Title		= {On the significance of the geometric conservation law for
		  flow computations on moving meshes},
  Volume	= {190},
  Year		= {2000}
}

###Article{	  guillard-farhat-00,
  Author	= {Guillard, H. and Farhat, C.},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Number	= {11-12},
  Pages		= {1467--1482},
  Title		= {On the significance of the geometric conservation law for
		  flow computations on moving meshes},
  Volume	= {190},
  Year		= {2000}
}

@Article{	  guillope-82,
  Author	= {Guillope, C.},
  Journal	= {Ann. Inst. Fourier Grenoble},
  Number	= {3},
  Pages		= {1-37},
  Title		= {Comportement {\`a} l'infini des solutions des
		  {\'e}quations de {Navier-Stokes} et propri{\'e}t{\'e}s des
		  ensembles fonctionnels invariants (ou attracteurs)},
  Volume	= {32},
  Year		= {1982}
}

###Article{	  guillope-82,
  Author	= {Guillope, C.},
  Journal	= {Ann. Inst. Fourier Grenoble},
  Number	= {3},
  Pages		= {1-37},
  Title		= {Comportement {\`a} l'infini des solutions des
		  {\'e}quations de {Navier-Stokes} et propri{\'e}t{\'e}s des
		  ensembles fonctionnels invariants (ou attracteurs)},
  Volume	= {32},
  Year		= {1982}
}

@Article{	  guillope3,
  Author	= {Guillope, C. and Saut, J-C.},
  Journal	= {Nonlinear Anal., Theory, Meth. Appl.},
  Number	= {9},
  Pages		= {849-869},
  Title		= {Existence results for the flow of viscoelastic fluids with
		  a differential constitutive law},
  Volume	= {15},
  Year		= {1990}
}

###Article{	  guillope3,
  Author	= {Guillope, C. and Saut, J-C.},
  Journal	= {Nonlinear Anal., Theory, Meth. Appl.},
  Number	= {9},
  Pages		= {849-869},
  Title		= {Existence results for the flow of viscoelastic fluids with
		  a differential constitutive law},
  Volume	= {15},
  Year		= {1990}
}

@Book{		  gunzburger-89,
  Author	= {Gunzburger, M.D.},
  Publisher	= {{Academic Press}},
  Title		= {Finite element methods for viscous incompressible flows~:
		  a guide to theory, practice, and algorithms},
  Year		= {1989}
}

###Book{	  gunzburger-89,
  Author	= {Gunzburger, M.D.},
  Publisher	= {{Academic Press}},
  Title		= {Finite element methods for viscous incompressible flows~:
		  a guide to theory, practice, and algorithms},
  Year		= {1989}
}

@Article{	  gunzburger-meir-peterson-91,
  Annote	= {mhd, existence, finite element},
  Author	= {Gunzburger, M.D. and Meir, A.J. and Peterson, J.S.},
  code		= {mhd8},
  Journal	= {Mathematics of Computation},
  Month		= {April},
  Number	= {194},
  Pages		= {523-563},
  Title		= {On the existence, uniqueness, and finite element
		  approximation of solutions of the equations of stationary,
		  incompressible magnetohydrodynamics},
  Volume	= {56},
  Year		= {1991}
}

###Article{	  gunzburger-meir-peterson-91,
  Annote	= {mhd, existence, finite element},
  Author	= {Gunzburger, M.D. and Meir, A.J. and Peterson, J.S.},
  code		= {mhd8},
  Journal	= {Mathematics of Computation},
  Month		= {April},
  Number	= {194},
  Pages		= {523-563},
  Title		= {On the existence, uniqueness, and finite element
		  approximation of solutions of the equations of stationary,
		  incompressible magnetohydrodynamics},
  Volume	= {56},
  Year		= {1991}
}

@Book{		  gunzburger_perspectives_2003,
  Location	= {{Philadelphia, PA}},
  Title		= {Perspectives in Flow Control and Optimization},
  ISBN		= {978-0-89871-527-9},
  PageTotal	= {261},
  Series	= {Advances in Design and Control},
  Publisher	= {{Society for Industrial and Applied Mathematics}},
  Year		= {2003},
  Author	= {Gunzburger, Max D.}
}

@Article{	  gurev2011,
  Title		= {Models of cardiac electromechanics based on individual
		  hearts imaging data},
  Author	= {Gurev, Viatcheslav and Lee, Ted and Constantino, Jason and
		  Arevalo, Hermenegild and Trayanova, Natalia A},
  Journal	= {Biomechanics and modeling in mechanobiology},
  Volume	= {10},
  Number	= {3},
  Pages		= {295--306},
  Year		= {2011},
  Publisher	= {Springer}
}

@Book{		  gurtin-81,
  Address	= {New York},
  Author	= {Gurtin, M.E.},
  Publisher	= {Academic Press Inc.},
  Series	= {Mathematics in Science and Engineering},
  Title		= {An introduction to continuum mechanics},
  Volume	= {158},
  Year		= {1981}
}

###Book{	  gurtin-81,
  Address	= {New York},
  Author	= {Gurtin, M.E.},
  Publisher	= {Academic Press Inc.},
  Series	= {Mathematics in Science and Engineering},
  Title		= {An introduction to continuum mechanics},
  Volume	= {158},
  Year		= {1981}
}

@Article{	  ha2019mrm,
  Title		= {4D Flow MRI quantification of blood flow patterns,
		  turbulence and pressure drop in normal and stenotic
		  prosthetic heart valves},
  Author	= {Ha, Hojin and Kvitting, John-Peder Escobar and Dyverfeldt,
		  Petter and Ebbers, Tino},
  Journal	= {Magnetic resonance imaging},
  Volume	= {55},
  Pages		= {118--127},
  Year		= {2019},
  Publisher	= {Elsevier}
}

@Article{	  ha_turbulent_2016,
  Title		= {Turbulent {{Kinetic Energy Measurement Using Phase
		  Contrast MRI}} for {{Estimating}} the {{Post}}-{{Stenotic
		  Pressure Drop}}: {{In Vitro Validation}} and {{Clinical
		  Application}}},
  Volume	= {11},
  ISSN		= {1932-6203},
  URL		= {http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0151540},
  DOI		= {10.1371/journal.pone.0151540},
  ShortTitle	= {Turbulent {{Kinetic Energy Measurement Using Phase
		  Contrast MRI}} for {{Estimating}} the {{Post}}-{{Stenotic
		  Pressure Drop}}},
  Abstract	= {Background Although the measurement of turbulence kinetic
		  energy (TKE) by using magnetic resonance imaging (MRI) has
		  been introduced as an alternative index for quantifying
		  energy loss through the cardiac valve, experimental
		  verification and clinical application of this parameter are
		  still required. Objectives The goal of this study is to
		  verify MRI measurements of TKE by using a phantom stenosis
		  with particle image velocimetry (PIV) as the reference
		  standard. In addition, the feasibility of measuring TKE
		  with MRI is explored. Methods MRI measurements of TKE
		  through a phantom stenosis was performed by using clinical
		  3T MRI scanner. The MRI measurements were verified
		  experimentally by using PIV as the reference standard. In
		  vivo application of MRI-driven TKE was explored in seven
		  patients with aortic valve disease and one healthy
		  volunteer. Transvalvular gradients measured by MRI and
		  echocardiography were compared. Results MRI and PIV
		  measurements of TKE are consistent for turbulent flow
		  (0.666 {$<$} R2 {$<$} 0.738) with a mean difference of
		  â11.13 J/m3 (SD = 4.34 J/m3). Results of MRI and PIV
		  measurements differ by 2.76 Â± 0.82 cm/s (velocity) and
		  â11.13 Â± 4.34 J/m3 (TKE) for turbulent flow (Re {$>$}
		  400). The turbulence pressure drop correlates strongly with
		  total TKE (R2 = 0.986). However, in vivo measurements of
		  TKE are not consistent with the transvalvular pressure
		  gradient estimated by echocardiography. Conclusions These
		  results suggest that TKE measurement via MRI may provide a
		  potential benefit as an energy-loss index to characterize
		  blood flow through the aortic valve. However, further
		  clinical studies are necessary to reach definitive
		  conclusions regarding this technique.},
  Number	= {3},
  JournalTitle	= {PLOS ONE},
  ShortJournal	= {PLOS ONE},
  URLDate	= {2017-10-12},
  Year		= {2016-03-15},
  Pages		= {e0151540},
  Author	= {Ha, Hojin and Kim, Guk Bae and Kweon, Jihoon and Huh,
		  Hyung Kyu and Lee, Sang Joon and Koo, Hyun Jung and Kang,
		  Joon-Won and Lim, Tae-Hwan and Kim, Dae-Hee and Kim,
		  Young-Hak and Kim, Namkug and Yang, Dong Hyun}
}

@Article{	  ha_validation_2019,
  Title		= {Validation of pressure drop assessment using 4D flow
		  MRI-based turbulence production in various shapes of aortic
		  stenoses},
  Author	= {Ha, Hojin and Kvitting, John-Peder and Dyverfeldt, Petter
		  and Ebbers, Tino},
  Journal	= {Magnetic resonance in medicine},
  Volume	= {81},
  Number	= {2},
  Pages		= {893--906},
  Year		= {2019},
  Publisher	= {Wiley Online Library}
}

@Book{		  haacke1999magnetic,
  Title		= {Magnetic resonance imaging: physical principles and
		  sequence design},
  Author	= {Haacke, E Mark and Brown, Robert W and Thompson, Michael R
		  and Venkatesan, Ramesh and others},
  Volume	= {82},
  Year		= {1999},
  Publisher	= {Wiley-Liss New York:}
}

###Book{	  haacke1999magnetic,
  Title		= {Magnetic resonance imaging: physical principles and
		  sequence design},
  Author	= {Haacke, E Mark and Brown, Robert W and Thompson, Michael R
		  and Venkatesan, Ramesh and others},
  Volume	= {82},
  Year		= {1999},
  Publisher	= {Wiley-Liss New York:}
}

@Article{	  hahn1950physrev,
  Title		= {Spin Echoes},
  Author	= {Hahn, E. L.},
  Journal	= {Physical Review},
  Year		= {1950},
  Number	= {4},
  Pages		= {580--594},
  Volume	= {80},
  Abstract	= {Intense radiofrequency power in the form of pulses is
		  applied to an ensemble of spins in a liquid placed in a
		  large static magnetic field H0. The frequency of the pulsed
		  r-f power satisfies the condition for nuclear magnetic
		  resonance, and the pulses last for times which are short
		  compared with the time in which the nutating macroscopic
		  magnetic moment of the entire spin ensemble can decay.
		  After removal of the pulses a non-equilibrium configuration
		  of isochromatic macroscopic moments remains in which the
		  moment vectors precess freely. Each moment vector has a
		  magnitude at a given precession frequency which is
		  determined by the distribution of Larmor frequencies
		  imposed upon the ensemble by inhomogeneities in H0. At
		  times determined by pulse sequences applied in the past the
		  constructive interference of these moment vectors gives
		  rise to observable spontaneous nuclear induction signals.
		  The properties and underlying principles of these spin echo
		  signals are discussed with use of the Bloch theory.
		  Relaxation times are measured directly and accurately from
		  the measurement of echo amplitudes. An analysis includes
		  the effect on relaxation measurements of the self-diffusion
		  of liquid molecules which contain resonant nuclei.
		  Preliminary studies are made of several effects associated
		  with spin echoes, including the observed shifts in magnetic
		  resonance frequency of spins due to magnetic shielding of
		  nuclei contained in molecules.},
  DOI		= {10.1103/PhysRev.80.580},
  owner		= {david},
  timestamp	= {2015-05-19 16:44:19},
  URL		= {http://link.aps.org/doi/10.1103/PhysRev.80.580},
  URLDate	= {2015-05-19}
}

@Article{	  haj2012aorticvalve3d,
  Title		= {A general three-dimensional parametric geometry of the
		  native aortic valve and root for biomechanical modeling},
  Author	= {Haj-Ali, R. and Marom, G. and Zekry, S. and Rosenfeld, M.
		  and Raanani, E.},
  Journal	= {Journal of biomechanics},
  Volume	= {45},
  Number	= {14},
  Pages		= {2392--2397},
  Year		= {2012},
  Publisher	= {Elsevier}
}

@Article{	  hales2012pbmb,
  Title		= {Histo-anatomical structure of the living isolated rat
		  heart in two contraction states assessed by diffusion
		  tensor MRI.},
  Author	= {Hales, Patrick W. and Schneider, J{\"{u}}rgen E. and
		  Burton, Rebecca A B. and Wright, Benjamin J. and
		  Bollensdorff, Christian and Kohl, Peter},
  Journal	= {Prog Biophys Mol Biol},
  Year		= {2012},
  Number	= {2-3},
  Pages		= {319--330},
  Volume	= {110},
  Abstract	= {Deformation and wall-thickening of ventricular myocardium
		  are essential for cardiac pump function. However, insight
		  into the histo-anatomical basis for cardiac tissue
		  re-arrangement during contraction is limited. In this
		  report, we describe dynamic changes in regionally
		  prevailing cardiomyocyte (fibre) and myolaminar (sheet)
		  orientations, using Diffusion Tensor Imaging (DTI) of
		  ventricles in the same living heart in two different
		  mechanical states. Hearts, isolated from Sprague-Dawley
		  rats, were Langendorff-perfused and imaged, initially in
		  their slack state during cardioplegic arrest, then during
		  lithium-induced contracture. Regional fibre- and
		  sheet-orientations were derived from DTI-data on a
		  voxel-wise basis. Contraction was accompanied with a
		  decrease in left-handed helical fibres (handedness relative
		  to the baso-apical direction) in basal, equatorial, and
		  apical sub-epicardium (by 14.0\%, 17.3\%, 15.8\%
		  respectively; pÂ <Â 0.001), and an increase in right-handed
		  helical fibres of the sub-endocardium (by 11.0\%, 12.1\%
		  and 16.1\%, respectively; pÂ <Â 0.001). Two predominant
		  sheet-populations were observed, with sheet-angles of
		  either positive (?+) or negative (?-) polarity relative to
		  a 'chamber-horizontal plane' (defined as normal to the left
		  ventricular long-axis). In contracture, mean
		  'intersection'-angle (geometrically quantifiable
		  intersection of sheet-angle projections) between ?+ and ?-
		  sheet-populations increased from 86.2Â Â±Â 5.5Â° (slack) to
		  108.3Â Â±Â 5.4Â° (pÂ <Â 0.001). Subsequent high-resolution
		  DTI of fixed myocardium, and histological sectioning,
		  reconfirmed the existence of alternating sheet-plane
		  populations. Our results suggest that myocardial tissue
		  layers in alternating sheet-populations align into a more
		  chamber-horizontal orientation during contraction. This
		  re-arrangement occurs via an accordion-like mechanism that,
		  combined with inter-sheet slippage, can significantly
		  contribute to ventricular deformation, including
		  wall-thickening in a predominantly centripetal direction
		  and baso-apical shortening.},
  DOI		= {10.1016/j.pbiomolbio.2012.07.014},
  Institution	= {Department of Cardiovascular Medicine, University of
		  Oxford, Oxford OX3 7BN, UK. p.hales@ucl.ac.uk},
  Keywords	= {Animals; Diffusion Tensor Imaging; Female; Heart, anatomy
		  /&/ histology; Muscle Contraction; Myocardium, cytology;
		  Perfusion; Rats; Rats, Sprague-Dawley; Tissue Survival},
  Language	= {eng},
  medline-pst	= {ppublish},
  owner		= {stoeckc},
  pii		= {S0079-6107(12)00067-3},
  pmid		= {23043978},
  timestamp	= {2015.07.24},
  URL		= {http://dx.doi.org/10.1016/j.pbiomolbio.2012.07.014}
}

@Article{	  hall1995jacc,
  Title		= {Time course of improvement in left ventricular function,
		  mass and geometry in patients with congestive heart failure
		  treated with beta-adrenergic blockade},
  Author	= {Hall, Shelley A. and Cigarroa, Carlos G. and Marcoux,
		  Lucille and Risser, Richard C. and Grayburn, Paul A. and
		  Eichhorn, Eric J.},
  Journal	= {Journal of the American College of Cardiology},
  Year		= {1995},
  Number	= {5},
  Pages		= {1154-1161},
  Volume	= {25},
  DOI		= {10.1016/0735-1097(94)00543-Y},
  EPrint	= {/data/Journals/JAC/24317/0543Y.pdf},
  File		= {hall95.pdf:hall95.pdf:PDF},
  timestamp	= {2015/09/13},
  URL		= { + http://dx.doi.org/10.1016/0735-1097(94)00543-Y}
}

@Article{	  hall_calculation_1989,
  langid	= {english},
  Title		= {Calculation of Unsteady Flows in Turbomachinery Using the
		  {{linearizedEuler}} Equations},
  Volume	= {27},
  ISSN		= {0001-1452, 1533-385X},
  URL		= {http://arc.aiaa.org/doi/10.2514/3.10178},
  DOI		= {10.2514/3.10178},
  Number	= {6},
  JournalTitle	= {AIAA Journal},
  URLDate	= {2019-08-24},
  Date		= {1989-06},
  Pages		= {777-787},
  Author	= {Hall, Kenneth C. and Crawley, Edward F.}
}

@Article{	  hansbo-05,
  Author	= {Hansbo, P.},
  Journal	= {GAMM-Mitt.},
  Number	= {2},
  Pages		= {183--206},
  Title		= {Nitsche's method for interface problems in computational
		  mechanics},
  Volume	= {28},
  Year		= {2005}
}

###Article{	  hansbo-05,
  Author	= {Hansbo, P.},
  Journal	= {GAMM-Mitt.},
  Number	= {2},
  Pages		= {183--206},
  Title		= {Nitsche's method for interface problems in computational
		  mechanics},
  Volume	= {28},
  Year		= {2005}
}

@Article{	  hansbo-hermansson-thomas-04,
  Author	= {Hansbo, P. and Hermansson, J. and Svedberg, T.},
  ISSN		= {0045-7825},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Number	= {39-41},
  Pages		= {4195--4206},
  Title		= {Nitsche's method combined with space-time finite elements
		  for {ALE} fluid-structure interaction problems},
  Volume	= {193},
  Year		= {2004}
}

###Article{	  hansbo-hermansson-thomas-04,
  Author	= {Hansbo, P. and Hermansson, J. and Svedberg, T.},
  ISSN		= {0045-7825},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Number	= {39-41},
  Pages		= {4195--4206},
  Title		= {Nitsche's method combined with space-time finite elements
		  for {ALE} fluid-structure interaction problems},
  Volume	= {193},
  Year		= {2004}
}

@Article{	  hansbo05,
  Author	= {Hansbo, P.},
  Title		= {Nitsche's method for interface problems in computational
		  mechanics},
  Journal	= {GAMM-Mitt.},
  fjournal	= {GAMM-Mitteilungen},
  Volume	= {28},
  Year		= {2005},
  Number	= {2},
  Pages		= {183--206},
  ISSN		= {0936-7195},
  mrclass	= {65N30 (74G15 74S30)},
  mrnumber	= {MR2192480 (2006j:65345)},
  mrreviewer	= {Igor Bock}
}

###Article{	  hansbo05,
  Author	= {Hansbo, P.},
  Title		= {Nitsche's method for interface problems in computational
		  mechanics},
  Journal	= {GAMM-Mitt.},
  fjournal	= {GAMM-Mitteilungen},
  Volume	= {28},
  Year		= {2005},
  Number	= {2},
  Pages		= {183--206},
  ISSN		= {0936-7195},
  mrclass	= {65N30 (74G15 74S30)},
  mrnumber	= {MR2192480 (2006j:65345)},
  mrreviewer	= {Igor Bock}
}

@Article{	  hansbohansbo02,
  Author	= "Hansbo, A. and Hansbo, P.",
  Title		= "{An unfitted finite element method, based on Nitsche's
		  method, for elliptic interface problems}",
  Journal	= cma,
  Volume	= "191",
  Pages		= "5537--5552",
  Year		= "2002"
}

###Article{	  hansbohansbo02,
  Author	= "Hansbo, A. and Hansbo, P.",
  Title		= "{An unfitted finite element method, based on Nitsche's
		  method, for elliptic interface problems}",
  Journal	= cma,
  Volume	= "191",
  Pages		= "5537--5552",
  Year		= "2002"
}

@Article{	  hansbohansbo04,
  Author	= "{Hansbo, A. and Hansbo, P.}",
  Title		= "{A finite element method for the simulation of strong and
		  weak discountinuities in solid mechanics}",
  Journal	= cma,
  Volume	= "193",
  Pages		= "3523--3540",
  Year		= "2004"
}

###Article{	  hansbohansbo04,
  Author	= "{Hansbo, A. and Hansbo, P.}",
  Title		= "{A finite element method for the simulation of strong and
		  weak discountinuities in solid mechanics}",
  Journal	= cma,
  Volume	= "193",
  Pages		= "3523--3540",
  Year		= "2004"
}

@Article{	  happel-59,
  Author	= {Happel, J.},
  Journal	= {AIChE J.},
  Pages		= {174-177},
  Title		= {Viscous flow relative to arrays of cylinders},
  Volume	= {5},
  Year		= {1959}
}

###Article{	  happel-59,
  Author	= {Happel, J.},
  Journal	= {AIChE J.},
  Pages		= {174-177},
  Title		= {Viscous flow relative to arrays of cylinders},
  Volume	= {5},
  Year		= {1959}
}

@Article{	  haraldsson2018ppeturb,
  Title		= {Assessment of Reynolds stress components and turbulent
		  pressure loss using 4D flow MRI with extended motion
		  encoding},
  Author	= {Haraldsson, Henrik and Kefayati, Sarah and Ahn, Sinyeob
		  and Dyverfeldt, Petter and Lantz, Jonas and Karlsson, Matts
		  and Laub, Gerhard and Ebbers, Tino and Saloner, David},
  Journal	= {Magnetic resonance in medicine},
  Volume	= {79},
  Number	= {4},
  Pages		= {1962--1971},
  Year		= {2018},
  Publisher	= {Wiley Online Library}
}

@Article{	  hardman_comparison_2013,
  Title		= {Comparison of Patient-Specific Inlet Boundary Conditions
		  in the Numerical Modelling of Blood Flow in Abdominal
		  Aortic Aneurysm Disease},
  Volume	= {29},
  Number	= {2},
  JournalTitle	= {International Journal for Numerical Methods in Biomedical
		  Engineering},
  Year		= {2013},
  Pages		= {165--178},
  Author	= {Hardman, David and Semple, Scott I. and Richards, Jennifer
		  MJ and Hoskins, Peter R.}
}

@Article{	  harmer2013in,
  Title		= {In vivo myofibre architecture in the systemic right
		  ventricle.},
  Author	= {Harmer, Jack and Pushparajah, Kuberan and Toussaint,
		  Nicolas and Stoeck, Christian T. and Chan, Rachel and
		  Atkinson, David and Razavi, Reza and Kozerke, Sebastian},
  Journal	= {European Heart Journal},
  Year		= {2013},
  Month		= {Dec},
  Number	= {47},
  Pages		= {3640},
  Volume	= {34},
  Institution	= {Division of Imaging Sciences and Biomedical Engineering,
		  King's College London, London, UK.},
  Keywords	= {Adult; Diffusion Magnetic Resonance Imaging; Humans;
		  Magnetic Resonance Angiography; Medical Illustration;
		  Transposition of Great Vessels, pathology/surgery;
		  Ventricular Dysfunction, Right, pathology},
  Language	= {eng},
  medline-pst	= {ppublish},
  owner		= {andreas},
  pii		= {eht442},
  pmid		= {24142348},
  timestamp	= {2015.06.17}
}

@Article{	  heil-04,
  Author	= {Heil, M.},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Number	= {1-2},
  Pages		= {1--23},
  Title		= {An efficient solver for the fully coupled solution of
		  large-displacement fluid-structure interaction problems},
  Volume	= {193},
  Year		= {2004}
}

###Article{	  heil-04,
  Author	= {Heil, M.},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Number	= {1-2},
  Pages		= {1--23},
  Title		= {An efficient solver for the fully coupled solution of
		  large-displacement fluid-structure interaction problems},
  Volume	= {193},
  Year		= {2004}
}

@Article{	  heinen_vivo_2017,
  langid	= {english},
  Title		= {In Vivo Validation of Patient-Specific Pressure Gradient
		  Calculations for Iliac Artery Stenosis Severity
		  Assessment},
  Volume	= {6},
  ISSN		= {2047-9980},
  URL		= {https://research.tue.nl/en/publications/in-vivo-validation-of-patient-specific-pressure-gradient-calculat},
  DOI		= {10.1161/JAHA.117.007328},
  Number	= {12},
  JournalTitle	= {Journal of the American Heart Association},
  URLDate	= {2019-02-28},
  Year		= {2017-12},
  Pages		= {e007328},
  Author	= {Heinen, Stefan G. H. and van den Heuvel, Daniel A. F. and
		  Huberts, Wouter and de Boer, Sanne W. and van de Vosse,
		  Frans N. and Delhaas, Tammo and de Vries, Jean-Paul P. M.},
  EPrintType	= {pmid},
  EPrint	= {29275367}
}

@Article{	  helm-etal-05a,
  Author	= {Helm, P. and Beg, M. F. and Miller, M. I. and Winslow, R.
		  L.},
  Title		= {Measuring and Mapping Cardiac Fiber and Laminar
		  Architecture Using Diffusion Tensor {MR} Imaging},
  Journal	= {Annals of the New York Academy of Sciences},
  Volume	= {1047},
  Number	= {1},
  Publisher	= {Blackwell Publishing Ltd},
  ISSN		= {1749-6632},
  DOI		= {10.1196/annals.1341.026},
  Pages		= {296--307},
  Keywords	= {computational modeling, fiber orientation, MRI, sheet
		  orientation, ventricular anatomy},
  Year		= {2005}
}

@Article{	  helm-etal-05b,
  Author	= {Helm, P. and Tseng, H.-J. and Younes, L. and McVeigh, E.
		  R. and Winslow, R. L.},
  Title		= {Ex vivo {3D} diffusion tensor imaging and quantification
		  of cardiac laminar structure},
  Journal	= {Magnetic Resonance in Medicine},
  Volume	= {54},
  Number	= {4},
  Publisher	= {Wiley Subscription Services, Inc., A Wiley Company},
  ISSN		= {1522-2594},
  DOI		= {10.1002/mrm.20622},
  Pages		= {850--859},
  Keywords	= {diffusion tensor MRI, myocardial microstructure,
		  anisotropic diffusion, myofiber laminar sheets, cardiac},
  Year		= {2005}
}

@Article{	  helm2005mrm,
  Title		= {Ex vivo 3D diffusion tensor imaging and quantification of
		  cardiac laminar structure.},
  Author	= {Helm, Patrick A. and Tseng, Hsiang-Jer and Younes, Laurent
		  and McVeigh, Elliot R. and Winslow, Raimond L.},
  Journal	= {Magn Reson Med},
  Year		= {2005},
  Month		= {Oct},
  Number	= {4},
  Pages		= {850--859},
  Volume	= {54},
  Abstract	= {A three-dimensional (3D) diffusion-weighted imaging (DWI)
		  method for measuring cardiac fiber structure at high
		  spatial resolution is presented. The method was applied to
		  the ex vivo reconstruction of the fiber architecture of
		  seven canine hearts. A novel hypothesis-testing method was
		  developed and used to show that distinct populations of
		  secondary and tertiary eigenvalues may be distinguished at
		  reasonable confidence levels (P < or = 0.01) within the
		  canine ventricle. Fiber inclination and sheet angles are
		  reported as a function of transmural depth through the
		  anterior, lateral, and posterior left ventricle (LV) free
		  wall. Within anisotropic regions, two consistent and
		  dominant orientations were identified, supporting published
		  results from histological studies and providing strong
		  evidence that the tertiary eigenvector of the diffusion
		  tensor (DT) defines the sheet normal.},
  DOI		= {10.1002/mrm.20622},
  Institution	= {Center for Cardiovascular Bioinformatics and Modeling,
		  Johns Hopkins University, Baltimore, MD 21218, USA.
		  phelm@bme.jhu.edu},
  Keywords	= {Algorithms; Animals; Diffusion Magnetic Resonance Imaging,
		  methods; Dogs; Heart Ventricles, cytology; Image
		  Enhancement, methods; Image Interpretation,
		  Computer-Assisted, methods; Imaging, Three-Dimensional,
		  methods; In Vitro Techniques; Information Storage and
		  Retrieval, methods; Male; Pattern Recognition, Automated,
		  methods; Reproducibility of Results; Sensitivity and
		  Specificity},
  Language	= {eng},
  medline-pst	= {ppublish},
  owner		= {stoeckc},
  pmid		= {16149057},
  timestamp	= {2015.07.24},
  URL		= {http://dx.doi.org/10.1002/mrm.20622}
}

@Article{	  helm2006evidence,
  Title		= {Evidence of structural remodeling in the dyssynchronous
		  failing heart},
  Author	= {Helm, Patrick A and Younes, Laurent and Beg, Mirza F and
		  Ennis, Daniel B and Leclercq, Christophe and Faris, Owen P
		  and McVeigh, Elliot and Kass, David and Miller, Michael I
		  and Winslow, Raimond L},
  Journal	= {Circulation Research},
  Volume	= {98},
  Number	= {1},
  Pages		= {125--132},
  Year		= {2006},
  Publisher	= {Am Heart Assoc}
}

@Article{	  henzler2010ejr,
  Title		= {Diffusion and perfusion {MRI} of the lung and
		  mediastinum},
  Author	= {Henzler, Thomas and Schmid-Bindert, Gerald and Schoenberg,
		  Stefan O and Fink, Christian},
  Journal	= {European journal of radiology},
  Year		= {2010},
  Number	= {3},
  Pages		= {329--336},
  Volume	= {76},
  Publisher	= {Elsevier}
}

@Article{	  herment2000mrm,
  Title		= {Improved estimation of velocity and flow rate using
		  regularized three-point phase-contrast velocimetry.},
  Author	= {Herment, A. and Mousseaux, E. and Jolivet, O. and
		  DeCesare, A. and Frouin, F. and Todd-Pokropek, A. and
		  Bittoun, J.},
  Journal	= {Magn Reson Med},
  Year		= {2000},
  Month		= {Jul},
  Number	= {1},
  Pages		= {122--128},
  Volume	= {44},
  Abstract	= {We improved the three-point phase-contrast method by
		  regularization of MR velocity data after acquisition of a
		  low velocity-to-noise ratio (VNR) velocity image and a high
		  VNR aliased velocity image. The phase unwrapping algorithm
		  is based on the assumed correlation of the velocity of
		  adjacent flow voxels on the low VNR and the unaliased high
		  VNR images. We used Fourier encoding with eight
		  velocity-encoding gradient steps to obtain reference
		  velocity images of the aorta from five subjects (274
		  images) and compared them with the phase-contrast and
		  three-point phase-contrast images with and without
		  regularization. The VNR of the regularized velocity image
		  was improved by 9.1 dB and the VNR of the three-point
		  phase-contrast velocity image was improved by 0.7 dB with
		  respect to the low first moment velocity image.
		  Corresponding improvements of 9 dB and 3.7 dB were obtained
		  for the estimations of instantaneous flow rate. Magn Reson
		  Med 44:122-128, 2000.},
  Institution	= {INSERM U.494 CHU PitiÃ©, Paris, France.
		  herment@imed.jussieu.fr},
  Keywords	= {Adult; Algorithms; Aorta, physiology; Blood Flow Velocity,
		  physiology; Fourier Analysis; Hemorheology; Humans; Image
		  Processing, Computer-Assisted; Least-Squares Analysis;
		  Linear Models; Magnetic Resonance Imaging, methods; Male;
		  Middle Aged; Phantoms, Imaging},
  Language	= {eng},
  medline-pst	= {ppublish},
  owner		= {stoeckc},
  pii		= {3.0.CO;2-C},
  pmid		= {10893530},
  timestamp	= {2015.07.24}
}

@Unpublished{	  heyden2015submitted,
  Title		= {Material modeling of cardiac valve tissue: Experiments,
		  constitutive analysis and numerical investigation},
  Author	= {Stefanie Heyden and Andreas Nagler and Cristobal Bertoglio
		  and Jonas Biehler and Michael W. Gee and Wolfgang A. Wall
		  and Michael Ortiz},
  Note		= {submitted for publication},
  Year		= {2015},
  File		= {heyden15.pdf:heyden15.pdf:PDF},
  owner		= {pfaller},
  timestamp	= {2015/09/23}
}

@Article{	  heys-etal-10,
  Title		= {Weighted least-squares finite elements based on particle
		  imaging velocimetry data},
  Author	= {Heys, J.J. and Manteuffel, T.A. and McCormick, S.F. and
		  Milano, M. and Westerdale, J. and Belohlavek, M.},
  Journal	= {Journal of Computational Physics},
  Volume	= {229},
  Number	= {1},
  Pages		= {107--118},
  Year		= {2010},
  Publisher	= {Elsevier}
}

###Article{	  heys-etal-10,
  Title		= {Weighted least-squares finite elements based on particle
		  imaging velocimetry data},
  Author	= {Heys, J.J. and Manteuffel, T.A. and McCormick, S.F. and
		  Milano, M. and Westerdale, J. and Belohlavek, M.},
  Journal	= {Journal of Computational Physics},
  Volume	= {229},
  Number	= {1},
  Pages		= {107--118},
  Year		= {2010},
  Publisher	= {Elsevier}
}

@Article{	  heys2010weighted,
  Title		= {Weighted least-squares finite elements based on particle
		  imaging velocimetry data},
  Author	= {Heys, Jeffrey J and Manteuffel, Thomas A and McCormick,
		  Stephen F and Milano, M and Westerdale, John and
		  Belohlavek, Marek},
  Journal	= {Journal of Computational Physics},
  Volume	= {229},
  Number	= {1},
  Pages		= {107--118},
  Year		= {2010},
  Publisher	= {Elsevier}
}

@Article{	  heys_weighted_2010,
  Title		= {Weighted Least-Squares Finite Elements Based on Particle
		  Imaging Velocimetry Data},
  Volume	= {229},
  Number	= {1},
  JournalTitle	= {Journal of Computational Physics},
  Year		= {2010},
  Pages		= {107--118},
  Author	= {Heys, Jeffrey J. and Manteuffel, Thomas A. and McCormick,
		  Stephen F. and Milano, M. and Westerdale, John and
		  Belohlavek, Marek}
}

@Article{	  heywood-70,
  Author	= {Heywood, J.G.},
  Journal	= {Arch. Rat. Mech. Anal.},
  Pages		= {48-60},
  Title		= {On stationary solutions of the {Navier-Stokes} equations
		  as limits of nonstationary solutions},
  Volume	= {37},
  Year		= {1970}
}

###Article{	  heywood-70,
  Author	= {Heywood, J.G.},
  Journal	= {Arch. Rat. Mech. Anal.},
  Pages		= {48-60},
  Title		= {On stationary solutions of the {Navier-Stokes} equations
		  as limits of nonstationary solutions},
  Volume	= {37},
  Year		= {1970}
}

@Article{	  heywood-80,
  Author	= {Heywood, J.G.},
  Journal	= {Indiana Univ. Math. J.},
  Number	= {5},
  Pages		= {639-681},
  Title		= {The {Navier-Stokes} equations~: on the existence,
		  regularity and decay of solutions},
  Volume	= {29},
  Year		= {1980}
}

###Article{	  heywood-80,
  Author	= {Heywood, J.G.},
  Journal	= {Indiana Univ. Math. J.},
  Number	= {5},
  Pages		= {639-681},
  Title		= {The {Navier-Stokes} equations~: on the existence,
		  regularity and decay of solutions},
  Volume	= {29},
  Year		= {1980}
}

@Article{	  heywood-rannacher-turek-96,
  Author	= {J.G. Heywood and R. Rannacher and S. Turek},
  Journal	= {International Journal for Numerical Methods in Fluids},
  Pages		= {325--352},
  Title		= {Artificial Boundaries and Flux and Pressure Conditions for
		  the Incompressible {N}avier--{S}tokes Equations},
  Volume	= {22},
  Year		= {1996}
}

###Article{	  heywood-rannacher-turek-96,
  Author	= {J.G. Heywood and R. Rannacher and S. Turek},
  Journal	= {International Journal for Numerical Methods in Fluids},
  Pages		= {325--352},
  Title		= {Artificial Boundaries and Flux and Pressure Conditions for
		  the Incompressible {N}avier--{S}tokes Equations},
  Volume	= {22},
  Year		= {1996}
}

@Article{	  heywood_artificial_1996,
  Title		= {Artificial Boundaries and Flux and Pressure Conditions for
		  the Incompressible Navier-Stokes Equations},
  Volume	= {22},
  Number	= {5},
  JournalTitle	= {International Journal for Numerical Methods in Fluids},
  Year		= {1996},
  Pages		= {325--352},
  Author	= {Heywood, John G. and Rannacher, Rolf and Turek, Stefan}
}

@Article{	  hfb86,
  Author	= {Hughes, T.J.R. and Franca, L.P. and Balestra, M.},
  Title		= {A new finite element formulation for computational fluid
		  dynamics. {V}. {C}ircumventing the {B}abu\v ska-{B}rezzi
		  condition: a stable {P}etrov-{G}alerkin formulation of the
		  {S}tokes problem accommodating equal-order interpolations},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Volume	= {59},
  Year		= {1986},
  Number	= {1},
  Pages		= {85--99}
}

###Article{	  hfb86,
  Author	= {Hughes, T.J.R. and Franca, L.P. and Balestra, M.},
  Title		= {A new finite element formulation for computational fluid
		  dynamics. {V}. {C}ircumventing the {B}abu\v ska-{B}rezzi
		  condition: a stable {P}etrov-{G}alerkin formulation of the
		  {S}tokes problem accommodating equal-order interpolations},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Volume	= {59},
  Year		= {1986},
  Number	= {1},
  Pages		= {85--99}
}

@Article{	  hh03,
  Author	= {Hansbo, P. and Hermansson, J.},
  Journal	= {Computational Mechanics},
  Number	= {1--2},
  Pages		= {134--139},
  Title		= {Nitsche's method for coupling non-matching meshes in
		  fluid-structure vibration problems},
  Volume	= {32},
  Year		= {2003}
}

###Article{	  hh03,
  Author	= {Hansbo, P. and Hermansson, J.},
  Journal	= {Computational Mechanics},
  Number	= {1--2},
  Pages		= {134--139},
  Title		= {Nitsche's method for coupling non-matching meshes in
		  fluid-structure vibration problems},
  Volume	= {32},
  Year		= {2003}
}

@Article{	  hhs04,
  Author	= {Hansbo, P. and Hermansson, J. and Svedberg, T.},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Pages		= {4195--4206},
  Title		= {Nitsche's method combined with space-time finite elements
		  for {A}{L}{E} fluid-structure interaction problems},
  Volume	= {193},
  Year		= {2004}
}

###Article{	  hhs04,
  Author	= {Hansbo, P. and Hermansson, J. and Svedberg, T.},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Pages		= {4195--4206},
  Title		= {Nitsche's method combined with space-time finite elements
		  for {A}{L}{E} fluid-structure interaction problems},
  Volume	= {193},
  Year		= {2004}
}

@Article{	  higashitani-iimura-98,
  Annote	= {blood, aggregation, shear flow, elongational flow},
  Author	= {Higashitani, K. and Ilmua K.},
  code		= {cel3},
  Journal	= {J. Colloid Interface Sci.},
  Pages		= {320-327},
  Title		= {Two dimensional simulation of the breakup process of
		  aggregates in shear and elongational flows},
  Volume	= {204},
  Year		= {1998}
}

###Article{	  higashitani-iimura-98,
  Annote	= {blood, aggregation, shear flow, elongational flow},
  Author	= {Higashitani, K. and Ilmua K.},
  code		= {cel3},
  Journal	= {J. Colloid Interface Sci.},
  Pages		= {320-327},
  Title		= {Two dimensional simulation of the breakup process of
		  aggregates in shear and elongational flows},
  Volume	= {204},
  Year		= {1998}
}

@Article{	  hilhorst-van-der-hout-peletier-00,
  Author	= {Hilhorst, D. and van der Hout, R. and Peletier, L. A.},
  code		= {por23},
  Journal	= {Nonlinear Anal.},
  Number	= {5-6, Ser. A: Theory Meth. Appl.},
  Pages		= {803--823},
  Title		= {Nonlinear diffusion in the presence of fast reaction},
  Volume	= {41},
  Year		= {2000}
}

###Article{	  hilhorst-van-der-hout-peletier-00,
  Author	= {Hilhorst, D. and van der Hout, R. and Peletier, L. A.},
  code		= {por23},
  Journal	= {Nonlinear Anal.},
  Number	= {5-6, Ser. A: Theory Meth. Appl.},
  Pages		= {803--823},
  Title		= {Nonlinear diffusion in the presence of fast reaction},
  Volume	= {41},
  Year		= {2000}
}

@Article{	  hilhorst-van-der-hout-peletier-96,
  Author	= {Hilhorst, D. and van der Hout, R. and Peletier, L. A.},
  code		= {por21},
  Journal	= {J. Math. Anal. Appl.},
  Number	= {2},
  Pages		= {349--373},
  Title		= {The fast reaction limit for a reaction-diffusion system},
  Volume	= {199},
  Year		= {1996}
}

###Article{	  hilhorst-van-der-hout-peletier-96,
  Author	= {Hilhorst, D. and van der Hout, R. and Peletier, L. A.},
  code		= {por21},
  Journal	= {J. Math. Anal. Appl.},
  Number	= {2},
  Pages		= {349--373},
  Title		= {The fast reaction limit for a reaction-diffusion system},
  Volume	= {199},
  Year		= {1996}
}

@Article{	  hilhorst-van-der-hout-peletier-97,
  Author	= {Hilhorst, D. and van der Hout, R. and Peletier, L. A.},
  code		= {por22},
  fjournal	= {The University of Tokyo. Journal of Mathematical
		  Sciences},
  Journal	= {J. Math. Sci. Univ. Tokyo},
  Number	= {3},
  Pages		= {469--517},
  Title		= {Diffusion in the presence of fast reaction: the case of a
		  general monotone reaction term},
  Volume	= {4},
  Year		= {1997}
}

###Article{	  hilhorst-van-der-hout-peletier-97,
  Author	= {Hilhorst, D. and van der Hout, R. and Peletier, L. A.},
  code		= {por22},
  fjournal	= {The University of Tokyo. Journal of Mathematical
		  Sciences},
  Journal	= {J. Math. Sci. Univ. Tokyo},
  Number	= {3},
  Pages		= {469--517},
  Title		= {Diffusion in the presence of fast reaction: the case of a
		  general monotone reaction term},
  Volume	= {4},
  Year		= {1997}
}

@Article{	  hiratzka_2010_2010,
  Title		= {2010
		  {{ACCF}}/{{AHA}}/{{AATS}}/{{ACR}}/{{ASA}}/{{SCA}}/{{SCAI}}/{{SIR}}/
		  {{STS}}/{{SVM}} Guidelines for the Diagnosis and Management
		  of Patients with Thoracic Aortic Disease},
  Volume	= {55},
  Number	= {14},
  JournalTitle	= {Journal of the American College of Cardiology},
  Year		= {2010},
  Pages		= {e27--e129},
  Author	= {Hiratzka, Loren F. and Bakris, George L. and Beckman,
		  Joshua A. and Bersin, Robert M. and Carr, Vincent F. and
		  Casey, Donald E. and Eagle, Kim A. and Hermann, Luke K. and
		  Isselbacher, Eric M. and Kazerooni, Ella A.}
}

@Article{	  hirt-amsden-cook-74,
  Author	= {Hirt, C.W. and Amsden, A.A. and Cook, J.L.},
  Journal	= { J. Comput. Phys.},
  Number	= {3},
  Pages		= {227--253},
  Title		= {An arbitrary Lagrangian-Eulerian computing method for all
		  flow speeds},
  Volume	= {14},
  Year		= {1974}
}

###Article{	  hirt-amsden-cook-74,
  Author	= {Hirt, C.W. and Amsden, A.A. and Cook, J.L.},
  Journal	= { J. Comput. Phys.},
  Number	= {3},
  Pages		= {227--253},
  Title		= {An arbitrary Lagrangian-Eulerian computing method for all
		  flow speeds},
  Volume	= {14},
  Year		= {1974}
}

@PhdThesis{	  ho-89,
  Author	= {Ho, L.W.},
  code		= {mob8},
  School	= {Massachussets Institute of Technology},
  Title		= {A legendre spectral element method for simulation of
		  incompressible unsteady viscous free-surface flows},
  Year		= {1989}
}

###PhdThesis{	  ho-89,
  Author	= {Ho, L.W.},
  code		= {mob8},
  School	= {Massachussets Institute of Technology},
  Title		= {A legendre spectral element method for simulation of
		  incompressible unsteady viscous free-surface flows},
  Year		= {1989}
}

@Article{	  ho2006,
  Title		= {Anatomy, echocardiography, and normal right ventricular
		  dimensions},
  Author	= {Ho, S.Y. and Nihoyannopoulos, P.},
  Journal	= {Heart},
  Volume	= {92},
  Number	= {suppl 1},
  Pages		= {i2--i13},
  Year		= {2006},
  Publisher	= {BMJ Publishing Group Ltd and British Cardiovascular
		  Society}
}

@Article{	  holmes-79,
  Author	= {Holmes, M. H.},
  Journal	= {J. Differential Equations},
  Number	= {3},
  Pages		= {388--397},
  Title		= {A spectral problem in hydroelasticity},
  Volume	= {32},
  Year		= {1979}
}

###Article{	  holmes-79,
  Author	= {Holmes, M. H.},
  Journal	= {J. Differential Equations},
  Number	= {3},
  Pages		= {388--397},
  Title		= {A spectral problem in hydroelasticity},
  Volume	= {32},
  Year		= {1979}
}

@Article{	  holmes2005arbe,
  Title		= {Structure and mechanics of healing myocardial infarcts},
  Author	= {Holmes, Jeffrey W and Borg, Thomas K and Covell, James W},
  Journal	= {Annual Review of Biomedical Engineering},
  Year		= {2005},
  Pages		= {223--253},
  Volume	= {7},
  File		= {:holmes05.pdf:PDF},
  Publisher	= {Annual Reviews},
  timestamp	= {2014/11/25}
}

@Article{	  holton_evaluation_2005,
  Title		= {Evaluation of In-Stent Stenosis by Magnetic Resonance
		  Phase-Velocity Mapping in Nickel-Titanium Stents},
  Author	= {Holton, Andrea D. and Walsh, Edward G. and Brott, Brigitta
		  C. and Venugopalan, Ramakrishna and Hershey, Bradley and
		  Ito, Yasushi and Shih, Alan and Koomullil, Roy and
		  Anayiotos, Andreas S.},
  Year		= {2005},
  Volume	= {22},
  Pages		= {248--257},
  Journal	= {Journal of Magnetic Resonance Imaging},
  Number	= {2}
}

@Article{	  holzapfel-odgen-09,
  Volume	= {14},
  Title		= {On planar biaxial tests for anisotropic nonlinearly
		  elastic solids: a continuum mechanical framework },
  Author	= {Holzapfel, G.A. and Ogden, R.W.},
  Year		= {2009},
  Pages		= {474--489},
  Journal	= {Mathematics and Mechanics of Solids},
  Abstract	= {The mechanical testing of anisotropic nonlinearly elastic
		  solids is a topic of considerable and increasing interest.
		  The results of such testing are important, in particular,
		  for the characterization of the material properties and the
		  development of constitutive laws that can be used for
		  predictive purposes. However, the literature on this topic
		  in the context of soft tissue biomechanics, in particular,
		  includes some papers that are misleading since they contain
		  errors and false statements. Claims that planar biaxial
		  testing can fully characterize the three-dimensional
		  anisotropic elastic properties of soft tissues are
		  incorrect. There is therefore a need to clarify the extent
		  to which biaxial testing can be used for determining the
		  elastic properties of these materials. In this paper this
		  is explained on the basis of the equations of finite
		  deformation transversely isotropic elasticity, and general
		  planar anisotropic elasticity. It is shown that it is
		  theoretically impossible to fully characterize the
		  properties of anisotropic elastic materials using such
		  tests unless some assumption is made that enables a
		  suitable subclass of models to be preselected. Moreover, it
		  is shown that certain assumptions underlying the analysis
		  of planar biaxial tests are inconsistent with the classical
		  linear theory of orthotropic elasticity. Possible sets of
		  independent tests required for full material
		  characterization are then enumerated.}
}

###Article{	  holzapfel-odgen-09,
  Volume	= {14},
  Title		= {On planar biaxial tests for anisotropic nonlinearly
		  elastic solids: a continuum mechanical framework },
  Author	= {Holzapfel, G.A. and Ogden, R.W.},
  Year		= {2009},
  Pages		= {474--489},
  Journal	= {Mathematics and Mechanics of Solids},
  URL		= {http://eprints.gla.ac.uk/25269/},
  Abstract	= {The mechanical testing of anisotropic nonlinearly elastic
		  solids is a topic of considerable and increasing interest.
		  The results of such testing are important, in particular,
		  for the characterization of the material properties and the
		  development of constitutive laws that can be used for
		  predictive purposes. However, the literature on this topic
		  in the context of soft tissue biomechanics, in particular,
		  includes some papers that are misleading since they contain
		  errors and false statements. Claims that planar biaxial
		  testing can fully characterize the three-dimensional
		  anisotropic elastic properties of soft tissues are
		  incorrect. There is therefore a need to clarify the extent
		  to which biaxial testing can be used for determining the
		  elastic properties of these materials. In this paper this
		  is explained on the basis of the equations of finite
		  deformation transversely isotropic elasticity, and general
		  planar anisotropic elasticity. It is shown that it is
		  theoretically impossible to fully characterize the
		  properties of anisotropic elastic materials using such
		  tests unless some assumption is made that enables a
		  suitable subclass of models to be preselected. Moreover, it
		  is shown that certain assumptions underlying the analysis
		  of planar biaxial tests are inconsistent with the classical
		  linear theory of orthotropic elasticity. Possible sets of
		  independent tests required for full material
		  characterization are then enumerated.}
}

@Article{	  holzapfel-odgen-review2010,
  Author	= {Holzapfel, G.A. and Ogden, R.W.},
  Title		= {Constitutive modelling of arteries},
  Year		= {2010},
  DOI		= {10.1098/rspa.2010.0058},
  Journal	= {Proceedings of the Royal Society A: Mathematical, Physical
		  and Engineering Science}
}

###Article{	  holzapfel-odgen-review2010,
  Author	= {Holzapfel, G.A. and Ogden, R.W.},
  Title		= {Constitutive modelling of arteries},
  Year		= {2010},
  DOI		= {10.1098/rspa.2010.0058},
  URL		= {http://rspa.royalsocietypublishing.org/content/early/2010/03/26/rspa.2010.0058.abstract},
  EPrint	= {http://rspa.royalsocietypublishing.org/content/early/2010/03/26/rspa.2010.0058.full.pdf+html},
  Journal	= {Proceedings of the Royal Society A: Mathematical, Physical
		  and Engineering Science}
}

@Article{	  holzapfel2000arteries,
  Title		= {A new constitutive framework for arterial wall mechanics
		  and a comparative study of material models},
  Author	= {Holzapfel, Gerhard A and Gasser, Thomas C and Ogden, Ray
		  W},
  Journal	= {Journal of elasticity and the physical science of solids},
  Volume	= {61},
  Number	= {1-3},
  Pages		= {1--48},
  Year		= {2000},
  Publisher	= {Springer}
}

@Book{		  holzapfel2001,
  Author	= {Holzapfel, Gerhard A.},
  Publisher	= {John Wiley \& Sons Ltd.},
  Title		= {{Nonlinear Solid Mechanics: A Continuum Approach for
		  Engineering}},
  Year		= {2000}
}

@Article{	  holzapfel2009ptrs,
  Title		= {Constitutive modelling of passive myocardium: a
		  structurally based framework for material
		  characterization},
  Author	= {Holzapfel, Gerhard A and Ogden, Ray W},
  Journal	= {Philosophical Transactions of the Royal Society of London
		  A: Mathematical, Physical and Engineering Sciences},
  Volume	= {367},
  Number	= {1902},
  Pages		= {3445--3475},
  Year		= {2009},
  Publisher	= {The Royal Society}
}

@Article{	  holzapfel2009royal,
  Title		= {Constitutive modelling of passive myocardium: a
		  structurally based framework for material
		  characterization},
  Author	= {Holzapfel, Gerhard A and Ogden, Ray W},
  Journal	= {Philosophical Transactions of the Royal Society A:
		  Mathematical, Physical and Engineering Sciences},
  Year		= {2009},
  Number	= {1902},
  Pages		= {3445--3475},
  Volume	= {367},
  File		= {:holzapfel09.pdf:PDF},
  Publisher	= {The Royal Society},
  timestamp	= {2014/12/08}
}

@Article{	  holzapfel_gasser_ogden_2000,
  Title		= {A New Constitutive Framework for Arterial Wall Mechanics
		  and a Comparative Study of Material Models},
  Volume	= {61},
  Publisher	= {Springer},
  Author	= {Holzapfel, G. and Gasser, T. and Ogden, R.},
  Year		= {2000},
  Pages		= {1--48}
}

@Article{	  hom_velocity-encoded_2008,
  Title		= {Velocity-Encoded Cine {{MR}} Imaging in Aortic
		  Coarctation: Functional Assessment of Hemodynamic Events},
  Volume	= {28},
  ShortTitle	= {Velocity-Encoded Cine {{MR}} Imaging in Aortic
		  Coarctation},
  Number	= {2},
  JournalTitle	= {Radiographics},
  Year		= {2008},
  Pages		= {407--416},
  Author	= {Hom, Jeffrey J. and Ordovas, Karen and Reddy, Gautham P.}
}

@Article{	  hope_comparison_2007,
  Title		= {Comparison of Flow Patterns in Ascending Aortic Aneurysms
		  and Volunteers Using Four-Dimensional Magnetic Resonance
		  Velocity Mapping},
  Volume	= {26},
  Number	= {6},
  JournalTitle	= {Journal of Magnetic Resonance Imaging: An Official Journal
		  of the International Society for Magnetic Resonance in
		  Medicine},
  Year		= {2007},
  Pages		= {1471--1479},
  Author	= {Hope, Thomas A. and Markl, Michael and WigstrÃ¶m, Lars and
		  Alley, Marcus T. and Miller, D. Craig and Herfkens, Robert
		  J.}
}

@Book{		  hornung-97,
  Address	= {New York},
  Editor	= {Hornung, Ulrich},
  ISBN		= {0-387-94786-8},
  Pages		= {xvi+275},
  Publisher	= {Springer-Verlag},
  Title		= {Homogenization and porous media},
  Year		= {1997}
}

###Book{	  hornung-97,
  Address	= {New York},
  Editor	= {Hornung, Ulrich},
  ISBN		= {0-387-94786-8},
  Pages		= {xvi+275},
  Publisher	= {Springer-Verlag},
  Title		= {Homogenization and porous media},
  Year		= {1997}
}

@Article{	  horny-etal-07,
  Author	= {Horn\'y, L. and Zitn\'y, R. and Chlup, H. and Mackov\'a, H.},
  Title		= {Identification of the material parameters of an aortic
		  wall},
  Journal	= {Bulletin of Applied Mechanics},
  Volume	= {2},
  Number	= {8},
  Year		= {2007},
  Keywords	= {Aorta; constitutive modeling; Fung-type model; inflation
		  test; hyperelasticity; Neo-Hookean model},
  Abstract	= {The passive mechanical response of arterial walls
		  continues to be a topic of great interest. Inflation tests
		  with human thoracic aorta specimens were performed with the
		  aim of fitting a material model. The experimental data was
		  used in a nonlinear regression analysis to identify the
		  material parameters. The aortic tissue was assumed to be an
		  incompressible hyperelastic material. We used a
		  5âparameter strain energy density function based on a
		  combination of an isotropic NeoâHookean expression and a
		  Fungâtype orthotropic expression. The computational model
		  for identifying the material parameters was based on the
		  boundary value problem of an inflated thickâwalled tube
		  with axial preâstrains. The circumferential residual
		  strains were included. The internal structure of the
		  arterial walls was not considered. The fitted material
		  models correspond very well with the experimental data.
		  Significant stiffening under large strains was observed. It
		  was concluded that the combined model of the strain energy
		  density function is suitable for the aortic mechanical
		  response description. The material parameters satisfy the
		  convexity conditions.},
  ISSN		= {1801-1217}
}

###Article{	  horny-etal-07,
  Author	= {Horn\'y, L. and Zitn\'y, R. and Chlup, H. and Mackov\'a, H.},
  Title		= {Identification of the material parameters of an aortic
		  wall},
  Journal	= {Bulletin of Applied Mechanics},
  Volume	= {2},
  Number	= {8},
  Year		= {2007},
  Keywords	= {Aorta; constitutive modeling; Fung-type model; inflation
		  test; hyperelasticity; Neo-Hookean model},
  Abstract	= {The passive mechanical response of arterial walls
		  continues to be a topic of great interest. Inflation tests
		  with human thoracic aorta specimens were performed with the
		  aim of fitting a material model. The experimental data was
		  used in a nonlinear regression analysis to identify the
		  material parameters. The aortic tissue was assumed to be an
		  incompressible hyperelastic material. We used a
		  5âparameter strain energy density function based on a
		  combination of an isotropic NeoâHookean expression and a
		  Fungâtype orthotropic expression. The computational model
		  for identifying the material parameters was based on the
		  boundary value problem of an inflated thickâwalled tube
		  with axial preâstrains. The circumferential residual
		  strains were included. The internal structure of the
		  arterial walls was not considered. The fitted material
		  models correspond very well with the experimental data.
		  Significant stiffening under large strains was observed. It
		  was concluded that the combined model of the strain energy
		  density function is suitable for the aortic mechanical
		  response description. The material parameters satisfy the
		  convexity conditions.},
  ISSN		= {1801-1217},
  URL		= {http://bulletin-am.cz/index.php/vam/article/view/43/59}
}

@Article{	  hoskins_accuracy_1996,
  Title		= {Accuracy of Maximum Velocity Estimates Made Using
		  {{Doppler}} Ultrasound Systems},
  Author	= {Hoskins, P. R.},
  Year		= {1996},
  Volume	= {69},
  Pages		= {172--177},
  Journal	= {The British journal of radiology},
  Number	= {818}
}

@Article{	  hoteit-pham-blum-02,
  Author	= {Hoteit, I. and Pham, D.-T. and Blum, J.},
  date-added	= {2009-03-10 11:40:58 -0700},
  date-modified	= {2009-03-10 12:02:17 -0700},
  DOI		= {DOI: 10.1016/S0924-7963(02)00129-X},
  ISSN		= {0924-7963},
  Journal	= {Journal of Marine Systems},
  Number	= {1--2},
  Pages		= {101--127},
  Title		= {A simplified reduced order {K}alman filtering and
		  application to altimetric data assimilation in {T}ropical
		  {P}acific},
  Volume	= {36},
  Year		= {2002}
}

###Article{	  hoteit-pham-blum-02,
  Author	= {Hoteit, I. and Pham, D.-T. and Blum, J.},
  date-added	= {2009-03-10 11:40:58 -0700},
  date-modified	= {2009-03-10 12:02:17 -0700},
  DOI		= {DOI: 10.1016/S0924-7963(02)00129-X},
  ISSN		= {0924-7963},
  Journal	= {Journal of Marine Systems},
  Number	= {1--2},
  Pages		= {101--127},
  Title		= {A simplified reduced order {K}alman filtering and
		  application to altimetric data assimilation in {T}ropical
		  {P}acific},
  Volume	= {36},
  Year		= {2002},
  bdsk-url-1	= {http://www.sciencedirect.com/science/article/B6VF5-45YG6V2-1/2/36766af659cf7e84807f5e812a2bc4fb},
  bdsk-url-2	= {http://dx.doi.org/10.1016/S0924-7963(02)00129-X}
}

@Article{	  hou-meir-95,
  Annote	= {mhd, optimal control},
  Author	= {Hou, L. S. and Meir, A. J.},
  code		= {mhd7},
  Journal	= {App. Math. Optim.},
  Pages		= {143-162},
  Title		= {Boundary optimal control of {MHD} flows},
  Volume	= {32},
  Year		= {1995}
}

###Article{	  hou-meir-95,
  Annote	= {mhd, optimal control},
  Author	= {Hou, L. S. and Meir, A. J.},
  code		= {mhd7},
  Journal	= {App. Math. Optim.},
  Pages		= {143-162},
  Title		= {Boundary optimal control of {MHD} flows},
  Volume	= {32},
  Year		= {1995}
}

@Article{	  hou-teng-zhang-96,
  Author	= {Hou, T.Y and Teng, Z.-H. and Zhang, P.},
  Journal	= {Comm. Part. Diff. Eq.},
  Number	= {9-10},
  Pages		= {1551-1585},
  Title		= {Well-posedness of linearized motion for {3-D} water waves
		  far from equilibrium},
  Volume	= {21},
  Year		= {1996}
}

###Article{	  hou-teng-zhang-96,
  Author	= {Hou, T.Y and Teng, Z.-H. and Zhang, P.},
  Journal	= {Comm. Part. Diff. Eq.},
  Number	= {9-10},
  Pages		= {1551-1585},
  Title		= {Well-posedness of linearized motion for {3-D} water waves
		  far from equilibrium},
  Volume	= {21},
  Year		= {1996}
}

@Article{	  howells-74,
  Annote	= {darcy, brinkman},
  Author	= {Howells, I.D.},
  code		= {cel15},
  Journal	= {J. Fluid Mech. },
  Pages		= {449-475},
  Title		= {Drag due to the motion of a Newtonian fluid through a
		  sparse random array of small fixed rigid objects},
  Volume	= {64},
  Year		= {1974}
}

###Article{	  howells-74,
  Annote	= {darcy, brinkman},
  Author	= {Howells, I.D.},
  code		= {cel15},
  Journal	= {J. Fluid Mech. },
  Pages		= {449-475},
  Title		= {Drag due to the motion of a Newtonian fluid through a
		  sparse random array of small fixed rigid objects},
  Volume	= {64},
  Year		= {1974}
}

@Article{	  howells-98,
  Annote	= {darcy, fibrous},
  Author	= {Howells, I. D.},
  code		= {por4},
  Journal	= {J. Fluid Mech.},
  Pages		= {163-192},
  Title		= {Drag on fixed beds of fibres in slow flow},
  Volume	= {355},
  Year		= {1998}
}

###Article{	  howells-98,
  Annote	= {darcy, fibrous},
  Author	= {Howells, I. D.},
  code		= {por4},
  Journal	= {J. Fluid Mech.},
  Pages		= {163-192},
  Title		= {Drag on fixed beds of fibres in slow flow},
  Volume	= {355},
  Year		= {1998}
}

@Article{	  hsu1998,
  Author	= {Hsu, E. W. and Muzikant, A. L. and Matulevicius, S. A. and
		  Penland, R. C. and Henriquez, C. S.},
  Title		= {Magnetic resonance myocardial fiber-orientation mapping
		  with direct histological correlation},
  Volume	= {274},
  Number	= {5},
  Pages		= {H1627-H1634},
  Year		= {1998},
  Abstract	= {Functional properties of the myocardium are mediated by
		  the tissue structure. Consequently, proper physiological
		  studies and modeling necessitate a precise knowledge of the
		  fiber orientation. Magnetic resonance (MR) diffusion tensor
		  imaging techniques have been used as a nondestructive means
		  to characterize tissue fiber structure; however, the
		  descriptions so far have been mostly qualitative. This
		  study presents a direct, quantitative comparison of
		  high-resolution MR fiber mapping and histology measurements
		  in a block of excised canine myocardium. Results show an
		  excellent correspondence of the measured fiber angles not
		  only on a point-by-point basis (average difference of
		  â2.30 Â± 0.98Â°, n = 239) but also in the transmural
		  rotation of the helix angles (average correlation
		  coefficient of 0.942 Â± 0.008 with average false-positive
		  probability of 0.004 Â± 0.001, n = 24). These data strongly
		  support the hypothesis that the eigenvector of the largest
		  MR diffusion tensor eigenvalue coincides with the
		  orientation of the local myocardial fibers and underscore
		  the potential of MR imaging as a noninvasive,
		  three-dimensional modality to characterize tissue fiber
		  architecture.},
  Journal	= {American Journal of Physiology - Heart and Circulatory
		  Physiology}
}

@Article{	  hu_efficient_2013,
  Title		= {Efficient preloading of the ventricles by a properly timed
		  atrial contraction underlies stroke work improvement in the
		  acute response to cardiac resynchronization therapy},
  Author	= {Hu, Y. and Gurev, V. and Constantino, J. and Trayanova,
		  N.},
  Journal	= {Heart Rhythm},
  Year		= {2013},
  Month		= dec,
  Number	= {12},
  Pages		= {1800--1806},
  Volume	= {10},
  DOI		= {10.1016/j.hrthm.2013.08.003},
  File		= {Unanz.pdf:/home/hoermann/.zotero/zotero/krpbc0h6.default/zotero/storage/AUUAPKQ7/Unanz.pdf:application/pdf},
  ISSN		= {15475271},
  Language	= {en},
  URL		= {http://linkinghub.elsevier.com/retrieve/pii/S1547527113008412},
  URLDate	= {2014-11-28}
}

@Article{	  hu_optimizing_2014,
  Title		= {Optimizing cardiac resynchronization therapy to minimize
		  {ATP} consumption heterogeneity throughout the left
		  ventricle: A simulation analysis using a canine heart
		  failure model},
  Author	= {Hu, Y. and Gurev, V. and Constantino, J. and Trayanova,
		  N.},
  Journal	= {Heart Rhythm},
  Year		= {2014},
  Month		= jun,
  Number	= {6},
  Pages		= {1063--1069},
  Volume	= {11},
  DOI		= {10.1016/j.hrthm.2014.03.021},
  File		= {Zwoa.pdf:/home/hoermann/.zotero/zotero/krpbc0h6.default/zotero/storage/9CJ7B9CK/Zwoa.pdf:application/pdf},
  ISSN		= {15475271},
  Language	= {en},
  ShortTitle	= {Optimizing cardiac resynchronization therapy to minimize
		  {ATP} consumption heterogeneity throughout the left
		  ventricle},
  URL		= {http://linkinghub.elsevier.com/retrieve/pii/S1547527114003026},
  URLDate	= {2014-11-28}
}

@Article{	  huang-hellums-93,
  Annote	= {blood, aggregation, platelet},
  Author	= {Huang, P.Y. and Hellums, J.D.},
  code		= {cel20},
  Journal	= {Biophys. J.},
  Pages		= {334-343},
  Title		= {Aggregation and disaggregation kinetics of human blood
		  platelets: {Part I.} Development and validation of a
		  population balance method},
  Volume	= {65},
  Year		= {1993}
}

###Article{	  huang-hellums-93,
  Annote	= {blood, aggregation, platelet},
  Author	= {Huang, P.Y. and Hellums, J.D.},
  code		= {cel20},
  Journal	= {Biophys. J.},
  Pages		= {334-343},
  Title		= {Aggregation and disaggregation kinetics of human blood
		  platelets: {Part I.} Development and validation of a
		  population balance method},
  Volume	= {65},
  Year		= {1993}
}

@Article{	  huang-hellums-93b,
  Annote	= {blood, aggregation, platelet},
  Author	= {Huang, P.Y. and Hellums, J.D.},
  Journal	= {Biophys. J.},
  Pages		= {344-353},
  Title		= {Aggregation and disaggregation kinetics of human blood
		  platelets: {Part II.} Shear-induced platelet aggregation},
  Volume	= {65},
  Year		= {1993}
}

###Article{	  huang-hellums-93b,
  Annote	= {blood, aggregation, platelet},
  Author	= {Huang, P.Y. and Hellums, J.D.},
  Journal	= {Biophys. J.},
  Pages		= {344-353},
  Title		= {Aggregation and disaggregation kinetics of human blood
		  platelets: {Part II.} Shear-induced platelet aggregation},
  Volume	= {65},
  Year		= {1993}
}

@Article{	  huang-hellums-93c,
  Annote	= {blood, aggregation, platelet},
  Author	= {Huang, P.Y. and Hellums, J.D.},
  Journal	= {Biophys. J.},
  Pages		= {354-361},
  Title		= {Aggregation and disaggregation kinetics of human blood
		  platelets: {Part III.} the disaggregation under shear
		  stress of platelet aggregates},
  Volume	= {65},
  Year		= {1993}
}

###Article{	  huang-hellums-93c,
  Annote	= {blood, aggregation, platelet},
  Author	= {Huang, P.Y. and Hellums, J.D.},
  Journal	= {Biophys. J.},
  Pages		= {354-361},
  Title		= {Aggregation and disaggregation kinetics of human blood
		  platelets: {Part III.} the disaggregation under shear
		  stress of platelet aggregates},
  Volume	= {65},
  Year		= {1993}
}

@Article{	  huerta-liu-88,
  Author	= {Huerta, A. and Liu, W. K.},
  code		= {mob1},
  Journal	= {Comp. Meth. Appl. Mech. Engng.},
  Pages		= {277-324},
  Title		= {Viscous flow with large surface motion},
  Volume	= {69},
  Year		= {1988}
}

###Article{	  huerta-liu-88,
  Author	= {Huerta, A. and Liu, W. K.},
  code		= {mob1},
  Journal	= {Comp. Meth. Appl. Mech. Engng.},
  Pages		= {277-324},
  Title		= {Viscous flow with large surface motion},
  Volume	= {69},
  Year		= {1988}
}

@Article{	  hughes-franca-balestra-86,
  Author	= {Hughes, T.J.R. and Franca, L.P. and Balestra, M.},
  Journal	= {Comp. Meth. App. Mech. Eng.},
  Pages		= {85-99},
  Title		= {A new finite element formulation for computational fluid
		  dynamics~: V. Circumventing the {Babuska-Brezzi}
		  condition~: a stable {Petrov-Galerkin} formulation of the
		  {Stokes} problem accommodating equal-order interpolations},
  Volume	= {59},
  Year		= {1986}
}

###Article{	  hughes-franca-balestra-86,
  Author	= {Hughes, T.J.R. and Franca, L.P. and Balestra, M.},
  Journal	= {Comp. Meth. App. Mech. Eng.},
  Pages		= {85-99},
  Title		= {A new finite element formulation for computational fluid
		  dynamics~: V. Circumventing the {Babuska-Brezzi}
		  condition~: a stable {Petrov-Galerkin} formulation of the
		  {Stokes} problem accommodating equal-order interpolations},
  Volume	= {59},
  Year		= {1986}
}

@Article{	  hughes-mallet-mizukami-86,
  Author	= {Hughes, T.J.R. and Mallet, M. and Mizukami, A.},
  Journal	= {Comp. Meth. App. Mech. Eng.},
  Pages		= {341-355},
  Title		= {A new finite element formulation for computational fluid
		  dynamics: {II.} Beyond {SUPG}},
  Volume	= {54},
  Year		= {1986}
}

###Article{	  hughes-mallet-mizukami-86,
  Author	= {Hughes, T.J.R. and Mallet, M. and Mizukami, A.},
  Journal	= {Comp. Meth. App. Mech. Eng.},
  Pages		= {341-355},
  Title		= {A new finite element formulation for computational fluid
		  dynamics: {II.} Beyond {SUPG}},
  Volume	= {54},
  Year		= {1986}
}

@Book{		  hughes-young-66,
  Author	= {Hughes, W.F. and Young, F.J.},
  Publisher	= {Wiley},
  Title		= {The electromagnetodynamics of fluids},
  Year		= {1966}
}

###Book{	  hughes-young-66,
  Author	= {Hughes, W.F. and Young, F.J.},
  Publisher	= {Wiley},
  Title		= {The electromagnetodynamics of fluids},
  Year		= {1966}
}

@Book{		  humphrey-02,
  Title		= {Cardiovascular solid mechanics: cells, tissues, and
		  organs},
  Author	= {Humphrey, J.D.},
  ISBN		= {9780387951683},
  lccn		= {00069244},
  Year		= {2002},
  Publisher	= {Springer}
}

###Book{	  humphrey-02,
  Title		= {Cardiovascular solid mechanics: cells, tissues, and
		  organs},
  Author	= {Humphrey, J.D.},
  ISBN		= {9780387951683},
  lccn		= {00069244},
  Year		= {2002},
  Publisher	= {Springer}
}

@Article{	  humphrey2002mmmas,
  Title		= {A constrained mixture model for growth and remodeling of
		  soft tissues},
  Author	= {Humphrey, JD and Rajagopal, KR},
  Journal	= {Mathematical models and methods in applied sciences},
  Year		= {2002},
  Number	= {03},
  Pages		= {407--430},
  Volume	= {12},
  File		= {:humphrey02.pdf:PDF},
  Publisher	= {World Scientific},
  timestamp	= {2014/12/02}
}

@Article{	  humphrey2003prsl,
  Title		= {Review Paper: Continuum biomechanics of soft biological
		  tissues},
  Author	= {Humphrey, JD},
  Journal	= {Proceedings of the Royal Society of London. Series A:
		  Mathematical, Physical and Engineering Sciences},
  Year		= {2003},
  Number	= {2029},
  Pages		= {3--46},
  Volume	= {459},
  File		= {:humphrey03.pdf:PDF},
  Keywords	= {soft tissues},
  Publisher	= {The Royal Society},
  timestamp	= {2014/12/02}
}

@Article{	  hunt2005circ,
  Title		= {ACC/AHA 2005 Guideline Update for the Diagnosis and
		  Management of Chronic Heart Failure in the Adult: A Report
		  of the American College of Cardiology/American Heart
		  Association Task Force on Practice Guidelines (Writing
		  Committee to Update the 2001 Guidelines for the Evaluation
		  and Management of Heart Failure): Developed in
		  Collaboration With the American College of Chest Physicians
		  and the International Society for Heart and Lung
		  Transplantation: Endorsed by the Heart Rhythm Society},
  Author	= {Hunt, Sharon Ann and Abraham, William T. and Chin,
		  Marshall H. and Feldman, Arthur M. and Francis, Gary S. and
		  Ganiats, Theodore G. and Jessup, Mariell and Konstam,
		  Marvin A. and Mancini, Donna M. and Michl, Keith and Oates,
		  John A. and Rahko, Peter S. and Silver, Marc A. and
		  Stevenson, Lynne Warner and Yancy, Clyde W. and Antman,
		  Elliott M. and Smith, Sidney C. and Adams, Cynthia D. and
		  Anderson, Jeffrey L. and Faxon, David P. and Fuster,
		  Valentin and Halperin, Jonathan L. and Hiratzka, Loren F.
		  and Hunt, Sharon Ann and Jacobs, Alice K. and Nishimura,
		  Rick and Ornato, Joseph P. and Page, Richard L. and Riegel,
		  Barbara},
  Journal	= {Circulation},
  Year		= {2005},
  Number	= {12},
  Pages		= {e154-e235},
  Volume	= {112},
  DOI		= {10.1161/CIRCULATIONAHA.105.167586},
  EPrint	= {http://circ.ahajournals.org/content/112/12/e154.full.pdf+html},
  File		= {hunt05.pdf:hunt05.pdf:PDF},
  timestamp	= {2015/09/13},
  URL		= {http://circ.ahajournals.org/content/112/12/e154.short}
}

@Article{	  hutchins-71,
  Author	= "Hutchins, G.",
  Title		= "{Coarctation of the Aorta Explained as a Branch-Point of
		  the Ductus Arteriosus}",
  Journal	= "American Journal of Pathology",
  Volume	= "63",
  Pages		= "203-214",
  Number	= "2",
  Year		= "1971"
}

###Article{	  hutchins-71,
  Author	= "Hutchins, G.",
  Title		= "{Coarctation of the Aorta Explained as a Branch-Point of
		  the Ductus Arteriosus}",
  Journal	= "American Journal of Pathology",
  Volume	= "63",
  Pages		= "203-214",
  Number	= "2",
  Year		= "1971"
}

@Article{	  hutchins1978ajc,
  Title		= {Infarct expansion versus extension: Two different
		  complications of acute myocardial infarction },
  Author	= {Grover M. Hutchins and Bernadine H. Bulkley},
  Journal	= {The American Journal of Cardiology },
  Year		= {1978},
  Number	= {7},
  Pages		= {1127 - 1132},
  Volume	= {41},
  Abstract	= {Precordial S-T segment mapping studies have suggested that
		  extension of acute transmural myocardial infarcts occurs in
		  up to 80 percent of patients within 6 days. To determine
		  the morphologic nature of extension 76 consecutive acute
		  myocardial infarcts aged 30 days or less were studied. All
		  infarcts had been clinically diagnosed and proved at
		  autopsy. Extension (histologically more recent foci of
		  contraction band necrosis around an infarct) was found in
		  only 13 infarcts (17 percent). However, ?expansion? (acute
		  dilatation and thinning of the area of infarction not
		  explained by additional myocardial necrosis) was present in
		  45 infarcts (59 percent). Severe expansion did not develop
		  until 5 days after infarction and was greater with
		  transmural and first infarcts. Clinically diagnosed
		  extension manifested by new pain, S-T segment elevation,
		  rise in serum creatine kinase level and increased
		  congestive heart failure occurred in 14 of the 76 patients
		  (18 percent). At autopsy these clinical extensions were
		  associated with expansion alone in three patients, with
		  extension alone in two and with both in nine. The study
		  shows that expansion is a common complication of acute
		  myocardial infarction that can worsen cardiac function
		  through left ventricular dilatation and can mimic or
		  possibly cause infarct extension. In contrast, extension
		  with additional myocardial necrosis is an infrequent
		  accompaniment of acute myocardial infarction and is usually
		  a result of hypoperfusion. },
  DOI		= {http://dx.doi.org/10.1016/0002-9149(78)90869-X},
  File		= {hutchins78.pdf:hutchins78.pdf:PDF},
  ISSN		= {0002-9149},
  timestamp	= {2015/09/14},
  URL		= {http://www.sciencedirect.com/science/article/pii/000291497890869X}
}

@Article{	  huyghe-arts-van-campen-92,
  Author	= {Huyghe, J.M. and Arts, T. and van Campen, D.H.},
  Journal	= {Am. J. Physiol.},
  Title		= {Porous medium finite element model of the beating left
		  ventricle},
  Volume	= {262},
  Year		= {1992}
}

###Article{	  huyghe-arts-van-campen-92,
  Author	= {Huyghe, J.M. and Arts, T. and van Campen, D.H.},
  Journal	= {Am. J. Physiol.},
  Title		= {Porous medium finite element model of the beating left
		  ventricle},
  Volume	= {262},
  Year		= {1992}
}

@Article{	  hyriacou1999ieemedim,
  Title		= {Nonlinear elastic registration of brain images with tumor
		  pathology using a biomechanical model [MRI]},
  Author	= {Kyriacou, Stelios K and Davatzikos, Christos and Zinreich,
		  S James and Bryan, R Nick},
  Journal	= {Medical Imaging, IEEE Transactions on},
  Year		= {1999},
  Number	= {7},
  Pages		= {580--592},
  Volume	= {18},
  File		= {kyriacou99.pdf:kyriacou99.pdf:PDF},
  Keywords	= {tumor},
  Publisher	= {IEEE},
  timestamp	= {2015/03/27}
}

@Article{	  ii_physically_2018,
  langid	= {english},
  Title		= {Physically Consistent Data Assimilation Method Based on
		  Feedback Control for Patient-Specific Blood Flow Analysis},
  Volume	= {34},
  ISSN		= {2040-7947},
  URL		= {https://onlinelibrary.wiley.com/doi/abs/10.1002/cnm.2910},
  DOI		= {10.1002/cnm.2910},
  Abstract	= {This paper presents a novel data assimilation method for
		  patient-specific blood flow analysis based on feedback
		  control theory called the physically consistent feedback
		  control-based data assimilation (PFC-DA) method. In the
		  PFC-DA method, the signal, which is the residual error term
		  of the velocity when comparing the numerical and reference
		  measurement data, is cast as a source term in a Poisson
		  equation for the scalar potential field that induces flow
		  in a closed system. The pressure values at the inlet and
		  outlet boundaries are recursively calculated by this scalar
		  potential field. Hence, the flow field is physically
		  consistent because it is driven by the calculated inlet and
		  outlet pressures, without any artificial body forces. As
		  compared with existing variational approaches, although
		  this PFC-DA method does not guarantee the optimal solution,
		  only one additional Poisson equation for the scalar
		  potential field is required, providing a remarkable
		  improvement for such a small additional computational cost
		  at every iteration. Through numerical examples for 2D and
		  3D exact flow fields, with both noise-free and noisy
		  reference data as well as a blood flow analysis on a
		  cerebral aneurysm using actual patient data, the robustness
		  and accuracy of this approach is shown. Moreover, the
		  feasibility of a patient-specific practical blood flow
		  analysis is demonstrated.},
  Number	= {1},
  JournalTitle	= {International Journal for Numerical Methods in Biomedical
		  Engineering},
  URLDate	= {2019-02-28},
  Year		= {2018},
  Pages		= {e2910},
  Author	= {Ii, Satoshi and Adib, Mohd Azrul Hisham Mohd and Watanabe,
		  Yoshiyuki and Wada, Shigeo}
}

@Article{	  imagawa-hayase-08-eigenvalue,
  Title		= {Eigenvalue Analysis for Error Dynamics of Measurement
		  Integrated Simulation to Reproduce Real Flows},
  Author	= {Imagawa, K. and Hayase, T.},
  Journal	= {Bulletin of the American Physical Society},
  Volume	= {53},
  Year		= {2008},
  Publisher	= {APS}
}

###Article{	  imagawa-hayase-08-eigenvalue,
  Title		= {Eigenvalue Analysis for Error Dynamics of Measurement
		  Integrated Simulation to Reproduce Real Flows},
  Author	= {Imagawa, K. and Hayase, T.},
  Journal	= {Bulletin of the American Physical Society},
  Volume	= {53},
  Year		= {2008},
  Publisher	= {APS}
}

@InCollection{	  imperiale2013lncs,
  Title		= {Improving efficiency of data assimilation procedure for a
		  biomechanical heart model by representing surfaces as
		  currents},
  Author	= {Imperiale, Alexandre and Routier, Alexandre and Durrleman,
		  Stanley and Moireau, Philippe},
  BookTitle	= {Functional Imaging and Modeling of the Heart},
  Pages		= {342--351},
  Year		= {2013},
  Publisher	= {Springer}
}

@Unpublished{	  incidence,
  Author	= {http://www.nlm.nih.gov/medlineplus},
  Title		= {A service of the {U.S. National Library of medicine and
		  the National Institutes of Health and the National
		  Institutes of Health.}}
}

###Unpublished{	  incidence,
  Author	= {http://www.nlm.nih.gov/medlineplus},
  Title		= {A service of the {U.S. National Library of medicine and
		  the National Institutes of Health and the National
		  Institutes of Health.}}
}

@Article{	  ingkanisorn2004jacc,
  Title		= {Gadolinium delayed enhancement cardiovascular magnetic
		  resonance correlates with clinical measures of myocardial
		  infarction.},
  Author	= {Ingkanisorn, W Patricia and Rhoads, Kenneth L. and
		  Aletras, Anthony H. and Kellman, Peter and Arai, Andrew
		  E.},
  Journal	= {J Am Coll Cardiol},
  Year		= {2004},
  Month		= {Jun},
  Number	= {12},
  Pages		= {2253--2259},
  Volume	= {43},
  Abstract	= {The current study tested the hypothesis that gadolinium
		  delayed enhancement assessment of infarct size correlates
		  with clinical indices of myocardial infarction (MI) in
		  humans. Acute infarct mass by cardiac magnetic resonance
		  (CMR) was compared with peak troponin I, acute and chronic
		  left ventricular (LV) systolic function, and chronic
		  infarct mass in patients imaged after recent acute
		  MI.Cardiac magnetic resonance accurately determines
		  myocardial viability in patients with chronic ischemic
		  heart disease but is not well validated for recent
		  MI.Patients with first acute MI (n = 33) or chronic MI (n =
		  10) underwent cine CMR followed by gadolinium delayed
		  enhancement imaging. A follow-up CMR scan was performed on
		  20 of the 33 acute MI patients and all of the chronic MI
		  patients.In patients with acute percutaneous coronary
		  intervention, acute MI mass correlated with peak troponin I
		  (r = 0.83, p < 0.001, n = 23). In the 20 acute infarct
		  patients with follow-up CMR scans, the acute infarct size
		  correlated well with the follow-up LV ejection fraction (r
		  = 0.86, p < 0.001). The transmural extent of delayed
		  enhancement imaged acutely correlated inversely with wall
		  thickening measured acutely (p < 0.001) and at follow-up (p
		  < 0.001). Although chronic infarct size was reproducible
		  (11 +/- 4\% vs. 12 +/- 7\%, p = NS), acute infarct size
		  decreased from 16 +/- 12\% to 11 +/- 9\% (p < 0.003).In
		  humans imaged shortly after acute MI, gadolinium delayed
		  enhancement acute CMR infarct size correlates with acute
		  and chronic indices of infarct size but will appear to
		  diminish in size on follow-up.},
  DOI		= {10.1016/j.jacc.2004.02.046},
  Institution	= {National Heart, Lung, and Blood Institute, National
		  Institutes of Health, Department of Health and Human
		  Services, Bethesda, Maryland 20892-1061, USA.},
  Keywords	= {Aged; Biological Markers, blood; Contrast Media; Female;
		  Follow-Up Studies; Gadolinium DTPA, diagnostic use; Humans;
		  Magnetic Resonance Imaging, Cine; Male; Middle Aged;
		  Myocardial Contraction, physiology; Myocardial Infarction,
		  blood/physiopathology/radiography; Predictive Value of
		  Tests; Radiographic Image Enhancement; Reproducibility of
		  Results; Statistics as Topic; Stroke Volume, physiology;
		  Troponin I, blood},
  Language	= {eng},
  medline-pst	= {ppublish},
  owner		= {stoeckc},
  pii		= {S0735109704005923},
  pmid		= {15193689},
  timestamp	= {2015.07.24},
  URL		= {http://dx.doi.org/10.1016/j.jacc.2004.02.046}
}

@Article{	  irons-tuck-69,
  Author	= {Irons, B. and Tuck, R.C.},
  Journal	= {Int. J. Num. Meth. Engng.},
  Pages		= {275-277},
  Title		= {A version of the Aitken accelerator for computer
		  implementation},
  Volume	= {1},
  Year		= {1969}
}

###Article{	  irons-tuck-69,
  Author	= {Irons, B. and Tuck, R.C.},
  Journal	= {Int. J. Num. Meth. Engng.},
  Pages		= {275-277},
  Title		= {A version of the Aitken accelerator for computer
		  implementation},
  Volume	= {1},
  Year		= {1969}
}

@InBook{	  ismail2013,
  Author	= "Ismail, Mahmoud and Gee, Michael W. and Wall, Wolfgang A.",
  Chapter	= "CFD Challenge: Hemodynamic Simulation of a
		  Patient-Specific Aortic Coarctation Model with
		  Adjoint-Based Calibrated Windkessel Elements",
  Title		= "STACOM 2012, Nice, France.",
  Year		= "2013",
  Publisher	= "Springer Berlin Heidelberg",
  Address	= "Berlin, Heidelberg",
  Pages		= "44--52",
  ISBN		= "978-3-642-36961-2",
  DOI		= "10.1007/978-3-642-36961-2_6",
  URL		= "http://dx.doi.org/10.1007/978-3-642-36961-2_6"
}

###InBook{	  ismail2013,
  Author	= "Ismail, Mahmoud and Gee, Michael W. and Wall, Wolfgang A.",
  Chapter	= "CFD Challenge: Hemodynamic Simulation of a
		  Patient-Specific Aortic Coarctation Model with
		  Adjoint-Based Calibrated Windkessel Elements",
  Title		= "STACOM 2012, Nice, France.",
  Year		= "2013",
  Publisher	= "Springer Berlin Heidelberg",
  Address	= "Berlin, Heidelberg",
  Pages		= "44--52",
  ISBN		= "978-3-642-36961-2",
  DOI		= "10.1007/978-3-642-36961-2_6"
}

@Article{	  ismail2013ijnmbe,
  Title		= {Coupled and reduced dimensional modeling of respiratory
		  mechanics during spontaneous breathing},
  Author	= {Ismail, M and Comerford, A and Wall, WA},
  Journal	= {International Journal for Numerical Methods in Biomedical
		  Engineering},
  Volume	= {29},
  Number	= {11},
  Pages		= {1285--1305},
  Year		= {2013},
  Publisher	= {Wiley Online Library}
}

@Article{	  ismail2013jcp,
  Title		= {Adjoint-based inverse analysis of windkessel parameters
		  for patient-specific vascular models},
  Author	= {Ismail, Mahmoud and Wall, Wolfgang A and Gee, Michael W},
  Journal	= {Journal of Computational Physics},
  Volume	= {244},
  Pages		= {113--130},
  Year		= {2013},
  Publisher	= {Elsevier}
}

@Article{	  ismail_adjoint-based_2013,
  Title		= {Adjoint-Based Inverse Analysis of Windkessel Parameters
		  for Patient-Specific Vascular Models},
  Volume	= {244},
  JournalTitle	= {Journal of Computational Physics},
  Year		= {2013},
  Pages		= {113--130},
  Author	= {Ismail, Mahmoud and Wall, Wolfgang A. and Gee, Michael
		  W.}
}

@InProceedings{	  ismail_cfd_2012,
  Title		= {{{CFD}} Challenge: Hemodynamic Simulation of a
		  Patient-Specific Aortic Coarctation Model with
		  Adjoint-Based Calibrated Windkessel Elements},
  URL		= {http://link.springer.com/chapter/10.1007/978-3-642-36961-2_6},
  ShortTitle	= {{{CFD}} Challenge},
  BookTitle	= {International {{Workshop}} on {{Statistical Atlases}} and
		  {{Computational Models}} of the {{Heart}}},
  Publisher	= {{Springer}},
  URLDate	= {2016-11-21},
  Year		= {2012},
  Pages		= {44--52},
  Author	= {Ismail, Mahmoud and Gee, Michael W. and Wall, Wolfgang
		  A.}
}

@Article{	  iung2003prospective,
  Title		= {A prospective survey of patients with valvular heart
		  disease in Europe: The Euro Heart Survey on Valvular Heart
		  Disease},
  Author	= {Iung, Bernard and Baron, Gabriel and Butchart, Eric G and
		  Delahaye, Fran{\c{c}}ois and Gohlke-B{\"a}rwolf, Christa
		  and Levang, Olaf W and Tornos, Pilar and Vanoverschelde,
		  Jean-Louis and Vermeer, Frank and Boersma, Eric and others},
  Journal	= {European heart journal},
  Volume	= {24},
  Number	= {13},
  Pages		= {1231--1243},
  Year		= {2003},
  Publisher	= {Oxford University Press}
}

@Article{	  iung2011epidemiology,
  Title		= {Epidemiology of valvular heart disease in the adult},
  Author	= {Iung, B. and Vahanian, A.},
  Journal	= {Nature Reviews Cardiology},
  Volume	= {8},
  Number	= {3},
  Pages		= {162--172},
  Year		= {2011},
  Publisher	= {Nature Publishing Group}
}

@Article{	  jackson-james-86,
  Author	= {Jackson, G.W. and James, D.F.},
  Journal	= {The Canadian Journal of Chemical Engineering},
  Title		= {The permeability of fibrous porous media},
  Volume	= {64},
  Year		= {1986}
}

###Article{	  jackson-james-86,
  Author	= {Jackson, G.W. and James, D.F.},
  Journal	= {The Canadian Journal of Chemical Engineering},
  Title		= {The permeability of fibrous porous media},
  Volume	= {64},
  Year		= {1986}
}

@Article{	  james-davis-01,
  Annote	= {brinkman},
  Author	= {James, D.F. and Davis, A.M.J.},
  code		= {por8},
  Journal	= {J. Fluid Mech.},
  Pages		= {47-72},
  Title		= {Flow at the interface of a model fibrous porous medium},
  Volume	= {426},
  Year		= {2001}
}

###Article{	  james-davis-01,
  Annote	= {brinkman},
  Author	= {James, D.F. and Davis, A.M.J.},
  code		= {por8},
  Journal	= {J. Fluid Mech.},
  Pages		= {47-72},
  Title		= {Flow at the interface of a model fibrous porous medium},
  Volume	= {426},
  Year		= {2001}
}

@InProceedings{	  jarvinen-raback-lyly-05,
  Author	= {J\"arvinen, E. and R\.aback, P. and Lyly, M.},
  BookTitle	= {2nd International Symposium on Modelling of Physiological
		  Flows -- MPF 2005, Sesimbra, Portugal},
  Title		= {Optimization of fluid-structure interaction scheme for
		  arterial flow simulations},
  Year		= {2005}
}

###InProceedings{ jarvinen-raback-lyly-05,
  Author	= {J\"arvinen, E. and R\.aback, P. and Lyly, M.},
  BookTitle	= {2nd International Symposium on Modelling of Physiological
		  Flows -- MPF 2005, Sesimbra, Portugal},
  Title		= {Optimization of fluid-structure interaction scheme for
		  arterial flow simulations},
  Year		= {2005}
}

@Article{	  jenkins1999coarctation,
  Title		= {Coarctation of the aorta: natural history and outcome
		  after surgical treatment},
  Author	= {Jenkins, NP and Ward, C},
  Journal	= {Qjm},
  Volume	= {92},
  Number	= {7},
  Pages		= {365--371},
  Year		= {1999},
  Publisher	= {Oxford Univ Press}
}

@Article{	  jenkins_coarctation_1999,
  Title		= {Coarctation of the Aorta: Natural History and Outcome
		  after Surgical Treatment},
  Volume	= {92},
  ShortTitle	= {Coarctation of the Aorta},
  Number	= {7},
  JournalTitle	= {Qjm},
  Year		= {1999},
  Pages		= {365--371},
  Author	= {Jenkins, N. P. and Ward, C.}
}

@Article{	  jenson2013raj,
  Title		= {Review of Cardiac and {MR} Perfusion and Imaging},
  Author	= {Jenson, Sheldon and Craig, Steven and York, Gerald and
		  Steel, Kevin},
  Journal	= {Journal of the American Osteopathic College of Radiology},
  Year		= {2013},
  Volume	= {2},
  File		= {:Jenson2013RAJ.pdf:PDF},
  Keywords	= {perfusion, MRI}
}

@Book{		  jikov-kozlov-94,
  Address	= {Berlin},
  Author	= {Jikov, V. V. and Kozlov, S. M. and Ole\u{\i}nik, O. A.},
  Publisher	= {Springer-Verlag},
  Title		= {Homogenization of differential operators and integral
		  functionals},
  Year		= {1994}
}

###Book{	  jikov-kozlov-94,
  Address	= {Berlin},
  Author	= {Jikov, V. V. and Kozlov, S. M. and Ole\u{\i}nik, O. A.},
  Publisher	= {Springer-Verlag},
  Title		= {Homogenization of differential operators and integral
		  functionals},
  Year		= {1994}
}

@Book{		  john2016finite,
  Title		= {Finite element methods for incompressible flow problems},
  Author	= {John, Volker},
  Journal	= {Springer series in computational mathematics (},
  Volume	= {51},
  Year		= {2016},
  Publisher	= {Springer}
}

@Article{	  john_slip_2002,
  Title		= {Slip with Friction and Penetration with Resistance
		  Boundary Conditions for the {{Navier}}â{{Stokes}}
		  EquationsâNumerical Tests and Aspects of the
		  Implementation},
  Volume	= {147},
  ISSN		= {0377-0427},
  URL		= {http://www.sciencedirect.com/science/article/pii/S0377042702004375},
  DOI		= {10.1016/S0377-0427(02)00437-5},
  Abstract	= {We consider slip with friction and penetration with
		  resistance boundary conditions in the steady state
		  NavierâStokes equations. This paper describes some
		  aspects of the implementation of these boundary conditions
		  for finite element discretizations. Numerical tests on two-
		  and three-dimensional channel flows across a step using the
		  slip with friction boundary condition study the influence
		  of the friction parameter on the position of the
		  reattachment point and the reattachment line of the
		  recirculating vortex, respectively.},
  Number	= {2},
  JournalTitle	= {Journal of Computational and Applied Mathematics},
  ShortJournal	= {Journal of Computational and Applied Mathematics},
  URLDate	= {2016-04-20},
  Date		= {2002},
  Pages		= {287-300},
  Author	= {John, Volker}
}

@Article{	  john_time-dependent_2006,
  Title		= {Time-Dependent Flow across a Step: The Slip with Friction
		  Boundary Condition},
  Volume	= {50},
  URL		= {http://onlinelibrary.wiley.com/doi/10.1002/fld.1074/full},
  ShortTitle	= {Time-Dependent Flow across a Step},
  Number	= {6},
  JournalTitle	= {International journal for numerical methods in fluids},
  URLDate	= {2016-08-22},
  Date		= {2006},
  Pages		= {713--731},
  Author	= {John, Volker and Liakos, Anastasios}
}

@Article{	  johnsiamreview2016,
  Title		= {On the divergence constraint in mixed finite element
		  methods for incompressible flows},
  Author	= {John, V. and Linke, A. and Merdon, C. and Neilan, M. and
		  Rebholz, L.},
  Journal	= {SIAM Review},
  Note		= {in press}
}

@Book{		  johnson-97,
  Address	= {Cambridge},
  Author	= {Johnson, R. S.},
  Publisher	= {Cambridge University Press},
  Title		= {A modern introduction to the mathematical theory of water
		  waves},
  Year		= {1997}
}

###Book{	  johnson-97,
  Address	= {Cambridge},
  Author	= {Johnson, R. S.},
  Publisher	= {Cambridge University Press},
  Title		= {A modern introduction to the mathematical theory of water
		  waves},
  Year		= {1997}
}

@Article{	  johnson-saranen-86,
  Author	= {Johnson, C. and Saranen, J.},
  Journal	= {Math. of Comp.},
  Month		= {July},
  Number	= {175},
  Pages		= {1-18},
  Title		= {Streamline diffusion methods for the incompressible
		  {Euler} and {Navier-Stokes} equations},
  Volume	= {47},
  Year		= {1986}
}

###Article{	  johnson-saranen-86,
  Author	= {Johnson, C. and Saranen, J.},
  Journal	= {Math. of Comp.},
  Month		= {July},
  Number	= {175},
  Pages		= {1-18},
  Title		= {Streamline diffusion methods for the incompressible
		  {Euler} and {Navier-Stokes} equations},
  Volume	= {47},
  Year		= {1986}
}

@Article{	  johnson2010mrm,
  Title		= {Improved SNR in phase contrast velocimetry with five-point
		  balanced flow encoding.},
  Author	= {Johnson, Kevin M. and Markl, Michael},
  Journal	= {Magn Reson Med},
  Year		= {2010},
  Month		= {Feb},
  Number	= {2},
  Pages		= {349--355},
  Volume	= {63},
  Abstract	= {Phase contrast velocimetry can be utilized to measure
		  complex flow for both quantitative and qualitative
		  assessment of vascular hemodynamics. However, phase
		  contrast requires that a maximum measurable velocity be set
		  that balances noise and phase aliasing. To efficiently
		  reduce noise in phase contrast images, several
		  investigators have proposed extended velocity encoding
		  schemes that use extra encodings to unwrap phase aliasing;
		  however, existing techniques can lead to significant
		  increases in echo and scan time, limiting their clinical
		  benefits. In this work, we have developed a novel
		  five-point velocity encoding scheme that efficiently
		  reduces noise with minimal increases in scan and echo time.
		  Investigations were performed in phantoms, demonstrating a
		  63\% increase in velocity-to-noise ratio compared to
		  standard four-point encoding schemes. Aortic velocity
		  measurements were performed in healthy volunteers, showing
		  similar velocity-to-noise ratio improvements. In those
		  volunteers, it was also demonstrated that, without
		  sacrificing accuracy, low-resolution images can be used for
		  the fifth encoding point, reducing the scan time penalty
		  from 25\% down to less than 1\%.},
  DOI		= {10.1002/mrm.22202},
  Institution	= {Department of Medical Physics, University of Wisconsin,
		  Madison, Wisconsin 53705-2275, USA. kmjohnson3@wisc.e},
  Keywords	= {Algorithms; Aorta, anatomy /&/ histology/physiology; Blood
		  Flow Velocity, physiology; Contrast Media; Humans; Image
		  Enhancement, methods; Image Interpretation,
		  Computer-Assisted, methods; Imaging, Three-Dimensional,
		  methods; Magnetic Resonance Angiography, methods;
		  Reproducibility of Results; Rheology, methods; Sensitivity
		  and Specificity},
  Language	= {eng},
  medline-pst	= {ppublish},
  owner		= {stoeckc},
  pmid		= {20099326},
  timestamp	= {2015.07.24},
  URL		= {http://dx.doi.org/10.1002/mrm.22202}
}

@Article{	  johnston-kilpatrick-91,
  Author	= {Johnston, P.R. and Kilpatrick, D.},
  Journal	= {J. Biomechanics},
  Number	= {11},
  Pages		= {1069-1077},
  Title		= {Mathematical modelling of flow through an irregular
		  arterial stenosis},
  Volume	= {24},
  Year		= {1991}
}

###Article{	  johnston-kilpatrick-91,
  Author	= {Johnston, P.R. and Kilpatrick, D.},
  Journal	= {J. Biomechanics},
  Number	= {11},
  Pages		= {1069-1077},
  Title		= {Mathematical modelling of flow through an irregular
		  arterial stenosis},
  Volume	= {24},
  Year		= {1991}
}

###Article{	  johnston_non-newtonian_2004,
  langid	= {english},
  Title		= {Non-{{Newtonian}} Blood Flow in Human Right Coronary
		  Arteries: Steady State Simulations},
  Volume	= {37},
  ISSN		= {00219290},
  URL		= {http://linkinghub.elsevier.com/retrieve/pii/S0021929003003579},
  DOI		= {10.1016/j.jbiomech.2003.09.016},
  ShortTitle	= {Non-{{Newtonian}} Blood Flow in Human Right Coronary
		  Arteries},
  Abstract	= {This study looks at blood ï¬ow through four different
		  right coronary arteries, which have been reconstructed from
		  bi-plane angiograms. Five non-Newtonian blood models, as
		  well as the usual Newtonian model of blood viscosity, are
		  used to study the wall shear stress in each of these
		  arteries at a particular point in the cardiac cycle. It was
		  found that in the case of steady ï¬ow in a given artery,
		  the pattern of wall shear stress is consistent across all
		  models. The magnitude of wall shear stress, however, is
		  inï¬uenced by the model used and correlates with graphs of
		  shear stress versus strain for each model. For mid-range
		  velocities of around 0:2 m sÃ1; the models are virtually
		  indistinguishable. Local and global non-Newtonian
		  importance factors are introduced, in an attempt to
		  quantify the types of ï¬ows where non-Newtonian behaviour
		  is signiï¬cant. It is concluded that, while the Newtonian
		  model of blood viscosity is a good approximation in regions
		  of mid-range to high shear, it is advisable to use the
		  Generalised Power Law model (which tends to the Newtonian
		  model in those shear ranges in any case) in order to
		  achieve better approximation of wall shear stress at low
		  shear.},
  Number	= {5},
  JournalTitle	= {Journal of Biomechanics},
  URLDate	= {2019-02-13},
  Year		= {2004-05},
  Pages		= {709-720},
  Author	= {Johnston, Barbara M. and Johnston, Peter R. and Corney,
		  Stuart and Kilpatrick, David}
}

@Article{	  jones1999optimal,
  Author	= {Jones, DK and Horsfield, MA and Simmons, A},
  Title		= {Optimal strategies for measuring diffusion in anisotropic
		  systems by magnetic resonance imaging},
  Journal	= {Magnetic Resonance in Medicine},
  Year		= {1999},
  Volume	= {42}
}

@InProceedings{	  juarez-glowinski-pan-02,
  Author	= {Ju{\'a}rez, L. H. and Glowinski, R. and Pan, T. W.},
  BookTitle	= {Proceedings of the Fifth International Conference on
		  Spectral and High Order Methods (ICOSAHOM-01) (Uppsala)},
  coden		= {JSCOEB},
  fjournal	= {Journal of Scientific Computing},
  ISSN		= {0885-7474},
  Journal	= {J. Sci. Comput.},
  mrclass	= {76M10 (65M60 76T20)},
  mrnumber	= {MR1910762},
  Number	= {1-4},
  Pages		= {683--694},
  Title		= {Numerical simulation of the sedimentation of rigid bodies
		  in an incompressible viscous fluid by {L}agrange
		  multiplier/fictitious domain methods combined with the
		  {T}aylor-{H}ood finite element approximation},
  Volume	= {17},
  Year		= {2002}
}

###InProceedings{ juarez-glowinski-pan-02,
  Author	= {Ju{\'a}rez, L. H. and Glowinski, R. and Pan, T. W.},
  BookTitle	= {Proceedings of the Fifth International Conference on
		  Spectral and High Order Methods (ICOSAHOM-01) (Uppsala)},
  coden		= {JSCOEB},
  fjournal	= {Journal of Scientific Computing},
  ISSN		= {0885-7474},
  Journal	= {J. Sci. Comput.},
  mrclass	= {76M10 (65M60 76T20)},
  mrnumber	= {MR1910762},
  Number	= {1-4},
  Pages		= {683--694},
  Title		= {Numerical simulation of the sedimentation of rigid bodies
		  in an incompressible viscous fluid by {L}agrange
		  multiplier/fictitious domain methods combined with the
		  {T}aylor-{H}ood finite element approximation},
  Volume	= {17},
  Year		= {2002}
}

@Article{	  jugdutt2003circ,
  Title		= {Ventricular Remodeling After Infarction and the
		  Extracellular Collagen Matrix: When Is Enough Enough?},
  Author	= {Jugdutt, Bodh I.},
  Journal	= {Circulation},
  Year		= {2003},
  Number	= {11},
  Pages		= {1395-1403},
  Volume	= {108},
  DOI		= {10.1161/01.CIR.0000085658.98621.49},
  EPrint	= {http://circ.ahajournals.org/content/108/11/1395.full.pdf+html},
  File		= {jugdutt03.pdf:jugdutt03.pdf:PDF},
  timestamp	= {2015/09/13},
  URL		= {http://circ.ahajournals.org/content/108/11/1395.short}
}

@InProceedings{	  julier-03,
  Author	= {Julier, S.},
  BookTitle	= {Proc. of the American Control Conference},
  date-added	= {},
  date-modified	= {},
  Pages		= {2430--4234},
  Title		= {The Spherical Simplex Unscented Transformation},
  Year		= {2003}
}

###InProceedings{ julier-03,
  Author	= {Julier, S.},
  BookTitle	= {Proc. of the American Control Conference},
  date-added	= {},
  date-modified	= {},
  Pages		= {2430--4234},
  Title		= {The Spherical Simplex Unscented Transformation},
  Year		= {2003}
}

@InProceedings{	  julier-uhlmann-02,
  Author	= {Julier, S. and Uhlmann, J.},
  BookTitle	= {Proc. of IEEE Am.Contr.Conf.},
  date-added	= {},
  date-modified	= {},
  Pages		= {887--892},
  Title		= {Reduced Sigma Point Filters for the Propagation of Means
		  and Covariances through Nonlinear Transformations},
  Year		= {2002}
}

###InProceedings{ julier-uhlmann-02,
  Author	= {Julier, S. and Uhlmann, J.},
  BookTitle	= {Proc. of IEEE Am.Contr.Conf.},
  date-added	= {},
  date-modified	= {},
  Pages		= {887--892},
  Title		= {Reduced Sigma Point Filters for the Propagation of Means
		  and Covariances through Nonlinear Transformations},
  Year		= {2002}
}

@Article{	  julier-uhlmann-durrant-whyte-00,
  Title		= {{A new method for the nonlinear transformation of means
		  and covariances in filters and estimators}},
  Author	= {Julier, S. and Uhlmann, J. and Durrant-Whyte, H.F.},
  Journal	= {Automatic Control, IEEE Transactions on},
  Volume	= {45},
  Number	= {3},
  Pages		= {477--482},
  ISSN		= {0018-9286},
  Year		= {2000},
  Publisher	= {IEEE}
}

###Article{	  julier-uhlmann-durrant-whyte-00,
  Title		= {{A new method for the nonlinear transformation of means
		  and covariances in filters and estimators}},
  Author	= {Julier, S. and Uhlmann, J. and Durrant-Whyte, H.F.},
  Journal	= {Automatic Control, IEEE Transactions on},
  Volume	= {45},
  Number	= {3},
  Pages		= {477--482},
  ISSN		= {0018-9286},
  Year		= {2000},
  Publisher	= {IEEE}
}

@InProceedings{	  julier-uhlmann-durrant-whyte-95,
  Author	= {Julier, S. and Uhlmann, J. and Durrant-Whyte, H.F.},
  BookTitle	= {American Control Conference},
  date-added	= {2009-03-10 11:39:26 -0700},
  date-modified	= {2009-03-10 11:43:35 -0700},
  Pages		= {1628--1632},
  Title		= {A new approach for filtering nonlinear systems},
  Year		= {1995}
}

###InProceedings{ julier-uhlmann-durrant-whyte-95,
  Author	= {Julier, S. and Uhlmann, J. and Durrant-Whyte, H.F.},
  BookTitle	= {American Control Conference},
  date-added	= {2009-03-10 11:39:26 -0700},
  date-modified	= {2009-03-10 11:43:35 -0700},
  Pages		= {1628--1632},
  Title		= {A new approach for filtering nonlinear systems},
  Year		= {1995}
}

@InProceedings{	  julier_new_1997,
  Title		= {New Extension of the {{Kalman}} Filter to Nonlinear
		  Systems},
  Volume	= {3068},
  BookTitle	= {Signal Processing, Sensor Fusion, and Target Recognition
		  {{VI}}},
  Publisher	= {{International Society for Optics and Photonics}},
  Year		= {1997},
  Pages		= {182--194},
  Author	= {Julier, Simon J. and Uhlmann, Jeffrey K.}
}

@Article{	  jung2006ejcs,
  Title		= {Investigating myocardial motion by MRI using tissue phase
		  mapping.},
  Author	= {Jung, Bernd and Markl, Michael and F{\"{o}}ll, Daniela and
		  Hennig, J{\"{u}}rgen},
  Journal	= {Eur J Cardiothorac Surg},
  Year		= {2006},
  Month		= {Apr},
  Pages		= {S150--S157},
  Volume	= {29 Suppl 1},
  Abstract	= {Velocity-encoded phase contrast magnetic resonance imaging
		  (MRI) provides a tool to quantify regional myocardial wall
		  motion of the entire heart. It allows the acquisition of
		  three-directional velocity vector fields with high spatial
		  resolution that reflect the temporal evolution of
		  myocardial velocities over the cardiac cycle. In contrast
		  to other imaging modalities such as echocardiography left
		  ventricular performance can be assessed without limited
		  anatomical or functional coverage.Compared to other
		  techniques that quantify local myocardial contractility
		  (e.g. implanted ultrasonic crystals) by means of regional
		  displacement, phase contrast MRI provides information about
		  local and global left ventricular velocities (i.e. motion)
		  by utilizing the intrinsic motion sensitivity of MRI. The
		  resultant motion components of contraction, expansion,
		  rotation, lengthening, and shortening of the left ventricle
		  are described in high spatial and temporal detail. Phase
		  contrast measurements were performed in 12 healthy
		  volunteers with a respiratory-gated technique in order to
		  achieve a high temporal resolution of 13.8ms to demonstrate
		  the detailed assessment of global and regional myocardial
		  motion.Data revealed details in left ventricular motion
		  patterns that were previously not seen in phase contrast
		  measurements and are only known from echocardiography. For
		  all volunteers, characteristic myocardial motion patterns
		  and locally different radial (i.e. contraction and
		  expansion), rotational (i.e. twisting and untwisting) and
		  longitudinal (i.e. lengthening and shortening) motion
		  components could be detected with high accuracy.The phase
		  contrast MRI technique for high temporal resolution
		  velocity mapping is therefore very promising for the
		  investigation and better understanding of the myocardial
		  motion in normal subjects and patients with disturbed left
		  ventricular performance and may validate further testing of
		  different models of cardiac structure.},
  DOI		= {10.1016/j.ejcts.2006.02.066},
  Institution	= {Department of Diagnostic Radiology, Medical Physics,
		  University Hospital, Freiburg University, Hugstetterstr.55,
		  79106 Freiburg, Germany. bernd.jung@uniklinik-freiburg.de},
  Keywords	= {Heart, physiology; Humans; Image Processing,
		  Computer-Assisted, methods; Magnetic Resonance Imaging,
		  methods; Movement, physiology; Myocardial Contraction,
		  physiology; Rotation; Ventricular Function, Left,
		  physiology},
  Language	= {eng},
  medline-pst	= {ppublish},
  owner		= {stoeckc},
  pii		= {S1010-7940(06)00234-X},
  pmid		= {16563784},
  timestamp	= {2015.07.24},
  URL		= {http://dx.doi.org/10.1016/j.ejcts.2006.02.066}
}

@Article{	  kailath-sayed-hassibi-00,
  Title		= {Linear estimation},
  Author	= {Kailath, T. and Sayed, A.H. and Hassibi, B.},
  Year		= {2000},
  Publisher	= {Prentice-Hall, Inc.}
}

###Article{	  kailath-sayed-hassibi-00,
  Title		= {Linear estimation},
  Author	= {Kailath, T. and Sayed, A.H. and Hassibi, B.},
  Year		= {2000},
  Publisher	= {Prentice-Hall, Inc.}
}

@Article{	  kajstura2010circ,
  Title		= {Cardiomyogenesis in the Adult Human Heart},
  Author	= {Kajstura, Jan and Urbanek, Konrad and Perl, Shira and
		  Hosoda, Toru and Zheng, Hanqiao and OgÃ³rek, Barbara and
		  Ferreira-Martins, JoÃ£o and Goichberg, Polina and
		  Rondon-Clavo, Carlos and Sanada, Fumihiro and D'Amario,
		  Domenico and Rota, Marcello and del Monte, Federica and
		  Orlic, Donald and Tisdale, John and Leri, Annarosa and
		  Anversa, Piero},
  Journal	= {Circulation Research},
  Year		= {2010},
  Number	= {2},
  Pages		= {305-315},
  Volume	= {107},
  Abstract	= {Rationale: The ability of the human heart to regenerate
		  large quantities of myocytes remains controversial, and the
		  extent of myocyte renewal claimed by different laboratories
		  varies from none to nearly 20% per year.Objective: To
		  address this issue, we examined the percentage of myocytes,
		  endothelial cells, and fibroblasts labeled by
		  iododeoxyuridine in postmortem samples obtained from cancer
		  patients who received the thymidine analog for therapeutic
		  purposes. Additionally, the potential contribution of DNA
		  repair, polyploidy, and cell fusion to the measurement of
		  myocyte regeneration was determined.Methods and Results:
		  The fraction of myocytes labeled by iododeoxyuridine ranged
		  from 2.5% to 46%, and similar values were found in
		  fibroblasts and endothelial cells. An average 22%, 20%, and
		  13% new myocytes, fibroblasts, and endothelial cells were
		  generated per year, suggesting that the lifespan of these
		  cells was approximately 4.5, 5, and 8 years, respectively.
		  The newly formed cardiac cells showed a fully
		  differentiated adult phenotype and did not express the
		  senescence-associated protein p16INK4a. Moreover,
		  measurements by confocal microscopy and flow cytometry
		  documented that the human heart is composed predominantly
		  of myocytes with 2n diploid DNA content and that tetraploid
		  and octaploid nuclei constitute only a small fraction of
		  the parenchymal cell pool. Importantly, DNA repair, ploidy
		  formation, and cell fusion were not implicated in the
		  assessment of myocyte regeneration.Conclusions: Our
		  findings indicate that the human heart has a significant
		  growth reserve and replaces its myocyte and nonmyocyte
		  compartment several times during the course of life.},
  DOI		= {10.1161/CIRCRESAHA.110.223024},
  EPrint	= {http://circres.ahajournals.org/content/107/2/305.full.pdf+html},
  File		= {kajstura10.pdf:kajstura10.pdf:PDF},
  timestamp	= {2015/09/23},
  URL		= {http://circres.ahajournals.org/content/107/2/305.abstract}
}

@Article{	  kalman-bucy-61,
  Author	= {Kalman, R. and Bucy, R.},
  Journal	= {Trans. ASME J. Basic. Eng},
  Pages		= {95-108},
  Title		= {New results in linear filtering and prediction theory},
  Volume	= {83},
  Year		= {1961}
}

###Article{	  kalman-bucy-61,
  Author	= {Kalman, R. and Bucy, R.},
  Journal	= {Trans. ASME J. Basic. Eng},
  Pages		= {95-108},
  Title		= {New results in linear filtering and prediction theory},
  Volume	= {83},
  Year		= {1961}
}

@Article{	  kalnay_4-d-var_2007,
  Title		= {4-{{D}}-{{Var}} or Ensemble {{Kalman}} Filter?},
  Volume	= {59},
  ISSN		= {null},
  URL		= {https://doi.org/10.1111/j.1600-0870.2007.00261.x},
  DOI		= {10.1111/j.1600-0870.2007.00261.x},
  Abstract	= {We consider the relative advantages of two advanced data
		  assimilation systems, 4-D-Var and ensemble Kalman filter
		  (EnKF), currently in use or under consideration for
		  operational implementation.With the Lorenz model, we
		  explore the impact of tuning assimilation parameters such
		  as the assimilation window length and background error
		  covariance in 4-D-Var, variance inflation in EnKF, and the
		  effect of model errors and reduced observation coverage.
		  For short assimilation windows EnKF gives more accurate
		  analyses. Both systems reach similar levels of accuracy if
		  long windows are used for 4-D-Var. For infrequent
		  observations, when ensemble perturbations grow non-linearly
		  and become non-Gaussian, 4-D-Var attains lower errors than
		  EnKF. If the model is imperfect, the 4-D-Var with long
		  windows requires weak constraint. Similar results are
		  obtained with a quasi-geostrophic channel model. EnKF
		  experiments made with the primitive equations SPEEDY model
		  provide comparisons with 3-D-Var and guidance on model
		  error and âobservation localizationâ. Results obtained
		  using operational models and both simulated and real
		  observations indicate that currently EnKF is becoming
		  competitive with 4-D-Var, and that the experience acquired
		  with each of these methods can be used to improve the
		  other. A table summarizes the pros and cons of the two
		  methods.},
  Number	= {5},
  JournalTitle	= {Tellus A: Dynamic Meteorology and Oceanography},
  URLDate	= {2019-02-27},
  Year		= {2007-01-01},
  Pages		= {758-773},
  Author	= {Kalnay, Eugenia and Li, Hong and Miyoshi, Takemasa and
		  Yang, Shu-Chih and Ballabrera-Poy, Joaquim}
}

@Book{		  kalnay_atmospheric_2003,
  Title		= {Atmospheric Modeling, Data Assimilation and
		  Predictability},
  Publisher	= {{Cambridge university press}},
  Year		= {2003},
  Author	= {Kalnay, Eugenia}
}

@Article{	  kanzaki2010circ,
  Title		= {Three-dimensional architecture of cardiomyocytes and
		  connective tissue in human heart revealed by scanning
		  electron microscopy},
  Author	= {Kanzaki, Yumiko and Terasaki, Fumio and Okabe, Makoto and
		  Fujita, Shuichi and Katashima, Takashi and Otsuka, Kaoru
		  and Ishizaka, Nobukazu},
  Journal	= {Circulation},
  Volume	= {122},
  Number	= {19},
  Pages		= {1973--1974},
  Year		= {2010},
  File		= {:Kanzaki2010Circ.pdf:PDF},
  Publisher	= {Am Heart Assoc}
}

@Article{	  karampinos2010intravoxel,
  Title		= {Intravoxel partially coherent motion technique:
		  characterization of the anisotropy of skeletal muscle
		  microvasculature},
  Author	= {Karampinos, Dimitrios C and King, Kevin F and Sutton,
		  Bradley P and Georgiadis, John G},
  Journal	= {Journal of Magnetic Resonance Imaging},
  Volume	= {31},
  Number	= {4},
  Pages		= {942--953},
  Year		= {2010},
  Publisher	= {Wiley Online Library}
}

@Article{	  karcher-kolesnikov-andreev-02,
  Author	= {Karcher, C. and Kolesnikov, Y. and Andreev, O. and Thess,
		  A.},
  code		= {mhd41},
  Journal	= {Eur. J. Mech. B/Fluids},
  Pages		= {75-90},
  Title		= {Natural convection in a liquid metal heated from above and
		  influenced by a magnetic field},
  Volume	= {21},
  Year		= {2002}
}

###Article{	  karcher-kolesnikov-andreev-02,
  Author	= {Karcher, C. and Kolesnikov, Y. and Andreev, O. and Thess,
		  A.},
  code		= {mhd41},
  Journal	= {Eur. J. Mech. B/Fluids},
  Pages		= {75-90},
  Title		= {Natural convection in a liquid metal heated from above and
		  influenced by a magnetic field},
  Volume	= {21},
  Year		= {2002}
}

@Article{	  karlsen-risebro-01,
  Author	= {Karlsen, K. H. and Risebro, N. H.},
  Journal	= {$M^2$AN},
  Number	= {2},
  Pages		= {239-270},
  Title		= {On convergence of finite difference schemes for viscous
		  and inviscid conservation laws with rough coefficients},
  Volume	= {35},
  Year		= {2001}
}

###Article{	  karlsen-risebro-01,
  Author	= {Karlsen, K. H. and Risebro, N. H.},
  Journal	= {$M^2$AN},
  Number	= {2},
  Pages		= {239-270},
  Title		= {On convergence of finite difference schemes for viscous
		  and inviscid conservation laws with rough coefficients},
  Volume	= {35},
  Year		= {2001}
}

@Article{	  katayama2016diagnosis,
  Title		= {Diagnosis and management of patients with asymptomatic
		  severe aortic stenosis},
  Author	= {Katayama, Minako and Chaliki, Hari P},
  Journal	= {World journal of cardiology},
  Volume	= {8},
  Number	= {2},
  Pages		= {192},
  Year		= {2016},
  Publisher	= {Baishideng Publishing Group Inc}
}

@Article{	  kato-84,
  Author	= {Kato, T.},
  Journal	= {Math. Zeit.},
  Pages		= {471-480},
  Title		= {Strong {$L^p$} solutions of the {Navier-Stokes} equations
		  in {$R^m$} with applications to weak solutions},
  Volume	= {187},
  Year		= {1984}
}

###Article{	  kato-84,
  Author	= {Kato, T.},
  Journal	= {Math. Zeit.},
  Pages		= {471-480},
  Title		= {Strong {$L^p$} solutions of the {Navier-Stokes} equations
		  in {$R^m$} with applications to weak solutions},
  Volume	= {187},
  Year		= {1984}
}

@Book{		  kelley-95,
  Author	= {Kelley},
  Publisher	= {SIAM},
  Title		= {Iterative methods for linear and nonlinear equations},
  Year		= {1995}
}

###Book{	  kelley-95,
  Author	= {Kelley},
  Publisher	= {SIAM},
  Title		= {Iterative methods for linear and nonlinear equations},
  Year		= {1995}
}

@Article{	  kerckhoffs2012mrc,
  Title		= {A single strain-based growth law predicts concentric and
		  eccentric cardiac growth during pressure and volume
		  overload },
  Author	= {Roy C.P. Kerckhoffs and Jeffrey H. Omens and Andrew D.
		  McCulloch},
  Journal	= {Mechanics Research Communications },
  Year		= {2012},
  Note		= {Recent Advances in the Biomechanics of Growth and
		  Remodeling },
  Pages		= {40 - 50},
  Volume	= {42},
  Abstract	= {Adult cardiac muscle adapts to mechanical changes in the
		  environment by growth and remodeling (G&amp;R) via a
		  variety of mechanisms. Hypertrophy develops when the heart
		  is subjected to chronic mechanical overload. In ventricular
		  pressure overload (e.g. due to aortic stenosis) the heart
		  typically reacts by concentric hypertrophic growth,
		  characterized by wall thickening due to myocyte radial
		  growth when sarcomeres are added in parallel. In
		  ventricular volume overload, an increase in filling
		  pressure (e.g. due to mitral regurgitation) leads to
		  eccentric hypertrophy as myocytes grow axially by adding
		  sarcomeres in series leading to ventricular cavity
		  enlargement that is typically accompanied by some wall
		  thickening. The specific biomechanical stimuli that
		  stimulate different modes of ventricular hypertrophy are
		  still poorly understood. In a recent study, based on in
		  vitro studies in micropatterned myocyte cell cultures
		  subjected to stretch, we proposed that cardiac myocytes
		  grow longer to maintain a preferred sarcomere length in
		  response to increased fiber strain and grow thicker to
		  maintain interfilament lattice spacing in response to
		  increased cross-fiber strain. Here, we test whether this
		  growth law is able to predict concentric and eccentric
		  hypertrophy in response to aortic stenosis and mitral valve
		  regurgitation, respectively, in a computational model of
		  the adult canine heart coupled to a closed loop model of
		  circulatory hemodynamics. A non-linear finite element model
		  of the beating canine ventricles coupled to the circulation
		  was used. After inducing valve alterations, the ventricles
		  were allowed to adapt in shape in response to mechanical
		  stimuli over time. The proposed growth law was able to
		  reproduce major acute and chronic physiological responses
		  (structural and functional) when integrated with
		  comprehensive models of the pressure-overloaded and
		  volume-overloaded canine heart, coupled to a closed-loop
		  circulation. We conclude that strain-based biomechanical
		  stimuli can drive cardiac growth, including wall thickening
		  during pressure overload. },
  DOI		= {http://dx.doi.org/10.1016/j.mechrescom.2011.11.004},
  File		= {kerckhoffs12.pdf:kerckhoffs12.pdf:PDF},
  ISSN		= {0093-6413},
  Keywords	= {Cardiac growth},
  timestamp	= {2015/09/10},
  URL		= {http://www.sciencedirect.com/science/article/pii/S0093641311002163}
}

@InCollection{	  kerckhoffs_effect_2007,
  Title		= {Effect of pacing site and infarct location on regional
		  mechanics and global hemodynamics in a model based study of
		  heart failure},
  Author	= {Kerckhoffs, R.C.P. and McCulloch, A.D. and Omens, J.H. and
		  Mulligan, L.J.},
  BookTitle	= {Functional Imaging and Modeling of the Heart},
  Publisher	= {Springer},
  Year		= {2007},
  Pages		= {350--360},
  File		= {Kerckhoffs_2007b.pdf:/home/hoermann/.zotero/zotero/krpbc0h6.default/zotero/storage/AZSS4J37/Kerckhoffs_2007b.pdf:application/pdf},
  URL		= {http://link.springer.com/chapter/10.1007/978-3-540-72907-5_36},
  URLDate	= {2014-11-27}
}

@Article{	  kerckhoffs_effects_2009,
  Title		= {Effects of biventricular pacing and scar size in a
		  computational model of the failing heart with left bundle
		  branch block},
  Author	= {Kerckhoffs, Roy C.P. and McCulloch, A.D. and Omens, J.H.
		  and Mulligan, L.J.},
  Journal	= {Medical Image Analysis},
  Year		= {2009},
  Month		= apr,
  Number	= {2},
  Pages		= {362--369},
  Volume	= {13},
  DOI		= {10.1016/j.media.2008.06.013},
  File		= {Kerckhoffs2008.pdf:/home/hoermann/.zotero/zotero/krpbc0h6.default/zotero/storage/Z3WB8T3H/Kerckhoffs2008.pdf:application/pdf},
  ISSN		= {13618415},
  Language	= {en},
  URL		= {http://linkinghub.elsevier.com/retrieve/pii/S1361841508000698},
  URLDate	= {2014-11-27}
}

@Article{	  keshavarz2015complianceaoc,
  Title		= {The role of aortic compliance in determination of
		  coarctation severity: lumped parameter modeling, in vitro
		  study and clinical evaluation},
  Author	= {Keshavarz-Motamed, Zahra and Edelman, Elazer R and
		  Motamed, Payam K and Garcia, Julio and Dahdah, Nagib and
		  Kadem, Lyes},
  Journal	= {Journal of biomechanics},
  Volume	= {48},
  Number	= {16},
  Pages		= {4229--4237},
  Year		= {2015},
  Publisher	= {Elsevier}
}

@PhdThesis{	  kherief-84,
  Annote	= {mhd, existence, long time},
  Author	= {Kherief, K.},
  code		= {mhd31},
  School	= {Universit{\'e} de Paris {VII}},
  Title		= {Quelques propri{\'e}t{\'e}s des {\'e}quations de la
		  magn{\'e}tohydrodynamique stationnaires et d'{\'e}volution},
  Type		= {Th{\`e}se},
  Year		= {1984}
}

###PhdThesis{	  kherief-84,
  Annote	= {mhd, existence, long time},
  Author	= {Kherief, K.},
  code		= {mhd31},
  School	= {Universit{\'e} de Paris {VII}},
  Title		= {Quelques propri{\'e}t{\'e}s des {\'e}quations de la
		  magn{\'e}tohydrodynamique stationnaires et d'{\'e}volution},
  Type		= {Th{\`e}se},
  Year		= {1984}
}

@Article{	  kikuchi-93,
  Author	= {Kikuchi, F.},
  Journal	= {Sugaku expositions},
  Month		= {June},
  Number	= {1},
  Pages		= {332-345},
  Title		= {Numerical analysis electrostatic and magnetostatic
		  problem},
  Volume	= {6},
  Year		= {1993}
}

###Article{	  kikuchi-93,
  Author	= {Kikuchi, F.},
  Journal	= {Sugaku expositions},
  Month		= {June},
  Number	= {1},
  Pages		= {332-345},
  Title		= {Numerical analysis electrostatic and magnetostatic
		  problem},
  Volume	= {6},
  Year		= {1993}
}

@Article{	  kilner_helical_1993,
  Title		= {Helical and Retrograde Secondary Flow Patterns in the
		  Aortic Arch Studied by Three-Directional Magnetic Resonance
		  Velocity Mapping.},
  Volume	= {88},
  Number	= {5},
  JournalTitle	= {Circulation},
  Year		= {1993},
  Pages		= {2235--2247},
  Author	= {Kilner, Philip J. and Yang, Guang Z. and Mohiaddin, Raad
		  H. and Firmin, David N. and Longmore, Donald B.}
}

@Article{	  kilner_imaging_2011,
  langid	= {english},
  Title		= {Imaging Congenital Heart Disease in Adults},
  Volume	= {84},
  ISSN		= {0007-1285, 1748-880X},
  URL		= {http://www.birpublications.org/doi/10.1259/bjr/74240815},
  DOI		= {10.1259/bjr/74240815},
  Issue		= {special\_issue\_3},
  JournalTitle	= {The British Journal of Radiology},
  URLDate	= {2019-02-09},
  Year		= {2011-12},
  Pages		= {S258-S268},
  Author	= {Kilner, P J}
}

@Article{	  kim1995jacc,
  Title		= {Left ventricular blood flow patterns in normal subjects: a
		  quantitative analysis by three-dimensional magnetic
		  resonance velocity mapping.},
  Author	= {Kim, W. Y. and Walker, P. G. and Pedersen, E. M. and
		  Poulsen, J. K. and Oyre, S. and Houlind, K. and Yoganathan,
		  A. P.},
  Journal	= {J Am Coll Cardiol},
  Year		= {1995},
  Month		= {Jul},
  Number	= {1},
  Pages		= {224--238},
  Volume	= {26},
  Abstract	= {Magnetic resonance velocity mapping was used to
		  investigate the hypothesis of a vortex motion within the
		  left ventricle interacting with mitral valve motion and
		  inflow velocity.In vitro flow visualization studies have
		  suggested the presence of a large anterior vortex inside
		  the left ventricle during mitral inflow. However, to our
		  knowledge the occurrence of this phenomenon has not been
		  demonstrated in the human left ventricle.Magnetic resonance
		  velocity mapping was performed in 26 healthy volunteers
		  using a flow-adjusted gradient sequence for
		  three-dimensional flow velocity acquisition in the
		  long-axis plane of the left ventricle. By computer
		  processing, the flow vectors in the left ventricle were
		  visualized and animated dynamically.The early diastolic
		  mitral inflow was apically directed, and a large
		  counterclockwise anterior vortex was created within the
		  left ventricle shortly after the onset of the mid-diastolic
		  semiclosure of the anterior mitral leaflet. During
		  mid-diastolic diastasis, mitral inflow ceased until the
		  flow accelerated again at atrial systole. The final closure
		  of the mitral valve was preceded by a smaller vortex seen
		  at the tips of the mitral leaflets. At systolic ejection,
		  all flow vectors were directed toward the left ventricular
		  outflow tract. The anterior vortex had a radius of 1.62 +/-
		  0.24 cm (mean +/- SD), and the average angular velocity
		  (i.e., the rotation of an element about the center of the
		  vortex within the central core) was 30.08 +/- 9.98
		  radians/s. The maximal kinetic energy of the anterior
		  vortex was 4.3 x 10(-4) +/- 7.1 x 10(-5) J.The hypothesis
		  of a diastolic vortex formation in the human left ventricle
		  was confirmed, and its close temporal relation to the
		  motion of the anterior mitral leaflet was demonstrated.},
  Institution	= {Department of Thoracic and Cardiovascular Surgery, Skejby
		  Sygehus, Aarhus University Hospital, Denmark.},
  Keywords	= {Adult; Blood Flow Velocity; Female; Heart Ventricles,
		  anatomy /&/ histology; Humans; Magnetic Resonance Imaging,
		  methods; Male; Mitral Valve, anatomy /&/
		  histology/physiology; Regional Blood Flow; Reproducibility
		  of Results; Ventricular Function},
  Language	= {eng},
  medline-pst	= {ppublish},
  owner		= {stoeckc},
  pii		= {073510979500141L},
  pmid		= {7797756},
  timestamp	= {2015.07.28}
}

@Article{	  kim2009augmented,
  Title		= {Augmented Lagrangian method for constraining the shape of
		  velocity profiles at outlet boundaries for
		  three-dimensional finite element simulations of blood
		  flow},
  Author	= {Kim, HJ and Figueroa, CA and Hughes, TJR and Jansen, KE
		  and Taylor, CA},
  Journal	= {Comp. Methods Appl. Mech. Engrg.},
  Volume	= {198},
  Number	= {45},
  Pages		= {3551--3566},
  Year		= {2009},
  Publisher	= {Elsevier}
}

@Article{	  kim2010abe,
  Title		= {Patient-Specific Modeling of Blood Flow and Pressure in
		  Human Coronary Arteries},
  Author	= {Kim, H. J. and Vignon-Clementel, I. E. and Coogan, J. S.
		  and Figueroa, C. A. and Jansen, K. E. and Taylor, C. A.},
  Journal	= {Annals of Biomedical Engineering},
  Year		= {2010},
  Month		= {Jun},
  Number	= {10},
  Pages		= {3195--3209},
  Volume	= {38},
  DOI		= {10.1007/s10439-010-0083-6},
  File		= {:Kim2010ABE.pdf:PDF},
  ISSN		= {1573-9686},
  Keywords	= {coronary flow},
  Publisher	= {Springer Science + Business Media},
  URL		= {http://dx.doi.org/10.1007/s10439-010-0083-6}
}

@Article{	  kim_patient-specific_2010,
  langid	= {english},
  Title		= {Patient-{{Specific Modeling}} of {{Blood Flow}} and
		  {{Pressure}} in {{Human Coronary Arteries}}},
  Volume	= {38},
  ISSN		= {1573-9686},
  URL		= {https://doi.org/10.1007/s10439-010-0083-6},
  DOI		= {10.1007/s10439-010-0083-6},
  Abstract	= {Coronary flow is different from the flow in other parts of
		  the arterial system because it is influenced by the
		  contraction and relaxation of the heart. To model coronary
		  flow realistically, the compressive force of the heart
		  acting on the coronary vessels needs to be included. In
		  this study, we developed a method that predicts coronary
		  flow and pressure of three-dimensional epicardial coronary
		  arteries by considering models of the heart and arterial
		  system and the interactions between the two models. For
		  each coronary outlet, a lumped parameter coronary vascular
		  bed model was assigned to represent the impedance of the
		  downstream coronary vascular networks absent in the
		  computational domain. The intramyocardial pressure was
		  represented with either the left or right ventricular
		  pressure depending on the location of the coronary
		  arteries. The left and right ventricular pressure were
		  solved from the lumped parameter heart models coupled to a
		  closed loop system comprising a three-dimensional model of
		  the aorta, three-element Windkessel models of the rest of
		  the systemic circulation and the pulmonary circulation, and
		  lumped parameter models for the left and right sides of the
		  heart. The computed coronary flow and pressure and the
		  aortic flow and pressure waveforms were realistic as
		  compared to literature data.},
  Number	= {10},
  JournalTitle	= {Annals of Biomedical Engineering},
  ShortJournal	= {Ann Biomed Eng},
  URLDate	= {2019-03-09},
  Year		= {2010-10-01},
  Pages		= {3195-3209},
  Author	= {Kim, H. J. and Vignon-Clementel, I. E. and Coogan, J. S.
		  and Figueroa, C. A. and Jansen, K. E. and Taylor, C. A.}
}

@Article{	  klein-95,
  Author	= {Klein, R.},
  Journal	= {J. Comput. Phys.},
  Pages		= {213-237},
  Title		= {Semi-{I}mplicit {E}xtension of a {G}odunov-{T}ype {S}cheme
		  {B}ased on {L}ow {M}ach {N}umber {A}symptotics {I}:
		  {O}ne-{D}imensional {F}low},
  Volume	= {121},
  Year		= {1995}
}

###Article{	  klein-95,
  Author	= {Klein, R.},
  Journal	= {J. Comput. Phys.},
  Pages		= {213-237},
  Title		= {Semi-{I}mplicit {E}xtension of a {G}odunov-{T}ype {S}cheme
		  {B}ased on {L}ow {M}ach {N}umber {A}symptotics {I}:
		  {O}ne-{D}imensional {F}low},
  Volume	= {121},
  Year		= {1995}
}

@Article{	  klein2010elastix,
  Author	= {Klein, S. and Staring, M. and Murphy, K. and Viergever,
		  M.A. and Pluim, J.P.W.},
  Journal	= {Medical Imaging, IEEE Transactions on},
  Title		= {elastix: A Toolbox for Intensity-Based Medical Image
		  Registration},
  Year		= {2010},
  Month		= {Jan},
  Volume	= {29},
  Number	= {1},
  Pages		= {196-205},
  Keywords	= {biomedical MRI;computerised tomography;image
		  registration;medical computing;medical image
		  processing;public domain software;automated data
		  processing;command-line interface;computed
		  tomography;elastix;intensity-based medical image
		  registration;magnetic resonance
		  imaging;scripting;Application software;Biomedical
		  imaging;Cost function;Image processing;Image
		  registration;Image segmentation;MONOS devices;Open source
		  software;Optimization methods;Spatial
		  resolution;elastix;image registration;medical imaging;open
		  source;software;Diagnostic Imaging;Humans;Image Processing,
		  Computer-Assisted;Models, Biological;Normal
		  Distribution;Software},
  URL		= {elastix.isi.uu.nl},
  ISSN		= {0278-0062}
}

@Article{	  kleinstreuer-li-farber-07,
  Author	= {Kleinstreuer, C. and Li, Z. and Farber, M.A.},
  Journal	= {Annu Rev Biomed Eng.},
  Pages		= {169--204},
  Title		= {Fluid-structure interaction analyses of stented abdominal
		  aortic aneurysms},
  Volume	= {9},
  Year		= {2007}
}

###Article{	  kleinstreuer-li-farber-07,
  Author	= {Kleinstreuer, C. and Li, Z. and Farber, M.A.},
  Journal	= {Annu Rev Biomed Eng.},
  Pages		= {169--204},
  Title		= {Fluid-structure interaction analyses of stented abdominal
		  aortic aneurysms},
  Volume	= {9},
  Year		= {2007}
}

@Article{	  klepach2012mrc,
  Title		= {Growth and remodeling of the left ventricle: A case study
		  of myocardial infarction and surgical ventricular
		  restoration},
  Author	= {Klepach, D. and Lee, L. C. and Wenk, J. F. and Ratcliffe,
		  M. B. and Zohdi, T. I. and Navia, J. L. and Kassab, G. S.
		  and Kuhl, E. and Guccione, J. M.},
  Journal	= {Mechanics research communications},
  Year		= {2012},
  Pages		= {134--141},
  Volume	= {42},
  File		= {:klepach12.pdf:PDF},
  Publisher	= {Elsevier},
  timestamp	= {2014/11/27}
}

@InCollection{	  knabner-igler-00,
  Address	= {Berlin},
  Author	= {Knabner, P. and Igler, B.},
  BookTitle	= {Lectures on applied mathematics (Munich, 1999)},
  code		= {por24},
  Pages		= {157--175},
  Publisher	= {Springer},
  Title		= {Structural identification of nonlinear coefficient
		  functions in transport processes through porous media},
  Year		= {2000}
}

###InCollection{  knabner-igler-00,
  Address	= {Berlin},
  Author	= {Knabner, P. and Igler, B.},
  BookTitle	= {Lectures on applied mathematics (Munich, 1999)},
  code		= {por24},
  Pages		= {157--175},
  Publisher	= {Springer},
  Title		= {Structural identification of nonlinear coefficient
		  functions in transport processes through porous media},
  Year		= {2000}
}

@Unpublished{	  knoll-keyes,
  Author	= {Knoll, D.A. and Keyes, D.E.},
  Note		= {J. Comp. Phys. (in press)},
  Title		= {Jacobian-free {Newton-Krylov} methods: a surveys of
		  approaches and applications}
}

###Unpublished{	  knoll-keyes,
  Author	= {Knoll, D.A. and Keyes, D.E.},
  Note		= {J. Comp. Phys. (in press)},
  Title		= {Jacobian-free {Newton-Krylov} methods: a surveys of
		  approaches and applications}
}

@Article{	  koay2006unifying,
  Author	= {Cheng Guan Koay and Lin-Ching Chang and John D. Carew and
		  Carlo Pierpaoli and Peter J. Basser},
  Title		= {A unifying theoretical and algorithmic framework for least
		  squares methods of estimation in diffusion tensor imaging
		  },
  Journal	= {Journal of Magnetic Resonance },
  Year		= {2006},
  Volume	= {182},
  Pages		= {115 - 125},
  Number	= {1},
  DOI		= {http://dx.doi.org/10.1016/j.jmr.2006.06.020},
  ISSN		= {1090-7807}
}

@InProceedings{	  kobuchi-ito-ogiwara-88,
  Annote	= {blood, red cell, rouleaux},
  Author	= {Kobuchi, Y. andIto, T. and Ogiwara, A. },
  BookTitle	= {Biomathematics and related computational problems (Naples,
		  1987)},
  code		= {cel7},
  Pages		= {371-379},
  Publisher	= {Kluwer Acad. Publ., Dordrecht},
  Title		= {A model for rouleaux pattern formation of red blood cells.
		  Enumeration of absolutely stable patterns},
  Year		= {1988}
}

###InProceedings{ kobuchi-ito-ogiwara-88,
  Annote	= {blood, red cell, rouleaux},
  Author	= {Kobuchi, Y. andIto, T. and Ogiwara, A. },
  BookTitle	= {Biomathematics and related computational problems (Naples,
		  1987)},
  code		= {cel7},
  Pages		= {371-379},
  Publisher	= {Kluwer Acad. Publ., Dordrecht},
  Title		= {A model for rouleaux pattern formation of red blood cells.
		  Enumeration of absolutely stable patterns},
  Year		= {1988}
}

@Article{	  koh2007ajr,
  Title		= {Diffusion-Weighted {MRI} in the Body: Applications and
		  Challenges in Oncology},
  Author	= {Koh, Dow-Mu and Collins, David J.},
  Journal	= {American Journal of Roentgenology},
  Year		= {2007},
  Number	= {6},
  Pages		= {1622--1635},
  Volume	= {188},
  Abstract	= {ABSTRACT : OBJECTIVE. In this article, we present the
		  basic principles of diffusion-weighted imaging (DWI) that
		  can aid radiologists in the qualitative and quantitative
		  interpretation of DW images. However, a detailed discussion
		  of the physics of DWI is beyond the scope of this article.
		  A short discussion ensues on the technical aspects of
		  performing DWI in the body. The emerging applications of
		  DWI for tumor detection, tumor characterization,
		  distinguishing tumor tissue from nontumor tissue, and
		  monitoring and predicting treatment response are
		  highlighted. The challenges to widespread adoption of the
		  technique for cancer imaging in the body are
		  discussed.CONCLUSION. DWI derives its image contrast from
		  differences in the motion of water molecules between
		  tissues. Such imaging can be performed quickly without the
		  need for the administration of exogenous contrast medium.
		  The technique yields qualitative and quantitative
		  information that reflects changes at a cellular level and
		  provides unique insights about tumor cellularity and the
		  integrity of cell membranes. Recent advances enable the
		  technique to be widely applied for tumor evaluation in the
		  abdomen and pelvis and have led to the development of
		  whole-body DWI.},
  DOI		= {10.2214/AJR.06.1403},
  ISSN		= {0361-803X},
  owner		= {david},
  ShortTitle	= {Diffusion-Weighted {MRI} in the Body},
  timestamp	= {2015-05-28 17:38:10},
  URL		= {http://www.ajronline.org/doi/abs/10.2214/AJR.06.1403},
  URLDate	= {2015-05-28}
}

@Article{	  kolodziej-98,
  Author	= {Kolodziej, J.A. and Dzi\c{e}cielak, R. and Ko{\'n}zak, Z.},
  Journal	= {Transport in Porous Media},
  optpages	= {1-19},
  optvolume	= {32},
  Title		= {Permeability Tensor for Heterogeneous Porous Medium of
		  Fibre Type},
  Year		= {1998}
}

###Article{	  kolodziej-98,
  Author	= {Kolodziej, J.A. and Dzi\c{e}cielak, R. and Ko{\'n}zak, Z.},
  Journal	= {Transport in Porous Media},
  optpages	= {1-19},
  optvolume	= {32},
  Title		= {Permeability Tensor for Heterogeneous Porous Medium of
		  Fibre Type},
  Year		= {1998}
}

@Article{	  koltukluoglu_boundary_2018,
  langid	= {english},
  Title		= {Boundary Control in Computational Haemodynamics},
  Volume	= {847},
  ISSN		= {0022-1120, 1469-7645},
  URL		= {https://www.cambridge.org/core/journals/journal-of-fluid-mechanics/article/boundary-control-in-computational-haemodynamics/9E02FA65754C0EB987E4B01593FD1437},
  DOI		= {10.1017/jfm.2018.329},
  Abstract	= {In this work, a data assimilation method is proposed
		  following an optimise-then-discretise approach, and is
		  applied in the context of computational haemodynamics. The
		  methodology aims to make use of phase-contrast magnetic
		  resonance imaging to perform optimal flow control in
		  computational fluid dynamic simulations. Flow matching
		  between observations and model predictions is performed in
		  luminal regions, excluding near-wall areas, improving the
		  near-wall flow reconstruction to enhance the estimation of
		  related quantities such as wall shear stresses. The
		  proposed approach remarkably improves the flow field at the
		  aortic root and reveals a great potential for predicting
		  clinically relevant haemodynamic phenomenology. This work
		  presents model validation against an analytical solution
		  using the standard 3-D HagenâPoiseuille flow, and
		  validation with real data involving the flow control
		  problem in a glass replica of a human aorta imaged with a
		  3T magnetic resonance scanner. In vitro experiments consist
		  of both a numerically generated reference flow solution,
		  which is considered as the ground truth, as well as real
		  flow MRI data obtained from phase-contrast flow
		  acquisitions. The validation against the in vitro flow MRI
		  experiments is performed for different flow regimes and
		  model parameters including different mesh refinements.},
  JournalTitle	= {Journal of Fluid Mechanics},
  URLDate	= {2019-03-08},
  Year		= {2018-07},
  Pages		= {329-364},
  Author	= {Koltukluo{\u{g}}lu, Taha S. and Blanco, Pablo J.}
}

@PhdThesis{	  koltukluoglu_fourier_2019,
  langid	= {english},
  Location	= {{Zürich, Switzerland}},
  Title		= {Fourier {{Spectral Data Assimilation}} in {{Computational
		  Haemodynamics}}},
  Institution	= {{ETH Zürich}},
  Year		= {2019},
  Author	= {Koltukluo{\u{g}}lu, TAHA S.}
}

@Article{	  komamura1993ajp,
  Title		= {Exhaustion of Frank-Starling mechanism in conscious dogs
		  with heart failure},
  Author	= {Komamura, K. and Shannon, R. P. and Ihara, T. and Shen, Y.
		  T. and Mirsky, I. and Bishop, S. P. and Vatner, S. F.},
  Journal	= {American Journal of Physiology - Heart and Circulatory
		  Physiology},
  Year		= {1993},
  Number	= {4},
  Pages		= {H1119--H1131},
  Volume	= {265},
  Abstract	= {The goal of this study was to elucidate the ability of the
		  left ventricle to accommodate an increase in preload
		  (Frank-Starling mechanism) in the presence of congestive
		  heart failure (CHF) but in the absence of the complicating
		  effects of hypertrophy and fibrosis. To accomplish this,
		  the effects of volume loading were examined in eight
		  conscious dogs during the control state and after 3 wk of
		  right ventricular pacing (240 beats/min). CHF increased
		  heart rate (by 16 +/- 5 from 92 +/- 5 beats/min), left
		  ventricular (LV) end-diastolic pressure (by 17 +/- 2 from
		  10 +/- 1 mmHg), and LV end-diastolic volume (EDV; by 23 +/-
		  4 from 57 +/- 3 ml). Despite reduced LV ejection fraction
		  (from 54 +/- 3 to 31 +/- 3\%), there was no significant
		  change in cardiac output (2.5 +/- 0.3 l/min) compared with
		  control (2.7 +/- 0.2 l/min). Stroke volume was preserved
		  (control 19 +/- 2 ml; CHF 18 +/- 2 ml) at a constant heart
		  rate by a shift to the right in the relationship between LV
		  stroke volume and EDV, indicating the importance of chronic
		  ventricular dilatation in maintaining pump performance. In
		  the control state, acute volume load increased LV EDV (by
		  17 +/- 2 ml) and stroke volume (by 11 +/- 2 ml), whereas in
		  CHF it did not increase LV EDV or stroke volume. Scanning
		  electron microscopy revealed areas of reduced collagen
		  weave pattern surrounding myofibers. Myocyte
		  cross-sectional area by transmission electron microscopy
		  was significantly reduced, and there were multiple
		  electron-dense expansions of the Z lines with disruption of
		  the normal lateral sarcomere alignment. These morphological
		  findings suggest that chronic ventricular dilatation
		  utilized in CHF results from myocyte stretch and
		  morphological intracellular rearrangement. Furthermore, the
		  failing heart cannot further augment stroke volume by
		  acutely increasing EDV in CHF, suggesting that the
		  Frank-Starling reserve is essentially exhausted.},
  File		= {komamura93.pdf:komamura93.pdf:PDF},
  ISSN		= {0363-6135},
  Publisher	= {American Physiological Society},
  timestamp	= {2015/09/17}
}

@Article{	  konstam2011jacc,
  Title		= {Left ventricular remodeling in heart failure: current
		  concepts in clinical significance and assessment},
  Author	= {Konstam, Marvin A and Kramer, Daniel G and Patel, Ayan R
		  and Maron, Martin S and Udelson, James E},
  Journal	= {JACC: Cardiovascular Imaging},
  Year		= {2011},
  Number	= {1},
  Pages		= {98--108},
  Volume	= {4},
  File		= {:konstam11.pdf:PDF},
  Publisher	= {Journal of the American College of Cardiology},
  timestamp	= {2014/09/17}
}

@Article{	  korakianitis-shi-06,
  Title		= {A concentrated parameter model for the human
		  cardiovascular system including heart valve dynamics and
		  atrioventricular interaction},
  Author	= {Korakianitis, T. and Shi, Y.},
  Year		= {2006},
  Journal	= {Medical Engineering \& Physics},
  Volume	= {28},
  Pages		= {613--628}
}

###Article{	  korakianitis-shi-06,
  Title		= {A concentrated parameter model for the human
		  cardiovascular system including heart valve dynamics and
		  atrioventricular interaction},
  Author	= {Korakianitis, T. and Shi, Y.},
  Year		= {2006},
  Journal	= {Medical Engineering \& Physics},
  Volume	= {28},
  Pages		= {613--628}
}

@Article{	  koutsourelakis2009accurate,
  Title		= {Accurate uncertainty quantification using inaccurate
		  computational models},
  Author	= {Koutsourelakis, Phaedon-Stelios},
  Journal	= {SIAM Journal on Scientific Computing},
  Volume	= {31},
  Number	= {5},
  Pages		= {3274--3300},
  Year		= {2009},
  Publisher	= {SIAM}
}

@Article{	  kozlov-89,
  Author	= {Kozlov, S.},
  Journal	= {Russian Math. Surveys},
  Pages		= {79-120},
  Title		= {Geometric aspects of homogenization},
  Volume	= {40},
  Year		= {1989}
}

###Article{	  kozlov-89,
  Author	= {Kozlov, S.},
  Journal	= {Russian Math. Surveys},
  Pages		= {79-120},
  Title		= {Geometric aspects of homogenization},
  Volume	= {40},
  Year		= {1989}
}

@Article{	  krittian2012finite,
  Title		= {A finite-element approach to the direct computation of
		  relative cardiovascular pressure from time-resolved {MR}
		  velocity data},
  Author	= {Krittian, Sebastian BS and Lamata, Pablo and Michler,
		  Christian and Nordsletten, David A and Bock, Jelena and
		  Bradley, Chris P and Pitcher, Alex and Kilner, Philip J and
		  Markl, Michael and Smith, Nic P},
  Journal	= {Medical image analysis},
  Volume	= {16},
  Number	= {5},
  Pages		= {1029--1037},
  Year		= {2012},
  Publisher	= {Elsevier}
}

###Article{	  krittian2012finite,
  Title		= {A finite-element approach to the direct computation of
		  relative cardiovascular pressure from time-resolved {MR}
		  velocity data},
  Author	= {Krittian, Sebastian BS and Lamata, Pablo and Michler,
		  Christian and Nordsletten, David A and Bock, Jelena and
		  Bradley, Chris P and Pitcher, Alex and Kilner, Philip J and
		  Markl, Michael and Smith, Nic P},
  Journal	= {Medical image analysis},
  Volume	= {16},
  Number	= {5},
  Pages		= {1029--1037},
  Year		= {2012},
  Publisher	= {Elsevier}
}

@Article{	  krittian_finite-element_2012,
  Title		= {A Finite-Element Approach to the Direct Computation of
		  Relative Cardiovascular Pressure from Time-Resolved {{MR}}
		  Velocity Data},
  Volume	= {16},
  ISSN		= {1361-8415},
  URL		= {http://www.sciencedirect.com/science/article/pii/S1361841512000497},
  DOI		= {10.1016/j.media.2012.04.003},
  Abstract	= {The evaluation of cardiovascular velocities, their changes
		  through the cardiac cycle and the consequent pressure
		  gradients has the capacity to improve understanding of
		  subject-specific blood flow in relation to adjacent soft
		  tissue movements. Magnetic resonance time-resolved 3D phase
		  contrast velocity acquisitions (4D flow) represent an
		  emerging technology capable of measuring the cyclic changes
		  of large scale, multi-directional, subject-specific blood
		  flow. A subsequent evaluation of pressure differences in
		  enclosed vascular compartments is a further step which is
		  currently not directly available from such data. The focus
		  of this work is to address this deficiency through the
		  development of a novel simulation workflow for the direct
		  computation of relative cardiovascular pressure fields.
		  Input information is provided by enhanced 4D flow data and
		  derived MR domain masking. The underlying methodology shows
		  numerical advantages in terms of robustness, global domain
		  composition, the isolation of local fluid compartments and
		  a treatment of boundary conditions. This approach is
		  demonstrated across a range of validation examples which
		  are compared with analytic solutions. Four subject-specific
		  test cases are subsequently run, showing good agreement
		  with previously published calculations of intra-vascular
		  pressure differences. The computational engine presented in
		  this work contributes to non-invasive access to relative
		  pressure fields, incorporates the effects of both blood
		  flow acceleration and viscous dissipation, and enables
		  enhanced evaluation of cardiovascular blood flow.},
  Number	= {5},
  JournalTitle	= {Medical Image Analysis},
  ShortJournal	= {Medical Image Analysis},
  URLDate	= {2016-10-08},
  Year		= {2012-07},
  Pages		= {1029-1037},
  Author	= {Krittian, Sebastian B. S. and Lamata, Pablo and Michler,
		  Christian and Nordsletten, David A. and Bock, Jelena and
		  Bradley, Chris P. and Pitcher, Alex and Kilner, Philip J.
		  and Markl, Michael and Smith, Nic P.}
}

@Article{	  kroon2007jtb,
  Title		= {A model for saccular cerebral aneurysm growth by collagen
		  fibre remodelling },
  Author	= {Martin Kroon and Gerhard A. Holzapfel},
  Journal	= {Journal of Theoretical Biology },
  Year		= {2007},
  Number	= {4},
  Pages		= {775 - 787},
  Volume	= {247},
  Abstract	= {The first structural model for saccular cerebral aneurysm
		  growth is proposed. It is assumed that the development of
		  the aneurysm is accompanied by a loss of the media, and
		  that only collagen fibres provide load-bearing capacity to
		  the aneurysm wall. The aneurysm is modelled as an
		  axisymmetric multi-layered membrane, exposed to an
		  inflation pressure. Each layer is characterized by an
		  orientation angle, which changes between different layers.
		  The collagen fibres and fibroblasts within a specific layer
		  are perfectly aligned. The growth and the morphological
		  changes of the aneurysm are accomplished by the turnover of
		  collagen. Fibroblasts are responsible for collagen
		  production, and the related deformations are assumed to
		  govern the collagen production rate. There are four key
		  parameters in the model: a normalized pressure, the number
		  of layers in the wall, an exponent in the collagen mass
		  production rate law, and the pre-stretch under which the
		  collagen is deposited. The influence of the model
		  parameters on the aneurysmal response is investigated, and
		  a stability analysis is performed. The model is able to
		  predict clinical observations and mechanical test results,
		  for example, in terms of predicted aneurysm size, shape,
		  wall stress and wall thickness. },
  DOI		= {http://dx.doi.org/10.1016/j.jtbi.2007.03.009},
  File		= {kroon07.pdf:kroon07.pdf:PDF},
  ISSN		= {0022-5193},
  Keywords	= {Aneurysm},
  timestamp	= {2015/09/22},
  URL		= {http://www.sciencedirect.com/science/article/pii/S0022519307001142}
}

@Article{	  kroon2009bmm,
  Title		= {Computational modeling of volumetric soft tissue growth:
		  application to the cardiac left ventricle},
  Author	= {Kroon, Wilco and Delhaas, Tammo and Arts, Theo and
		  Bovendeerd, Peter},
  Journal	= {Biomechanics and Modeling in Mechanobiology},
  Year		= {2009},
  Number	= {4},
  Pages		= {301-309},
  Volume	= {8},
  DOI		= {10.1007/s10237-008-0136-z},
  File		= {kroon09b.pdf:kroon09b.pdf:PDF},
  ISSN		= {1617-7959},
  Keywords	= {Cardiac mechanics; Remodeling; Adaptation; Finite element
		  method},
  Language	= {English},
  Publisher	= {Springer-Verlag},
  timestamp	= {2015/09/23},
  URL		= {http://dx.doi.org/10.1007/s10237-008-0136-z}
}

@Article{	  kroon2009jtb,
  Title		= {A theoretical model for fibroblast-controlled growth of
		  saccular cerebral aneurysms },
  Author	= {Martin Kroon and Gerhard A. Holzapfel},
  Journal	= {Journal of Theoretical Biology },
  Year		= {2009},
  Number	= {1},
  Pages		= {73 - 83},
  Volume	= {257},
  Abstract	= {A new theoretical model for the growth of saccular
		  cerebral aneurysms is proposed by extending the recent
		  constitutive framework of Kroon and Holzapfel [2007a. A
		  model for saccular cerebral aneurysm growth by collagen
		  fibre remodelling. J. Theor. Biol. 247, 775?787]. The
		  continuous turnover of collagen is taken to be the driving
		  mechanism in aneurysmal growth. The collagen production
		  rate depends on the magnitude of the cyclic deformation of
		  fibroblasts, caused by the pulsating blood pressure during
		  the cardiac cycle. The volume density of fibroblasts in the
		  aneurysmal tissue is taken to be constant throughout the
		  growth process. The growth model is assessed by considering
		  the inflation of an axisymmetric membranous piece of
		  aneurysmal tissue, with material characteristics
		  representative of a cerebral aneurysm. The diastolic and
		  systolic states of the aneurysm are computed, together with
		  its load-free state. It turns out that the value of
		  collagen pre-stretch, that determines growth speed and
		  stability of the aneurysm, is of pivotal importance. The
		  model is able to predict aneurysms with typical berry-like
		  shapes observed clinically, and the predicted wall stresses
		  correlate well with the experimentally obtained ultimate
		  stresses of this type of tissue. The model predicts that
		  aneurysms should fail when reaching a size of about 1.2?3.6
		  mm, which is smaller than what has been clinically
		  observed. With some refinements, the model may, however, be
		  used to predict future growth of diagnosed aneurysms. },
  DOI		= {http://dx.doi.org/10.1016/j.jtbi.2008.10.021},
  File		= {kroon09.pdf:kroon09.pdf:PDF},
  ISSN		= {0022-5193},
  Keywords	= {Aneurysm},
  timestamp	= {2015/09/22},
  URL		= {http://www.sciencedirect.com/science/article/pii/S0022519308005602}
}

@Article{	  kroon2009mia,
  Title		= {Computational analysis of the myocardial structure:
		  Adaptation of cardiac myofiber orientations through
		  deformation },
  Author	= {Wilco Kroon and Tammo Delhaas and Peter Bovendeerd and
		  Theo Arts},
  Journal	= {Medical Image Analysis },
  Year		= {2009},
  Note		= {Includes Special Section on Functional Imaging and
		  Modelling of the Heart },
  Number	= {2},
  Pages		= {346 - 353},
  Volume	= {13},
  Abstract	= {Deformation and structure of the cardiac wall can be
		  assessed non-invasively by imaging techniques such as
		  magnetic resonance imaging. Understanding the
		  (patho-)physiology that underlies the observed deformation
		  and structure is critical for clinical diagnosis. However,
		  much about the genesis of deformation and structure is
		  unknown. In the present computational model study, we
		  hypothesize that myofibers locally adapt their orientation
		  to achieve minimal fiber-cross fiber shear strain during
		  the cardiac cycle. This hypothesis was tested in a 3D
		  finite element model of left ventricular (LV) mechanics by
		  computation of tissue deformations and subsequent
		  adaptation of initial myofiber orientations towards those
		  in the deformed tissue. As a consequence of adaptation,
		  local tissue peak stress, strain during ejection and stroke
		  work density were all found to increase by at least 10%, as
		  well as to become 50% more homogeneous throughout the wall.
		  Global \{LV\} work (peak systolic pressure, stroke volume
		  and stroke work) increased significantly as well (&gt;9%).
		  The model-predicted myofiber orientations were found to be
		  similar to those in experiments. To the best of our
		  knowledge the presented model is the first that is able to
		  simultaneously predict a realistic myocardial structure as
		  well as to account for the experimentally observed
		  homogeneity in local mechanics. },
  DOI		= {http://dx.doi.org/10.1016/j.media.2008.06.015},
  File		= {kroon09a.pdf:kroon09a.pdf:PDF},
  ISSN		= {1361-8415},
  Keywords	= {Cardiac mechanics},
  timestamp	= {2015/09/22},
  URL		= {http://www.sciencedirect.com/science/article/pii/S1361841508000686}
}

@Article{	  kroon2010jmps,
  Title		= {A continuum mechanics framework and a constitutive model
		  for remodelling of collagen gels and collagenous tissues },
  Author	= {Martin Kroon},
  Journal	= {Journal of the Mechanics and Physics of Solids },
  Year		= {2010},
  Number	= {6},
  Pages		= {918 - 933},
  Volume	= {58},
  Abstract	= {Collagen is a very important protein of the human body and
		  is responsible for the structural stability of many body
		  components. Furthermore, collagen fibre networks are able
		  to grow and remodel themselves, which enables them to
		  adjust to varying physiological conditions. This
		  remodelling is accomplished by fibre-producing cells, such
		  as fibroblasts. The ability to adjust to new physiological
		  conditions is very important, for example in wound healing.
		  In the present paper, a theoretical framework for modelling
		  collagenous tissues and collagen gels is proposed.
		  Continuum mechanics is employed to describe the kinematics
		  of the collagen, and affine deformations of fibres are
		  assumed. Biological soft tissues can be approximated as
		  being hyperelastic, and the constitutive model for the
		  collagen fabric is therefore formulated in terms of a
		  strain energy function. This strain energy function
		  includes a density function that describes the distribution
		  of the collagen fibre orientation. The density function
		  evolves according to an evolution law, where fibres tend to
		  reorient towards the direction of maximum Cauchy stress.
		  The remodelling of the collagen network is also assumed to
		  include a pre-stretching of collagen fibres, accomplished
		  by fibroblasts. The theoretical framework is applied to
		  experiments performed on collagen gels, where gels were
		  exposed to remodelling under both biaxial and uniaxial
		  constraints. The proposed model was able to predict both
		  the resulting collagen distribution and the resulting
		  stress?strain relationships obtained for the remodelled
		  collagen gels. The influence of the most important model
		  parameters is demonstrated, and it appears that there is a
		  fairly unique set of model parameters that gives an optimal
		  fit to the experimental data. },
  DOI		= {http://dx.doi.org/10.1016/j.jmps.2010.03.005},
  ISSN		= {0022-5096},
  Keywords	= {Collagen},
  timestamp	= {2015/09/22},
  URL		= {http://www.sciencedirect.com/science/article/pii/S0022509610000530}
}

@Article{	  kruzhkov-70,
  Author	= {Kruzhkov, S.},
  Journal	= { Mat. Sbornik},
  Note		= {Engl. Transl. {\em Math. USSR Sb.} {\bf 10} (1970),
		  217--273},
  Pages		= {228-255},
  Title		= {First order quasilinear equations with several space
		  variables},
  Volume	= {123},
  Year		= {1970}
}

###Article{	  kruzhkov-70,
  Author	= {Kruzhkov, S.},
  Journal	= { Mat. Sbornik},
  Note		= {Engl. Transl. {\em Math. USSR Sb.} {\bf 10} (1970),
		  217--273},
  Pages		= {228-255},
  Title		= {First order quasilinear equations with several space
		  variables},
  Volume	= {123},
  Year		= {1970}
}

@Article{	  ku_blood_1997,
  Title		= {Blood Flow in Arteries},
  Author	= {Ku, David N.},
  Year		= {1997},
  Volume	= {29},
  Pages		= {399--434},
  Journal	= {Annu Rev Fluid Mech},
  Number	= {1}
}

###Article{	  ku_blood_1997,
  Title		= {Blood Flow in Arteries},
  Volume	= {29},
  URL		= {http://www.annualreviews.org/doi/abs/10.1146/annurev.fluid.29.1.399},
  Number	= {1},
  JournalTitle	= {Annual review of fluid mechanics},
  URLDate	= {2017-10-12},
  Year		= {1997},
  Pages		= {399--434},
  Author	= {Ku, David N.}
}

@Article{	  kuethe1989physrev,
  Title		= {Measuring distributions of diffusivity in turbulent fluids
		  with magnetic-resonance imaging},
  Author	= {Kuethe, Dean O.},
  Journal	= {Physical Review A},
  Year		= {1989},
  Month		= oct,
  Number	= {8},
  Pages		= {4542--4551},
  Volume	= {40},
  Abstract	= {This paper describes a method for measuring distributions
		  of turbulent diffusivity in less than an hour. The
		  measurement is rapid enough to aid in designing devices
		  that make use of the turbulent diffusion of mass, heat, or
		  momentum. It may be useful as a measurement of the degree
		  of turbulence in the blood of patients with cardiovascular
		  diseases. It consists of subtracting the natural logarithms
		  of the pixel values of a magnetic-resonance image of
		  turbulent fluid from those of stationary fluid. The pixel
		  values of the resulting image are multiplied by a constant
		  to yield diffusivities. The accuracy of the measurement is
		  within the range of diffusivities (1) upstream as far as
		  the speed of the fluid multiplied by the time TE between
		  exciting the spin system and recording the signal, (2) in
		  the direction of the gradient of diffusivity as far as TE
		  multiplied by 5 times the gradient of the diffusivity, and
		  (3) in the direction of the phase-encoding magnetic field
		  gradient as far as the negative of the component of
		  velocity in the phase-encoding direction multiplied by the
		  time between phase encoding and recording the signal. In a
		  32{\texttimes}32-cm2 image of a jet of water with a nozzle
		  velocity of 4.5 m s-1 and Reynolds number of 18 000, made
		  with a TE of 15 ms, the distance of (1) ranged from 0 to
		  6.7 cm, of (2) ranged from 0 to 0.3 cm, and of (3) ranged
		  from 0 to 0.4 cm. These distances are bounds; the actual
		  spatial misregistration was less. The signal-to-noise ratio
		  ranged from 10 to 15 for diffusivities from 0.02 to 0.7 cm2
		  s-1. .AE},
  DOI		= {10.1103/PhysRevA.40.4542},
  owner		= {david},
  timestamp	= {2015-05-12 15:34:08},
  URL		= {http://link.aps.org/doi/10.1103/PhysRevA.40.4542},
  URLDate	= {2015-05-12}
}

@Article{	  kung2011jmri,
  Title		= {The presence of two local myocardial sheet populations
		  confirmed by diffusion tensor MRI and histological
		  validation.},
  Author	= {Kung, Geoffrey L. and Nguyen, Tom C. and Itoh, Aki and
		  Skare, Stefan and Ingels, Jr, Neil B and Miller, D Craig
		  and Ennis, Daniel B.},
  Journal	= {J Magn Reson Imaging},
  Year		= {2011},
  Month		= {Nov},
  Number	= {5},
  Pages		= {1080--1091},
  Volume	= {34},
  Abstract	= {To establish the correspondence between the two
		  histologically observable and diffusion tensor MRI (DTMRI)
		  measurements of myolaminae orientation for the first time
		  and show that single myolaminar orientations observed in
		  local histology may result from histological artifact.DTMRI
		  was performed on six sheep left ventricles (LV), then
		  corresponding direct histological transmural measurements
		  were made within the anterobasal and lateral-equatorial LV.
		  Secondary and tertiary eigenvectors of the diffusion tensor
		  were compared with each of the two locally observable sheet
		  orientations from histology. Diffusion tensor invariants
		  were calculated to compare differences in microstructural
		  diffusive properties between histological locations with
		  one observable sheet population and two observable sheet
		  populations.Mean difference Â± 1SD between DTMRI and
		  histology measured sheet angles was 8Â° Â± 27Â°. Diffusion
		  tensor invariants showed no significant differences between
		  histological locations with one observable sheet population
		  and locations with two observable sheet populations.DTMRI
		  measurements of myolaminae orientations derived from the
		  secondary and tertiary eigenvectors correspond to each of
		  the two local myolaminae orientations observed in
		  histology. Two local sheet populations may exist throughout
		  LV myocardium, and one local sheet population observed in
		  histology may be a result of preparation artifact.},
  DOI		= {10.1002/jmri.22725},
  Institution	= {Department of Radiological Sciences, University of
		  California, Los Angeles, California 90024, USA.},
  Keywords	= {Algorithms; Animals; Artifacts; Diffusion Magnetic
		  Resonance Imaging, methods; Heart Ventricles, pathology;
		  Image Processing, Computer-Assisted; Male; Models,
		  Anatomic; Models, Statistical; Myocardium, pathology;
		  Reproducibility of Results; Sheep},
  Language	= {eng},
  medline-pst	= {ppublish},
  owner		= {stoeckc},
  pmid		= {21932362},
  timestamp	= {2015.07.24},
  URL		= {http://dx.doi.org/10.1002/jmri.22725}
}

@Article{	  kung_predictive_2013,
  Title		= {Predictive Modeling of the Virtual {{Hemi}}-{{Fontan}}
		  Operation for Second Stage Single Ventricle Palliation:
		  {{Two}} Patient-Specific Cases},
  Volume	= {46},
  ISSN		= {0021-9290},
  URL		= {http://www.sciencedirect.com/science/article/pii/S0021929012006306},
  DOI		= {10.1016/j.jbiomech.2012.10.023},
  ShortTitle	= {Predictive Modeling of the Virtual {{Hemi}}-{{Fontan}}
		  Operation for Second Stage Single Ventricle Palliation},
  Abstract	= {Single ventricle hearts are congenital cardiovascular
		  defects in which the heart has only one functional pumping
		  chamber. The treatment for these conditions typically
		  requires a three-staged operative process where Stage 1 is
		  typically achieved by a shunt between the systemic and
		  pulmonary arteries, and Stage 2 by connecting the superior
		  venous return to the pulmonary circulation. Surgically, the
		  Stage 2 circulation can be achieved through a procedure
		  called the Hemi-Fontan, which reconstructs the right atrium
		  and pulmonary artery to allow for an enlarged confluence
		  with the superior vena cava. Based on pre-operative data
		  obtained from two patients prior to Stage 2 surgery, we
		  developed two patient-specific multi-scale computational
		  models, each including the 3D geometrical model of the
		  surgical junction constructed from magnetic resonance
		  imaging, and a closed-loop systemic lumped-parameter
		  network derived from clinical measurements. âVirtualâ
		  Hemi-Fontan surgery was performed on the 3D model with
		  guidance from clinical surgeons, and a corresponding
		  multi-scale simulation predicts the patient's
		  post-operative hemodynamic and physiologic conditions. For
		  each patient, a post-operative active scenario with an
		  increase in the heart rate (HR) and a decrease in the
		  pulmonary and systemic vascular resistance (PVR and SVR)
		  was also performed. Results between the baseline and this
		  âactiveâ state were compared to evaluate the
		  hemodynamic and physiologic implications of changing
		  conditions. Simulation results revealed a characteristic
		  swirling vortex in the Hemi-Fontan in both patients, with
		  flow hugging the wall along the SVC to Hemi-Fontan
		  confluence. One patient model had higher levels of
		  swirling, recirculation, and flow stagnation. However, in
		  both models, the power loss within the surgical junction
		  was less than 13\% of the total power loss in the pulmonary
		  circulation, and less than 2\% of the total ventricular
		  power. This implies little impact of the surgical junction
		  geometry on the SVC pressure, cardiac output, and other
		  systemic parameters. In contrast, varying HR, PVR, and SVR
		  led to significant changes in theses clinically relevant
		  global parameters. Adopting a work-flow of customized
		  virtual planning of the Hemi-Fontan procedure with
		  patient-specific data, this study demonstrates the ability
		  of multi-scale modeling to reproduce patient specific flow
		  conditions under differing physiological states. Results
		  demonstrate that the same operation performed in two
		  different patients can lead to different hemodynamic
		  characteristics, and that modeling can be used to uncover
		  physiologic changes associated with different clinical
		  conditions.},
  Number	= {2},
  JournalTitle	= {Journal of Biomechanics},
  ShortJournal	= {Journal of Biomechanics},
  Series	= {Special {{Issue}}: {{Biofluid Mechanics}}},
  URLDate	= {2019-03-09},
  Year		= {2013-01-18},
  Pages		= {423-429},
  Author	= {Kung, Ethan and Baretta, Alessia and Baker, Catriona and
		  Arbia, Gregory and Biglino, Giovanni and Corsini, Chiara
		  and Schievano, Silvia and Vignon-Clementel, Irene E. and
		  Dubini, Gabriele and Pennati, Giancarlo and Taylor, Andrew
		  and Dorfman, Adam and Hlavacek, Anthony M. and Marsden,
		  Alison L. and Hsia, Tain-Yen and Migliavacca, Francesco}
}

@Article{	  kunisch-volkwein-fluids-03,
  jstor_articletype={research-article},
  Title		= {Galerkin Proper Orthogonal Decomposition Methods for a
		  General Equation in Fluid Dynamics},
  Author	= {Kunisch, K. and Volkwein, S.},
  Journal	= {SIAM Journal on Numerical Analysis},
  jstor_issuetitle={},
  Volume	= {40},
  Number	= {2},
  jstor_formatteddate={2003},
  Pages		= {pp. 492-515},
  ISSN		= {00361429},
  Abstract	= {Error estimates for Galerkin proper orthogonal
		  decomposition (POD) methods for nonlinear parabolic systems
		  arising in fluid dynamics are proved. For the time
		  integration the backward Euler scheme is considered. The
		  asymptotic estimates involve the singular values of the POD
		  snapshot set and the grid-structure of the time
		  discretization as well as the snapshot locations.},
  Language	= {English},
  Year		= {2003},
  Publisher	= {Society for Industrial and Applied Mathematics},
  copyright	= {Copyright Â© 2003 Society for Industrial and Applied
		  Mathematics}
}

###Article{	  kunisch-volkwein-fluids-03,
  jstor_articletype={research-article},
  Title		= {Galerkin Proper Orthogonal Decomposition Methods for a
		  General Equation in Fluid Dynamics},
  Author	= {Kunisch, K. and Volkwein, S.},
  Journal	= {SIAM Journal on Numerical Analysis},
  jstor_issuetitle={},
  Volume	= {40},
  Number	= {2},
  jstor_formatteddate={2003},
  Pages		= {pp. 492-515},
  URL		= {http://www.jstor.org/stable/4100966},
  ISSN		= {00361429},
  Abstract	= {Error estimates for Galerkin proper orthogonal
		  decomposition (POD) methods for nonlinear parabolic systems
		  arising in fluid dynamics are proved. For the time
		  integration the backward Euler scheme is considered. The
		  asymptotic estimates involve the singular values of the POD
		  snapshot set and the grid-structure of the time
		  discretization as well as the snapshot locations.},
  Language	= {English},
  Year		= {2003},
  Publisher	= {Society for Industrial and Applied Mathematics},
  copyright	= {Copyright Â© 2003 Society for Industrial and Applied
		  Mathematics}
}

@Article{	  kuttler-wall-08,
  Author	= {K\"uttler, U. and Wall, W.A.},
  Journal	= {Comput. Mech.},
  Number	= {1},
  Pages		= {61--72},
  Title		= {Fixed-point fluid-structure interaction solvers with
		  dynamic relaxation},
  Volume	= {43},
  Year		= {2008}
}

###Article{	  kuttler-wall-08,
  Author	= {K\"uttler, U. and Wall, W.A.},
  Journal	= {Comput. Mech.},
  Number	= {1},
  Pages		= {61--72},
  Title		= {Fixed-point fluid-structure interaction solvers with
		  dynamic relaxation},
  Volume	= {43},
  Year		= {2008}
}

@Article{	  kuwabara-59,
  Author	= {Kuwabara, S.},
  Journal	= {J. Phys. Soc. Japan},
  Pages		= {527-532},
  Title		= {The force experienced by randomly distributed parallel
		  circilar cylinders or spheres in a viscous flow at small
		  Reynolds number},
  Volume	= {14},
  Year		= {1959}
}

###Article{	  kuwabara-59,
  Author	= {Kuwabara, S.},
  Journal	= {J. Phys. Soc. Japan},
  Pages		= {527-532},
  Title		= {The force experienced by randomly distributed parallel
		  circilar cylinders or spheres in a viscous flow at small
		  Reynolds number},
  Volume	= {14},
  Year		= {1959}
}

@Article{	  labrosse-etal-09,
  Author	= {Labrosse, M.R. and Beller, C.J. and Mesana, T. and Veinot,
		  J.P.},
  Title		= {Mechanical behavior of human aortas: Experiments, material
		  constants and 3-D finite element modeling including
		  residual stress.},
  Journal	= {J Biomech},
  Volume	= {42},
  Year		= {2009},
  Number	= {8},
  Pages		= {996-1004},
  pubmedid	= {19345356},
  ISSN		= {1873-2380}
}

###Article{	  labrosse-etal-09,
  Author	= {Labrosse, M.R. and Beller, C.J. and Mesana, T. and Veinot,
		  J.P.},
  Title		= {Mechanical behavior of human aortas: Experiments, material
		  constants and 3-D finite element modeling including
		  residual stress.},
  Journal	= {J Biomech},
  Volume	= {42},
  Year		= {2009},
  Number	= {8},
  Pages		= {996-1004},
  URL		= {http://www.biomedsearch.com/nih/Mechanical-behavior-human-aortas-Experiments/19345356.html},
  pubmedid	= {19345356},
  ISSN		= {1873-2380}
}

@Article{	  labrosse2006geometric,
  Title		= {Geometric modeling of functional trileaflet aortic valves:
		  development and clinical applications},
  Author	= {Labrosse, M. and Beller, C. and Robicsek, F. and
		  Thubrikar, M.},
  Journal	= {Journal of biomechanics},
  Volume	= {39},
  Number	= {14},
  Pages		= {2665--2672},
  Year		= {2006},
  Publisher	= {Elsevier}
}

@Article{	  lacamera-ziegler-kozarek-92,
  Author	= {LaCamera, A.F. and Ziegler, D.P. and Kozarek, R.L.},
  Journal	= {Light Metals},
  Pages		= {1179-1186},
  Title		= {Magnetohydrodynamics in the {Hall-H{\'e}roult} process, an
		  overview},
  Year		= {1992}
}

###Article{	  lacamera-ziegler-kozarek-92,
  Author	= {LaCamera, A.F. and Ziegler, D.P. and Kozarek, R.L.},
  Journal	= {Light Metals},
  Pages		= {1179-1186},
  Title		= {Magnetohydrodynamics in the {Hall-H{\'e}roult} process, an
		  overview},
  Year		= {1992}
}

@Article{	  ladisa2011computational,
  Title		= {Computational simulations for aortic coarctation:
		  representative results from a sampling of patients.},
  Author	= {Ladisa, J.F. and Alberto, F.C. and Vignon-Clementel, I.E.
		  and Jin, K.H. and Xiao, N. and Ellwein, L.M. and Chan, F.P.
		  and Feinstein, J.A. and Taylor, C.A. and others},
  Journal	= {Journal of biomechanical engineering},
  Volume	= {133},
  Number	= {9},
  Pages		= {091008},
  Year		= {2011}
}

###Article{	  ladisa2011computational,
  Title		= {Computational simulations for aortic coarctation:
		  representative results from a sampling of patients.},
  Author	= {Ladisa, J.F. and Alberto, F.C. and Vignon-Clementel, I.E.
		  and Jin, K.H. and Xiao, N. and Ellwein, L.M. and Chan, F.P.
		  and Feinstein, J.A. and Taylor, C.A. and others},
  Journal	= {Journal of biomechanical engineering},
  Volume	= {133},
  Number	= {9},
  Pages		= {091008},
  Year		= {2011}
}

@Book{		  ladyzenskaya-68,
  Author	= {Ladyzenskaja, O.A. and Solonnikov, V.A. and Ural'ceva,
		  N.N.},
  Publisher	= {American Mathematical Society},
  Series	= {Translations of Mathematical Monographs},
  Title		= {Linear and Quasilinear Equations of parabolic type},
  Volume	= {23},
  Year		= {1968}
}

###Book{	  ladyzenskaya-68,
  Author	= {Ladyzenskaja, O.A. and Solonnikov, V.A. and Ural'ceva,
		  N.N.},
  Publisher	= {American Mathematical Society},
  Series	= {Translations of Mathematical Monographs},
  Title		= {Linear and Quasilinear Equations of parabolic type},
  Volume	= {23},
  Year		= {1968}
}

@Article{	  laflamme2002circ,
  Title		= {Evidence for Cardiomyocyte Repopulation by Extracardiac
		  Progenitors in Transplanted Human Hearts},
  Author	= {Laflamme, Michael A. and Myerson, David and Saffitz,
		  Jeffrey E. and Murry, Charles E.},
  Journal	= {Circulation Research},
  Year		= {2002},
  Number	= {6},
  Pages		= {634-640},
  Volume	= {90},
  Abstract	= {Human myocardium has long been considered to have
		  essentially no intrinsic regenerative capacity. Recent
		  studies in rodent models, however, have suggested the
		  presence of an extracardiac stem cell population, perhaps
		  in bone marrow, that is capable of some reconstitution of
		  cardiomyocytes after injury. To determine whether similar
		  mechanisms exist in the human heart, we evaluated human
		  female allograft hearts transplanted into male patients.
		  The presence of Y chromosomes in cardiomyocytes would
		  indicate these cells arose from the recipient, rather than
		  the donor heart. We identified 5 male patients who had
		  retained a female heart at least 9 months before death and
		  necropsy. Remarkably, in each case, the transplanted heart
		  contained a minute but readily detectable fraction of Y
		  chromosome-positive cardiomyocytes. The mean percentage of
		  cardiomyocytes arising from the host was estimated to be
		  0.04% with a median of 0.016%. Most Y-positive
		  cardiomyocytes were associated with regions of acute
		  rejection, suggesting such chimerism involves an injury
		  event. Furthermore, the sole patient whose immediate cause
		  of death was allograft rejection showed a much higher
		  percentage of host-derived cardiomyocytes, up to 29% in
		  local, 1-mm2 ?hot spots.? Thus, adult humans have
		  extracardiac progenitor cells capable of migrating to and
		  repopulating damaged myocardium, but this process occurs at
		  very low levels.},
  DOI		= {10.1161/01.RES.0000014822.62629.EB},
  EPrint	= {http://circres.ahajournals.org/content/90/6/634.full.pdf+html},
  File		= {laflamme02.pdf:laflamme02.pdf:PDF},
  timestamp	= {2015/09/11},
  URL		= {http://circres.ahajournals.org/content/90/6/634.abstract}
}

@Article{	  laflamme2011nature,
  Title		= {Heart regeneration},
  Author	= {Laflamme, Michael A and Murry, Charles E},
  Journal	= {Nature},
  Year		= {2011},
  Number	= {7347},
  Pages		= {326--335},
  Volume	= {473},
  File		= {laflamme11.pdf:laflamme11.pdf:PDF},
  Publisher	= {Nature Publishing Group},
  timestamp	= {2015/09/23}
}

@Article{	  lafortune2012,
  Author	= {Lafortune, P. and Ar\'is, R. and V\'azquez, M. and
		  Houzeaux, G.},
  Title		= {Coupled electromechanical model of the heart: Parallel
		  finite element formulation},
  Journal	= {International Journal for Numerical Methods in Biomedical
		  Engineering},
  Volume	= {28},
  Number	= {1},
  Publisher	= {John Wiley & Sons, Ltd},
  ISSN		= {2040-7947},
  DOI		= {10.1002/cnm.1494},
  Pages		= {72--86},
  Keywords	= {cardiac mechanics, electrophysiology, parallelization,
		  finite element methods},
  Year		= {2012}
}

@Article{	  lagana_2010,
  Author	= "Lagan\'a, K. and Balossino, R. and Migliavacca, F. and
		  Pennati, G. and Bove, E.~L. and de Leval, M.~R. and Dubini,
		  G.",
  Title		= "Multiscale modeling of the cardiovascular system:
		  application to the studyof pulmonaryand coronary perfusions
		  in the univentricular circulation",
  Journal	= "J. Biomech.",
  Volume	= "38",
  Pages		= "625--640",
  Year		= "2010"
}

###Article{	  lagana_2010,
  Author	= "Lagan\'a, K. and Balossino, R. and Migliavacca, F. and
		  Pennati, G. and Bove, E.~L. and de Leval, M.~R. and Dubini,
		  G.",
  Title		= "Multiscale modeling of the cardiovascular system:
		  application to the studyof pulmonaryand coronary perfusions
		  in the univentricular circulation",
  Journal	= "J. Biomech.",
  Volume	= "38",
  Pages		= "625--640",
  Year		= "2010"
}

@Article{	  lagree-99,
  Author	= {Lagr\'ee, P.-Y.},
  Journal	= {Eur. Phys. J. AP},
  Pages		= {153--163},
  Title		= {An inverse technique to deduce the elasticity of a large
		  artery},
  Volume	= {9},
  Year		= {1999}
}

###Article{	  lagree-99,
  Author	= {Lagr\'ee, P.-Y.},
  Journal	= {Eur. Phys. J. AP},
  Pages		= {153--163},
  Title		= {An inverse technique to deduce the elasticity of a large
		  artery},
  Volume	= {9},
  Year		= {1999}
}

@Article{	  lal_data_2017,
  Title		= {Data Assimilation for Identification of Cardiovascular
		  Network Characteristics},
  Volume	= {33},
  Number	= {5},
  JournalTitle	= {International journal for numerical methods in biomedical
		  engineering},
  Year		= {2017},
  Pages		= {e2824},
  Author	= {Lal, Rajnesh and Mohammadi, Bijan and Nicoud, Franck}
}

@Article{	  lamata2014aortic,
  Title		= {Aortic relative pressure components derived from
		  four-dimensional flow cardiovascular magnetic resonance},
  Author	= {Lamata, Pablo and Pitcher, Alex and Krittian, Sebastian
		  and Nordsletten, David and Bissell, Malenka M and Cassar,
		  Thomas and Barker, Alex J and Markl, Michael and Neubauer,
		  Stefan and Smith, Nicolas P},
  Journal	= {Magnetic resonance in medicine},
  Volume	= {72},
  Number	= {4},
  Pages		= {1162--1169},
  Year		= {2014},
  Publisher	= {Wiley Online Library}
}

###Article{	  lamata2014aortic,
  Title		= {Aortic relative pressure components derived from
		  four-dimensional flow cardiovascular magnetic resonance},
  Author	= {Lamata, Pablo and Pitcher, Alex and Krittian, Sebastian
		  and Nordsletten, David and Bissell, Malenka M and Cassar,
		  Thomas and Barker, Alex J and Markl, Michael and Neubauer,
		  Stefan and Smith, Nicolas P},
  Journal	= {Magnetic resonance in medicine},
  Volume	= {72},
  Number	= {4},
  Pages		= {1162--1169},
  Year		= {2014},
  Publisher	= {Wiley Online Library}
}

@Article{	  lancellotti2018outcomesas,
  Title		= {Outcomes of Patients With Asymptomatic Aortic Stenosis
		  Followed Up in Heart Valve Clinics},
  Author	= {Lancellotti, Patrizio and Magne, Julien and Dulgheru,
		  Raluca and Clavel, Marie-Annick and Donal, Erwan and
		  Vannan, Mani A and Chambers, John and Rosenhek, Raphael and
		  Habib, Gilbert and Lloyd, Guy and others},
  Journal	= {JAMA cardiology},
  Year		= {2018},
  Note		= {doi:10.1001/jamacardio.2018.3152}
}

@Article{	  landajuela2017fsibench,
  Title		= {Coupling schemes for the FSI forward prediction challenge:
		  comparative study and validation},
  Author	= {Landajuela, Mikel and Vidrascu, Marina and Chapelle,
		  Dominique and Fern{\'a}ndez, Miguel A},
  Journal	= {International journal for numerical methods in biomedical
		  engineering},
  Volume	= {33},
  Number	= {4},
  Pages		= {e2813},
  Year		= {2017},
  Publisher	= {Wiley Online Library}
}

@Book{		  landau-lifschitz-6,
  Author	= {Landau, L. and Lifchitz, E.},
  Publisher	= {Pergamon Press},
  Title		= {Course of Theoretical Physics, volume 6},
  Year		= {1984}
}

###Book{	  landau-lifschitz-6,
  Author	= {Landau, L. and Lifchitz, E.},
  Publisher	= {Pergamon Press},
  Title		= {Course of Theoretical Physics, volume 6},
  Year		= {1984}
}

@Article{	  larson-higdon-87,
  Author	= {Larson, R.E. and Higdon, J.J.L.},
  code		= {por12},
  Journal	= {J. Fluid Mech.},
  Pages		= {119-136},
  Title		= {Microscopic flow near the surface of two-dimensional
		  porous media. Part2. Transverse flow},
  Volume	= {178},
  Year		= {1987}
}

###Article{	  larson-higdon-87,
  Author	= {Larson, R.E. and Higdon, J.J.L.},
  code		= {por12},
  Journal	= {J. Fluid Mech.},
  Pages		= {119-136},
  Title		= {Microscopic flow near the surface of two-dimensional
		  porous media. Part2. Transverse flow},
  Volume	= {178},
  Year		= {1987}
}

@Article{	  lasiecka-triggiani-03,
  Author	= {Lasiecka, I. and Triggiani, R.},
  date-added	= {2011-09-09 16:18:04 +0200},
  date-modified	= {2011-09-09 16:18:18 +0200},
  Journal	= {Abstr. Appl. Anal.},
  Keywords	= {EDP Control},
  Number	= {19},
  Pages		= {1061--1139},
  Title		= {{$L\sb 2(\Sigma)$}-regularity of the boundary to boundary
		  operator {$B\sp \ast L$} for hyperbolic and {P}etrowski
		  {PDE}s},
  Year		= {2003}
}

###Article{	  lasiecka-triggiani-03,
  Author	= {Lasiecka, I. and Triggiani, R.},
  date-added	= {2011-09-09 16:18:04 +0200},
  date-modified	= {2011-09-09 16:18:18 +0200},
  Journal	= {Abstr. Appl. Anal.},
  Keywords	= {EDP Control},
  Number	= {19},
  Pages		= {1061--1139},
  Title		= {{$L\sb 2(\Sigma)$}-regularity of the boundary to boundary
		  operator {$B\sp \ast L$} for hyperbolic and {P}etrowski
		  {PDE}s},
  Year		= {2003}
}

@Article{	  lassila_reduced_2013,
  Title		= {A Reduced Computational and Geometrical Framework for
		  Inverse Problems in Hemodynamics},
  Volume	= {29},
  Number	= {7},
  JournalTitle	= {International journal for numerical methods in biomedical
		  engineering},
  Year		= {2013},
  Pages		= {741--776},
  Author	= {Lassila, Toni and Manzoni, Andrea and Quarteroni, Alfio
		  and Rozza, Gianluigi}
}

@Article{	  laurent_cockcroft_vanbortel_boutouyrie_giannattasio_hayoz_pannier_vlachopoulos_wilkinson_struijker-boudier_2006,
  Title		= {Expert consensus document on arterial stiffness:
		  methodological issues and clinical applications.},
  Volume	= {27},
  Number	= {21},
  Journal	= {European Heart Journal},
  Author	= {Laurent, S. and Cockcroft, J. and Van Bortel, L. and
		  Boutouyrie, P. and Giannattasio, C. and Hayoz, D. and
		  Pannier, B. and Vlachopoulos, C. and Wilkinson, I. and
		  Struijker-Boudier, H.},
  Year		= {2006},
  Pages		= {2588--2605}
}

###Article{	  laurent_cockcroft_vanbortel_boutouyrie_giannattasio_hayoz_pannier_vlachopoulos_wilkinson_struijker-boudier_2006,
  Title		= {Expert consensus document on arterial stiffness:
		  methodological issues and clinical applications.},
  Volume	= {27},
  URL		= {http://www.ncbi.nlm.nih.gov/pubmed/17000623},
  Number	= {21},
  Journal	= {European Heart Journal},
  Author	= {Laurent, S. and Cockcroft, J. and Van Bortel, L. and
		  Boutouyrie, P. and Giannattasio, C. and Hayoz, D. and
		  Pannier, B. and Vlachopoulos, C. and Wilkinson, I. and
		  Struijker-Boudier, H.},
  Year		= {2006},
  Pages		= {2588--2605}
}

@Article{	  layton-lee-peterson-02,
  Author	= {Layton, W. and Lee, H. K. and Peterson, J.},
  Journal	= {Appl. Math. Comput.},
  Number	= {1},
  Pages		= {1--19},
  Title		= {A defect-correction method for the incompressible
		  {N}avier-{S}tokes equations},
  Volume	= {129},
  Year		= {2002}
}

###Article{	  layton-lee-peterson-02,
  Author	= {Layton, W. and Lee, H. K. and Peterson, J.},
  Journal	= {Appl. Math. Comput.},
  Number	= {1},
  Pages		= {1--19},
  Title		= {A defect-correction method for the incompressible
		  {N}avier-{S}tokes equations},
  Volume	= {129},
  Year		= {2002}
}

@InProceedings{	  le-bris-98,
  Author	= {Le Bris, C.},
  BookTitle	= {Proceedings of the 4th European Computational Fluid
		  Dynamics Conference ECCOMAS 98},
  Pages		= {800--802},
  Publisher	= {Wiler},
  Title		= {Some theoretical and numerical issues related to the
		  multifluid magnetohydrodynamics equations},
  Year		= {1998}
}

###InProceedings{ le-bris-98,
  Author	= {Le Bris, C.},
  BookTitle	= {Proceedings of the 4th European Computational Fluid
		  Dynamics Conference ECCOMAS 98},
  Pages		= {800--802},
  Publisher	= {Wiler},
  Title		= {Some theoretical and numerical issues related to the
		  multifluid magnetohydrodynamics equations},
  Year		= {1998}
}

@Book{		  le-tallec-00,
  Author	= {Le Tallec, P.},
  Publisher	= {Ellipses},
  Title		= {Introduction {\`a} la dynamique des structures},
  Year		= {2000}
}

###Book{	  le-tallec-00,
  Author	= {Le Tallec, P.},
  Publisher	= {Ellipses},
  Title		= {Introduction {\`a} la dynamique des structures},
  Year		= {2000}
}

@InCollection{	  le-tallec-94,
  Author	= {Le Tallec, P.},
  BookTitle	= {Handbook of numerical analysis, Vol.\ III},
  Pages		= {465--622},
  Publisher	= {North-Holland},
  Title		= {Numerical methods for nonlinear three-dimensional
		  elasticity},
  Year		= {1994}
}

###InCollection{  le-tallec-94,
  Author	= {Le Tallec, P.},
  BookTitle	= {Handbook of numerical analysis, Vol.\ III},
  Pages		= {465--622},
  Publisher	= {North-Holland},
  Title		= {Numerical methods for nonlinear three-dimensional
		  elasticity},
  Year		= {1994}
}

@Article{	  le-tallec-mani-00,
  Author	= {Le Tallec, P. and Mani, S.},
  code		= {fsi2},
  Journal	= {Numer. Math.},
  Number	= {2},
  Pages		= {317--354},
  Title		= {Numerical analysis of a linearised fluid-structure
		  interaction problem},
  Volume	= {87},
  Year		= {2000}
}

###Article{	  le-tallec-mani-00,
  Author	= {Le Tallec, P. and Mani, S.},
  code		= {fsi2},
  Journal	= {Numer. Math.},
  Number	= {2},
  Pages		= {317--354},
  Title		= {Numerical analysis of a linearised fluid-structure
		  interaction problem},
  Volume	= {87},
  Year		= {2000}
}

@Article{	  le-tallec-mouro-01,
  Author	= {Le Tallec, P. and Mouro, J.},
  code		= {fsi1},
  Journal	= {Comput. Meth. Appl. Mech. Engrg.},
  Pages		= {3039-3067},
  Title		= {Fluid structure interaction with large structural
		  displacements},
  Volume	= {190},
  Year		= {2001}
}

###Article{	  le-tallec-mouro-01,
  Author	= {Le Tallec, P. and Mouro, J.},
  code		= {fsi1},
  Journal	= {Comput. Meth. Appl. Mech. Engrg.},
  Pages		= {3039-3067},
  Title		= {Fluid structure interaction with large structural
		  displacements},
  Volume	= {190},
  Year		= {2001}
}

@Article{	  lebihan1986radiology,
  Title		= {{MR} imaging of intravoxel incoherent motions: application
		  to diffusion and perfusion in neurologic disorders.},
  Author	= {Le Bihan, Denis and Breton, Eric and Lallemand, Denis and
		  Grenier, Philippe and Cabanis, Emmanuel and Laval-Jeantet,
		  Maurice},
  Journal	= {Radiology},
  Year		= {1986},
  Number	= {2},
  Pages		= {401--407},
  Volume	= {161},
  Keywords	= {IVIM, brain}
}

@Article{	  lebihan1988radiology,
  Title		= {Separation of diffusion and perfusion in intravoxel
		  incoherent motion {MR} imaging.},
  Author	= {Le Bihan, Denis and Breton, Eric and Lallemand, Denis and
		  Aubin, M. L. and Vignaud, J. and Laval-Jeantet, M.},
  Journal	= {Radiology},
  Year		= {1988},
  Number	= {2},
  Pages		= {497--505},
  Volume	= {168},
  owner		= {david},
  timestamp	= {2015-04-21 20:18:07},
  URL		= {http://pubs.rsna.org/doi/abs/10.1148/radiology.168.2.3393671},
  URLDate	= {2015-04-21}
}

@Article{	  lee2015bmma,
  Title		= {A computational model that predicts reverse growth in
		  response to mechanical unloading},
  Author	= {Lee, L.C. and Genet, M. and Acevedo-Bolton, G. and
		  Ordovas, K. and Guccione, J.M. and Kuhl, E.},
  Journal	= {Biomechanics and Modeling in Mechanobiology},
  Year		= {2015},
  Number	= {2},
  Pages		= {217-229},
  Volume	= {14},
  DOI		= {10.1007/s10237-014-0598-0},
  File		= {lee15.pdf:lee15.pdf:PDF},
  ISSN		= {1617-7959},
  Keywords	= {Remodeling; Reverse remodeling; Growth; End-diastolic
		  pressure?volume relationship; Finite element method;
		  Magnetic resonance imaging},
  Language	= {English},
  Publisher	= {Springer Berlin Heidelberg},
  timestamp	= {2014/07/29},
  URL		= {http://dx.doi.org/10.1007/s10237-014-0598-0}
}

@Article{	  lee2015bmmb,
  Title		= {An integrated electromechanical-growth heart model for
		  simulating cardiac therapies},
  Author	= {Lee, LikChuan and Sundnes, Joakim and Genet, Martin and
		  Wenk, JonathanF. and Wall, SamuelT.},
  Journal	= {Biomechanics and Modeling in Mechanobiology},
  Year		= {2015},
  Pages		= {1-13},
  DOI		= {10.1007/s10237-015-0723-8},
  File		= {lee15a.pdf:lee15a.pdf:PDF},
  ISSN		= {1617-7959},
  Keywords	= {Finite element modeling; Growth and remodeling; Cardiac
		  electromechanics; Myocardial infarction; Bioinjection
		  therapy},
  Language	= {English},
  Publisher	= {Springer Berlin Heidelberg},
  timestamp	= {2015/09/22},
  URL		= {http://dx.doi.org/10.1007/s10237-015-0723-8}
}

@Article{	  lee_three-point_1995,
  Title		= {Three-{{Point Phase}}-{{Contrast Velocity Measurements}}
		  with {{Increased Velocity}}-to-{{Noise Ratio}}},
  Volume	= {33},
  JournalTitle	= {Magnetic Resonance in Medicine},
  Date		= {1995},
  Pages		= {122-128},
  Author	= {Lee, Adrian and Pike, Bruce and Pelc, Norbert}
}

@Article{	  legrice1995,
  Author	= {LeGrice, I. J. and Smaill, B. H. and Chai, L. Z. and
		  Edgar, S. G. and Gavin, J. B. and Hunter, P. J.},
  Title		= {Laminar structure of the heart: ventricular myocyte
		  arrangement and connective tissue architecture in the dog},
  Volume	= {269},
  Number	= {2},
  Pages		= {H571-H582},
  Year		= {1995},
  Abstract	= {We have studied the three-dimensional arrangement of
		  ventricular muscle cells and the associated extracellular
		  connective tissue matrix in dog hearts. Four hearts were
		  potassium-arrested, excised, and perfusion-fixed at zero
		  transmural pressure. Full-thickness segments were cut from
		  the right and left ventricular walls at a series of
		  precisely located sites. Morphology was visualized
		  macroscopically and with scanning electron microscopy in 1)
		  transmural planes of section and 2) planes tangential to
		  the epicardial surface. The appearance of all specimens was
		  consistent with an ordered laminar arrangement of myocytes
		  with extensive cleavage planes between muscle layers. These
		  planes ran radially from endocardium toward epicardium in
		  transmural section and coincided with the local muscle
		  fiber orientation in tangential section. Stereological
		  techniques were used to quantify aspects of this
		  organization. There was no consistent variation in the
		  cellular organization of muscle layers (48.4 +/- 20.4
		  microns thick and 4 +/- 2 myocytes across) transmurally or
		  in different ventricular regions (23 sites in 6 segments),
		  but there was significant transmural variation in the
		  coupling between adjacent layers. The number of branches
		  between layers decreased twofold from subepicardium to
		  midwall, whereas the length distribution of perimysial
		  collagen fibers connecting muscle layers was greatest in
		  the midwall. We conclude that ventricular myocardium is not
		  a uniformly branching continuum but a laminar hierarchy in
		  which it is possible to identify three axes of material
		  symmetry at any point.},
  Journal	= {American Journal of Physiology - Heart and Circulatory
		  Physiology}
}

@InCollection{	  lekadir2011predictive,
  Title		= {Predictive modeling of cardiac fiber orientation using the
		  Knutsson mapping},
  Author	= {Lekadir, Karim and Ghafaryasl, Babak and Mu{\~n}oz-Moreno,
		  Emma and Butakoff, Constantine and Hoogendoorn, Corn{\'e}
		  and Frangi, Alejandro F},
  BookTitle	= {Medical Image Computing and Computer-Assisted
		  Intervention--MICCAI 2011},
  Pages		= {50--57},
  Year		= {2011},
  Publisher	= {Springer}
}

@Article{	  lekadir2014statistical,
  Title		= {Statistical personalization of ventricular fiber
		  orientation using shape predictors},
  Author	= {Lekadir, Karim and Hoogendoorn, Corn{\'e} and Pereanez,
		  Marco and Alb{\`a}, X{\`e}nia and Pashaei, Ali and Frangi,
		  Alejandro F},
  Journal	= {Medical Imaging, IEEE Transactions on},
  Volume	= {33},
  Number	= {4},
  Pages		= {882--890},
  Year		= {2014},
  Publisher	= {IEEE}
}

@Article{	  lekadir2015media,
  Title		= {Statistically-driven 3D fiber reconstruction and denoising
		  from multi-slice cardiac DTI using a Markov random field
		  model},
  Author	= {Lekadir, Karim and Lange, Matthias and Zimmer, Veronika A
		  and Hoogendoorn, Corn{\'e} and Frangi, Alejandro F},
  Journal	= {Medical Image Analysis},
  Year		= {2015},
  Note		= {In press},
  Keywords	= {DTI, DMRI, statistical, denoising, Markov},
  Publisher	= {Elsevier}
}

@Article{	  lemke2011mri,
  Title		= {Toward an optimal distribution of b values for intravoxel
		  incoherent motion imaging},
  Author	= {Lemke, Andreas and Stieltjes, Bram and Schad, Lothar R.
		  and Laun, Frederik B.},
  Journal	= {Magnetic Resonance Imaging},
  Year		= {2011},
  Month		= {Jul},
  Number	= {6},
  Pages		= {766--776},
  Volume	= {29},
  DOI		= {10.1016/j.mri.2011.03.004},
  File		= {:Lemke2011MRI.pdf:PDF},
  ISSN		= {0730-725X},
  Publisher	= {Elsevier BV},
  URL		= {http://dx.doi.org/10.1016/j.mri.2011.03.004}
}

@InCollection{	  leone-gresho-84,
  Author	= {Leone, J.M. and Gresho, P.M.},
  Pages		= {667-683},
  Publisher	= {Springer-Verlag},
  Title		= {Another attempt to overcome the bent element blues},
  Year		= {1984}
}

###InCollection{  leone-gresho-84,
  Author	= {Leone, J.M. and Gresho, P.M.},
  BookTitle	= {5th international conference on finite element methods in
		  water ressources, {Burlington}},
  Pages		= {667-683},
  Publisher	= {Springer-Verlag},
  Title		= {Another attempt to overcome the bent element blues},
  Year		= {1984}
}

@Article{	  lesoinne-farhat-95,
  Author	= {Lesoinne, M. and Farhat, C.},
  Journal	= {Computer Methods in Applied Mechanics and Engineering},
  Pages		= {71-90},
  Title		= {Geometric Conservation Laws for Flow Problems with Moving
		  Boundaries and Deformable Meshes and Their Impact on
		  Aeroelastic Computations},
  Volume	= {134},
  Year		= {1996}
}

###Article{	  lesoinne-farhat-95,
  Author	= {Lesoinne, M. and Farhat, C.},
  Journal	= {Computer Methods in Applied Mechanics and Engineering},
  Pages		= {71-90},
  Title		= {Geometric Conservation Laws for Flow Problems with Moving
		  Boundaries and Deformable Meshes and Their Impact on
		  Aeroelastic Computations},
  Volume	= {134},
  Year		= {1996}
}

@Article{	  lesoinne-farhat-98,
  Author	= {Lesoinne, M. and Farhat, C.},
  code		= {fsi 19},
  Journal	= {AIAA Journal},
  Number	= {9},
  Pages		= {1754-1757},
  Title		= {Higher-order subiteration-free staggered algorithm for
		  nonlinear transient aeroelastic problems},
  Volume	= {36},
  Year		= {1998}
}

###Article{	  lesoinne-farhat-98,
  Author	= {Lesoinne, M. and Farhat, C.},
  code		= {fsi 19},
  Journal	= {AIAA Journal},
  Number	= {9},
  Pages		= {1754-1757},
  Title		= {Higher-order subiteration-free staggered algorithm for
		  nonlinear transient aeroelastic problems},
  Volume	= {36},
  Year		= {1998}
}

@Article{	  leuprecht-perktold-01,
  Author	= {Leuprecht, A. and Perktold, K.},
  Journal	= {Computer Methods in Biomechanics and Biomedical
		  Engineering},
  Note		= {(in press)},
  Title		= {Numerical study on viscoelastic blood flow in large
		  arteries},
  Year		= {2001}
}

###Article{	  leuprecht-perktold-01,
  Author	= {Leuprecht, A. and Perktold, K.},
  Journal	= {Computer Methods in Biomechanics and Biomedical
		  Engineering},
  Note		= {(in press)},
  Title		= {Numerical study on viscoelastic blood flow in large
		  arteries},
  Year		= {2001}
}

@Book{		  levitt2008spindynnmr,
  Title		= {Spin Dynamics: Basics of Nuclear Magnetic Resonance},
  Author	= {Levitt, Malcolm H.},
  Publisher	= {John Wiley \& Sons},
  Year		= {2008},
  Address	= {Chichester},
  Edition	= {2},
  owner		= {david},
  timestamp	= {2015-05-06 19:42:35}
}

@Article{	  levy-83,
  Annote	= {darcy, brinkman, perturbation},
  Author	= {Levy, T.},
  code		= {por1},
  Journal	= {Int. J. Engng. Sci.},
  Number	= {1},
  Pages		= {11-23},
  Title		= {Fluid flow through an array of fixed particles},
  Volume	= {21},
  Year		= {1983}
}

###Article{	  levy-83,
  Annote	= {darcy, brinkman, perturbation},
  Author	= {Levy, T.},
  code		= {por1},
  Journal	= {Int. J. Engng. Sci.},
  Number	= {1},
  Pages		= {11-23},
  Title		= {Fluid flow through an array of fixed particles},
  Volume	= {21},
  Year		= {1983}
}

@Article{	  levy-90,
  Author	= {Levy, T.},
  code		= {por2},
  Journal	= {Eur. J. Mech., B/Fluids},
  Number	= {4},
  Pages		= {309-327},
  Title		= {Filtration in a porous fissured rock: influence of the
		  fissures connexity},
  Volume	= {9},
  Year		= {1990}
}

###Article{	  levy-90,
  Author	= {Levy, T.},
  code		= {por2},
  Journal	= {Eur. J. Mech., B/Fluids},
  Number	= {4},
  Pages		= {309-327},
  Title		= {Filtration in a porous fissured rock: influence of the
		  fissures connexity},
  URL		= {darcy},
  Volume	= {9},
  Year		= {1990},
  bdsk-url-1	= {darcy}
}

@Article{	  li2013prevalence,
  Title		= {Prevalence and trends of the abdominal aortic aneurysms
		  epidemic in general population-a meta-analysis},
  Author	= {Li, Xi and Zhao, Ge and Zhang, Jian and Duan, Zhiquan and
		  Xin, Shijie},
  Journal	= {PLoS One},
  Volume	= {8},
  Number	= {12},
  Pages		= {e81260},
  Year		= {2013},
  Publisher	= {Public Library of Science}
}

@Article{	  lighthill_displacement_1958,
  langid	= {english},
  Title		= {On Displacement Thickness},
  Volume	= {4},
  ISSN		= {0022-1120, 1469-7645},
  URL		= {http://www.journals.cambridge.org/abstract_S0022112058000525},
  DOI		= {10.1017/S0022112058000525},
  Number	= {04},
  JournalTitle	= {Journal of Fluid Mechanics},
  URLDate	= {2019-08-24},
  Date		= {1958-08},
  Pages		= {383},
  Author	= {Lighthill, M. J.}
}

@Article{	  linke_pressure-robustness_2016,
  Title		= {Pressure-Robustness and Discrete {{Helmholtz}} Projectors
		  in Mixed Finite Element Methods for the Incompressible
		  {{Navier}}\textendash{{Stokes}} Equations},
  Author	= {Linke, A. and Merdon, C.},
  Year		= {2016},
  Month		= nov,
  Volume	= {311},
  Pages		= {304--326},
  ISSN		= {0045-7825},
  DOI		= {10.1016/j.cma.2016.08.018},
  Abstract	= {Recently, it was understood how to repair a certain
		  L2-orthogonality of discretely divergence-free vector
		  fields and gradient fields such that the velocity error of
		  inf\textendash{}sup stable discretizations for the
		  incompressible Stokes equations becomes
		  pressure-independent. These new `pressure-robust' Stokes
		  discretizations deliver a small velocity error, whenever
		  the continuous velocity field can be well approximated on a
		  given grid. On the contrary, classical inf\textendash{}sup
		  stable Stokes discretizations can guarantee a small
		  velocity error only when both the velocity and the pressure
		  field can be approximated well, simultaneously. In this
		  contribution, `pressure-robustness' is extended to the
		  time-dependent Navier\textendash{}Stokes equations. In
		  particular, steady and time-dependent potential flows are
		  shown to build an entire class of benchmarks, where
		  pressure-robust discretizations can outperform classical
		  approaches significantly. Speedups will be explained by a
		  new theoretical concept, the `discrete Helmholtz projector'
		  of an inf\textendash{}sup stable discretization. Moreover,
		  different discrete nonlinear convection terms are
		  discussed, and skew-symmetric pressure-robust
		  discretizations are proposed.},
  Journal	= {Computer Methods in Applied Mechanics and Engineering}
}

@Book{		  lion-69,
  Author	= {Lions, J.-L.},
  Publisher	= {Dunod},
  Title		= {Quelques m{\'e}thodes de r{\'e}solution des probl{\`e}mes
		  aux limites non lin{\'e}aires},
  Year		= {1969}
}

###Book{	  lion-69,
  Author	= {Lions, J.-L.},
  Publisher	= {Dunod},
  Title		= {Quelques m{\'e}thodes de r{\'e}solution des probl{\`e}mes
		  aux limites non lin{\'e}aires},
  Year		= {1969}
}

@Book{		  lions-96,
  Address	= {Oxford},
  Author	= {Lions, P.-L.},
  Publisher	= {{Oxford University Press}},
  Title		= {Mathematical {Topics} in {Fluid} {Mechanics}. {Vol. 1 :
		  incompressible models}},
  Year		= {1996}
}

###Book{	  lions-96,
  Address	= {Oxford},
  Author	= {Lions, P.-L.},
  Publisher	= {{Oxford University Press}},
  Title		= {Mathematical {Topics} in {Fluid} {Mechanics}. {Vol. 1 :
		  incompressible models}},
  Year		= {1996}
}

@Article{	  lions-maday-turinici-01,
  Author	= {Lions, Jacques-Louis and Maday, Yvon and Turinici,
		  Gabriel},
  fjournal	= {Comptes Rendus de l'Acad{\'e}mie des Sciences. S{\'e}rie
		  I. Math{\'e}matique},
  Journal	= {C. R. Acad. Sci. Paris S{\'e}r. I Math.},
  Number	= {7},
  Pages		= {661--668},
  Title		= {R{\'e}solution d'{EDP} par un sch{\'e}ma en temps
		  ``parar{\'e}el''},
  Volume	= {332},
  Year		= {2001}
}

###Article{	  lions-maday-turinici-01,
  Author	= {Lions, Jacques-Louis and Maday, Yvon and Turinici,
		  Gabriel},
  fjournal	= {Comptes Rendus de l'Acad{\'e}mie des Sciences. S{\'e}rie
		  I. Math{\'e}matique},
  Journal	= {C. R. Acad. Sci. Paris S{\'e}r. I Math.},
  Number	= {7},
  Pages		= {661--668},
  Title		= {R{\'e}solution d'{EDP} par un sch{\'e}ma en temps
		  ``parar{\'e}el''},
  Volume	= {332},
  Year		= {2001}
}

@Book{		  lions-magenes-68,
  Author	= {Lions, J.-L. and Magenes, E.},
  Publisher	= {Dunod},
  Title		= {Probl{\`e}mes aux limites non homog{\`e}nes et
		  applications},
  Year		= {1968}
}

###Book{	  lions-magenes-68,
  Author	= {Lions, J.-L. and Magenes, E.},
  Publisher	= {Dunod},
  Title		= {Probl{\`e}mes aux limites non homog{\`e}nes et
		  applications},
  Year		= {1968}
}

@Article{	  lions-perthame-souganidis-96,
  Author	= {Lions, P.-L. and Perthame, B. and Souganidis, P. E.},
  Journal	= {Comm. Pure Appl. Math.},
  Number	= {6},
  Pages		= {599--638},
  Title		= {Existence and stability of entropy solutions for the
		  hyperbolic systems of isentropic gas dynamics in {E}ulerian
		  and {L}agrangian coordinates},
  Volume	= {49},
  Year		= {1996}
}

###Article{	  lions-perthame-souganidis-96,
  Author	= {Lions, P.-L. and Perthame, B. and Souganidis, P. E.},
  Journal	= {Comm. Pure Appl. Math.},
  Number	= {6},
  Pages		= {599--638},
  Title		= {Existence and stability of entropy solutions for the
		  hyperbolic systems of isentropic gas dynamics in {E}ulerian
		  and {L}agrangian coordinates},
  Volume	= {49},
  Year		= {1996}
}

@Article{	  liu_effect_2011,
  langid	= {english},
  Title		= {Effect of Non-{{Newtonian}} and Pulsatile Blood Flow on
		  Mass Transport in the Human Aorta},
  Volume	= {44},
  ISSN		= {00219290},
  URL		= {https://linkinghub.elsevier.com/retrieve/pii/S0021929011000558},
  DOI		= {10.1016/j.jbiomech.2011.01.024},
  Number	= {6},
  JournalTitle	= {Journal of Biomechanics},
  URLDate	= {2019-02-13},
  Year		= {2011-04},
  Pages		= {1123-1131},
  Author	= {Liu, Xiao and Fan, Yubo and Deng, Xiaoyan and Zhan, Fan}
}

@Article{	  loerakker2014bmm,
  Title		= {A physically motivated constitutive model for
		  cell-mediated compaction and collagen remodeling in soft
		  tissues},
  Author	= {Loerakker, Sandra and Obbink-Huizer, Christine and
		  Baaijens, FrankP.T.},
  Journal	= {Biomechanics and Modeling in Mechanobiology},
  Year		= {2014},
  Number	= {5},
  Pages		= {985-1001},
  Volume	= {13},
  DOI		= {10.1007/s10237-013-0549-1},
  ISSN		= {1617-7959},
  Keywords	= {Finite element modeling; Actin stress fibers; Collagen
		  remodeling; Prestress},
  Language	= {English},
  Publisher	= {Springer Berlin Heidelberg},
  timestamp	= {2015/09/23},
  URL		= {http://dx.doi.org/10.1007/s10237-013-0549-1}
}

@Book{		  logan-01,
  Author	= {Logan, J. D.},
  Publisher	= {Springer-Verlag},
  Title		= {Transport modeling in hydrogeochemical systems},
  Year		= {2001}
}

###Book{	  logan-01,
  Author	= {Logan, J. D.},
  Publisher	= {Springer-Verlag},
  Title		= {Transport modeling in hydrogeochemical systems},
  Year		= {2001}
}

@Article{	  logan-jewett-arnold-95,
  Author	= {Logan, B.E. and Jewett, D.G. and Arnold, R.G. and Bouwer,
		  E.J. and O'Melia, C.R.},
  code		= {por25},
  Journal	= {J. Environ. Eng.},
  Pages		= {869-873},
  Title		= {Clarification of clean-bed filtration models},
  Volume	= {121},
  Year		= {1995}
}

###Article{	  logan-jewett-arnold-95,
  Author	= {Logan, B.E. and Jewett, D.G. and Arnold, R.G. and Bouwer,
		  E.J. and O'Melia, C.R.},
  code		= {por25},
  Journal	= {J. Environ. Eng.},
  Pages		= {869-873},
  Title		= {Clarification of clean-bed filtration models},
  Volume	= {121},
  Year		= {1995}
}

@InProceedings{	  lombaert-etal-11d,
  Author	= {Lombaert, Herve and Peyrat, Jean-Marc and Croisille,
		  Pierre and Rapacchi, Stanislas and Fanton, Laurent and
		  Clarysse, Patrick and Delingette, Herve and Nicholas,
		  Ayache},
  Title		= {Statistical Analysis of the Human Cardiac Fiber
		  Architecture from DT-MRI},
  BookTitle	= {Proceedings of the 5th International Conference on
		  Functional Imaging and Modeling of the Heart},
  Series	= {FIMH 2011, LNCS 6666},
  Year		= {2011},
  ISBN		= {},
  Location	= {New York, USA},
  Pages		= {171--179},
  numpages	= {9},
  Publisher	= {Springer-Verlag},
  Address	= {Berlin, Heidelberg}
}

@Article{	  lombaert2012human,
  Title		= {Human atlas of the cardiac fiber architecture: study on a
		  healthy population},
  Author	= {Lombaert, H. and Peyrat, J. and Croisille, P. and
		  Rapacchi, S. and Fanton, L. and Cheriet, F. and Clarysse,
		  P. and Magnin, I. and Delingette, H. and Ayache, N.},
  Journal	= {{IEEE Transactions on Medical Imaging}},
  Volume	= {31},
  Number	= {7},
  Pages		= {1436--1447},
  Year		= {2012},
  Publisher	= {IEEE}
}

@InCollection{	  lombaert2013joint,
  Title		= {Joint statistics on cardiac shape and fiber architecture},
  Author	= {Lombaert, Herv{\'e} and Peyrat, Jean-Marc},
  BookTitle	= {Medical Image Computing and Computer-Assisted
		  Intervention--MICCAI 2013},
  Pages		= {492--500},
  Year		= {2013},
  Publisher	= {Springer}
}

@Article{	  lombardi_inverse_2014,
  Title		= {Inverse Problems in {{1D}} Hemodynamics on Systemic
		  Networks: A Sequential Approach},
  Volume	= {30},
  ShortTitle	= {Inverse Problems in {{1D}} Hemodynamics on Systemic
		  Networks},
  Number	= {2},
  JournalTitle	= {International journal for numerical methods in biomedical
		  engineering},
  Year		= {2014},
  Pages		= {160--179},
  Author	= {Lombardi, Damiano}
}

@Article{	  lorell2000circ,
  Title		= {Left Ventricular Hypertrophy: Pathogenesis, Detection, and
		  Prognosis},
  Author	= {Lorell, Beverly H. and Carabello, Blase A.},
  Journal	= {Circulation},
  Year		= {2000},
  Number	= {4},
  Pages		= {470-479},
  Volume	= {102},
  comments	= {How Is Mechanical Information Transduced to Cardiac
		  Growth?},
  DOI		= {10.1161/01.CIR.102.4.470},
  EPrint	= {http://circ.ahajournals.org/content/102/4/470.full.pdf+html},
  File		= {lorell00.pdf:lorell00.pdf:PDF},
  timestamp	= {2015/09/14},
  URL		= {http://circ.ahajournals.org/content/102/4/470.short}
}

@Article{	  lorenz_closed_2012,
  Title		= {Closed Circuit {{MR}} Compatible Pulsatile Pump System
		  Using a Ventricular Assist Device and Pressure Control
		  Unit},
  Author	= {Lorenz, R. and Benk, C. and Bock, J. and Stalder, A. F.
		  and Korvink, J. G. and Hennig, J. and Markl, M.},
  Year		= {2012},
  Volume	= {67},
  Pages		= {258--268},
  Journal	= {Magnetic resonance in medicine},
  Number	= {1}
}

@Article{	  lowes2002nejm,
  Title		= {Myocardial Gene Expression in Dilated Cardiomyopathy
		  Treated with Beta-Blocking Agents},
  Author	= {Lowes, Brian D. and Gilbert, Edward M. and Abraham,
		  William T. and Minobe, Wayne A. and Larrabee, Patti and
		  Ferguson, Debra and Wolfel, Eugene E. and Lindenfeld, JoAnn
		  and Tsvetkova, Tatiana and Robertson, Alastair D. and
		  Quaife, Robert A. and Bristow, Michael R.},
  Journal	= {New England Journal of Medicine},
  Year		= {2002},
  Note		= {PMID: 11986409},
  Number	= {18},
  Pages		= {1357-1365},
  Volume	= {346},
  DOI		= {10.1056/NEJMoa012630},
  EPrint	= {http://dx.doi.org/10.1056/NEJMoa012630},
  File		= {lowes02.pdf:lowes02.pdf:PDF},
  timestamp	= {2015/09/14},
  URL		= {http://dx.doi.org/10.1056/NEJMoa012630}
}

@Article{	  luenberger-71,
  Author	= {Luenberger, D. G.},
  date-added	= {2009-03-10 11:59:23 -0700},
  date-modified	= {2009-03-10 11:59:32 -0700},
  Journal	= {IEEE Transactions on Automatic Control},
  Pages		= {596--602},
  Title		= {An introduction to observers},
  Volume	= {16},
  Year		= {1971}
}

###Article{	  luenberger-71,
  Author	= {Luenberger, D. G.},
  date-added	= {2009-03-10 11:59:23 -0700},
  date-modified	= {2009-03-10 11:59:32 -0700},
  Journal	= {IEEE Transactions on Automatic Control},
  Pages		= {596--602},
  Title		= {An introduction to observers},
  Volume	= {16},
  Year		= {1971}
}

@Article{	  ma-lee-wu-92,
  Author	= {Ma, X. and Lee, G.C. and Wu, S.G.},
  code		= {fsi13},
  Journal	= {Transactions of the ASME},
  Pages		= {490-496},
  Title		= {Numerical simulation for the propagation of nonlinear
		  pulsatile waves in arteries},
  Volume	= {114},
  Year		= {1992}
}

###Article{	  ma-lee-wu-92,
  Author	= {Ma, X. and Lee, G.C. and Wu, S.G.},
  code		= {fsi13},
  Journal	= {Transactions of the ASME},
  Pages		= {490-496},
  Title		= {Numerical simulation for the propagation of nonlinear
		  pulsatile waves in arteries},
  Volume	= {114},
  Year		= {1992}
}

@InCollection{	  maday-09,
  Author	= {Maday, Y.},
  Title		= {Analysis of coupled models for fluid-structure interaction
		  of internal flows},
  BookTitle	= {Cardiovascular mathematics},
  Series	= {MS\&A. Model. Simul. Appl.},
  Volume	= {1},
  Pages		= {279--306},
  Publisher	= {Springer},
  Year		= {2009}
}

###InCollection{  maday-09,
  Author	= {Maday, Y.},
  Title		= {Analysis of coupled models for fluid-structure interaction
		  of internal flows},
  BookTitle	= {Cardiovascular mathematics},
  Series	= {MS\&A. Model. Simul. Appl.},
  Volume	= {1},
  Pages		= {279--306},
  Publisher	= {Springer},
  Year		= {2009}
}

@Article{	  maier2012ijnmbe,
  Title		= {Correlation of biomechanics to tissue reaction in aortic
		  aneurysms assessed by finite elements and
		  [18F]--fluorodeoxyglucose--PET/CT},
  Author	= {Maier, Andreas and Essler, Markus and Gee, Michael W and
		  Eckstein, Hans-Henning and Wall, Wolfgang A and Reeps,
		  Christian},
  Journal	= {International Journal for Numerical Methods in Biomedical
		  Engineering},
  Volume	= {28},
  Number	= {4},
  Pages		= {456--471},
  Year		= {2012},
  Publisher	= {Wiley Online Library}
}

@PhdThesis{	  maillard-92,
  Annote	= {mhd, aluminium, stability},
  Author	= {Maillard, P.},
  code		= {mhd36},
  School	= {Ecole Polytechnique F{\'e}d{\'e}rale de Lausanne},
  Title		= {Sur la stabilit{\'e} magn{\'e}tohydrodynamique d'une
		  cellule de H{\'e}roult de longueur infinie},
  Year		= {1992}
}

###PhdThesis{	  maillard-92,
  Annote	= {mhd, aluminium, stability},
  Author	= {Maillard, P.},
  code		= {mhd36},
  School	= {Ecole Polytechnique F{\'e}d{\'e}rale de Lausanne},
  Title		= {Sur la stabilit{\'e} magn{\'e}tohydrodynamique d'une
		  cellule de H{\'e}roult de longueur infinie},
  Year		= {1992}
}

@Article{	  maillard-romerio-96,
  Author	= {Maillard, P. and Romerio, M. V.},
  Journal	= {Journal of Computational and Applied Mathematics},
  Pages		= {47-65},
  Title		= {A stability criterion for an infinitely long
		  {Hall-H{\'e}roult} cell},
  Volume	= {71},
  Year		= {1996}
}

###Article{	  maillard-romerio-96,
  Author	= {Maillard, P. and Romerio, M. V.},
  Journal	= {Journal of Computational and Applied Mathematics},
  Pages		= {47-65},
  Title		= {A stability criterion for an infinitely long
		  {Hall-H{\'e}roult} cell},
  Volume	= {71},
  Year		= {1996}
}

@Article{	  malossi-blanco-deparis-quarteroni-11,
  Author	= {Malossi, A. Cristiano I. and Blanco, Pablo J. and Deparis,
		  Simone and Quarteroni, Alfio},
  Title		= {Algorithms for the partitioned solution of weakly coupled
		  fluid models for cardiovascular flows},
  Journal	= {International Journal for Numerical Methods in Biomedical
		  Engineering},
  Volume	= {27},
  Number	= {12},
  Publisher	= {John Wiley & Sons, Ltd},
  ISSN		= {2040-7947},
  DOI		= {10.1002/cnm.1457},
  Pages		= {2035--2057},
  Keywords	= {domain decomposition, parallel algorithms, NavierâStokes
		  equations, geometrical multiscale, Newton method,
		  haemodynamics},
  Year		= {2011},
  Abstract	= {}
}

###Article{	  malossi-blanco-deparis-quarteroni-11,
  Author	= {Malossi, A. Cristiano I. and Blanco, Pablo J. and Deparis,
		  Simone and Quarteroni, Alfio},
  Title		= {Algorithms for the partitioned solution of weakly coupled
		  fluid models for cardiovascular flows},
  Journal	= {International Journal for Numerical Methods in Biomedical
		  Engineering},
  Volume	= {27},
  Number	= {12},
  Publisher	= {John Wiley & Sons, Ltd},
  ISSN		= {2040-7947},
  URL		= {http://dx.doi.org/10.1002/cnm.1457},
  DOI		= {10.1002/cnm.1457},
  Pages		= {2035--2057},
  Keywords	= {domain decomposition, parallel algorithms, NavierâStokes
		  equations, geometrical multiscale, Newton method,
		  haemodynamics},
  Year		= {2011},
  Abstract	= {}
}

@Article{	  marcati-96,
  Author	= {Marcati, P.},
  Journal	= {Diff. and Int. Eq.},
  Number	= {4},
  Pages		= {827-848},
  Title		= {Weak solutions to a nonlinear partial differential
		  equation of mixed type},
  Volume	= {9},
  Year		= {1996}
}

###Article{	  marcati-96,
  Author	= {Marcati, P.},
  Journal	= {Diff. and Int. Eq.},
  Number	= {4},
  Pages		= {827-848},
  Title		= {Weak solutions to a nonlinear partial differential
		  equation of mixed type},
  Volume	= {9},
  Year		= {1996}
}

@Article{	  mariappan-etal-10,
  Author	= {Mariappan, Yogesh K. and Glaser, Kevin J. and Ehman,
		  Richard L.},
  Title		= {Magnetic resonance elastography: A review},
  Journal	= {Clinical Anatomy},
  Volume	= {23},
  Number	= {5},
  Publisher	= {Wiley Subscription Services, Inc., A Wiley Company},
  ISSN		= {1098-2353},
  DOI		= {10.1002/ca.21006},
  Pages		= {497--511},
  Keywords	= {elasticity imaging, palpation, mechanical properties,
		  shear stiffness},
  Year		= {2010}
}

###Article{	  mariappan-etal-10,
  Author	= {Mariappan, Yogesh K. and Glaser, Kevin J. and Ehman,
		  Richard L.},
  Title		= {Magnetic resonance elastography: A review},
  Journal	= {Clinical Anatomy},
  Volume	= {23},
  Number	= {5},
  Publisher	= {Wiley Subscription Services, Inc., A Wiley Company},
  ISSN		= {1098-2353},
  URL		= {http://dx.doi.org/10.1002/ca.21006},
  DOI		= {10.1002/ca.21006},
  Pages		= {497--511},
  Keywords	= {elasticity imaging, palpation, mechanical properties,
		  shear stiffness},
  Year		= {2010}
}

@Article{	  markl2003jmri,
  Title		= {Time-resolved three-dimensional phase-contrast MRI.},
  Author	= {Markl, Michael and Chan, Frandics P. and Alley, Marcus T.
		  and Wedding, Kris L. and Draney, Mary T. and Elkins, Chris
		  J. and Parker, David W. and Wicker, Ryan and Taylor,
		  Charles A. and Herfkens, Robert J. and Pelc, Norbert J.},
  Journal	= {J Magn Reson Imaging},
  Year		= {2003},
  Month		= {Apr},
  Number	= {4},
  Pages		= {499--506},
  Volume	= {17},
  Abstract	= {To demonstrate the feasibility of a four-dimensional phase
		  contrast (PC) technique that permits spatial and temporal
		  coverage of an entire three-dimensional volume, to
		  quantitatively validate its accuracy against an established
		  time resolved two-dimensional PC technique to explore
		  advantages of the approach with regard to the
		  four-dimensional nature of the data.Time-resolved,
		  three-dimensional anatomical images were generated
		  simultaneously with registered three-directional velocity
		  vector fields. Improvements compared to prior methods
		  include retrospectively gated and respiratory compensated
		  image acquisition, interleaved flow encoding with freely
		  selectable velocity encoding (venc) along each spatial
		  direction, and flexible trade-off between temporal
		  resolution and total acquisition time.The implementation
		  was validated against established two-dimensional PC
		  techniques using a well-defined phantom, and successfully
		  applied in volunteer and patient examinations. Human
		  studies were performed after contrast administration in
		  order to compensate for loss of in-flow enhancement in the
		  four-dimensional approach.Advantages of the
		  four-dimensional approach include the complete spatial and
		  temporal coverage of the cardiovascular region of interest
		  and the ability to obtain high spatial resolution in all
		  three dimensions with higher signal-to-noise ratio compared
		  to two-dimensional methods at the same resolution. In
		  addition, the four-dimensional nature of the data offers a
		  variety of image processing options, such as magnitude and
		  velocity multi-planar reformation, three-directional vector
		  field plots, and velocity profiles mapped onto selected
		  planes of interest.},
  DOI		= {10.1002/jmri.10272},
  Institution	= {Department of Radiology, Stanford University, Stanford,
		  California 94304, USA. markl@s-word.stanford.edu},
  Keywords	= {Contrast Media; Coronary Circulation, physiology;
		  Feasibility Studies; Gadolinium DTPA; Humans; Imaging,
		  Three-Dimensional; Magnetic Resonance Imaging, methods;
		  Phantoms, Imaging},
  Language	= {eng},
  medline-pst	= {ppublish},
  owner		= {stoeckc},
  pmid		= {12655592},
  timestamp	= {2015.07.28},
  URL		= {http://dx.doi.org/10.1002/jmri.10272}
}

@Article{	  markl20124d,
  Title		= {4{D} flow {MRI}},
  Author	= {Markl, Michael and Frydrychowicz, Alex and Kozerke,
		  Sebastian and Hope, Mike and Wieben, Oliver},
  Journal	= {Journal of Magnetic Resonance Imaging},
  Volume	= {36},
  Number	= {5},
  Pages		= {1015--1036},
  Year		= {2012},
  Publisher	= {Wiley Online Library}
}

###Article{	  markl20124d,
  Title		= {4{D} flow {MRI}},
  Author	= {Markl, Michael and Frydrychowicz, Alex and Kozerke,
		  Sebastian and Hope, Mike and Wieben, Oliver},
  Journal	= {Journal of Magnetic Resonance Imaging},
  Volume	= {36},
  Number	= {5},
  Pages		= {1015--1036},
  Year		= {2012},
  Publisher	= {Wiley Online Library}
}

@Article{	  markl_4d_2012,
  Title		= {{{4D}} Flow {{MRI}}},
  Volume	= {36},
  Number	= {5},
  JournalTitle	= {Journal of Magnetic Resonance Imaging},
  Year		= {2012},
  Pages		= {1015--1036},
  Author	= {Markl, Michael and Frydrychowicz, Alex and Kozerke,
		  Sebastian and Hope, Mike and Wieben, Oliver}
}

@Article{	  markl_time-resolved_2003,
  Title		= {Time-Resolved Three-Dimensional Phase-Contrast {{MRI}}},
  Author	= {Markl, Michael and Chan, Frandics P. and Alley, Marcus T.
		  and Wedding, Kris L. and Draney, Mary T. and Elkins, Chris
		  J. and Parker, David W. and Wicker, Ryan and Taylor,
		  Charles A. and Herfkens, Robert J.},
  Year		= {2003},
  Volume	= {17},
  Pages		= {499--506},
  Journal	= {Journal of Magnetic Resonance Imaging: An Official Journal
		  of the International Society for Magnetic Resonance in
		  Medicine},
  Number	= {4}
}

@Article{	  marlevi2020vwerpt,
  Title		= {Non-invasive estimation of relative pressure in turbulent
		  flow using virtual work-energy},
  Author	= {Marlevi, David and Ha, Hojin and Dillon-Murphy, Desmond
		  and Fernandes, Joao F and Fovargue, Daniel and
		  Colarieti-Tosti, Massimiliano and Larsson, Matilda and
		  Lamata, Pablo and Figueroa, C Alberto and Ebbers, Tino and
		  others},
  Journal	= {Medical Image Analysis},
  Volume	= {60},
  Pages		= {101627},
  Year		= {2020},
  Publisher	= {Elsevier}
}

@Article{	  marlevi_estimation_2019,
  langid	= {english},
  Title		= {Estimation of {{Cardiovascular Relative Pressure Using
		  Virtual Work}}-{{Energy}}},
  Volume	= {9},
  ISSN		= {2045-2322},
  URL		= {http://www.nature.com/articles/s41598-018-37714-0},
  DOI		= {10.1038/s41598-018-37714-0},
  Number	= {1},
  JournalTitle	= {Scientific Reports},
  URLDate	= {2019-02-15},
  Year		= {2019-12},
  Author	= {Marlevi, David and Ruijsink, Bram and Balmus, Maximilian
		  and Dillon-Murphy, Desmond and Fovargue, Daniel and
		  Pushparajah, Kuberan and Bertoglio, Crist\'obal and
		  Colarieti-Tosti, Massimiliano and Larsson, Matilda and
		  Lamata, Pablo and Figueroa, C. Alberto and Razavi, Reza and
		  Nordsletten, David A.}
}

@Article{	  marom2013bav,
  Title		= {Fully coupled fluid--structure interaction model of
		  congenital bicuspid aortic valves: effect of asymmetry on
		  hemodynamics},
  Author	= {Marom, G. and Kim, H. and Rosenfeld, M. and Raanani, E.
		  and Haj-Ali, R.},
  Journal	= {Medical \& biological engineering \& computing},
  Volume	= {51},
  Number	= {8},
  Pages		= {839--848},
  Year		= {2013},
  Publisher	= {Springer}
}

@Article{	  maronnier-picasso-rappaz-99,
  Author	= {Maronnier, V. and Picasso, M. and Rappaz, J.},
  Journal	= {J. Comput. Phys.},
  Number	= {2},
  Pages		= {439--455},
  Title		= {Numerical simulation of free surface flows},
  Volume	= {155},
  Year		= {1999}
}

###Article{	  maronnier-picasso-rappaz-99,
  Author	= {Maronnier, V. and Picasso, M. and Rappaz, J.},
  Journal	= {J. Comput. Phys.},
  Number	= {2},
  Pages		= {439--455},
  Title		= {Numerical simulation of free surface flows},
  Volume	= {155},
  Year		= {1999}
}

@Article{	  martin-clement-decoene-gerbeau-05,
  Author	= {Martin, V. and Cl\'ement, F. and Decoene, A. and Gerbeau,
		  J-F.},
  Title		= {Parameter identification for a one-dimensional blood flow
		  model},
  Journal	= {ESAIM-Proceedings},
  Year		= {2005},
  Pages		= {174-200},
  DOI		= "10.1051/proc:2005014",
  Volume	= {14}
}

###Article{	  martin-clement-decoene-gerbeau-05,
  Author	= {Martin, V. and Cl\'ement, F. and Decoene, A. and Gerbeau,
		  J-F.},
  Title		= {Parameter identification for a one-dimensional blood flow
		  model},
  Journal	= {ESAIM-Proceedings},
  Year		= {2005},
  Pages		= {174-200},
  DOI		= "10.1051/proc:2005014",
  URL		= "http://dx.doi.org/10.1051/proc:2005014",
  Volume	= {14}
}

@Article{	  martin-witkowski-marty-98,
  Annote	= {mhd},
  Author	= {Martin Witkowski, L. and Marty, P.},
  code		= {mhd38},
  Journal	= {Eur. J. Mech., B/Fluids},
  Number	= {2},
  Pages		= {239-254},
  Title		= {Effect of a rotating magnetic field of arbitrary frequency
		  on a liquid metal column},
  Volume	= {17},
  Year		= {1998}
}

###Article{	  martin-witkowski-marty-98,
  Annote	= {mhd},
  Author	= {Martin Witkowski, L. and Marty, P.},
  code		= {mhd38},
  Journal	= {Eur. J. Mech., B/Fluids},
  Number	= {2},
  Pages		= {239-254},
  Title		= {Effect of a rotating magnetic field of arbitrary frequency
		  on a liquid metal column},
  Volume	= {17},
  Year		= {1998}
}

@Article{	  masson2008cha,
  Title		= {Characterization of arterial wall mechanical behavior and
		  stresses from human clinical data.},
  Author	= {Masson, I. and Boutouyrie, P. and Laurent, S. and
		  Humphrey, J.D. and Zidi, M.},
  Journal	= {Journal of Biomechanics},
  Year		= {2008},
  Abstract	= {This paper demonstrates the feasibility of material
		  identification and wall stress computation for human common
		  carotid arteries based on non-invasive in vivo clinical
		  data: dynamical intraluminal pressure measured by
		  applanation tonometry, and medial diameter and
		  intimal-medial thickness measured by high-resolution
		  ultrasound echotracking. The mechanical behavior was
		  quantified assuming an axially pre-stretched, thick-walled,
		  cylindrical artery subjected to dynamical blood pressure
		  and perivascular constraints. The wall was further assumed
		  to be three-dimensional and to consist of a nonlinear,
		  hyperelastic, anisotropic, incompressible material with
		  smooth muscle activity and residual stresses. Mechanical
		  contributions by individual constituents-an
		  elastin-dominated matrix, collagen fibers, and vascular
		  smooth muscle-were accounted for using a previously
		  proposed microstructurally motivated constitutive relation.
		  The in vivo boundary value problem was solved
		  semi-analytically to compute the inner pressure during a
		  mean cardiac cycle. Using a nonlinear least-squares method,
		  optimal model parameters were determined by minimizing
		  differences between computed and measured inner pressures
		  over a mean cardiac cycle. The fit-to-data from two healthy
		  patients was very good and the predicted radial,
		  circumferential, and axial stretch and stress fields were
		  sensible. Hence, the proposed approach was able to identify
		  complex geometric and material parameters directly from
		  non-invasive in vivo human data.}
}

###Article{	  masson2008cha,
  Title		= {Characterization of arterial wall mechanical behavior and
		  stresses from human clinical data.},
  Author	= {Masson, I. and Boutouyrie, P. and Laurent, S. and
		  Humphrey, J.D. and Zidi, M.},
  Journal	= {Journal of Biomechanics},
  Year		= {2008},
  Abstract	= {This paper demonstrates the feasibility of material
		  identification and wall stress computation for human common
		  carotid arteries based on non-invasive in vivo clinical
		  data: dynamical intraluminal pressure measured by
		  applanation tonometry, and medial diameter and
		  intimal-medial thickness measured by high-resolution
		  ultrasound echotracking. The mechanical behavior was
		  quantified assuming an axially pre-stretched, thick-walled,
		  cylindrical artery subjected to dynamical blood pressure
		  and perivascular constraints. The wall was further assumed
		  to be three-dimensional and to consist of a nonlinear,
		  hyperelastic, anisotropic, incompressible material with
		  smooth muscle activity and residual stresses. Mechanical
		  contributions by individual constituents-an
		  elastin-dominated matrix, collagen fibers, and vascular
		  smooth muscle-were accounted for using a previously
		  proposed microstructurally motivated constitutive relation.
		  The in vivo boundary value problem was solved
		  semi-analytically to compute the inner pressure during a
		  mean cardiac cycle. Using a nonlinear least-squares method,
		  optimal model parameters were determined by minimizing
		  differences between computed and measured inner pressures
		  over a mean cardiac cycle. The fit-to-data from two healthy
		  patients was very good and the predicted radial,
		  circumferential, and axial stretch and stress fields were
		  sensible. Hence, the proposed approach was able to identify
		  complex geometric and material parameters directly from
		  non-invasive in vivo human data.}
}

@Book{		  matlab2013,
  Year		= {2013},
  Author	= {MATLAB},
  Title		= {version 8.2.0.701 (R2013b)},
  Publisher	= {The MathWorks Inc.},
  Address	= {Natick, Massachusetts}
}

@InProceedings{	  matthies-steindorf-01,
  Author	= {Matthies, H. G. and Steindorf, J.},
  BookTitle	= {Computational Fluid and Solid Mechanics},
  code		= {fsi6},
  Editor	= {K.J. Bathe},
  Pages		= {1317-1319},
  Publisher	= {Elsevier},
  Title		= {How to make weak coupling strong},
  Year		= {2001}
}

###InProceedings{ matthies-steindorf-01,
  Author	= {Matthies, H. G. and Steindorf, J.},
  BookTitle	= {Computational Fluid and Solid Mechanics},
  code		= {fsi6},
  Editor	= {K.J. Bathe},
  Pages		= {1317-1319},
  Publisher	= {Elsevier},
  Title		= {How to make weak coupling strong},
  Year		= {2001}
}

@Article{	  matthies-steindorf-02,
  Author	= {Matthies, H.G. and Steindorf, J.},
  code		= {fsi7},
  Journal	= {Comp. \& Struct.},
  Number	= {27--30},
  Pages		= {1991--1999},
  Title		= {Partitioned but strongly coupled iteration schemes for
		  nonlinear fluid-structure interaction},
  Volume	= {80},
  Year		= {2002}
}

###Article{	  matthies-steindorf-02,
  Author	= {Matthies, H.G. and Steindorf, J.},
  code		= {fsi7},
  Journal	= {Comp. \& Struct.},
  Number	= {27--30},
  Pages		= {1991--1999},
  Title		= {Partitioned but strongly coupled iteration schemes for
		  nonlinear fluid-structure interaction},
  Volume	= {80},
  Year		= {2002}
}

@TechReport{	  matthies-steindorf-02b,
  Author	= {Matthies, H.G. and Steindorf, J.},
  Institution	= {TU Braunschweig},
  Title		= {Strong coupling methods},
  Year		= {2002}
}

###TechReport{	  matthies-steindorf-02b,
  Author	= {Matthies, H.G. and Steindorf, J.},
  Institution	= {TU Braunschweig},
  Title		= {Strong coupling methods},
  Year		= {2002}
}

@Article{	  matthies-steindorf-02c,
  Author	= {Matthies, H.G. and Steindorf, J.},
  code		= {fsi7},
  Journal	= {Comp. \& Struct.},
  Number	= {27--30},
  Pages		= {1991--1999},
  Title		= {Partitioned but strongly coupled iteration schemes for
		  nonlinear fluid-structure interaction},
  Volume	= {80},
  Year		= {2002}
}

###Article{	  matthies-steindorf-02c,
  Author	= {Matthies, H.G. and Steindorf, J.},
  code		= {fsi7},
  Journal	= {Comp. \& Struct.},
  Number	= {27--30},
  Pages		= {1991--1999},
  Title		= {Partitioned but strongly coupled iteration schemes for
		  nonlinear fluid-structure interaction},
  Volume	= {80},
  Year		= {2002}
}

@Article{	  matthies-steindorf-03,
  Author	= {Matthies, H.G. and Steindorf, J. },
  Journal	= {Comp. \& Struct.},
  Pages		= {805-812},
  Title		= {Partitioned strong coupling algorithms for fluid-structure
		  interaction},
  Volume	= {81},
  Year		= {2003}
}

###Article{	  matthies-steindorf-03,
  Author	= {Matthies, H.G. and Steindorf, J. },
  Journal	= {Comp. \& Struct.},
  Pages		= {805-812},
  Title		= {Partitioned strong coupling algorithms for fluid-structure
		  interaction},
  Volume	= {81},
  Year		= {2003}
}

@Article{	  maury-96,
  Author	= {Maury, B.},
  Journal	= {Comp. Fluid. Dyn.},
  Pages		= {175-188},
  Title		= {Characteristics {ALE} methods for the unsteady {3D
		  Navier-Stokes} equations with a free surface},
  Volume	= 6,
  Year		= 1996
}

###Article{	  maury-96,
  Author	= {Maury, B.},
  Journal	= {Comp. Fluid. Dyn.},
  Pages		= {175-188},
  Title		= {Characteristics {ALE} methods for the unsteady {3D
		  Navier-Stokes} equations with a free surface},
  Volume	= 6,
  Year		= 1996
}

@Article{	  maury-99,
  Author	= {Maury, B.},
  Journal	= {J. Comput. Phys.},
  Number	= {2},
  Pages		= {325--351},
  Title		= {Direct simulations of {$2$}{D} fluid-particle flows in
		  biperiodic domains},
  Volume	= {156},
  Year		= {1999}
}

###Article{	  maury-99,
  Author	= {Maury, B.},
  Journal	= {J. Comput. Phys.},
  Number	= {2},
  Pages		= {325--351},
  Title		= {Direct simulations of {$2$}{D} fluid-particle flows in
		  biperiodic domains},
  Volume	= {156},
  Year		= {1999}
}

@Article{	  maynewmann1998pbmb,
  Title		= {Homogenization modeling for the mechanics of perfused
		  myocardium},
  Author	= {May-Newmann, Karen and McCulloch, Andrew},
  Journal	= {Progress in Biophysics and Molecular Biology},
  Year		= {0079},
  Pages		= {463--481},
  Volume	= {69},
  BookTitle	= {Progress in Biophysics and Molecular Biology},
  File		= {:MayNewmann1998PBMB.pdf:PDF},
  Keywords	= {Perfusion, Coronary artery, Microvessels, Coronary blood
		  flow},
  review	= {Pro g r e s s i n
		  
		  Biophysics & Molecular
		  
		  Biology PERGAMON Progress in Biophysics & Molecular Biology
		  69 (1998) 463?481
		  
		  Homogenization modeling for the mechanics of perfused
		  myocardium
		  
		  Karen May-Newman 1, Andrew D. McCulloch *
		  
		  Department of Bioengineering, University of California San
		  Diego, 9500 Gilman Drive, La Jolla, CA 92093-0412, USA
		  
		  Abstract
		  
		  Altered coronary perfusion can change the apparent
		  diastolic stiÂness of ventricular myocardium?the ?garden
		  hose? eÂect. Our recent findings showed that myocardial
		  strains are reduced during ventricular filling, primarily
		  along the directions transverse to the coronary
		  microvessels. In this article, we review hypotheses and
		  theoretical models regarding the role that regional wall
		  stress plays in the mechanical interaction between
		  myocardium and coronary circulation. Various mechanisms
		  have been used to explain the eÂects of the tissue stress
		  on coronary flow, as well as the eÂect of coronary
		  dynamics on myocardial mechanics. Many models of coronary
		  pressure-flow relations using lumped parameter circuit
		  analogs. Poroelasticity and swelling theories have been
		  used to model the mechanics of perfused muscle. Here, we
		  describe a new mathematical model of the mechanics of
		  perfused myocardium derived using homogenization theory. In
		  this model, perfused myocardium is treated as a nonlinear
		  anisotropic elastic solid embedded with cylindrical vessels
		  of known distensibility. The solid compartment is
		  incompressible but the vascular compartment may change
		  volume according to a simple relation between vessel
		  diameter and perfusion pressure. The work done by the
		  perfusion pressure in changing vascular volume contributes
		  to the macroscopic strain energy and hence aÂects the
		  stress and stiÂness of the composite. Conversely, the
		  stress in the tissue aÂects microvessel diameter and
		  volume, since tractions transverse to the vessel axis
		  oppose the internal blood pressure. Finite element
		  simulations of passive filling show good agreement of model
		  with experimental results. # 1998 Elsevier Science Ltd. All
		  rights reserved.
		  
		  Keywords: Stress; Strain; Coronary artery; Microvessels;
		  Coronary blood flow
		  
		  * Corresponding author. Fax: +1-619-534-2547; E-mail:
		  amcculloch@ucsd.edu 1 Present address: Alliance
		  Pharmaceutical Corp., San Diego, CA 92121, USA.
		  
		  0079-6107/98/$19.00 # 1998 Elsevier Science Ltd. All rights
		  reserved. PII: S0079-6107(98)00020-0}
}

@Article{	  mayo2009radiation,
  Title		= {Radiation dose in cardiac CT},
  Author	= {Mayo, John R and Leipsic, Jonathon A},
  Journal	= {American journal of roentgenology},
  Volume	= {192},
  Number	= {3},
  Pages		= {646--653},
  Year		= {2009},
  Publisher	= {Am Roentgen Ray Soc}
}

@Article{	  mcalister2007jama,
  Title		= {Cardiac resynchronization therapy for patients with left
		  ventricular systolic dysfunction: A systematic review},
  Author	= {McAlister, Finlay A. and Ezekowitz, Justin and Hooton,
		  Nicola and et al},
  Journal	= {JAMA},
  Year		= {2007},
  Number	= {22},
  Pages		= {2502-2514},
  Volume	= {297},
  DOI		= {10.1001/jama.297.22.2502},
  EPrint	= {/data/Journals/JAMA/5174/jcr70006_2502_2514.pdf},
  File		= {mcalister07.pdf:mcalister07.pdf:PDF},
  timestamp	= {2015/09/14},
  URL		= { + http://dx.doi.org/10.1001/jama.297.22.2502}
}

@Article{	  mcgill_preventing_2008,
  langid	= {english},
  Title		= {Preventing Heart Disease in the 21st Century: Implications
		  of the {{Pathobiological Determinants}} of
		  {{Atherosclerosis}} in {{Youth}} ({{PDAY}}) Study},
  Volume	= {117},
  ISSN		= {1524-4539},
  DOI		= {10.1161/CIRCULATIONAHA.107.717033},
  ShortTitle	= {Preventing Heart Disease in the 21st Century},
  Number	= {9},
  JournalTitle	= {Circulation},
  ShortJournal	= {Circulation},
  Year		= {2008-03-04},
  Pages		= {1216-1227},
  Author	= {McGill, Henry C. and McMahan, C. Alex and Gidding, Samuel
		  S.},
  EPrintType	= {pmid},
  EPrint	= {18316498}
}

@Article{	  mckay1986circ,
  Title		= {Left ventricular remodeling after myocardial infarction: a
		  corollary to infarct expansion.},
  Author	= {McKay, R G and Pfeffer, M A and Pasternak, R C and Markis,
		  J E and Come, P C and Nakao, S and Alderman, J D and
		  Ferguson, J J and Safian, R D and Grossman, W},
  Journal	= {Circulation},
  Year		= {1986},
  Number	= {4},
  Pages		= {693-702},
  Volume	= {74},
  Abstract	= {Dilatation of infarcted segments (infarct expansion) may
		  occur during recovery from myocardial infarction, but the
		  fate of noninfarcted segments is uncertain. Accordingly,
		  left ventricular geometric changes were assessed by left
		  ventricular angiography and M mode echocardiography on
		  admission and 2 weeks later in 30 patients with their first
		  acute transmural myocardial infarction. All patients
		  demonstrated chest pain, ST segment elevation with
		  subsequent development of Q waves (15 anterior, 15
		  inferior), and elevation of cardiac enzymes. Sequential
		  left ventricular angiographic and hemodynamic findings were
		  available in these patients by virtue of their
		  participation in a study of thrombolysis in acute
		  myocardial infarction. By that study design, all patients
		  treated successfully with thrombolytic therapy and
		  demonstrating improvement of flow in an occluded coronary
		  artery underwent repeat cardiac catheterization. At 2 weeks
		  there was a significant decrease in left ventricular and
		  pulmonary capillary wedge pressures (p less than .01),
		  whereas both left ventricular end-diastolic (LVEDV) and
		  end-systolic (LVESV) volume indexes increased (p less than
		  .01). The increase in LVEDV correlated directly with the
		  percentage of the ventriculographic silhouette that was
		  akinetic or dyskinetic at the initial catheterization (r =
		  .71, p less than .001). To assess regional changes in both
		  infarcted and noninfarcted segments, serial endocardial
		  perimeter lengths of both the akinetic-dyskinetic segments
		  (infarction zone) and of the remainder of the cardiac
		  silhouette (noninfarction zone) were measured in all
		  patients who demonstrated at least a 20% increase in their
		  LVEDV at 2 weeks after myocardial infarction. Notably,
		  there was a mean increase of 13% in the endocardial
		  perimeter length of infarcted segments and a 19% increase
		  in the endocardial perimeter length of noninfarcted
		  segments. Serial M mode echocardiographic studies showed no
		  significant change in the wall thickness of noninfarcted
		  myocardial segments. Hemodynamic changes that occurred in
		  this subgroup of patients included significant decreases in
		  left ventricular end-diastolic and pulmonary capillary
		  wedge pressures (p less than .05) and significant increases
		  in angiographic cardiac index (p less than .01) and LVESV
		  index (p less than .01). We conclude that in patients who
		  manifest cardiac dilatation in the early convalescent
		  period after myocardial infarction, there is remodeling of
		  the entire left ventricle including infarct expansion of
		  akinetic-dyskinetic segments and volume-overload
		  hypertrophy of noninfarcted segments.(ABSTRACT TRUNCATED AT
		  400 WORDS)},
  DOI		= {10.1161/01.CIR.74.4.693},
  EPrint	= {http://circ.ahajournals.org/content/74/4/693.full.pdf+html},
  File		= {mckay86.pdf:mckay86.pdf:PDF},
  timestamp	= {2015/09/14},
  URL		= {http://circ.ahajournals.org/content/74/4/693.abstract}
}

@Article{	  mcmurray2012,
  Title		= {ESC guidelines for the diagnosis and treatment of acute
		  and chronic heart failure 2012: The Task Force for the
		  Diagnosis and Treatment of Acute and Chronic Heart Failure
		  2012 of the European Society of Cardiology. Developed in
		  collaboration with the Heart Failure Association (HFA) of
		  the ESC.},
  Author	= {McMurray, John J V. and Adamopoulos, Stamatis and Anker,
		  Stefan D. and Auricchio, Angelo and B{\"{o}}hm, Michael and
		  Dickstein, Kenneth and Falk, Volkmar and Filippatos,
		  Gerasimos and Fonseca, C{\^{a}}ndida and Gomez-Sanchez,
		  Miguel Angel and Jaarsma, Tiny and K{\o}ber, Lars and Lip,
		  Gregory Y H. and Maggioni, Aldo Pietro and Parkhomenko,
		  Alexander and Pieske, Burkert M. and Popescu, Bogdan A. and
		  R{\o}nnevik, Per K. and Rutten, Frans H. and Schwitter,
		  Juerg and Seferovic, Petar and Stepinska, Janina and
		  Trindade, Pedro T. and Voors, Adriaan A. and Zannad, Faiez
		  and Zeiher, Andreas and , Task Force for the Diagnosis and
		  Treatment of Acute and Chronic Heart Failure 2012 of the
		  European Society of Cardiology and Bax, Jeroen J. and
		  Baumgartner, Helmut and Ceconi, Claudio and Dean, Veronica
		  and Deaton, Christi and Fagard, Robert and Funck-Brentano,
		  Christian and Hasdai, David and Hoes, Arno and Kirchhof,
		  Paulus and Knuuti, Juhani and Kolh, Philippe and McDonagh,
		  Theresa and Moulin, Cyril and Popescu, Bogdan A. and
		  Reiner, Zeljko and Sechtem, Udo and Sirnes, Per Anton and
		  Tendera, Michal and Torbicki, Adam and Vahanian, Alec and
		  Windecker, Stephan and McDonagh, Theresa and Sechtem, Udo
		  and Bonet, Luis Almenar and Avraamides, Panayiotis and {Ben
		  Lamin}, Hisham A. and Brignole, Michele and Coca, Antonio
		  and Cowburn, Peter and Dargie, Henry and Elliott, Perry and
		  Flachskampf, Frank Arnold and Guida, Guido Francesco and
		  Hardman, Suzanna and Iung, Bernard and Merkely, Bela and
		  Mueller, Christian and Nanas, John N. and Nielsen, Olav
		  Wendelboe and Orn, Stein and Parissis, John T. and
		  Ponikowski, Piotr and , E. S. C Committee for Practice
		  Guidelines},
  Journal	= {Eur J Heart Fail},
  Year		= {2012},
  Month		= {Aug},
  Number	= {8},
  Pages		= {803--869},
  Volume	= {14},
  Institution	= {Glasgow G12 8QQ, UK. john.mcmurray@glasgow.ac.uk},
  Keywords	= {Algorithms; Antihypertensive Agents, therapeutic use;
		  Cardiotonic Agents, therapeutic use; Europe; Heart Failure,
		  diagnosis/drug therapy; Humans; Natriuretic Peptides;
		  Renin-Angiotensin System; Societies, Medical; Stroke
		  Volume; Ventricular Function, Left},
  Language	= {eng},
  medline-pst	= {ppublish},
  owner		= {stoeckc},
  pmid		= {22828712},
  timestamp	= {2015.07.24}
}

@Book{		  medscape,
  Title		= {{Medscape Reference. Coarctation of the Aorta}},
  Author	= {Syamasundar, R. and Seib, P.},
  Year		= {2011}
}

###Book{	  medscape,
  Title		= {{Medscape Reference. Coarctation of the Aorta}},
  Author	= {Syamasundar, R. and Seib, P.},
  Address	= {\url{http://emedicine.medscape.com/article/895502-overview}},
  Year		= {2011}
}

@InProceedings{	  meier_non-invasive_2010,
  Title		= {Non-Invasive {{4D}} Blood Flow and Pressure Quantification
		  in Central Blood Vessels via {{PC}}-{{MRI}}},
  BookTitle	= {Computing in {{Cardiology}}, 2010},
  Publisher	= {{IEEE}},
  Year		= {2010},
  Pages		= {903--906},
  Author	= {Meier, Sebastian and Hennemuth, Anja and Friman, Ola and
		  Bock, Jelena and Markl, Michael and Preusser, Tobias}
}

@Article{	  meir-95,
  Annote	= {mhd, existence},
  Author	= {Meir, A. J.},
  code		= {mhd4},
  Journal	= {Num. Meth. Partial Diff. Eq.},
  Pages		= {311-337},
  Title		= {Thermally coupled, stationary, incompressible MHD flow;
		  existence, uniqueness, and finite element approximation},
  Volume	= {11},
  Year		= {1995}
}

###Article{	  meir-95,
  Annote	= {mhd, existence},
  Author	= {Meir, A. J.},
  code		= {mhd4},
  Journal	= {Num. Meth. Partial Diff. Eq.},
  Pages		= {311-337},
  Title		= {Thermally coupled, stationary, incompressible MHD flow;
		  existence, uniqueness, and finite element approximation},
  Volume	= {11},
  Year		= {1995}
}

@Article{	  meir-schmidt-94,
  Annote	= {mhd, existence},
  Author	= {Meir, A.J. and Schmidt, P.G.},
  code		= {mhd5},
  Journal	= {Appl. Math. Comp.},
  Pages		= {95-109},
  Title		= {A velocity-current formulation for stationary {MHD} flow},
  Volume	= {65},
  Year		= {1994}
}

###Article{	  meir-schmidt-94,
  Annote	= {mhd, existence},
  Author	= {Meir, A.J. and Schmidt, P.G.},
  code		= {mhd5},
  Journal	= {Appl. Math. Comp.},
  Pages		= {95-109},
  Title		= {A velocity-current formulation for stationary {MHD} flow},
  Volume	= {65},
  Year		= {1994}
}

@Article{	  meir-schmidt-96,
  Annote	= {mhd, boundary integral},
  Author	= {Meir, A.J. and Schmidt, P.G.},
  code		= {mhd6},
  Journal	= {Nonlinear Anal., Theo. Meth. Appl.},
  Number	= {4},
  Pages		= {659-689},
  Title		= {Variational methods for stationary {MHD} flow under
		  natural interface conditions},
  Volume	= {26},
  Year		= {1996}
}

###Article{	  meir-schmidt-96,
  Annote	= {mhd, boundary integral},
  Author	= {Meir, A.J. and Schmidt, P.G.},
  code		= {mhd6},
  Journal	= {Nonlinear Anal., Theo. Meth. Appl.},
  Number	= {4},
  Pages		= {659-689},
  Title		= {Variational methods for stationary {MHD} flow under
		  natural interface conditions},
  Volume	= {26},
  Year		= {1996}
}

@Article{	  meir-schmidt-99,
  Annote	= {mhd, finite element},
  Author	= {Meir, A.J. and Schmidt, P.G.},
  code		= {mhd10},
  Journal	= {SIAM J. Numer. Anal.},
  Number	= {4},
  Pages		= {1304-1332},
  Title		= {Analysis and numerical approximation of a stationnary
		  {MHD} flow problem with nonideal boundary},
  Volume	= {36},
  Year		= {1999}
}

###Article{	  meir-schmidt-99,
  Annote	= {mhd, finite element},
  Author	= {Meir, A.J. and Schmidt, P.G.},
  code		= {mhd10},
  Journal	= {SIAM J. Numer. Anal.},
  Number	= {4},
  Pages		= {1304-1332},
  Title		= {Analysis and numerical approximation of a stationnary
		  {MHD} flow problem with nonideal boundary},
  Volume	= {36},
  Year		= {1999}
}

@Article{	  mendelsohn1994late,
  Title		= {Late follow-up of balloon angioplasty in children with a
		  native coarctation of the aorta},
  Author	= {Mendelsohn, Alan M and Lloyd, Thomas R and Crowley, Dennis
		  C and Sandhu, Satinder K and Kocis, Keith C and Beekman,
		  Robert H},
  Journal	= {The American journal of cardiology},
  Volume	= {74},
  Number	= {7},
  Pages		= {696--700},
  Year		= {1994},
  Publisher	= {Elsevier}
}

###Article{	  mendelsohn1994late,
  Title		= {Late follow-up of balloon angioplasty in children with a
		  native coarctation of the aorta},
  Author	= {Mendelsohn, Alan M and Lloyd, Thomas R and Crowley, Dennis
		  C and Sandhu, Satinder K and Kocis, Keith C and Beekman,
		  Robert H},
  Journal	= {The American journal of cardiology},
  Volume	= {74},
  Number	= {7},
  Pages		= {696--700},
  Year		= {1994},
  Publisher	= {Elsevier}
}

@Article{	  menon2012coupled,
  Title		= {A coupled experimental and computational approach to
		  quantify deleterious hemodynamics, vascular alterations,
		  and mechanisms of long-term morbidity in response to aortic
		  coarctation},
  Author	= {Menon, Arjun and Wendell, David C and Wang, Hongfeng and
		  Eddinger, Thomas J and Toth, Jeffrey M and Dholakia, Ronak
		  J and Larsen, Paul M and Jensen, Eric S and LaDisa, John
		  F},
  Journal	= {Journal of pharmacological and toxicological methods},
  Volume	= {65},
  Number	= {1},
  Pages		= {18--28},
  Year		= {2012},
  Publisher	= {Elsevier}
}

###Article{	  menon2012coupled,
  Title		= {A coupled experimental and computational approach to
		  quantify deleterious hemodynamics, vascular alterations,
		  and mechanisms of long-term morbidity in response to aortic
		  coarctation},
  Author	= {Menon, Arjun and Wendell, David C and Wang, Hongfeng and
		  Eddinger, Thomas J and Toth, Jeffrey M and Dholakia, Ronak
		  J and Larsen, Paul M and Jensen, Eric S and LaDisa, John
		  F},
  Journal	= {Journal of pharmacological and toxicological methods},
  Volume	= {65},
  Number	= {1},
  Pages		= {18--28},
  Year		= {2012},
  Publisher	= {Elsevier}
}

@Article{	  menzel2012mrc,
  Title		= {Frontiers in growth and remodeling },
  Author	= {Andreas Menzel and Ellen Kuhl},
  Journal	= {Mechanics Research Communications },
  Year		= {2012},
  Note		= {Recent Advances in the Biomechanics of Growth and
		  Remodeling },
  Pages		= {1 - 14},
  Volume	= {42},
  Abstract	= {Unlike common engineering materials, living matter can
		  autonomously respond to environmental changes. Living
		  structures can grow stronger, weaker, larger, or smaller
		  within months, weeks, or days as a result of a continuous
		  microstructural turnover and renewal. Hard tissues can
		  adapt by increasing their density and grow strong. Soft
		  tissues can adapt by increasing their volume and grow
		  large. For more than three decades, the mechanics community
		  has actively contributed to understand the phenomena of
		  growth and remodeling from a mechanistic point of view.
		  However, to date, there is no single, unified
		  characterization of growth, which is equally accepted by
		  all scientists in the field. Here we shed light on the
		  continuum modeling of growth and remodeling of living
		  matter, and give a comprehensive overview of historical
		  developments and trends. We provide a state-of-the-art
		  review of current research highlights, and discuss
		  challenges and potential future directions. Using the
		  example of volumetric growth, we illustrate how we can
		  establish and utilize growth theories to characterize the
		  functional adaptation of soft living matter. We anticipate
		  this review to be the starting point for critical
		  discussions and future research in growth and remodeling,
		  with a potential impact on life science and medicine. },
  DOI		= {http://dx.doi.org/10.1016/j.mechrescom.2012.02.007},
  File		= {menzel12.pdf:menzel12.pdf:PDF},
  ISSN		= {0093-6413},
  Keywords	= {Living matter},
  URL		= {http://www.sciencedirect.com/science/article/pii/S0093641312000225}
}

@Unpublished{	  metier-02,
  Author	= {M{\'e}tier, P.},
  Note		= {Universit{\'e} Paris 6},
  Title		= {PhD in preparation}
}

###Unpublished{	  metier-02,
  Author	= {M{\'e}tier, P.},
  Note		= {Universit{\'e} Paris 6},
  Title		= {PhD in preparation}
}

@Unpublished{	  meyer-98,
  Author	= {Meyer, Y.},
  Note		= {to appear},
  Title		= {Wavelets, paraproducts and {Navier-Stokes} equations},
  Year		= {1998}
}

###Unpublished{	  meyer-98,
  Author	= {Meyer, Y.},
  Note		= {to appear},
  Title		= {Wavelets, paraproducts and {Navier-Stokes} equations},
  Year		= {1998}
}

@Article{	  michler-hulshoff-van-brummelen-de-borst-04,
  Author	= {Michler, C. and Hulshoff, S.J. and van Brummelen, E.H. and
		  de Borst, R.},
  Journal	= {Comp. \& Fluids},
  Number	= {5-6},
  Pages		= {839-848},
  Title		= {A monolithic approach to fluid-structure interaction},
  Year		= {2004}
}

###Article{	  michler-hulshoff-van-brummelen-de-borst-04,
  Author	= {Michler, C. and Hulshoff, S.J. and van Brummelen, E.H. and
		  de Borst, R.},
  Journal	= {Comp. \& Fluids},
  Number	= {5-6},
  Pages		= {839-848},
  Title		= {A monolithic approach to fluid-structure interaction},
  Year		= {2004}
}

@Article{	  michler-van-brummelen-de-borst-05,
  Author	= {Michler, C. and van Brummelen, E.H. and de Borst, R.},
  Journal	= {Int. J. Num. Meth. Fluids},
  Number	= {10-11},
  Pages		= {1189-1195},
  Title		= {An interface {Newton-Krylov} solver for fluid-structure
		  interaction},
  Volume	= {47},
  Year		= {2005}
}

###Article{	  michler-van-brummelen-de-borst-05,
  Author	= {Michler, C. and van Brummelen, E.H. and de Borst, R.},
  Journal	= {Int. J. Num. Meth. Fluids},
  Number	= {10-11},
  Pages		= {1189-1195},
  Title		= {An interface {Newton-Krylov} solver for fluid-structure
		  interaction},
  Volume	= {47},
  Year		= {2005}
}

@Article{	  michler2013ijnmbe,
  Title		= {A computationally efficient framework for the simulation
		  of cardiac perfusion using a multi-compartment Darcy
		  porous-media flow model},
  Author	= {Michler, C. and Cookson, A. N. and Chabiniok, R. and Hyde,
		  E. and Lee, J. and Sinclair, M. and Sochi, T. and Goyal, A.
		  and Vigueras, G. and Nordsletten, D. A. and et al.},
  Journal	= {International Journal for Numerical Methods in Biomedical
		  Engineering},
  Year		= {2013},
  Month		= {Oct},
  Number	= {2},
  Pages		= {217--232},
  Volume	= {29},
  DOI		= {10.1002/cnm.2520},
  File		= {:Michler2012IJNMBE.pdf:PDF},
  ISSN		= {2040-7939},
  Keywords	= {Perfusion, Darcy, multicompartment},
  Publisher	= {Wiley-Blackwell},
  URL		= {http://dx.doi.org/10.1002/cnm.2520}
}

@Article{	  miglio-quarteroni-saleri-99,
  Author	= {Miglio, E. and Quarteroni, A. and Saleri, F.},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Number	= {3-4},
  Pages		= {355--369},
  Title		= {Finite element approximation of quasi-3{D} shallow water
		  equations},
  Volume	= {174},
  Year		= {1999}
}

###Article{	  miglio-quarteroni-saleri-99,
  Author	= {Miglio, E. and Quarteroni, A. and Saleri, F.},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Number	= {3-4},
  Pages		= {355--369},
  Title		= {Finite element approximation of quasi-3{D} shallow water
		  equations},
  Volume	= {174},
  Year		= {1999}
}

@InProceedings{	  mihalef_model-based_2014,
  langid	= {english},
  Title		= {Model-{{Based Estimation}} of {{4D Relative Pressure Map}}
		  from {{4D Flow MR Images}}},
  ISBN		= {978-3-642-54268-8},
  Abstract	= {We propose a new framework for 4D relative pressure map
		  computations from 4D flow MRI that uses enhanced geometric
		  models for the blood vessels and flow-aware surface and
		  volumetric tags. The enhanced geometric modeling provides
		  better accuracy compared to a simple voxelized mask, while
		  tagging of inlets and outlets allows imposing
		  physiologically meaningful boundary conditions,
		  contributing to more accurate pressure computations. An
		  integrated software suite for semi-automatic processing of
		  4D flow MR images, preparation and computation of the flow
		  parameters is presented. This enables a fast and intuitive
		  workflow, with accurate final results, ready in minutes.},
  BookTitle	= {Statistical {{Atlases}} and {{Computational Models}} of
		  the {{Heart}}. {{Imaging}} and {{Modelling Challenges}}},
  Series	= {Lecture {{Notes}} in {{Computer Science}}},
  Publisher	= {{Springer Berlin Heidelberg}},
  Year		= {2014},
  Pages		= {236-243},
  Author	= {Mihalef, Viorel and Rapaka, Saikiran and Gulsun, Mehmet
		  and Scorza, Angelo and Sharma, Puneet and Itu, Lucian and
		  Kamen, Ali and Barker, Alex and Markl, Michael and
		  Comaniciu, Dorin},
  Editor	= {Camara, Oscar and Mansi, Tommaso and Pop, Mihaela and
		  Rhode, Kawal and Sermesant, Maxime and Young, Alistair}
}

@InCollection{	  mikelic-00,
  Address	= {Berlin},
  Author	= {Mikeli{\'c}, A.},
  BookTitle	= {Filtration in porous media and industrial application
		  (Cetraro, 1998)},
  Pages		= {127--214},
  Publisher	= {Springer},
  Series	= {Lecture Notes in Math.},
  Title		= {Homogenization theory and applications to filtration
		  through porous media},
  Volume	= {1734},
  Year		= {2000}
}

###InCollection{  mikelic-00,
  Address	= {Berlin},
  Author	= {Mikeli{\'c}, A.},
  BookTitle	= {Filtration in porous media and industrial application
		  (Cetraro, 1998)},
  Pages		= {127--214},
  Publisher	= {Springer},
  Series	= {Lecture Notes in Math.},
  Title		= {Homogenization theory and applications to filtration
		  through porous media},
  Volume	= {1734},
  Year		= {2000}
}

@Article{	  milner-moore-rutt-steinman-98,
  Author	= {Milner, J.S and Moore, J.A. and Rutt, B.K. and Steinman,
		  D.A.},
  Journal	= {Journal of vascular surgery},
  Number	= {1},
  Pages		= {143-156},
  Title		= {Hemodynamics of human carotid artery bifurcations:
		  computational studies with models reconstructed from
		  magnetic resonance imaging of normal subjects},
  Volume	= {27},
  Year		= {1998}
}

###Article{	  milner-moore-rutt-steinman-98,
  Author	= {Milner, J.S and Moore, J.A. and Rutt, B.K. and Steinman,
		  D.A.},
  Journal	= {Journal of vascular surgery},
  Number	= {1},
  Pages		= {143-156},
  Title		= {Hemodynamics of human carotid artery bifurcations:
		  computational studies with models reconstructed from
		  magnetic resonance imaging of normal subjects},
  Volume	= {27},
  Year		= {1998}
}

@Article{	  minakowski_finite_2019,
  ArchivePrefix	= {arXiv},
  EPrintType	= {arxiv},
  EPrint	= {1902.07532},
  PrimaryClass	= {math.NA},
  Title		= {Finite {{Element Error Estimates}} under {{Geometric
		  Uncertainty}}},
  JournalTitle	= {arXiv e-prints},
  Date		= {2019-02},
  Pages		= {arXiv:1902.07532},
  Author	= {Minakowski, Piotr and Richter, Thomas},
  EID		= {arXiv:1902.07532},
  adsurl	= {https://ui.adsabs.harvard.edu/\#abs/2019arXiv190207532M},
  adsnote	= {Provided by the SAO/NASA Astrophysics Data System}
}

###Article{	  minakowski_finite_2019,
  ArchivePrefix	= {arXiv},
  EPrintType	= {arxiv},
  EPrint	= {1902.07532},
  PrimaryClass	= {math.NA},
  Title		= {Finite {{Element Error Estimates}} under {{Geometric
		  Uncertainty}}},
  JournalTitle	= {arXiv e-prints},
  Year		= {2019-02},
  Pages		= {arXiv:1902.07532},
  Author	= {Minakowski, Piotr and Richter, Thomas},
  EID		= {arXiv:1902.07532},
  adsurl	= {https://ui.adsabs.harvard.edu/\#abs/2019arXiv190207532M},
  adsnote	= {Provided by the SAO/NASA Astrophysics Data System}
}

@Article{	  miracle,
  Author	= {Abraham, W.T. and Fisher, W.G. and Smith, A.L. and et al},
  Journal	= {The New England Journal of Medicine},
  Pages		= {1845-1853},
  Title		= {Cardiac resynchronization in Chronic Heart Failure},
  Volume	= {346},
  Year		= {2002}
}

###Article{	  miracle,
  Author	= {Abraham, W.T. and Fisher, W.G. and Smith, A.L. and et al},
  Journal	= {The New England Journal of Medicine},
  Pages		= {1845-1853},
  Title		= {Cardiac resynchronization in Chronic Heart Failure},
  Volume	= {346},
  Year		= {2002}
}

@Article{	  miranville,
  Author	= {Miranville, A. and Wang, X.},
  Journal	= {Disc. and Cont. Dyn. syst.},
  Number	= {1},
  Pages		= {95-110},
  Title		= {Upper bound on the dimension of the attractor for
		  nonhomogeneous {Navier-Stokes} equations},
  Volume	= {2},
  Year		= {1996}
}

###Article{	  miranville,
  Author	= {Miranville, A. and Wang, X.},
  Journal	= {Disc. and Cont. Dyn. syst.},
  Number	= {1},
  Pages		= {95-110},
  Title		= {Upper bound on the dimension of the attractor for
		  nonhomogeneous {Navier-Stokes} equations},
  Volume	= {2},
  Year		= {1996}
}

@Article{	  mirzaee_mri-based_2017,
  langid	= {english},
  Title		= {{{MRI}}-Based Computational Hemodynamics in Patients with
		  Aortic Coarctation Using the Lattice {{Boltzmann}} Methods:
		  {{Clinical}} Validation Study},
  Volume	= {45},
  ISSN		= {1522-2586},
  URL		= {https://onlinelibrary.wiley.com/doi/abs/10.1002/jmri.25366},
  DOI		= {10.1002/jmri.25366},
  ShortTitle	= {{{MRI}}-Based Computational Hemodynamics in Patients with
		  Aortic Coarctation Using the Lattice {{Boltzmann}}
		  Methods},
  Abstract	= {Purpose To introduce a scheme based on a recent technique
		  in computational hemodynamics, known as the lattice
		  Boltzmann methods (LBM), to noninvasively measure pressure
		  gradients in patients with a coarctation of the aorta
		  (CoA). To provide evidence on the accuracy of the proposed
		  scheme, the computed pressure drop values are compared
		  against those obtained using the reference standard method
		  of catheterization. Materials and Methods Pre- and
		  posttreatment LBM-based pressure gradients for 12 patients
		  with CoA were simulated for the time point of peak systole
		  using the open source library OpenLB. Four-dimensional (4D)
		  flow-sensitive phase-contrast MRI at 1.5 Tesla was used to
		  acquire flow and to setup the simulation. The vascular
		  geometry was reconstructed using 3D whole-heart MRI.
		  Patients underwent pre- and postinterventional pressure
		  catheterization as a reference standard. Results There is a
		  significant linear correlation between the pretreatment
		  catheter pressure drops and those computed based on the LBM
		  simulation, , . The bias was -0.58 Â± 4.1 mmHg and was not
		  significant ( with a 95\% confidence interval (CI) of -3.22
		  to 2.06. For the posttreatment results, the bias was larger
		  and at -2.54 Â± 3.53 mmHg with a 95\% CI of -0.17 to -4.91
		  mmHg. Conclusion The results indicate a reasonable
		  agreement between the simulation results and the catheter
		  measurements. LBM-based computational hemodynamics can be
		  considered as an alternative to more traditional
		  computational fluid dynamics schemes for noninvasive
		  pressure calculations and can assist in diagnosis and
		  therapy planning. Level of Evidence: 3 J. Magn. Reson.
		  Imaging 2017;45:139â146.},
  Number	= {1},
  JournalTitle	= {Journal of Magnetic Resonance Imaging},
  URLDate	= {2019-01-29},
  Year		= {2017},
  Pages		= {139-146},
  Author	= {Mirzaee, Hanieh and Henn, Thomas and Krause, Mathias J.
		  and Goubergrits, Leonid and Schumann, Christian and
		  Neugebauer, Mathias and Kuehne, Titus and Preusser, Tobias
		  and Hennemuth, Anja}
}

@Book{		  modersitzki-04,
  Title		= {Numerical Methods for Image Registration},
  Author	= {Modersitzki, J.},
  Year		= {2004},
  Publisher	= {Oxford university press}
}

###Book{	  modersitzki-04,
  Title		= {Numerical Methods for Image Registration},
  Author	= {Modersitzki, J.},
  Year		= {2004},
  Publisher	= {Oxford university press}
}

@Article{	  moens-1878,
  Title		= {{Die Pulskurve}},
  Volume	= {},
  Number	= {},
  Journal	= {},
  Publisher	= {Leiden, The Netherlands:.J. Brill},
  Author	= {Moens, A.I.},
  Year		= {1878}
}

###Article{	  moens-1878,
  Title		= {{Die Pulskurve}},
  Volume	= {},
  URL		= {http://www.archive.org/details/diepulscurve00iseb},
  Number	= {},
  Journal	= {},
  Publisher	= {Leiden, The Netherlands:.J. Brill},
  Author	= {Moens, A.I.},
  Year		= {1878}
}

@Article{	  moghadam-bazilevs-etal-11,
  hal_id	= {hal-00650986},
  Title		= {{A comparison of outlet boundary treatments for prevention
		  of backflow divergence with relevance to blood flow
		  simulations}},
  Author	= {Moghadam, M. and Bazilevs, Y. and Hsia, T.-Y. and
		  Vignon-Clementel, I. and Marsden, A. and Modeling Of
		  Congenital Hearts Alliance Investigators, Mocha},
  Abstract	= {{Simulation divergence due to backflow is a common, but
		  not fully addressed, problem in three-dimensional
		  simulations of blood flow in the large vessels. Because
		  backflow is a naturally occurring physiologic phenomenon,
		  careful treatment is necessary to realistically model
		  backflow without artificially altering the local flow
		  dynamics. In this study, we quantitatively compare three
		  available methods for treatment of outlets to prevent
		  backflow divergence in finite element Navier-Stokes
		  solvers. The methods examined are (1) adding a
		  stabilization term to the boundary nodes formulation, (2)
		  constraining the velocity to be normal to the outlet, and
		  (3) using Lagrange multipliers to constrain the velocity
		  profile at all or some of the outlets. A modification to
		  the stabilization method is also discussed. Three model
		  problems, a short and long cylinder with an expansion, a
		  right-angle bend, and a patient-specific aorta model, are
		  used to evaluate and quantitatively compare these methods.
		  Detailed comparisons are made to evaluate robustness,
		  stability characteristics, impact on local and global flow
		  physics, computational cost, implementation effort, and
		  ease-of-use. The results show that the stabilization method
		  offers a promising alternative to previous methods, with
		  reduced effect on both local and global hemodynamics,
		  improved stability, little-to-no increase in computational
		  cost, and elimination of the need for tunable
		  parameters.}},
  Keywords	= {Neumann boundary conditions; Outflow stabilization;
		  Lagrange multipliers; Normal velocity constraint;
		  Patient-specific blood flow; Flow reversal; Navier-Stokes
		  FEM solver; Cardiovascular simulation},
  Language	= {Anglais},
  affiliation	= {Department of Mechanical and Aerospace Engineering - MAE ,
		  Department of Structural Engineering - UCSD , Great Ormond
		  Street Hospital for Children [London] - GOSH , Cardiac
		  Unit, Institute of Child Health - UCL , REO - INRIA
		  Rocquencourt},
  BookTitle	= {{Special issue on computational fluid mechanics and
		  fluid-structure interaction}},
  Publisher	= {Springer Verlag (Germany)},
  Pages		= {277-291},
  Journal	= {Computational Mechanics},
  Volume	= {48},
  Number	= {3 },
  audience	= {internationale },
  collaboration	= {EA cardio },
  DOI		= {10.1007/s00466-011-0599-0 },
  Year		= {2011}
}

###Article{	  moghadam-bazilevs-etal-11,
  hal_id	= {hal-00650986},
  URL		= {http://hal.inria.fr/hal-00650986},
  Title		= {{A comparison of outlet boundary treatments for prevention
		  of backflow divergence with relevance to blood flow
		  simulations}},
  Author	= {Moghadam, M. and Bazilevs, Y. and Hsia, T.-Y. and
		  Vignon-Clementel, I. and Marsden, A. and Modeling Of
		  Congenital Hearts Alliance Investigators, Mocha},
  Abstract	= {{Simulation divergence due to backflow is a common, but
		  not fully addressed, problem in three-dimensional
		  simulations of blood flow in the large vessels. Because
		  backflow is a naturally occurring physiologic phenomenon,
		  careful treatment is necessary to realistically model
		  backflow without artificially altering the local flow
		  dynamics. In this study, we quantitatively compare three
		  available methods for treatment of outlets to prevent
		  backflow divergence in finite element Navier-Stokes
		  solvers. The methods examined are (1) adding a
		  stabilization term to the boundary nodes formulation, (2)
		  constraining the velocity to be normal to the outlet, and
		  (3) using Lagrange multipliers to constrain the velocity
		  profile at all or some of the outlets. A modification to
		  the stabilization method is also discussed. Three model
		  problems, a short and long cylinder with an expansion, a
		  right-angle bend, and a patient-specific aorta model, are
		  used to evaluate and quantitatively compare these methods.
		  Detailed comparisons are made to evaluate robustness,
		  stability characteristics, impact on local and global flow
		  physics, computational cost, implementation effort, and
		  ease-of-use. The results show that the stabilization method
		  offers a promising alternative to previous methods, with
		  reduced effect on both local and global hemodynamics,
		  improved stability, little-to-no increase in computational
		  cost, and elimination of the need for tunable
		  parameters.}},
  Keywords	= {Neumann boundary conditions; Outflow stabilization;
		  Lagrange multipliers; Normal velocity constraint;
		  Patient-specific blood flow; Flow reversal; Navier-Stokes
		  FEM solver; Cardiovascular simulation},
  Language	= {Anglais},
  affiliation	= {Department of Mechanical and Aerospace Engineering - MAE ,
		  Department of Structural Engineering - UCSD , Great Ormond
		  Street Hospital for Children [London] - GOSH , Cardiac
		  Unit, Institute of Child Health - UCL , REO - INRIA
		  Rocquencourt},
  BookTitle	= {{Special issue on computational fluid mechanics and
		  fluid-structure interaction}},
  Publisher	= {Springer Verlag (Germany)},
  Pages		= {277-291},
  Journal	= {Computational Mechanics},
  Volume	= {48},
  Number	= {3 },
  audience	= {internationale },
  collaboration	= {EA cardio },
  DOI		= {10.1007/s00466-011-0599-0 },
  Year		= {2011}
}

@Article{	  moghadam-etal-11,
  Title		= "A modular numerical method for implicit 0D/3D coupling in
		  cardiovascular finite element simulations",
  Journal	= "Journal of Computational Physics",
  Volume	= "",
  Number	= "",
  Pages		= "",
  Year		= "2012",
  Note		= "",
  ISSN		= "0021-9991",
  DOI		= "10.1016/j.jcp.2012.07.035",
  Author	= "Moghadam, M.E. and Vignon-Clementel, I.E. and Figliola, R.
		  and Marsden, A.L.",
  Keywords	= "Multi-scale modeling"
}

###Article{	  moghadam-etal-11,
  Title		= "A modular numerical method for implicit 0D/3D coupling in
		  cardiovascular finite element simulations",
  Journal	= "Journal of Computational Physics",
  Volume	= "",
  Number	= "",
  Pages		= "",
  Year		= "2012",
  Note		= "",
  ISSN		= "0021-9991",
  DOI		= "10.1016/j.jcp.2012.07.035",
  URL		= "http://www.sciencedirect.com/science/article/pii/S0021999112004202",
  Author	= "Moghadam, M.E. and Vignon-Clementel, I.E. and Figliola, R.
		  and Marsden, A.L.",
  Keywords	= "Multi-scale modeling"
}

@Book{		  mohammadi-pironneau-94,
  Address	= {Paris},
  Author	= {Mohammadi, B. and Pironneau, O.},
  Publisher	= {Masson},
  Title		= {Analysis of the $k$-epsilon turbulence model},
  Year		= {1994}
}

###Book{	  mohammadi-pironneau-94,
  Address	= {Paris},
  Author	= {Mohammadi, B. and Pironneau, O.},
  Publisher	= {Masson},
  Title		= {Analysis of the $k$-epsilon turbulence model},
  Year		= {1994}
}

@Article{	  mohammadi2016review,
  Title		= {Review of numerical methods for simulation of the aortic
		  root: Present and future directions},
  Author	= {Mohammadi, Hossein and Cartier, Raymond and Mongrain,
		  Rosaire},
  Journal	= {International Journal for Computational Methods in
		  Engineering Science and Mechanics},
  Volume	= {17},
  Number	= {3},
  Pages		= {182--195},
  Year		= {2016},
  Publisher	= {Taylor \& Francis}
}

@Article{	  moireau-chapelle-11,
  Author	= {Moireau, P. and Chapelle, D.},
  Title		= {Reduced-order {Unscented Kalman Filtering} with
		  application to parameter identification in
		  large-dimensional systems},
  Journal	= {COCV},
  Pages		= {380--405},
  Volume	= {17},
  Note		= {doi:10.1051/cocv/2010006},
  Year		= 2011
}

###Article{	  moireau-chapelle-11,
  Author	= {Moireau, P. and Chapelle, D.},
  Title		= {Reduced-order {Unscented Kalman Filtering} with
		  application to parameter identification in
		  large-dimensional systems},
  Journal	= {COCV},
  Pages		= {380--405},
  Volume	= {17},
  Note		= {doi:10.1051/cocv/2010006},
  Year		= 2011
}

@Article{	  moireau-chapelle-11b,
  Author	= {Moireau, P. and Chapelle, D.},
  Title		= {Erratum of article ``Reduced-order {Unscented Kalman
		  Filtering} with application to parameter identification in
		  large-dimensional systems''},
  Journal	= {COCV},
  Pages		= {406--409},
  Volume	= {17},
  Note		= {doi:10.1051/cocv/2011001},
  Year		= 2011
}

###Article{	  moireau-chapelle-11b,
  Author	= {Moireau, P. and Chapelle, D.},
  Title		= {Erratum of article ``Reduced-order {Unscented Kalman
		  Filtering} with application to parameter identification in
		  large-dimensional systems''},
  Journal	= {COCV},
  Pages		= {406--409},
  Volume	= {17},
  Note		= {doi:10.1051/cocv/2011001},
  Year		= 2011
}

@Article{	  moireau-chapelle-letallec-08,
  Author	= {Moireau, P. and Chapelle, D. and Le Tallec, P.},
  Journal	= {Computer Methods in Applied Mechanics and Engineering},
  Pages		= {659--677},
  Title		= {Joint state and parameter estimation for distributed
		  mechanical systems},
  Volume	= 197,
  Year		= 2008
}

###Article{	  moireau-chapelle-letallec-08,
  Author	= {Moireau, P. and Chapelle, D. and Le Tallec, P.},
  Journal	= {Computer Methods in Applied Mechanics and Engineering},
  Pages		= {659--677},
  Title		= {Joint state and parameter estimation for distributed
		  mechanical systems},
  Volume	= 197,
  Year		= 2008
}

@Article{	  moireau-chapelle-letallec-09,
  Author	= {Moireau, P. and Chapelle, D. and Le Tallec, P.},
  date-added	= {2009-03-10 11:37:28 -0700},
  date-modified	= {2009-03-10 11:37:56 -0700},
  DOI		= {10.1088/0266-5611/25/3/035010},
  Journal	= {Inverse Problems},
  Month		= {March},
  Number	= {3},
  Pages		= {035010--035035},
  Title		= {Filtering for distributed mechanical systems using
		  position measurements: {P}erspective in medical imaging},
  Volume	= {25},
  Year		= {2009}
}

###Article{	  moireau-chapelle-letallec-09,
  Author	= {Moireau, P. and Chapelle, D. and Le Tallec, P.},
  date-added	= {2009-03-10 11:37:28 -0700},
  date-modified	= {2009-03-10 11:37:56 -0700},
  DOI		= {10.1088/0266-5611/25/3/035010},
  Journal	= {Inverse Problems},
  Month		= {March},
  Number	= {3},
  Pages		= {035010--035035},
  Title		= {Filtering for distributed mechanical systems using
		  position measurements: {P}erspective in medical imaging},
  Volume	= {25},
  Year		= {2009},
  bdsk-url-1	= {http://dx.doi.org/10.1088/0266-5611/25/3/035010}
}

@Article{	  moireau-etal-externaltissueestimation-11,
  Year		= {2012},
  ISSN		= {1617-7959},
  Journal	= {Biomechanics and Modeling in Mechanobiology},
  DOI		= {10.1007/s10237-012-0418-3},
  Title		= {Sequential identification of boundary support parameters
		  in a fluid-structure vascular model using patient image
		  data},
  Publisher	= {Springer-Verlag},
  Keywords	= {Nonlinear fluid-structure interaction; Patient-specific
		  hemodynamics; Image-based data assimilation; Parameter
		  identification; Support boundary conditions},
  Author	= {Moireau, P. and Bertoglio, C. and Xiao, N. and Figueroa,
		  C.A. and Taylor, C.A. and Chapelle, D. and Gerbeau, J.-F.},
  Pages		= {1-22}
}

###Article{	  moireau-etal-externaltissueestimation-11,
  Year		= {2012},
  ISSN		= {1617-7959},
  Journal	= {Biomechanics and Modeling in Mechanobiology},
  DOI		= {10.1007/s10237-012-0418-3},
  Title		= {Sequential identification of boundary support parameters
		  in a fluid-structure vascular model using patient image
		  data},
  Publisher	= {Springer-Verlag},
  Keywords	= {Nonlinear fluid-structure interaction; Patient-specific
		  hemodynamics; Image-based data assimilation; Parameter
		  identification; Support boundary conditions},
  Author	= {Moireau, P. and Bertoglio, C. and Xiao, N. and Figueroa,
		  C.A. and Taylor, C.A. and Chapelle, D. and Gerbeau, J.-F.},
  Pages		= {1-22}
}

@Article{	  moireau-etal-ident_extiss-12,
  Author	= {Moireau, P. and Bertoglio, C. and Xiao, N. and Figueroa,
		  C. and Taylor, C. and Chapelle, D. and Gerbeau, JF.},
  date-modified	= {2012-05-01 13:06:48 +0000},
  Journal	= {Biomechanics and Modeling in Mechanobiology},
  Title		= {Sequential identification of boundary support parameters
		  in a fluid-structure vascular model using patient image
		  data},
  Year		= {2013},
  Publisher	= {Springer Berlin / Heidelberg},
  ISSN		= {1617-7959},
  Volume	= {12},
  DOI		= {10.1007/s10237-012-0418-3},
  Pages		= {475-496}
}

@Article{	  moireau-xiao-gerbeau-11,
  Author	= {Moireau, P. and Xiao, N. and Astorino, M. and Figueroa,
		  C.A. and Chapelle, D. and Taylor, C.A. and Gerbeau, J-F.},
  Title		= {External tissue support and fluid-structure simulation in
		  blood flows},
  Journal	= {Biomechanics and Modeling in Mechanobiology},
  Year		= {2011},
  Note		= {doi: 10.1007/s10237-011-0289-z}
}

###Article{	  moireau-xiao-gerbeau-11,
  Author	= {Moireau, P. and Xiao, N. and Astorino, M. and Figueroa,
		  C.A. and Chapelle, D. and Taylor, C.A. and Gerbeau, J-F.},
  Title		= {External tissue support and fluid-structure simulation in
		  blood flows},
  Journal	= {Biomechanics and Modeling in Mechanobiology},
  Year		= {2011},
  Note		= {doi: 10.1007/s10237-011-0289-z}
}

@PhdThesis{	  moireau08,
  Author	= {Moireau, P.},
  School	= {Ecole Polytechnique},
  Title		= {Filtering based data assimilation for second order
		  hyperbolic PDE. Applications in cardiac mechanics},
  Year		= {2008}
}

###PhdThesis{	  moireau08,
  Author	= {Moireau, P.},
  School	= {Ecole Polytechnique},
  Title		= {Filtering based data assimilation for second order
		  hyperbolic PDE. Applications in cardiac mechanics},
  Year		= {2008}
}

@PhdThesis{	  moireau2008phd,
  Title		= {Filtering based data assimilation for second order
		  hyperbolic PDE. Applications in cardiac mechanics},
  Author	= {Moireau, Philippe},
  Year		= {2008},
  School	= {PhD thesis, Ecole Polytechnique}
}

@Article{	  moireau2009position,
  Title		= {Filtering for distributed mechanical systems using
		  position measurements: perspectives in medical imaging},
  Author	= {Moireau, Philippe and Chapelle, Dominique and Le Tallec,
		  Patrick},
  Journal	= {Inverse problems},
  Volume	= {25},
  Number	= {3},
  Pages		= {035010},
  Year		= {2009},
  Publisher	= {IOP Publishing}
}

@Article{	  moireau2011cocv,
  Title		= {Reduced-order Unscented Kalman Filtering with application
		  to parameter identification in large-dimensional systems},
  Author	= {Moireau, Philippe and Chapelle, Dominique},
  Journal	= {ESAIM: Control, Optimisation and Calculus of Variations},
  Volume	= {17},
  Number	= {02},
  Pages		= {380--405},
  Year		= {2011},
  Publisher	= {Cambridge Univ Press}
}

@Article{	  moireau2012bmmb,
  Title		= {Sequential identification of boundary support parameters
		  in a fluid-structure vascular model using patient image
		  data},
  Author	= {Moireau, P. and Bertoglio, C. and Xiao, N. and Figueroa,
		  C.A. and Taylor, C.A. and Chapelle, D. and Gerbeau, J.-F.},
  Journal	= {Biomechanics and Modeling in Mechanobiology},
  Year		= {2012},
  Pages		= {1-22},
  DOI		= {10.1007/s10237-012-0418-3},
  ISSN		= {1617-7959},
  Keywords	= {Nonlinear fluid-structure interaction; Patient-specific
		  hemodynamics; Image-based data assimilation; Parameter
		  identification; Support boundary conditions; FSI},
  Publisher	= {Springer-Verlag}
}

@Article{	  moireau2013exttissueestim,
  Author	= "Moireau, P. and Bertoglio, C. and Xiao, N. and Figueroa,
		  C. A. and Taylor, C. A. and Chapelle, D. and Gerbeau,
		  J.-F.",
  Title		= "Sequential identification of boundary support parameters
		  in a fluid-structure vascular model using patient image
		  data",
  Journal	= "Biomechanics and Modeling in Mechanobiology",
  Year		= "2013",
  Volume	= "12",
  Number	= "3",
  Pages		= "475--496",
  Abstract	= "Viscoelastic support has been previously established as a
		  valuable modeling ingredient to represent the effect of
		  surrounding tissues and organs in a fluid-structure
		  vascular model. In this paper, we propose a complete
		  methodological chain for the identification of the
		  corresponding boundary support parameters, using patient
		  image data. We consider distance maps of model to image
		  contours as the discrepancy driving the data assimilation
		  approach, which then relies on a combination of (1) state
		  estimation based on the so-called SDF filtering method,
		  designed within the realm of Luenberger observers and well
		  adapted to handling measurements provided by image
		  sequences, and (2) parameter estimation based on a
		  reduced-order UKF filtering method which has no need for
		  tangent operator computations and features natural
		  parallelism to a high degree. Implementation issues are
		  discussed, and we show that the resulting computational
		  effectiveness of the complete estimation chain is
		  comparable to that of a direct simulation. Furthermore, we
		  demonstrate the use of this framework in a realistic
		  application case involving hemodynamics in the thoracic
		  aorta. The estimation of the boundary support parameters
		  proves successful, in particular in that direct modeling
		  simulations based on the estimated parameters are more
		  accurate than with a previous manual expert calibration.
		  This paves the way for complete patient-specific
		  fluid-structure vascular modeling in which all types of
		  available measurements could be used to estimate additional
		  uncertain parameters of biophysical and clinical
		  relevance.",
  ISSN		= "1617-7940",
  DOI		= "10.1007/s10237-012-0418-3",
  URL		= "http://dx.doi.org/10.1007/s10237-012-0418-3"
}

@Article{	  moireau_external_2012,
  langid	= {english},
  Title		= {External Tissue Support and FluidâStructure Simulation
		  in Blood Flows},
  Volume	= {11},
  ISSN		= {1617-7959, 1617-7940},
  URL		= {http://link.springer.com/10.1007/s10237-011-0289-z},
  DOI		= {10.1007/s10237-011-0289-z},
  Number	= {1-2},
  JournalTitle	= {Biomechanics and Modeling in Mechanobiology},
  URLDate	= {2018-09-19},
  Date		= {2012-01},
  Pages		= {1-18},
  Author	= {Moireau, P. and Xiao, N. and Astorino, M. and Figueroa, C.
		  A. and Chapelle, D. and Taylor, C. A. and Gerbeau, J.-F.}
}

@Article{	  moireau_joint_2008,
  Title		= {Joint State and Parameter Estimation for Distributed
		  Mechanical Systems},
  Volume	= {197},
  URL		= {http://www.sciencedirect.com/science/article/pii/S0045782507003660},
  Number	= {6},
  JournalTitle	= {Computer methods in applied mechanics and engineering},
  URLDate	= {2016-08-31},
  Year		= {2008},
  Pages		= {659--677},
  Author	= {Moireau, Philippe and Chapelle, Dominique and Le Tallec,
		  Patrick}
}

@Article{	  moireau_reduced-order_2011,
  Title		= {Reduced-Order {{Unscented Kalman Filtering}} with
		  Application to Parameter Identification in
		  Large-Dimensional Systems},
  Volume	= {17},
  URL		= {http://www.esaim-cocv.org/articles/cocv/abs/2011/02/cocv0918/cocv0918.html},
  Number	= {2},
  JournalTitle	= {ESAIM: Control, Optimisation and Calculus of Variations},
  URLDate	= {2016-08-29},
  Date		= {2011},
  Pages		= {380--405},
  Author	= {Moireau, Philippe and Chapelle, Dominique}
}

@Article{	  moireau_sequential_2013,
  langid	= {english},
  Title		= {Sequential Identification of Boundary Support Parameters
		  in a Fluid-Structure Vascular Model Using Patient Image
		  Data},
  Volume	= {12},
  ISSN		= {1617-7959, 1617-7940},
  URL		= {http://link.springer.com/10.1007/s10237-012-0418-3},
  DOI		= {10.1007/s10237-012-0418-3},
  Number	= {3},
  JournalTitle	= {Biomechanics and Modeling in Mechanobiology},
  URLDate	= {2019-02-27},
  Year		= {2013-06},
  Pages		= {475-496},
  Author	= {Moireau, P. and Bertoglio, C. and Xiao, N. and Figueroa,
		  C. A. and Taylor, C. A. and Chapelle, D. and Gerbeau,
		  J.-F.}
}

@PhdThesis{	  moireauhdr,
  Title		= {{Observers for data assimilation - Applications to cardiac
		  modeling}},
  Author	= {Moireau, Philippe},
  URL		= {https://tel.archives-ouvertes.fr/tel-01404866},
  School	= {{Universit{\'e} Paris Saclay ; Universit{\'e} Paris Sud -
		  Paris XI}},
  Year		= {2016},
  Month		= nov,
  Keywords	= {inverse problems ; control ; observers ; PDE ; cardiac
		  mechanics ; probl{\`e}mes inverses ; estimation ;
		  identification ; data assimilation ; control observateurs ;
		  EDP ; m{\'e}canique cardiaque},
  Type		= {Habilitation {\`a} diriger des recherches},
  PDF		= {https://tel.archives-ouvertes.fr/tel-01404866/file/habilMoireau.pdf},
  hal_id	= {tel-01404866},
  hal_version	= {v1}
}

@InProceedings{	  mok-wall-01,
  Address	= {Barcelona},
  Author	= {Mok, D. P. and Wall, W. A. },
  BookTitle	= {Trends in computational structural mechanics},
  code		= {fsi3},
  Editor	= {W.A. Wall, K.U. Bletzinger, K. Schweizerhof},
  Publisher	= {CIMNE},
  Title		= {Partitioned analysis schemes for the transient interaction
		  of incompressible flows and nonlinear flexible structures},
  Year		= {2001}
}

###InProceedings{ mok-wall-01,
  Address	= {Barcelona},
  Author	= {Mok, D. P. and Wall, W. A. },
  BookTitle	= {Trends in computational structural mechanics},
  code		= {fsi3},
  Editor	= {W.A. Wall, K.U. Bletzinger, K. Schweizerhof},
  Publisher	= {CIMNE},
  Title		= {Partitioned analysis schemes for the transient interaction
		  of incompressible flows and nonlinear flexible structures},
  Year		= {2001}
}

@InProceedings{	  mok-wall-ramm-01,
  Author	= {Mok, D. P. and Wall, W. A. and Ramm, E. },
  BookTitle	= {Computational Fluid and Solid Mechanics},
  code		= {fsi4},
  Editor	= {K.J. Bathe},
  Pages		= {1325-1328},
  Publisher	= {Elsevier},
  Title		= {Accelerated iterative substructuring schemes for
		  instationary fluid-structure interaction},
  Year		= {2001}
}

###InProceedings{ mok-wall-ramm-01,
  Author	= {Mok, D. P. and Wall, W. A. and Ramm, E. },
  BookTitle	= {Computational Fluid and Solid Mechanics},
  code		= {fsi4},
  Editor	= {K.J. Bathe},
  Pages		= {1325-1328},
  Publisher	= {Elsevier},
  Title		= {Accelerated iterative substructuring schemes for
		  instationary fluid-structure interaction},
  Year		= {2001}
}

@Article{	  montalba_variability_2018,
  Title		= {Variability of {{4D}} Flow Parameters When Subjected to
		  Changes in {{MRI}} Acquisition Parameters Using a Realistic
		  Thoracic Aortic Phantom},
  Author	= {Montalba, Cristian and Urbina, Jesus and Sotelo, Julio and
		  Andia, Marcelo E. and Tejos, Cristian and Irarrazaval,
		  Pablo and Hurtado, Daniel E. and Valverde, Israel and
		  Uribe, Sergio},
  Year		= {2018},
  Volume	= {79},
  Pages		= {1882--1892},
  Journal	= {Magnetic resonance in medicine},
  Number	= {4}
}

@Article{	  moore_accuracy_1999,
  langid	= {english},
  Title		= {Accuracy of {{Computational Hemodynamics}} in {{Complex
		  Arterial Geometries Reconstructed}} from {{Magnetic
		  Resonance Imaging}}},
  Volume	= {27},
  ISSN		= {1573-9686},
  URL		= {https://doi.org/10.1114/1.163},
  DOI		= {10.1114/1.163},
  Abstract	= {Purpose: Combining computational blood flow modeling with
		  three-dimensional medical imaging provides a new approach
		  for studying links between hemodynamic factors and arterial
		  disease. Although this provides patient-specific
		  hemodynamic information, it is subject to several potential
		  errors. This study quantifies some of these errors and
		  identifies optimal reconstruction methodologies. Methods: A
		  carotid artery bifurcation phantom of known geometry was
		  imaged using a commercial magnetic resonance (MR) imager.
		  Three-dimensional models were reconstructed from the images
		  using several reconstruction techniques, and steady and
		  unsteady blood flow simulations were performed. The carotid
		  bifurcation from a healthy, human volunteer was then imaged
		  in vivo, and geometric models were reconstructed. Results:
		  Reconstructed models of the phantom showed good agreement
		  with the gold standard geometry, with a mean error of
		  approximately 15\% between the computed wall shear stress
		  fields. Reconstructed models of the in vivo carotid
		  bifurcation were unacceptably noisy, unless lumenal profile
		  smoothing and approximating surface splines were used.
		  Conclusions: All reconstruction methods gave acceptable
		  results for the phantom model, but in vivo models appear to
		  require smoothing. If proper attention is paid to smoothing
		  and geometric fidelity issues, models reconstructed from MR
		  images appear to be suitable for use in computational
		  studies of in vivo hemodynamics. Â© 1999 Biomedical
		  Engineering Society.PAC99: 8719Uv, 8761-c, 0705Pj, 8710+e},
  Number	= {1},
  JournalTitle	= {Annals of Biomedical Engineering},
  ShortJournal	= {Annals of Biomedical Engineering},
  URLDate	= {2019-02-25},
  Date		= {1999-01-01},
  Pages		= {32-41},
  Author	= {Moore, J. A. and Steinman, D. A. and Holdsworth, D. W. and
		  Ethier, C. R.}
}

###Article{	  moore_accuracy_1999,
  langid	= {english},
  Title		= {Accuracy of {{Computational Hemodynamics}} in {{Complex
		  Arterial Geometries Reconstructed}} from {{Magnetic
		  Resonance Imaging}}},
  Volume	= {27},
  ISSN		= {1573-9686},
  URL		= {https://doi.org/10.1114/1.163},
  DOI		= {10.1114/1.163},
  Abstract	= {Purpose: Combining computational blood flow modeling with
		  three-dimensional medical imaging provides a new approach
		  for studying links between hemodynamic factors and arterial
		  disease. Although this provides patient-specific
		  hemodynamic information, it is subject to several potential
		  errors. This study quantifies some of these errors and
		  identifies optimal reconstruction methodologies. Methods: A
		  carotid artery bifurcation phantom of known geometry was
		  imaged using a commercial magnetic resonance (MR) imager.
		  Three-dimensional models were reconstructed from the images
		  using several reconstruction techniques, and steady and
		  unsteady blood flow simulations were performed. The carotid
		  bifurcation from a healthy, human volunteer was then imaged
		  in vivo, and geometric models were reconstructed. Results:
		  Reconstructed models of the phantom showed good agreement
		  with the gold standard geometry, with a mean error of
		  approximately 15\% between the computed wall shear stress
		  fields. Reconstructed models of the in vivo carotid
		  bifurcation were unacceptably noisy, unless lumenal profile
		  smoothing and approximating surface splines were used.
		  Conclusions: All reconstruction methods gave acceptable
		  results for the phantom model, but in vivo models appear to
		  require smoothing. If proper attention is paid to smoothing
		  and geometric fidelity issues, models reconstructed from MR
		  images appear to be suitable for use in computational
		  studies of in vivo hemodynamics. Â© 1999 Biomedical
		  Engineering Society.PAC99: 8719Uv, 8761-c, 0705Pj, 8710+e},
  Number	= {1},
  JournalTitle	= {Annals of Biomedical Engineering},
  ShortJournal	= {Annals of Biomedical Engineering},
  URLDate	= {2019-02-25},
  Year		= {1999-01-01},
  Pages		= {32-41},
  Author	= {Moore, J. A. and Steinman, D. A. and Holdsworth, D. W. and
		  Ethier, C. R.}
}

@Article{	  moore_computational_1997,
  Title		= {Computational Blood Flow Modelling: Errors Associated with
		  Reconstructing Finite Element Models from Magnetic
		  Resonance Images},
  Volume	= {31},
  ShortTitle	= {Computational Blood Flow Modelling},
  Number	= {2},
  JournalTitle	= {Journal of Biomechanics},
  Date		= {1997},
  Pages		= {179--184},
  Author	= {Moore, Jennifer A. and Steinman, David A. and Ethier, C.
		  Ross}
}

###Article{	  moore_computational_1997,
  Title		= {Computational Blood Flow Modelling: Errors Associated with
		  Reconstructing Finite Element Models from Magnetic
		  Resonance Images},
  Volume	= {31},
  ShortTitle	= {Computational Blood Flow Modelling},
  Number	= {2},
  JournalTitle	= {Journal of Biomechanics},
  Year		= {1997},
  Pages		= {179--184},
  Author	= {Moore, Jennifer A. and Steinman, David A. and Ethier, C.
		  Ross}
}

@Article{	  moran_flow_1982,
  Title		= {A Flow Velocity Zeugmatographic Interlace for {{NMR}}
		  Imaging in Humans},
  Author	= {Moran, Paul R.},
  Year		= {1982},
  Volume	= {1},
  Pages		= {197--203},
  Journal	= {Magnetic resonance imaging},
  Number	= {4}
}

@Book{		  morand-ohayon-92,
  Address	= {Paris},
  Author	= {Morand, H. and Ohayon, R.},
  Publisher	= {Masson},
  Series	= {Recherches en Math{\'e}matiques Appliqu{\'e}es},
  Title		= {Interactions fluides-structures},
  Volume	= {23},
  Year		= {1992}
}

###Book{	  morand-ohayon-92,
  Address	= {Paris},
  Author	= {Morand, H. and Ohayon, R.},
  Publisher	= {Masson},
  Series	= {Recherches en Math{\'e}matiques Appliqu{\'e}es},
  Title		= {Interactions fluides-structures},
  Volume	= {23},
  Year		= {1992}
}

@Book{		  morand-ohayon-95,
  Author	= {Morand, H. and Ohayon, R.},
  Publisher	= {John Wiley \& Sons},
  Title		= {Fluid-Structure Interaction: Applied Numerical Methods},
  Year		= {1995}
}

###Book{	  morand-ohayon-95,
  Author	= {Morand, H. and Ohayon, R.},
  Publisher	= {John Wiley \& Sons},
  Title		= {Fluid-Structure Interaction: Applied Numerical Methods},
  Year		= {1995}
}

@Article{	  morbiducci_inflow_2013,
  Title		= {Inflow Boundary Conditions for Image-Based Computational
		  Hemodynamics: Impact of Idealized versus Measured Velocity
		  Profiles in the Human Aorta},
  Volume	= {46},
  ShortTitle	= {Inflow Boundary Conditions for Image-Based Computational
		  Hemodynamics},
  Number	= {1},
  JournalTitle	= {Journal of biomechanics},
  Year		= {2013},
  Pages		= {102--109},
  Author	= {Morbiducci, Umberto and Ponzini, Raffaele and Gallo, Diego
		  and Bignardi, Cristina and Rizzo, Giovanna}
}

@Article{	  morbiducci_outflow_2010,
  Title		= {Outflow {{Conditions}} for {{Image}}-{{Based Hemodynamic
		  Models}} of the {{Carotid Bifurcation}}: {{Implications}}
		  for {{Indicators}} of {{Abnormal Flow}}},
  Volume	= {132},
  ISSN		= {0148-0731},
  URL		= {http://dx.doi.org/10.1115/1.4001886},
  DOI		= {10.1115/1.4001886},
  ShortTitle	= {Outflow {{Conditions}} for {{Image}}-{{Based Hemodynamic
		  Models}} of the {{Carotid Bifurcation}}},
  Abstract	= {Computational fluid dynamics (CFD) models have become very
		  effective tools for predicting the flow field within the
		  carotid bifurcation, and for understanding the relationship
		  between local hemodynamics, and the initiation and
		  progression of vascular wall pathologies. As prescribing
		  proper boundary conditions can affect the solutions of the
		  equations governing blood flow, in this study, we
		  investigated the influence to assumptions regarding the
		  outflow boundary conditions in an image-based CFD model of
		  human carotid bifurcation. Four simulations were conducted
		  with identical geometry, inlet flow rate, and fluid
		  parameters. In the first case, a physiological time-varying
		  flow rate partition at branches along the cardiac cycle was
		  obtained by coupling the 3D model of the carotid
		  bifurcation at outlets with a lumped-parameter model of the
		  downstream vascular network. Results from the coupled model
		  were compared with those obtained by imposing three fixed
		  flow rate divisions (50/50, 60/40, and 70/30) between the
		  two branches of the isolated 3D model of the carotid
		  bifurcation. Three hemodynamic wall parameters were
		  considered as indicators of vascular wall dysfunction. Our
		  findings underscore that the overall effect of the
		  assumptions done in order to simulate blood flow within the
		  carotid bifurcation is mainly in the hot-spot modulation of
		  the hemodynamic descriptors of atherosusceptible areas,
		  rather than in their distribution. In particular, the more
		  physiological, time-varying flow rate division deriving
		  from the coupled simulation has the effect of damping wall
		  shear stress (WSS) oscillations (differences among the
		  coupled and the three fixed flow partition models are up to
		  37.3\% for the oscillating shear index). In conclusion, we
		  recommend to adopt more realistic constraints, for example,
		  by coupling models at different scales, as in this study,
		  when the objective is the outcome prediction of alternate
		  therapeutic interventions for individual patients, or to
		  test hypotheses related to the role of local fluid dynamics
		  and other biomechanical factors in vascular diseases.},
  Number	= {9},
  JournalTitle	= {Journal of Biomechanical Engineering},
  ShortJournal	= {J Biomech Eng},
  URLDate	= {2019-03-09},
  Year		= {2010-08-17},
  Pages		= {091005-091005-11},
  Author	= {Morbiducci, Umberto and Gallo, Diego and Massai, Diana and
		  Consolo, Filippo and Ponzini, Raffaele and Antiga, Luca and
		  Bignardi, Cristina and Deriu, Marco A. and Redaelli,
		  Alberto}
}

@Book{		  moreau-90,
  Annote	= {mhd, duct flow},
  Author	= {Moreau, R.},
  code		= {mhd17},
  Publisher	= {Kluwer Academic Publishers},
  Title		= {Magnetohydrodynamics},
  Year		= {1990}
}

###Book{	  moreau-90,
  Annote	= {mhd, duct flow},
  Author	= {Moreau, R.},
  code		= {mhd17},
  Publisher	= {Kluwer Academic Publishers},
  Title		= {Magnetohydrodynamics},
  Year		= {1990}
}

@InCollection{	  moreau-92,
  Author	= {Moreau, R.},
  BookTitle	= {Trait{\'e} de G{\'e}nie {\'e}lectrique},
  code		= {mhd39},
  Pages		= {D2950-3 -- D2950-30},
  Publisher	= {Editions Techniques de l'ing{\'e}nieur},
  Title		= {Ecoulement d'un m{\'e}tal liquide en pr{\'e}sence d'un
		  champ magn{\'e}tique},
  Volume	= {D4},
  Year		= {1992}
}

###InCollection{  moreau-92,
  Author	= {Moreau, R.},
  BookTitle	= {Trait{\'e} de G{\'e}nie {\'e}lectrique},
  code		= {mhd39},
  Pages		= {D2950-3 -- D2950-30},
  Publisher	= {Editions Techniques de l'ing{\'e}nieur},
  Title		= {Ecoulement d'un m{\'e}tal liquide en pr{\'e}sence d'un
		  champ magn{\'e}tique},
  Volume	= {D4},
  Year		= {1992}
}

@Article{	  moreau-evans-84,
  Author	= {Moreau, R. and Evans, J.W.},
  Journal	= {J. Electrochem. Soc.: Electrochem. Sci. Tech.},
  Number	= {10},
  Pages		= {2251-2259},
  Title		= {An analysis of the hydrodynamics of aluminium in reduction
		  cells},
  Volume	= {131},
  Year		= {1984}
}

###Article{	  moreau-evans-84,
  Author	= {Moreau, R. and Evans, J.W.},
  Journal	= {J. Electrochem. Soc.: Electrochem. Sci. Tech.},
  Number	= {10},
  Pages		= {2251-2259},
  Title		= {An analysis of the hydrodynamics of aluminium in reduction
		  cells},
  Volume	= {131},
  Year		= {1984}
}

@Article{	  moreau-ziegler-88,
  Author	= {Moreau, R. and Ziegler, D.},
  Journal	= {Metal. Trans. B.},
  Pages		= {737--744},
  Title		= {The Moreau-Evans hydrodynamic model applied to actual
		  Hall-H{\'e}roult cells},
  Volume	= {19B},
  Year		= {1988}
}

###Article{	  moreau-ziegler-88,
  Author	= {Moreau, R. and Ziegler, D.},
  Journal	= {Metal. Trans. B.},
  Pages		= {737--744},
  Title		= {The Moreau-Evans hydrodynamic model applied to actual
		  Hall-H{\'e}roult cells},
  Volume	= {19B},
  Year		= {1988}
}

@Article{	  morganti2013aorticrootfrom2d,
  Title		= {Aortic root 3D parametric morphological model from 2D-echo
		  images},
  Author	= {Morganti, S. and Valentini, A. and Favalli, V. and Serio,
		  A. and Gambarin, F. and Vella, D. and Mazzocchi, L. and
		  Massetti, M. and Auricchio, F. and Arbustini, E.},
  Journal	= {Computers in biology and medicine},
  Volume	= {43},
  Number	= {12},
  Pages		= {2196--2204},
  Year		= {2013},
  Publisher	= {Elsevier}
}

@Article{	  mortchelewicz_flutter_2000,
  langid	= {english},
  Title		= {Flutter Simulations},
  Volume	= {4},
  ISSN		= {12709638},
  URL		= {https://linkinghub.elsevier.com/retrieve/pii/S1270963800001164},
  DOI		= {10.1016/S1270-9638(00)00116-4},
  Number	= {1},
  JournalTitle	= {Aerospace Science and Technology},
  URLDate	= {2019-08-24},
  Date		= {2000-01},
  Pages		= {33-40},
  Author	= {MortchÃ©lÃ©wicz, Guy Daniel}
}

@PhdThesis{	  mouro-96,
  Author	= {Mouro, J.},
  School	= {Ecole Polytechnique, France},
  Title		= {Interactions fluide structure en grands d{\'e}placements.
		  R{\'e}solution num{\'e}rique et application aux composants
		  hydrauliques automobiles},
  Year		= {1996}
}

###PhdThesis{	  mouro-96,
  Author	= {Mouro, J.},
  School	= {Ecole Polytechnique, France},
  Title		= {Interactions fluide structure en grands d{\'e}placements.
		  R{\'e}solution num{\'e}rique et application aux composants
		  hydrauliques automobiles},
  Year		= {1996}
}

@Book{		  mpi,
  Author	= {Gropp, W. and Huss-Lederman, S. and Lumsdaine, A. and
		  Lusk, E. and Nitzberg, B. and Saphir, W. and Snir, M.},
  Edition	= {Second},
  Publisher	= {The MIT Press},
  Title		= {MPI: The Complete Reference (Vol. 2), Vol. 2 - The MPI-2
		  Extensions},
  Year		= {1998}
}

###Book{	  mpi,
  Author	= {Gropp, W. and Huss-Lederman, S. and Lumsdaine, A. and
		  Lusk, E. and Nitzberg, B. and Saphir, W. and Snir, M.},
  Edition	= {Second},
  Publisher	= {The MIT Press},
  Title		= {MPI: The Complete Reference (Vol. 2), Vol. 2 - The MPI-2
		  Extensions},
  Year		= {1998}
}

@Article{	  muhler_evaluation_1993,
  Title		= {Evaluation of Aortic Coarctation after Surgical Repair:
		  Role of Magnetic Resonance Imaging and {{Doppler}}
		  Ultrasound.},
  Volume	= {70},
  ShortTitle	= {Evaluation of Aortic Coarctation after Surgical Repair},
  Number	= {3},
  JournalTitle	= {Heart},
  Year		= {1993},
  Pages		= {285--290},
  Author	= {MÃ¼hler, E. G. and Neuerburg, Jorg M. and RÃ¼ben, A. and
		  Grabitz, Ralf G. and GÃ¼nther, R. W. and Messmer, Bruno J.
		  and von Bernuth, Gotz},
  Options	= {useprefix=true}
}

@Article{	  muller_reduced-order_2018,
  Title		= {Reduced-{{Order Unscented Kalman Filter}} with
		  Observations in the {{Frequency Domain}}: {{Application}}
		  to {{Computational Hemodynamics}}},
  ShortTitle	= {Reduced-{{Order Unscented Kalman Filter}} with
		  Observations in the {{Frequency Domain}}},
  JournalTitle	= {IEEE Transactions on Biomedical Engineering},
  Year		= {2018},
  Author	= {M\"uller, Lucas O. and Caiazzo, Alfonso and Blanco, Pablo
		  J.}
}

@InProceedings{	  munoz2010analysis,
  Title		= {Analysis of the helix and transverse angles of the muscle
		  fibers in the myocardium based on diffusion tensor
		  imaging},
  Author	= {Mu\~noz, Emma and C{\'a}rdenes, Rub{\'e}n and Frangi,
		  Alejandro F},
  BookTitle	= {Engineering in Medicine and Biology Society (EMBC), 2010
		  Annual International Conference of the IEEE},
  Pages		= {5720--5723},
  Year		= {2010},
  Organization	= {IEEE}
}

@Article{	  murata-secomb-88,
  Annote	= {red blood cell},
  Author	= {Murata, T. and Secomb, T.W.},
  code		= {cel19},
  Journal	= {Biorheology},
  Pages		= {113--122},
  Title		= {Effects of shear rate on rouleau formation in simple shear
		  flow},
  Volume	= {25},
  Year		= {1988}
}

###Article{	  murata-secomb-88,
  Annote	= {red blood cell},
  Author	= {Murata, T. and Secomb, T.W.},
  code		= {cel19},
  Journal	= {Biorheology},
  Pages		= {113--122},
  Title		= {Effects of shear rate on rouleau formation in simple shear
		  flow},
  Volume	= {25},
  Year		= {1988}
}

@Book{		  murphy2012machine,
  Title		= {Machine learning: a probabilistic perspective},
  Author	= {Murphy, Kevin P},
  Year		= {2012},
  Publisher	= {MIT press}
}

@Article{	  nacif2012jcmr,
  Title		= {Gadolinium-enhanced cardiovascular magnetic resonance:
		  administered dose in relationship to united states food and
		  drug administration (FDA) guidelines},
  Author	= {Nacif, Marcelo S. and Arai, Andrew E. and Lima, Joao A.C.
		  and Bluemke, David A.},
  Journal	= {Journal of Cardiovascular Magnetic Resonance},
  Year		= {2012},
  Number	= {18},
  Volume	= {14},
  File		= {:Nacif2012JCMR.pdf:PDF},
  Keywords	= {Contrast media, Gadolinium, Heart, Magnetic resonance
		  imaging},
  review	= {Nacif et al. Journal of Cardiovascular Magnetic Resonance
		  2012, 14:18 http://www.jcmr-online.com/content/14/1/18
		  
		  RESEARCH Open Access
		  
		  Gadolinium-enhanced cardiovascular magnetic resonance:
		  administered dose in relationship to united states food and
		  drug administration (FDA) guidelines Marcelo S Nacif1,2,3,
		  Andrew E Arai4, Joao AC Lima2 and David A Bluemke1,5*
		  
		  Abstract
		  
		  Purpose: Myocardial late gadolinium enhancement was
		  originally validated using higher than label-recommended
		  doses of gadolinium chelate. The objective of this study
		  was to evaluate available evidence for various gadolinium
		  dosing regimens used for CMR. The relationship of
		  gadolinium dose warnings (due to nephrogenic systemic
		  fibrosis) announced in 2008 to gadolinium dosing regimens
		  was also examined.
		  
		  Methods: We conducted a meta-analysis of peer reviewed
		  publications from January, 2004 to December, 2010. Major
		  subject search headings (MeSh) terms from the National
		  Library of Medicine?s PubMed were: contrast media,
		  gadolinium, heart, magnetic resonance imaging; searches
		  were limited to human studies with abstracts published in
		  English. Case reports, review articles, editorials, MRA
		  related papers and all reports that did not indicate
		  gadolinium type or weight-based dose were excluded. For all
		  included references, full text was available to determine
		  the total administered gadolinium dose on a per kg basis.
		  Average and median dose values were weighted by the number
		  of subjects in each study.
		  
		  Results: 399 publications were identified in PubMed; 233
		  studies matched the inclusion criteria, encompassing 19,934
		  patients with mean age 54.2 Â± 11.4 (range 9.3 to 76
		  years). 34 trials were related to perfusion testing and 199
		  to myocardial late gadolinium enhancement. In 2004, the
		  weighted-median and weighted-mean contrast dose were 0.15
		  and 0.16 Â± 0.06 mmol/kg, respectively. Median contrast
		  doses for 2005-2010 were: 0.2 mmol/kg for all years,
		  respectively. Mean contrast doses for the years 2005-2010
		  were: 0.19 Â± 0.03, 0.18 Â± 0.04, 0.18 Â± 0.10, 0.18 Â±
		  0.03, 0.18 Â± 0.04 and 0.18 Â± 0.04 mmol/kg, respectively
		  (p for trend, NS). Gadopentetate dimeglumine was the most
		  frequent gadolinium type [114 (48.9%) studies]. No change
		  in mean gadolinium dose was present before, versus after
		  the Food and Drug Administration (FDA) black box warning (p
		  > 0.05). Three multi-center dose ranging trials have been
		  published for cardiac {MRI} applications.
		  
		  Conclusion: CMR studies in the peer-reviewed published
		  literature routinely use higher gadolinium doses than
		  regulatory agencies indicated in the package leaflet.
		  Clinical trials should be supported to determine the
		  appropriate doses of gadolinium for CMR studies.
		  
		  Keywords: Contrast media, Gadolinium, Heart, Magnetic
		  resonance imaging
		  
		  * Correspondence: bluemked@nih.gov 1Radiology and Imaging
		  Sciences - National Institutes of Health Clinical Center,
		  Bethesda, MD, USA Full list of author information is
		  available at the end of the article
		  
		  Â© 2012 Nacif et al; licensee BioMed Central Ltd. This is
		  an Open Access article distributed under the terms of the
		  Creative Commons Attribution License
		  (http://creativecommons.org/licenses/by/2.0), which permits
		  unrestricted use, distribution, and reproduction in any
		  medium, provided the original work is properly cited.},
  URL		= {http://www.jcmr-online.com/content/14/1/18}
}

@Article{	  nagler-bertoglio-gee-wall-13,
  Author	= {Nagler, A. and Bertoglio, C. and Gee, M. and Wall, W.},
  Title		= {{Personalization of cardiac fiber orientations from image
		  data using the Unscented Kalman Filter}},
  Year		= {2013},
  Pages		= {132--140},
  Journal	= {LNCS 7945, 7th Int. Conference for Functional Imaging and
		  Modeling of the Heart}
}

@InBook{	  nagler2013,
  Author	= "Nagler, Andreas and Bertoglio, Crist{\'o}bal and Gee,
		  Michael and Wall, Wolfgang",
  Chapter	= "Personalization of Cardiac Fiber Orientations from Image
		  Data Using the Unscented Kalman Filter",
  Title		= "Functional Imaging and Modeling of the Heart: 7th
		  International Conference, FIMH 2013, London, UK, June
		  20-22, 2013. Proceedings",
  Year		= "2013",
  Publisher	= "Springer Berlin Heidelberg",
  Address	= "Berlin, Heidelberg",
  Pages		= "132--140",
  ISBN		= "978-3-642-38899-6",
  DOI		= "10.1007/978-3-642-38899-6_16",
  URL		= "http://dx.doi.org/10.1007/978-3-642-38899-6_16"
}

@Article{	  nasiraei-moghaddam_factors_2004,
  Title		= {Factors Affecting the Accuracy of Pressure Measurements in
		  Vascular Stenoses from Phase-Contrast {{MRI}}},
  Volume	= {52},
  Number	= {2},
  JournalTitle	= {Magnetic Resonance in Medicine: An Official Journal of the
		  International Society for Magnetic Resonance in Medicine},
  Year		= {2004},
  Pages		= {300--309},
  Author	= {Nasiraei-Moghaddam, Abbas and Behrens, Geoffrey and
		  Fatouraee, Nasser and Agarwal, Ramesh and Choi, Eric T. and
		  Amini, Amir A.}
}

@InCollection{	  natalini-99,
  Author	= {Natalini, R.},
  BookTitle	= {Analysis of systems of conservation laws},
  Editor	= {Chapman $\&$ Hall/CRC},
  Pages		= {128--198},
  Publisher	= { Boca Raton, FL},
  Title		= {Recent results on hyperbolic relaxation problems },
  Year		= {1999}
}

###InCollection{  natalini-99,
  Author	= {Natalini, R.},
  BookTitle	= {Analysis of systems of conservation laws},
  Editor	= {Chapman $\&$ Hall/CRC},
  Pages		= {128--198},
  Publisher	= { Boca Raton, FL},
  Title		= {Recent results on hyperbolic relaxation problems },
  Year		= {1999}
}

@Book{		  netter-atlas-00,
  Title		= {{Atlas of Human Anatomy}},
  Author	= {Netter, F.H.},
  Year		= {2000},
  Publisher	= {Saunders},
  Edition	= {10th}
}

###Book{	  netter-atlas-00,
  Title		= {{Atlas of Human Anatomy}},
  Author	= {Netter, F.H.},
  Year		= {2000},
  Publisher	= {Saunders},
  Edition	= {10th}
}

@Article{	  nguyen-68,
  Annote	= {mhd, stability},
  Author	= {Nguyen, X.},
  code		= {mhd28},
  Journal	= {C.R. Acad. Sc. Paris},
  Title		= {Etude th{\'e}orique et exp{\'e}rimentale sur mod{\`e}le
		  hydraulique des instabilit{\'e}s de {Rayleigh-Taylor} en
		  magn{\'e}tohydrodynamique},
  Volume	= {266},
  Year		= {1968}
}

###Article{	  nguyen-68,
  Annote	= {mhd, stability},
  Author	= {Nguyen, X.},
  code		= {mhd28},
  Journal	= {C.R. Acad. Sc. Paris},
  Title		= {Etude th{\'e}orique et exp{\'e}rimentale sur mod{\`e}le
		  hydraulique des instabilit{\'e}s de {Rayleigh-Taylor} en
		  magn{\'e}tohydrodynamique},
  Volume	= {266},
  Year		= {1968}
}

@Article{	  nguyen2009adaptive,
  Title		= {Adaptive anisotropic meshing for steady
		  convection-dominated problems},
  Author	= {Nguyen, Hoa and Gunzburger, Max and Ju, Lili and Burkardt,
		  John},
  Journal	= {Computer Methods in Applied Mechanics and Engineering},
  Volume	= {198},
  Number	= {37},
  Pages		= {2964--2981},
  Year		= {2009},
  Publisher	= {Elsevier}
}

@Article{	  nguyen2013,
  Title		= {{In vivo three-dimensional high resolution cardiac
		  diffusion-weighted MRI: A motion compensated
		  diffusion-prepared balanced steady-state free precession
		  approach}},
  Author	= {Nguyen, C. and Fan, Z. and Sharif, B. and He, Y. and
		  Dharmakumar, R. and Berman, D. S. and Li, D.},
  Journal	= {Magnetic Resonance in Medicine},
  Volume	= {72},
  Number	= {5},
  Pages		= {1257--1267},
  Year		= {2013},
  Publisher	= {Wiley Online Library}
}

@Article{	  nguyen2014jcmr,
  Title		= {In vivo contrast free chronic myocardial infarction
		  characterization using diffusion-weighted cardiovascular
		  magnetic resonance.},
  Author	= {Nguyen, Christopher and Fan, Zhaoyang and Xie, Yibin and
		  Dawkins, James and Tseliou, Eleni and Bi, Xiaoming and
		  Sharif, Behzad and Dharmakumar, Rohan and Marb{\'{a}}n,
		  Eduardo and Li, Debiao},
  Journal	= {J Cardiovasc Magn Reson},
  Year		= {2014},
  Pages		= {68},
  Volume	= {16},
  Abstract	= {Despite the established role of late gadolinium
		  enhancement (LGE) cardiovascular magnetic resonance (CMR)
		  in characterizing chronic myocardial infarction (MI), a
		  significant portion of chronic MI patients are
		  contraindicative for the use of contrast agents. One
		  promising alternative contrast free technique is diffusion
		  weighted CMR (dwCMR), which has been shown ex vivo to be
		  sensitive to myocardial fibrosis. We used a recently
		  developed in vivo dwCMR in chronic MI pigs to compare
		  apparent diffusion coefficient (ADC) maps with LGE imaging
		  for infarct characterization.In eleven mini pigs, chronic
		  MI was induced by complete occlusion of the left anterior
		  descending artery for 150Â minutes. LGE, cine, and dwCMR
		  imaging was performed 8Â weeks post MI. ADC maps were
		  derived from three orthogonal diffusion directions
		  (b?=?400Â s/mm2) and one non-diffusion weighted image. Two
		  semi-automatic infarct classification methods, threshold
		  and full width half max (FWHM), were performed in both LGE
		  and ADC maps. Regional wall motion (RWM) analysis was
		  performed and compared to ADC maps to determine if any
		  observed ADC change was significantly influenced by bulk
		  motion.ADC of chronic MI territories was significantly
		  increased (threshold: 2.4?Â±?0.3Â ?m2/ms, FWHM:
		  2.4?Â±?0.2Â ?m2/ms) compared to remote myocardium
		  (1.4?Â±?0.3Â ?m2/ms). RWM was significantly reduced
		  (threshold: 1.0?Â±?0.4Â mm, FWHM: 0.9?Â±?0.4Â mm) in
		  infarcted regions delineated by ADC compared to remote
		  myocardium (8.3?Â±?0.1Â mm). ADC-derived infarct volume and
		  location had excellent agreement with LGE. Both LGE and ADC
		  were in complete agreement when identifying transmural
		  infarcts. Additionally, ADC was able to detect
		  LGE-delineated infarcted segments with high sensitivity,
		  specificity, PPV, and NPV. (threshold: 0.88, 0.93, 0.87,
		  and 0.94, FWHM: 0.98, 0.97, 0.93, and 0.99,
		  respectively).In vivo diffusion weighted CMR has potential
		  as a contrast free alternative for LGE in characterizing
		  chronic MI.},
  DOI		= {10.1186/s12968-014-0068-y},
  Language	= {eng},
  medline-pst	= {epublish},
  owner		= {stoeckc},
  pii		= {s12968-014-0068-y},
  pmid		= {25230598},
  timestamp	= {2015.07.24},
  URL		= {http://dx.doi.org/10.1186/s12968-014-0068-y}
}

@Article{	  nguyen2014mrm,
  Title		= {In vivo three-dimensional high resolution cardiac
		  diffusion-weighted MRI: a motion compensated
		  diffusion-prepared balanced steady-state free precession
		  approach.},
  Author	= {Nguyen, Christopher and Fan, Zhaoyang and Sharif, Behzad
		  and He, Yi and Dharmakumar, Rohan and Berman, Daniel S. and
		  Li, Debiao},
  Journal	= {Magn Reson Med},
  Year		= {2014},
  Month		= {Nov},
  Number	= {5},
  Pages		= {1257--1267},
  Volume	= {72},
  Abstract	= {The aim of this study was to implement and optimize a
		  novel application of diffusion-prepared balanced
		  steady-state free precession (bSSFP) to perform in vivo
		  cardiac diffusion-weighted MRI.Diffusion-prepared sequences
		  have the flexibility to diffusion encode with a multi-shot
		  image readout. The diffusion preparation was optimized to
		  reduce sensitivity to cardiac bulk motion with second order
		  motion compensation (M1M2). The image readout consisted of
		  a three-dimensional (3D) centric-encoded segmented bSSFP
		  acquisition that incorporated a prospective navigator. Ten
		  healthy subjects were scanned twice using the proposed
		  technique diffusion preparation with and without M1M2 using
		  three orthogonal directions under varying off-resonance
		  conditions. Trace apparent diffusion coefficient (trADC)
		  maps and the left ventricular (LV) trADC were
		  calculated.M1M2 diffusion-prepared scans resulted in LV
		  trADC values of 1.5 Â± 0.4 Ã 10(-3) mm(2)/s that were
		  reproducible yielding no statistical differences (P =
		  0.54). M1M2 diffusion-prepared images showed no ghosting
		  artifacts and/or signal fallout. The non-motion-compensated
		  diffusion-prepared scans yielded LV trADC values of 6.6 Â±
		  0.9 Ã 10(-3) mm(2)/s and diffusion-prepared images with
		  severe bulk motion-induced artifacts.We developed a novel
		  free-breathing bulk motion compensated diffusion-prepared
		  3D segmented bSSFP technique able to perform in vivo
		  cardiac diffusion-weighted MRI on a conventional clinical
		  MR scanner.},
  DOI		= {10.1002/mrm.25038},
  Institution	= {Biomedical Imaging Research Institute, Cedars-Sinai
		  Medical Center, Los Angeles, California, USA; Department of
		  Bioengineering, University of California Los Angeles, Los
		  Angeles, California, USA.},
  Language	= {eng},
  medline-pst	= {ppublish},
  owner		= {stoeckc},
  pmid		= {24259113},
  timestamp	= {2015.07.24},
  URL		= {http://dx.doi.org/10.1002/mrm.25038}
}

@Book{		  nichols-orourke-05,
  Title		= {McDonald's blood flow in arteries: theoretical,
		  experimental and clinical principles},
  Author	= {Nichols, W.W. and O'Rourke, M.F. and Hartley, C.},
  Volume	= {340809418},
  Year		= {2005},
  Publisher	= {Hodder Arnold London}
}

###Book{	  nichols-orourke-05,
  Title		= {McDonald's blood flow in arteries: theoretical,
		  experimental and clinical principles},
  Author	= {Nichols, W.W. and O'Rourke, M.F. and Hartley, C.},
  Volume	= {340809418},
  Year		= {2005},
  Publisher	= {Hodder Arnold London}
}

@Book{		  nichols_mcdonalds_2011,
  langid	= {english},
  Location	= {{London}},
  Title		= {{{McDonald}}'s {{Blood Flow}} in {{Arteries}}, {{Sixth
		  Edition}}: {{Theoretical}}, {{Experimental}} and {{Clinical
		  Principles}}.},
  ISBN		= {978-1-4441-2878-9},
  URL		= {http://public.eblib.com/choice/publicfullrecord.aspx?p=956467},
  ShortTitle	= {{{McDonald}}'s {{Blood Flow}} in {{Arteries}}, {{Sixth
		  Edition}}},
  Abstract	= {ForewordMichael TaylorForewordDavid A. Kass and Myron L.
		  WeisfeldtPrefaceList of AbbreviationsIntroductionThe nature
		  of flow of a liquidProperties of the arterial wall:
		  theoryProperties of the arterial wall: practiceEndothelial
		  functionGeneral principles for measuring arterial
		  wavesPulsatile pressure-flow relationsUltrasoundWave
		  reflectionsContours of pressure and flow waves in
		  arteriesPrinciples of recording and analysis of arterial
		  waveformsVascular impedanceAortic input impedance as
		  ventricular loadCoupling of the left ventricle with the
		  systemic circulation: implications to cardiac
		  failureCardiac failure: clinical implicationsThe pulmonary
		  circulationThe coronary circulationSpecial
		  circulationsAgingHypertensionInterpretation of blood
		  pressure in epidemiological studies and clinical
		  trialsArterial biomarkersAtherosclerosisSpecific arterial
		  diseaseGeneralized and metabolic diseaseTherapeutic
		  strategiesExerciseCentral arterial pressureLifestyle and
		  environmentPressure pulse waveform analysisBibliography.},
  Publisher	= {{CRC Press}},
  URLDate	= {2019-02-06},
  Year		= {2011},
  Author	= {Nichols, Wilmer and O'Rourke, Michael and Vlachopoulos,
		  Charalambos},
  Note		= {OCLC: 1027501178}
}

@Article{	  niederer2006quantitative,
  Title		= {A quantitative analysis of cardiac myocyte relaxation: a
		  simulation study},
  Author	= {Niederer, SA and Hunter, PJ and Smith, NP},
  Journal	= {Biophysical journal},
  Volume	= {90},
  Number	= {5},
  Pages		= {1697--1722},
  Year		= {2006},
  Publisher	= {Elsevier}
}

@Article{	  niederer_analyses_2012,
  Title		= {Analyses of the Redistribution of Work following Cardiac
		  Resynchronisation Therapy in a Patient Specific Model},
  Author	= {Niederer, S.A. and Lamata, P. and Plank, G. and
		  Chinchapatnam, P. and Ginks, M. and Rhode, K. and Rinaldi,
		  C.A. and Razavi, R. and Smith, N.P.},
  Journal	= {{PLoS} {ONE}},
  Year		= {2012},
  Month		= aug,
  Number	= {8},
  Pages		= {e43504},
  Volume	= {7},
  DOI		= {10.1371/journal.pone.0043504},
  Editor	= {Bauer, Wolfgang Rudolf},
  File		= {Niederer_2012.pdf:/home/hoermann/.zotero/zotero/krpbc0h6.default/zotero/storage/8THVZ4MD/Niederer_2012.pdf:application/pdf},
  ISSN		= {1932-6203},
  Language	= {en},
  URL		= {http://dx.plos.org/10.1371/journal.pone.0043504},
  URLDate	= {2014-11-28}
}

@Article{	  niederer_biophysical_2012,
  Title		= {Biophysical Modeling to Simulate the Response to Multisite
		  Left Ventricular Stimulation Using a Quadripolar Pacing
		  Lead},
  Author	= {Niederer, S.A. and Shetty, A.K. and Plank, G. and Bostock,
		  J. and Razavi, R. and Smith, N.P. and Rinaldi, C.A.},
  Journal	= {Pacing and Clinical Electrophysiology},
  Year		= {2012},
  Month		= feb,
  Number	= {2},
  Pages		= {204--214},
  Volume	= {35},
  DOI		= {10.1111/j.1540-8159.2011.03243.x},
  File		= {Niederer2012.pdf:/home/hoermann/.zotero/zotero/krpbc0h6.default/zotero/storage/XC4X2ZT5/Niederer2012.pdf:application/pdf},
  ISSN		= {01478389},
  Language	= {en},
  ShortTitle	= {Biophysical Modeling to Simulate the Response to Multisite
		  Left Ventricular Stimulation Using a Quadripolar Pacing
		  Lead},
  URL		= {http://doi.wiley.com/10.1111/j.1540-8159.2011.03243.x},
  URLDate	= {2014-11-28}
}

@Article{	  niederer_length-dependent_2011,
  Title		= {Length-dependent tension in the failing heart and the
		  efficacy of cardiac resynchronization therapy},
  Author	= {Niederer, S. A. and Plank, G. and Chinchapatnam, P. and
		  Ginks, M. and Lamata, P. and Rhode, K.S. and Rinaldi, C.A.
		  and Razavi, R. and Smith, N.P.},
  Journal	= {Cardiovascular Research},
  Year		= {2011},
  Month		= feb,
  Number	= {2},
  Pages		= {336--343},
  Volume	= {89},
  DOI		= {10.1093/cvr/cvq318},
  File		= {Niederer2011.pdf:/home/hoermann/.zotero/zotero/krpbc0h6.default/zotero/storage/5MQG73PM/Niederer2011.pdf:application/pdf},
  ISSN		= {0008-6363},
  Language	= {en},
  URL		= {http://cardiovascres.oxfordjournals.org/cgi/doi/10.1093/cvr/cvq318},
  URLDate	= {2014-11-27}
}

@Article{	  nielles-vallespin2013mrm,
  Title		= {In vivo diffusion tensor MRI of the human heart:
		  reproducibility of breath-hold and navigator-based
		  approaches.},
  Author	= {Nielles-Vallespin, Sonia and Mekkaoui, Choukri and
		  Gatehouse, Peter and Reese, Timothy G. and Keegan, Jennifer
		  and Ferreira, Pedro F. and Collins, Steve and Speier, Peter
		  and Feiweier, Thorsten and {de Silva}, Ranil and Jackowski,
		  Marcel P. and Pennell, Dudley J. and Sosnovik, David E. and
		  Firmin, David},
  Journal	= {Magn Reson Med},
  Year		= {2013},
  Month		= {Aug},
  Number	= {2},
  Pages		= {454--465},
  Volume	= {70},
  Abstract	= {The aim of this study was to implement a quantitative in
		  vivo cardiac diffusion tensor imaging (DTI) technique that
		  was robust, reproducible, and feasible to perform in
		  patients with cardiovascular disease. A stimulated-echo
		  single-shot echo-planar imaging (EPI) sequence with zonal
		  excitation and parallel imaging was implemented, together
		  with a novel modification of the prospective navigator
		  (NAV) technique combined with a biofeedback mechanism. Ten
		  volunteers were scanned on two different days, each time
		  with both multiple breath-hold (MBH) and NAV multislice
		  protocols. Fractional anisotropy (FA), mean diffusivity
		  (MD), and helix angle (HA) fiber maps were created.
		  Comparison of initial and repeat scans showed good
		  reproducibility for both MBH and NAV techniques for FA (P >
		  0.22), MD (P > 0.15), and HA (P > 0.28). Comparison of MBH
		  and NAV FA (FAMBHday1 = 0.60 Â± 0.04, FANAVday1 = 0.60 Â±
		  0.03, P = 0.57) and MD (MDMBHday1 = 0.8 Â± 0.2 Ã 10(-3)
		  mm(2) /s, MDNAVday1 = 0.9 Â± 0.2 Ã 10( -3) mm(2) /s, P =
		  0.07) values showed no significant differences, while HA
		  values (HAMBHday1Endo = 22 Â± 10Â°, HAMBHday1Mid-Endo = 20
		  Â± 6Â°, HAMBHday1Mid-Epi = -1 Â± 6Â°, HAMBHday1Epi = -17 Â±
		  6Â°, HANAVday1Endo = 7 Â± 7Â°, HANAVday1Mid-Endo = 13 Â±
		  8Â°, HANAVday1Mid-Epi = -2 Â± 7Â°, HANAVday1Epi = -14 Â±
		  6Â°) were significantly different. The scan duration was
		  20\% longer with the NAV approach. Currently, the MBH
		  approach is the more robust in normal volunteers. While the
		  NAV technique still requires resolution of some bulk motion
		  sensitivity issues, these preliminary experiments show its
		  potential for in vivo clinical cardiac diffusion tensor
		  imaging and for delivering high-resolution in vivo 3D DTI
		  tractography of the heart.},
  DOI		= {10.1002/mrm.24488},
  Institution	= {Cardiovascular MR Unit, Royal Brompton And Harefield NHS
		  Foundation Trust, London, UK.
		  s.nielles-vallespin@rbht.nhs.uk},
  Keywords	= {Biofeedback, Psychology, methods; Breath Holding;
		  Cardiac-Gated Imaging Techniques, methods; Diffusion Tensor
		  Imaging, methods; Feasibility Studies; Humans; Image
		  Enhancement, methods; Image Interpretation,
		  Computer-Assisted, methods; Reproducibility of Results;
		  Sensitivity and Specificity; Ventricular Dysfunction, Left,
		  pathology},
  Language	= {eng},
  medline-pst	= {ppublish},
  owner		= {stoeckc},
  pmid		= {23001828},
  timestamp	= {2015.07.24},
  URL		= {http://dx.doi.org/10.1002/mrm.24488}
}

@Article{	  nielles2013,
  Title		= {{In vivo diffusion tensor MRI of the human heart:
		  Reproducibility of breath-hold and navigator-based
		  approaches}},
  Author	= {Nielles-Vallespin, S. and Mekkaoui, C. and Gatehouse, P.
		  and Reese, T. G. and Keegan, J. and Ferreira, P. F. and
		  Collins, S. and Speier, P. and Feiweier, T. and Silva, R.
		  and Jackowski, M. P. and Pennell, D. J. and Sosnovik, D. E.
		  and Firmin, D.},
  Journal	= {Magnetic Resonance in Medicine},
  Volume	= {70},
  Number	= {2},
  Pages		= {454--465},
  Year		= {2013},
  Publisher	= {Wiley Online Library}
}

@Article{	  nitsche-71,
  Author	= {Nitsche, J.},
  Journal	= {Abh. Math. Sem. Univ. Hamburg},
  Pages		= {9--15},
  Title		= {\"{U}ber ein {V}ariationsprinzip zur {L}\"osung von
		  {D}irichlet-{P}roblemen bei {V}erwendung von
		  {T}eilr\"aumen, die keinen {R}andbedingungen unterworfen
		  sind},
  Volume	= {36},
  Year		= {1971}
}

###Article{	  nitsche-71,
  Author	= {Nitsche, J.},
  Title		= {\"Uber ein {V}ariationsprinzip zur {L}\"osung von
		  {D}irichlet-{P}roblemen bei {V}erwendung von
		  {T}eilr\"aumen, die keinen {R}andbedingungen unterworfen
		  sind},
  Journal	= {Abh. Math. Sem. Univ. Hamburg},
  Volume	= {36},
  Year		= {1971},
  Pages		= {9--15}
}

###Article{	  nitsche-71,
  Author	= {Nitsche, J.},
  Journal	= {Abh. Math. Sem. Univ. Hamburg},
  Pages		= {9--15},
  Title		= {\"{U}ber ein {V}ariationsprinzip zur {L}\"osung von
		  {D}irichlet-{P}roblemen bei {V}erwendung von
		  {T}eilr\"aumen, die keinen {R}andbedingungen unterworfen
		  sind},
  Volume	= {36},
  Year		= {1971}
}

###Article{	  nitsche-71,
  Author	= {Nitsche, J.},
  Title		= {\"Uber ein {V}ariationsprinzip zur {L}\"osung von
		  {D}irichlet-{P}roblemen bei {V}erwendung von
		  {T}eilr\"aumen, die keinen {R}andbedingungen unterworfen
		  sind},
  Journal	= {Abh. Math. Sem. Univ. Hamburg},
  Volume	= {36},
  Year		= {1971},
  Pages		= {9--15}
}

@Article{	  nkonga-guillard-94,
  Author	= {Nkonga, B. and Guillard, H.},
  fjournal	= {Computer Methods in Applied Mechanics and Engineering},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Number	= {1-2},
  Pages		= {183--204},
  Title		= {Godunov type method on nonstructured meshes for
		  three-dimensional moving boundary problems},
  Volume	= {113},
  Year		= {1994}
}

###Article{	  nkonga-guillard-94,
  Author	= {Nkonga, B. and Guillard, H.},
  fjournal	= {Computer Methods in Applied Mechanics and Engineering},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Number	= {1-2},
  Pages		= {183--204},
  Title		= {Godunov type method on nonstructured meshes for
		  three-dimensional moving boundary problems},
  Volume	= {113},
  Year		= {1994}
}

@PhdThesis{	  nobile-01,
  Author	= {Nobile, F.},
  School	= {EPFL, Switzerland},
  Title		= {Numerical approximation of fluid-structure interaction
		  problems with application to haemodynamics},
  Year		= {2001}
}

###PhdThesis{	  nobile-01,
  Author	= {Nobile, F.},
  School	= {EPFL, Switzerland},
  Title		= {Numerical approximation of fluid-structure interaction
		  problems with application to haemodynamics},
  Year		= {2001}
}

@Article{	  nobile2011,
  Author	= {Nobile, F. and Quarteroni, A. and Ruiz-Baier, R.},
  Title		= {An active strain electromechanical model for cardiac
		  tissue},
  Journal	= {International Journal for Numerical Methods in Biomedical
		  Engineering},
  Volume	= {28},
  Number	= {1},
  Publisher	= {John Wiley & Sons, Ltd},
  ISSN		= {2040-7947},
  DOI		= {10.1002/cnm.1468},
  Pages		= {52--71},
  Keywords	= {cardiac electromechanical coupling, bidomain equations,
		  reactionâdiffusion problem, active strain, nonlinear
		  elasticity, finite elements},
  Year		= {2012}
}

@Article{	  nolte2013mbec,
  Title		= {Myocardial perfusion distribution and coronary arterial
		  pressure and flow signals: clinical relevance in relation
		  to multiscale modeling, a review},
  Author	= {Nolte, Froukje and Hyde, Eoin R. and Rolandi, Cristina and
		  Lee, Jack and van Horssen, Pepijn and Asrress, Kal and van
		  den Wijngaard, Jeroen P. H. M. and Cookson, Andrew N. and
		  van de Hoef, Tim and Chabiniok, Radomir and et al.},
  Journal	= {Medical and Biological Engineering and Computing},
  Year		= {2013},
  Number	= {11},
  Pages		= {1271--1286},
  Volume	= {51},
  DOI		= {10.1007/s11517-013-1088-8},
  File		= {:Nolte2013MBEC.pdf:PDF},
  ISSN		= {1741-0444},
  Keywords	= {Perfusion},
  Publisher	= {Springer Science + Business Media},
  URL		= {http://dx.doi.org/10.1007/s11517-013-1088-8}
}

@Unpublished{	  nolte2020cib,
  Title		= {{Validation of 4D-flow-based pressure difference
		  estimators}},
  Author	= {Nolte, David and Urbina, Jes{\'u}s and Sotelo, Julio and
		  Sok, Leo and Montalba, Cristian and Valverde, Israel and
		  Osses, Axel and Uribe, Sergio and Bertoglio, Cristobal},
  URL		= {https://hal.archives-ouvertes.fr/hal-02113750},
  Note		= {working paper or preprint},
  Year		= {2021},
  Keywords	= {validation ; 4D flow ; pressure difference ; catheter ;
		  PPE ; STE},
  PDF		= {https://hal.archives-ouvertes.fr/hal-02113750/file/preprint.pdf},
  hal_id	= {hal-02113750},
  hal_version	= {v1}
}

@Article{	  nolte_reducing_2019,
  langid	= {english},
  Title		= {Reducing the Impact of Geometric Errors in Flow
		  Computations Using Velocity Measurements},
  ISSN		= {2040-7939, 2040-7947},
  URL		= {https://onlinelibrary.wiley.com/doi/abs/10.1002/cnm.3203},
  DOI		= {10.1002/cnm.3203},
  JournalTitle	= {International Journal for Numerical Methods in Biomedical
		  Engineering},
  URLDate	= {2019-08-10},
  Date		= {2019},
  Pages		= {e3203},
  Author	= {Nolte, David and Bertoglio, Cristobal}
}

@Article{	  nolte_validation_2020,
  Title		= {Validation of {{4D}}-Flow-Based Pressure Map Estimators},
  Author	= {Nolte, David and Urbina, Jes{\'u}s and Sotelo, Julio and
		  Montalba, Cristian and Sok, Leo and Osses, Axel and
		  Bertoglio, Crist{\'o}bal and Uribe, Sergio},
  Year		= {2020},
  Journal	= {JRMI},
  Number	= {submitted}
}

@Article{	  nouri-poupaud-95,
  Author	= {Nouri, A. and Poupaud, F.},
  Journal	= {J. Diff. Eq.},
  Number	= {1},
  Pages		= {71-88},
  Title		= {An existence theorem for the multifluid {Navier-Stokes}
		  problem},
  Volume	= {122},
  Year		= {1995}
}

###Article{	  nouri-poupaud-95,
  Author	= {Nouri, A. and Poupaud, F.},
  Journal	= {J. Diff. Eq.},
  Number	= {1},
  Pages		= {71-88},
  Title		= {An existence theorem for the multifluid {Navier-Stokes}
		  problem},
  Volume	= {122},
  Year		= {1995}
}

@Article{	  nucifora2007radiology,
  Title		= {Diffusion-Tensor {MR} and Imaging and Tractography:
		  Exploring and Brain and Microstructure and Connectivity},
  Author	= {Nucifora, Paolo and Verma, Ragini and Lee, Seung-Koo and
		  Melhem, Elias},
  Journal	= {Radiology},
  Year		= {2007},
  Number	= {2},
  Volume	= {245},
  File		= {:Nucifora2007Radiology.pdf:PDF},
  review	= {Note: This copy is for your personal non-commercial use
		  only. To order presentation-ready copies for distribution
		  to your colleagues or clients, contact us at
		  www.rsna.org/rsnarights.
		  
		  Diffusion-Tensor {MR} Imaging and Tractography: Exploring
		  Brain Microstructure and Connectivity1
		  
		  Paolo G. P. Nucifora, MD, PhD Ragini Verma, PhD Diffusion
		  magnetic resonance (MR) imaging is evolving
		  
		  into a potent tool in the examination of the central
		  nervous Seung-Koo Lee, MD, PhD system. Although it is often
		  used for the detection of acute Elias R. Melhem, MD, PhD
		  ischemia, evaluation of directionality in a diffusion mea-
		  
		  surement can be useful in white matter, which demon-
		  strates strong diffusion anisotropy. Techniques such as
		  diffusion-tensor imaging offer a glimpse into brain micro-
		  structure at a scale that is not easily accessible with
		  other modalities, in some cases improving the detection and
		  characterization of white matter abnormalities. Diffusion
		  MR tractography offers an overall view of brain anatomy,
		  including the degree of connectivity between different re-
		  gions of the brain. However, optimal utilization of the
		  wide range of data provided with directional diffusion {MR}
		  mea- surements requires careful attention to acquisition
		  and postprocessing. This article will review the principles
		  of diffusion contrast and anisotropy, as well as clinical
		  appli- cations in psychiatric, developmental,
		  neurodegenerative, neoplastic, demyelinating, and other
		  types of disease.
		  
		  RSNA, 2007
		  
		  1 From the Department of Radiology, Sections of Neurora-
		  diology (P.G.P.N., E.R.M.) and Biomedical Image Analysis
		  (R.V.), Hospital of the University of Pennsylvania, 3400
		  Spruce St, Philadelphia, PA 19104; and Department of
		  Diagnostic Radiology and Research Institute of Radiologi-
		  cal Science, Yonsei University College of Medicine, Seoul,
		  Korea (S.K.L.). Received March 14, 2006; revision re-
		  quested May 18; revision received November 10; ac- cepted
		  December 18; final version accepted February 12, 2007;
		  final review by E.R.M. May 17. Address correspondence to
		  E.R.M. (e-mail: emelhem@rad .upenn.edu).
		  
		  RSNA, 2007
		  
		  Radiology: Volume 245: Number 2?November 2007 367
		  
		  REVIEWS AND COMMENTARY REVIEW}
}

@Article{	  ohno-shirota-98,
  Annote	= {mhd, existence},
  Author	= {Ohno, M. and Shirota, T.},
  code		= {mhd27},
  Journal	= {Arch. Rational Mech. Anal},
  Pages		= {259-299},
  Title		= {On the initial-boundary-value problem for the linearized
		  equations of magnetohydrodynamics},
  Volume	= {144},
  Year		= {1998}
}

###Article{	  ohno-shirota-98,
  Annote	= {mhd, existence},
  Author	= {Ohno, M. and Shirota, T.},
  code		= {mhd27},
  Journal	= {Arch. Rational Mech. Anal},
  Pages		= {259-299},
  Title		= {On the initial-boundary-value problem for the linearized
		  equations of magnetohydrodynamics},
  Volume	= {144},
  Year		= {1998}
}

@Article{	  olivetti1990circ,
  Title		= {Side-to-side slippage of myocytes participates in
		  ventricular wall remodeling acutely after myocardial
		  infarction in rats.},
  Author	= {Olivetti, G and Capasso, J M and Sonnenblick, E H and
		  Anversa, P},
  Journal	= {Circulation Research},
  Year		= {1990},
  Number	= {1},
  Pages		= {23-34},
  Volume	= {67},
  Abstract	= {To determine whether acute left ventricular failure
		  associated with myocardial infarction leads to
		  architectural changes in the spared nonischemic portion of
		  the ventricular wall, large infarcts were produced in rats,
		  and the animals were killed 2 days after surgery. Left
		  ventricular end-diastolic pressure was increased, whereas
		  left ventricular dP/dt and systolic pressure were
		  decreased, indicating the presence of severe ventricular
		  dysfunction. Absolute infarct size, determined by measuring
		  the fraction of myocyte nuclei lost from the left
		  ventricular free wall, averaged 63%. Transverse midchamber
		  diameter increased by 20%, and wall thickness diminished by
		  33%. The mural number of myocytes in this spared region of
		  the left ventricular free wall decreased by 36% and the
		  capillary profiles by 40%. The combination of these
		  functional abnormalities and structural rearrangement of
		  the wall resulted in a 7.8-fold increase in diastolic wall
		  stress. A comparable analysis of the interventricular
		  septum demonstrated a 24% reduction in the number of cells
		  across the septal thickness, whereas capillaries were
		  diminished by 26%. Moreover, a 7.2-fold elevation in
		  diastolic stress was computed in this region of the
		  ventricle. The augmentation in diastolic stress was
		  associated with a 22% and a 16% myocyte cellular
		  hypertrophy in the wall and septum, respectively. In
		  conclusion, side-to-side slippage of myocytes in the
		  myocardium occurs in association with ventricular
		  dilatation after a large myocardial infarction and
		  contributes to ventricular remodeling and the occurrence of
		  decompensated eccentric hypertrophy.},
  comments	= {"Moreover, a 7.2-fold elevation in diastolic stress was
		  computed in this region of the ventricle."},
  DOI		= {10.1161/01.RES.67.1.23},
  EPrint	= {http://circres.ahajournals.org/content/67/1/23.full.pdf+html},
  File		= {olivetti90.pdf:olivetti90.pdf:PDF},
  timestamp	= {2015/09/14},
  URL		= {http://circres.ahajournals.org/content/67/1/23.abstract}
}

@PhdThesis{	  olufsen-98,
  Author	= {Olufsen, M.S.},
  School	= {Roskilde University},
  Title		= {Modeling the Arterial System with Reference to an
		  Anesthesia Simulator},
  Year		= {1998}
}

###PhdThesis{	  olufsen-98,
  Author	= {Olufsen, M.S.},
  School	= {Roskilde University},
  Title		= {Modeling the Arterial System with Reference to an
		  Anesthesia Simulator},
  Year		= {1998}
}

@Article{	  omran_silent_2003,
  Title		= {Silent and Apparent Cerebral Embolism after Retrograde
		  Catheterisation of the Aortic Valve in Valvular Stenosis: A
		  Prospective, Randomised Study},
  Volume	= {361},
  ShortTitle	= {Silent and Apparent Cerebral Embolism after Retrograde
		  Catheterisation of the Aortic Valve in Valvular Stenosis},
  Number	= {9365},
  JournalTitle	= {The Lancet},
  Year		= {2003},
  Pages		= {1241--1246},
  Author	= {Omran, Heyder and Schmidt, Harald and Hackenbroch,
		  Matthias and Illien, Stefan and Bernhardt, Peter and von
		  der Recke, Giso and Fimmers, Rolf and Flacke, Sebastian and
		  Layer, GÃ¼nter and Pohl, Christoph},
  Options	= {useprefix=true}
}

@Article{	  oparil2018hypert,
  Author	= {Oparil, Suzanne and Acelajado, Maria Czarina and Bakris,
		  George L. and Berlowitz, Dan R. and C{\'\i}fkov{\'a},
		  Renata and Dominiczak, Anna F. and Grassi, Guido and
		  Jordan, Jens and Poulter, Neil R. and Rodgers, Anthony and
		  Whelton, Paul K.},
  Date		= {2018/03/22/online},
  date-added	= {2018-08-26 11:36:02 +0000},
  date-modified	= {2018-08-26 11:36:02 +0000},
  day		= {22},
  Journal	= {Nature Reviews Disease Primers},
  l3		= {10.1038/nrdp.2018.14; },
  m3		= {Primer},
  Month		= {03},
  Pages		= {18014 EP},
  Publisher	= {Macmillan Publishers Limited SN -},
  Title		= {Hypertension},
  ty		= {JOUR},
  URL		= {http://dx.doi.org/10.1038/nrdp.2018.14},
  Volume	= {4},
  Year		= {2018},
  bdsk-url-1	= {http://dx.doi.org/10.1038/nrdp.2018.14}
}

@InCollection{	  orbanz2011bayesian,
  Title		= {Bayesian nonparametric models},
  Author	= {Orbanz, Peter and Teh, Yee Whye},
  BookTitle	= {Encyclopedia of Machine Learning},
  Pages		= {81--89},
  Year		= {2011},
  Publisher	= {Springer}
}

@Article{	  orn2007ajc,
  Title		= {Effect of left ventricular scar size, location, and
		  transmurality on left ventricular remodeling with healed
		  myocardial infarction.},
  Author	= {Orn, Stein and Manhenke, Cord and Anand, Inder S. and
		  Squire, Iain and Nagel, Eike and Edvardsen, Thor and
		  Dickstein, Kenneth},
  Journal	= {Am J Cardiol},
  Year		= {2007},
  Month		= {Apr},
  Number	= {8},
  Pages		= {1109--1114},
  Volume	= {99},
  Abstract	= {Studies of patients with acute myocardial infarction (MI)
		  suggest that anterior transmural infarcts are associated
		  with greater left ventricular (LV) remodeling compared with
		  nontransmural nonanterior infarctions. It is unclear
		  whether this relation also exists in long-term survivors of
		  MI. Cardiac magnetic resonance imaging was used to explore
		  the relation between myocardial scar size, localization,
		  transmurality, and degree of long-term LV remodeling in
		  patients with healed MI. Subjects were recruited from a
		  registry of patients with healed MI who participated in the
		  OPTIMAAL trial. Cardiac magnetic resonance imaging was
		  performed to assess LV mass, volumes, LV ejection fraction,
		  and myocardial scarring, adjusting for myocardial ischemia.
		  Fifty-seven patients (mean age 69 +/- 10 years mean
		  ejection fraction 49 +/- 13\%) were studied 4.4 +/- 0.4
		  years after MI. Anterior scar was found in 19 patients and
		  nonanterior scar in 33, whereas 5 patients did not show
		  myocardial scar. Transmural scar was evident in 36
		  patients. In the 52 patients with scar, average total scar
		  size was 13 +/- 8\% of total LV mass. There was a strong
		  linear relation between scar size and LV end-diastolic
		  volume index (r = 0.81, p <0.0001), end-systolic volume
		  index (r = 0.86, p <0.0001), and LV ejection fraction (r =
		  -0.74, p <0.0001). In multivariate analysis, scar size was
		  the strongest independent predictor of ejection fraction
		  and LV volumes independently of scar localization and
		  transmurality. In conclusion, in the studied cohort, there
		  was a linear relation between scar size and ejection
		  fraction and LV volumes. This relation was independent of
		  scar location and transmurality.},
  DOI		= {10.1016/j.amjcard.2006.11.059},
  Institution	= {University of Bergen, Stavanger University Hospital,
		  Stavanger, Norway. drsteinorn@hotmail.com},
  Keywords	= {Aged; Cardiac Volume, physiology; Cicatrix,
		  pathology/physiopathology; Cohort Studies; Contrast Media;
		  Female; Follow-Up Studies; Gadolinium DTPA, diagnostic use;
		  Heart Ventricles, pathology; Humans; Image Enhancement;
		  Longitudinal Studies; Magnetic Resonance Imaging; Male;
		  Middle Aged; Myocardial Infarction,
		  pathology/physiopathology; Myocardial Ischemia,
		  pathology/physiopathology; Myocardium, pathology;
		  Registries; Stroke Volume, physiology; Ventricular
		  Remodeling, physiology; Wound Healing, physiology},
  Language	= {eng},
  medline-pst	= {ppublish},
  owner		= {stoeckc},
  pii		= {S0002-9149(07)00067-7},
  pmid		= {17437737},
  timestamp	= {2015.07.24},
  URL		= {http://dx.doi.org/10.1016/j.amjcard.2006.11.059}
}

@Article{	  oshinski1996improved,
  Title		= {Improved measurement of pressure gradients in aortic
		  coarctation by magnetic resonance imaging},
  Author	= {Oshinski, John N and Parks, W James and Markou, Christos P
		  and Bergman, Harris L and Larson, Blake E and Ku, David N
		  and Mukundan, Srinivasan and Pettigrew, Roderic I},
  Journal	= {J. American College of Cardiology},
  Volume	= {28},
  Number	= {7},
  Pages		= {1818--1826},
  Year		= {1996},
  Publisher	= {Am Coll Cardio Found}
}

@Article{	  osirix,
  Author	= {Rosset, A. and Spadola, L. and Ratib, O.},
  affiliation	= {Department of Radiology University of California Los
		  Angeles Los Angeles California},
  Title		= {OsiriX: An Open-Source Software for Navigating in
		  Multidimensional DICOM Images},
  Journal	= {Journal of Digital Imaging},
  Publisher	= {Springer New York},
  ISSN		= {0897-1889},
  keyword	= {Medicine},
  Pages		= {205-216},
  Volume	= {17},
  Issue		= {3},
  Note		= {10.1007/s10278-004-1014-6},
  Year		= {2004}
}

###Article{	  osirix,
  Author	= {Rosset, A. and Spadola, L. and Ratib, O.},
  affiliation	= {Department of Radiology University of California Los
		  Angeles Los Angeles California},
  Title		= {OsiriX: An Open-Source Software for Navigating in
		  Multidimensional DICOM Images},
  Journal	= {Journal of Digital Imaging},
  Publisher	= {Springer New York},
  ISSN		= {0897-1889},
  keyword	= {Medicine},
  Pages		= {205-216},
  Volume	= {17},
  Issue		= {3},
  URL		= {http://dx.doi.org/10.1007/s10278-004-1014-6},
  Note		= {10.1007/s10278-004-1014-6},
  Year		= {2004}
}

@Article{	  osman1999mrm,
  Title		= {Cardiac Motion Tracking Using {CINE} Harmonic Phase
		  ({HARP}) Magnetic Resonance Imaging},
  Author	= {Osman, Nael F. and Kerwin, William S. and {McVeigh},
		  Elliot R. and Prince, Jerry L.},
  Journal	= {Magnetic Resonance in Medicine},
  Year		= {1999},
  Month		= dec,
  Number	= {6},
  Pages		= {1048--1060},
  Volume	= {42},
  Abstract	= {This article introduces a new image processing technique
		  for rapid analysis of tagged cardiac magnetic resonance
		  image sequences. The method uses isolated spectral peaks in
		  SPAMM-tagged magnetic resonance images, which contain
		  information about cardiac motion. The inverse Fourier
		  transform of a spectral peak is a complex image whose
		  calculated angle is called a harmonic phase (HARP) image.
		  It is shown how two HARP image sequences can be used to
		  automatically and accurately track material points through
		  time. A rapid, semiautomated procedure to calculate
		  circumferential and radial Lagrangian strain from tracked
		  points is described. This new computational approach
		  permits rapid analysis and visualization of myocardial
		  strain within 5-10 min after the scan is complete. Its
		  performance is demonstrated on MR image sequences
		  reflecting both normal and abnormal cardiac motion. Results
		  from the new method are shown to compare very well with a
		  previously validated tracking algorithm.},
  ISSN		= {0740-3194},
  owner		= {david},
  pmcid		= {PMC2570035},
  pmid		= {10571926},
  timestamp	= {2015-05-28 17:38:39},
  URL		= {http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2570035/},
  URLDate	= {2015-05-28}
}

@Article{	  ott_local_2004,
  Title		= {A Local Ensemble {{Kalman}} Filter for Atmospheric Data
		  Assimilation},
  Volume	= {56},
  ISSN		= {null},
  URL		= {https://doi.org/10.3402/tellusa.v56i5.14462},
  DOI		= {10.3402/tellusa.v56i5.14462},
  Abstract	= {In this paper, we introduce a new, local formulation of
		  the ensemble Kalman filter approach for atmospheric data
		  assimilation. Our scheme is based on the hypothesis that,
		  when the Earthâs surface is divided up into local regions
		  of moderate size, vectors of the forecast uncertainties in
		  such regions tend to lie in a subspace of much lower
		  dimension than that of the full atmospheric state vector of
		  such a region. Ensemble Kalman filters, in general, take
		  the analysis resulting from the data assimilation to lie in
		  the same subspace as the expected forecast error. Under our
		  hypothesis the dimension of the subspace corresponding to
		  local regions is low. This is used in our scheme to allow
		  operations only on relatively low-dimensional matrices. The
		  data assimilation analysis is performed locally in a manner
		  allowing massively parallel computation to be exploited.
		  The local analyses are then used to construct global states
		  for advancement to the next forecast time. One advantage,
		  which may take on more importance as ever-increasing
		  amounts of remotely-sensed satellite data become available,
		  is the favorable scaling of the computational cost of our
		  method with increasing data size, as compared to other
		  methods that assimilate data sequentially. The method, its
		  potential advantages, properties, and implementation
		  requirements are illustrated by numerical experiments on
		  the Lorenz-96 model. It is found that accurate analysis can
		  be achieved at a cost which is very modest compared to that
		  of a full global ensemble Kalman filter.},
  Number	= {5},
  JournalTitle	= {Tellus A: Dynamic Meteorology and Oceanography},
  URLDate	= {2019-02-27},
  Year		= {2004-01-01},
  Pages		= {415-428},
  Author	= {Ott, Edward and Hunt, Brian R. and Szunyogh, Istvan and
		  Zimin, Aleksey V. and Kostelich, Eric J. and Corazza,
		  Matteo and Kalnay, Eugenia and Patil, D. J. and Yorke,
		  James A.}
}

@Book{		  otto2009valvular,
  Title		= {Valvular heart disease: a companion to Braunwaldâs heart
		  disease},
  Author	= {Otto, Catherine M and Bonow, Robert O},
  Journal	= {Heart Disease},
  Volume	= {55},
  Pages		= {86976},
  Year		= {2009},
  Note		= {ISBN 978-1-4160-5892-2}
}

@Article{	  otto2014reviewas,
  Title		= {Aortic-valve stenosis from patients at risk to severe
		  valve obstruction},
  Author	= {Otto, C. and Prendergast, B.},
  Journal	= {New England Journal of Medicine},
  Volume	= {371},
  Number	= {8},
  Pages		= {744--756},
  Year		= {2014},
  Publisher	= {Mass Medical Soc}
}

@Article{	  oubel2012reconstruction,
  Author	= {Estanislao Oubel and M\8Eriam Koob and Colin Studholme and
		  Jean-Louis Dietemann and Fran\8Dois Rousseau},
  Title		= {Reconstruction of scattered data in fetal diffusion {MRI}
		  },
  Journal	= {Medical Image Analysis },
  Year		= {2012},
  Volume	= {16},
  Pages		= {28 - 37},
  Number	= {1},
  ISSN		= {1361-8415}
}

@Article{	  pant2014ijnmbe,
  Author	= {Pant, S. and FabrÃÅ¡ges, B. and Gerbeau, J-F. and
		  Vignon-Clementel, I. E.},
  Title		= {A methodological paradigm for patient-specific multi-scale
		  CFD simulations: from clinical measurements to parameter
		  estimates for individual analysis},
  Journal	= {International Journal for Numerical Methods in Biomedical
		  Engineering},
  Volume	= {30},
  Number	= {12},
  ISSN		= {2040-7947},
  URL		= {http://dx.doi.org/10.1002/cnm.2692},
  DOI		= {10.1002/cnm.2692},
  Pages		= {1614--1648},
  Keywords	= {parameter estimation, unscented Kalman filter,
		  patient-specific simulations, multi-scale modelling, lumped
		  parameter models, computational fluid dynamics},
  Year		= {2014}
}

###Article{	  pant2014ijnmbe,
  Author	= {Pant, S. and Fabr\`eges, B. and Gerbeau, J-F. and
		  Vignon-Clementel, I. E.},
  Title		= {A methodological paradigm for patient-specific multi-scale
		  CFD simulations: from clinical measurements to parameter
		  estimates for individual analysis},
  Journal	= {International Journal for Numerical Methods in Biomedical
		  Engineering},
  Volume	= {30},
  Number	= {12},
  ISSN		= {2040-7947},
  DOI		= {10.1002/cnm.2692},
  Pages		= {1614--1648},
  Keywords	= {parameter estimation, unscented Kalman filter,
		  patient-specific simulations, multi-scale modelling, lumped
		  parameter models, computational fluid dynamics},
  Year		= {2014}
}

@Article{	  pant_methodological_2014,
  langid	= {english},
  Title		= {A Methodological Paradigm for Patient-Specific Multi-Scale
		  {{CFD}} Simulations: From Clinical Measurements to
		  Parameter Estimates for Individual Analysis},
  Volume	= {30},
  ISSN		= {20407939},
  URL		= {http://doi.wiley.com/10.1002/cnm.2692},
  DOI		= {10.1002/cnm.2692},
  ShortTitle	= {A Methodological Paradigm for Patient-Specific Multi-Scale
		  {{CFD}} Simulations},
  Abstract	= {A new framework for estimation of lumped (for instance,
		  Windkessel) model parameters from uncertain clinical
		  measurements is presented. The ultimate aim is to perform
		  patient-speciï¬c haemodynamic analysis. This framework is
		  based on sensitivity analysis tools and the sequential
		  estimation approach of the unscented Kalman ï¬lter.
		  Sensitivity analysis and parameter estimation are performed
		  in lumped parameter models, which act as reduced order
		  surrogates of the 3D domain for haemodynamic analysis.
		  While the goal of sensitivity analysis is to assess
		  potential identiï¬ability problems, the unscented Kalman
		  ï¬lter estimation leads to parameter estimates based on
		  clinical measurements and modelling assumptions. An
		  application of such analysis and parameter estimation
		  methodology is demonstrated for synthetic and real data.
		  Equality constraints on various physiological parameters
		  are enforced. Since the accuracy of the Windkessel
		  parameter estimates depends on the lumped parameter
		  representativeness, the latter is iteratively improved by
		  running few 3D simulations while simultaneously improving
		  the former. Such a method is applied on a patientspeciï¬c
		  aortic coarctation case. Less than 3\% and 9\% errors
		  between the clinically measured quantities and 3D
		  simulation results for rest and stress are obtained,
		  respectively. Knowledge on how these Windkessel parameters
		  change from rest to stress can thus be learned by such an
		  approach. Lastly, it is demonstrated that the proposed
		  approach is capable of dealing with a wide variety of
		  measurements and cases where the pressure and ï¬ow
		  clinical measurements are not taken simultaneously.
		  Copyright Â© 2014 John Wiley \& Sons, Ltd.},
  Number	= {12},
  JournalTitle	= {International Journal for Numerical Methods in Biomedical
		  Engineering},
  URLDate	= {2019-01-29},
  Year		= {2014-12},
  Pages		= {1614-1648},
  Author	= {Pant, S. and FabrÃ¨ges, B. and Gerbeau, J-F. and
		  Vignon-Clementel, I. E.}
}

@InCollection{	  park-felippa-deruntz-77,
  Author	= {Park, K.C. and Felippa, C.A. and Deruntz, J.A.},
  BookTitle	= {Computational Methods for Fluid-Structure Interaction
		  Problems},
  Editor	= {Belytschko. T. and Geers, T.L.},
  Pages		= {95---124},
  Publisher	= {American Society of Mechanical Engineers},
  Title		= {Stabilization of staggered solution procedures for
		  fluid-structure interaction analysis},
  Volume	= {26},
  Year		= {1977}
}

###InCollection{  park-felippa-deruntz-77,
  Author	= {Park, K.C. and Felippa, C.A. and Deruntz, J.A.},
  BookTitle	= {Computational Methods for Fluid-Structure Interaction
		  Problems},
  Editor	= {Belytschko. T. and Geers, T.L.},
  Pages		= {95---124},
  Publisher	= {American Society of Mechanical Engineers},
  Title		= {Stabilization of staggered solution procedures for
		  fluid-structure interaction analysis},
  Volume	= {26},
  Year		= {1977}
}

@Article{	  path-chf,
  Author	= {Auricchio, A. and Stellbrink, C and Sack, S. and et al.},
  Journal	= {J. Am. Coll. Cariol.},
  Pages		= {1895-1898},
  Title		= {Long-term clinical effect of hemodynamically optimized
		  cardiac resynchronization therapy in patients with heart
		  failure and ventricular conduction delay},
  Volume	= {39},
  Year		= {2002}
}

###Article{	  path-chf,
  Author	= {Auricchio, A. and Stellbrink, C and Sack, S. and et al.},
  Journal	= {J. Am. Coll. Cariol.},
  Pages		= {1895-1898},
  Title		= {Long-term clinical effect of hemodynamically optimized
		  cardiac resynchronization therapy in patients with heart
		  failure and ventricular conduction delay},
  Volume	= {39},
  Year		= {2002}
}

@Article{	  patnaik-guirguis-boris-oran-87,
  Author	= {Patnaik, G. and Guirguis, R.H. and Boris, J.P. and Oran,
		  E.S.},
  Journal	= {J. of Comput. Phys.},
  Pages		= {1-20},
  Title		= {A barely implicit correction for the flux-corrected
		  transport},
  Volume	= {71},
  Year		= {1987}
}

###Article{	  patnaik-guirguis-boris-oran-87,
  Author	= {Patnaik, G. and Guirguis, R.H. and Boris, J.P. and Oran,
		  E.S.},
  Journal	= {J. of Comput. Phys.},
  Pages		= {1-20},
  Title		= {A barely implicit correction for the flux-corrected
		  transport},
  Volume	= {71},
  Year		= {1987}
}

@InProceedings{	  peiro-shah-doorly-sherwin-caro-98,
  Address	= {London, U.K.},
  Author	= {Peir{\'o}, J. and Shah, O. and Doorly, D.J. and Sherwin,
		  S.J. and Caro, C.G.},
  BookTitle	= {6th International Conference on Numerical Grid Generation
		  in Computational Field Simulations},
  Editor	= {M. Cross and P. Eiseman and J. Ha{\"u}ser and B. K. Soni
		  and J. F. Thompson},
  Month		= {July 6-9},
  Organization	= {University of Greenwich},
  Pages		= {457-466},
  Publisher	= {International Society for Grid Generation},
  Title		= {Unstructured Viscous Mesh Generation for Haemodynamic Flow
		  Simulation Using High-Order Spectral Elements},
  Year		= {1998}
}

###InProceedings{ peiro-shah-doorly-sherwin-caro-98,
  Address	= {London, U.K.},
  Author	= {Peir{\'o}, J. and Shah, O. and Doorly, D.J. and Sherwin,
		  S.J. and Caro, C.G.},
  BookTitle	= {6th International Conference on Numerical Grid Generation
		  in Computational Field Simulations},
  Editor	= {M. Cross and P. Eiseman and J. Ha{\"u}ser and B. K. Soni
		  and J. F. Thompson},
  Month		= {July 6-9},
  Organization	= {University of Greenwich},
  Pages		= {457-466},
  Publisher	= {International Society for Grid Generation},
  Title		= {Unstructured Viscous Mesh Generation for Haemodynamic Flow
		  Simulation Using High-Order Spectral Elements},
  Year		= {1998}
}

@InCollection{	  peiro_reduced_2009,
  langid	= {english},
  Location	= {{Milano}},
  Title		= {Reduced Models of the Cardiovascular System},
  ISBN		= {978-88-470-1152-6},
  URL		= {https://doi.org/10.1007/978-88-470-1152-6_10},
  Abstract	= {Due to the large number of vessels involved and the
		  multitude of different length scales required to accurately
		  represent the flow in the various regions of the
		  cardiovascular system, simulations of the flow of blood in
		  the system based on full 3D models (see Chapters 2 and 3)
		  are beyond the capability of current computers and they
		  will be for years to come. Moreover, the huge amount of
		  data that would be generated by such simulations is costly
		  to process and of difficult clinical interpretation.},
  BookTitle	= {Cardiovascular {{Mathematics}}: {{Modeling}} and
		  Simulation of the Circulatory System},
  Series	= {{{MS}}\&{{A}}},
  Publisher	= {{Springer Milan}},
  URLDate	= {2019-02-18},
  Year		= {2009},
  Pages		= {347-394},
  Author	= {Peir{\'o}, Joaquim and Veneziani, Alessandro},
  Editor	= {Formaggia, Luca and Quarteroni, Alfio and Veneziani,
		  Alessandro},
  DOI		= {10.1007/978-88-470-1152-6_10}
}

@Article{	  pellikka2005outcomenonsimpas,
  Title		= {Outcome of 622 adults with asymptomatic, hemodynamically
		  significant aortic stenosis during prolonged follow-up},
  Author	= {Pellikka, Patricia A and Sarano, Maurice E and Nishimura,
		  Rick A and Malouf, Joseph F and Bailey, Kent R and Scott,
		  Christopher G and Barnes, Marion E and Tajik, A Jamil},
  Journal	= {Circulation},
  Volume	= {111},
  Number	= {24},
  Pages		= {3290--3295},
  Year		= {2005},
  Publisher	= {Am Heart Assoc}
}

@Article{	  pennell2010,
  Author	= {Pennell, D.},
  Title		= {Cardiovascular Magnetic Resonance},
  Volume	= {121},
  Number	= {5},
  Pages		= {692--705},
  Year		= {2010},
  DOI		= {10.1161/CIRCULATIONAHA.108.811547},
  Publisher	= {American Heart Association, Inc.},
  ISSN		= {0009-7322},
  URL		= {http://circ.ahajournals.org/content/121/5/692},
  EPrint	= {http://circ.ahajournals.org/content/121/5/692.full.pdf},
  Journal	= {Circulation}
}

@Article{	  perego-veneziani-vergara-11,
  Author	= {Perego, M. and Veneziani, A. and Vergara, C.},
  Journal	= {SIAM J. Sc. Comp.},
  Number	= {3},
  Pages		= {1181-1211},
  Title		= {{A variational approach for estimating the compliance of
		  the cardiovascular tissue: An inverse fluid-structure
		  interaction problem}},
  Volume	= {33},
  Year		= 2011
}

###Article{	  perego-veneziani-vergara-11,
  Author	= {Perego, M. and Veneziani, A. and Vergara, C.},
  Journal	= {SIAM J. Sc. Comp.},
  Number	= {3},
  Pages		= {1181-1211},
  Title		= {{A variational approach for estimating the compliance of
		  the cardiovascular tissue: An inverse fluid-structure
		  interaction problem}},
  Volume	= {33},
  Year		= 2011
}

@Article{	  perego_variational_2011,
  Title		= {A Variational Approach for Estimating the Compliance of
		  the Cardiovascular Tissue: {{An}} Inverse Fluid-Structure
		  Interaction Problem},
  Volume	= {33},
  ShortTitle	= {A Variational Approach for Estimating the Compliance of
		  the Cardiovascular Tissue},
  Number	= {3},
  JournalTitle	= {SIAM Journal on Scientific Computing},
  Year		= {2011},
  Pages		= {1181--1211},
  Author	= {Perego, Mauro and Veneziani, Alessandro and Vergara,
		  Christian}
}

@InProceedings{	  peric-dettmer-05,
  Author	= {Peri{\'c}, D. and Dettmer, W. G.},
  BookTitle	= {5th international Conference on Computational of Shell \&
		  Spatial Structures},
  Organization	= {IASS-IACM},
  Title		= {A computational strategy for interaction of fluid flow
		  with spatial structures},
  Year		= {2005}
}

###InProceedings{ peric-dettmer-05,
  Author	= {Peri{\'c}, D. and Dettmer, W. G.},
  BookTitle	= {5th international Conference on Computational of Shell \&
		  Spatial Structures},
  Organization	= {IASS-IACM},
  Title		= {A computational strategy for interaction of fluid flow
		  with spatial structures},
  Year		= {2005}
}

@InProceedings{	  perktold-rappitsch-94,
  Author	= {Perktold, K. and Rappitsch, G.},
  BookTitle	= {Computational Methods for Fluid-Structure interaction},
  code		= {fsi12},
  Editor	= {Crolet, J. and Ohayon, R.},
  Publisher	= {Pitman},
  Title		= {Mathematical modeling of local arterial flow and vessel
		  mechanics},
  Year		= {1994}
}

###InProceedings{ perktold-rappitsch-94,
  Author	= {Perktold, K. and Rappitsch, G.},
  BookTitle	= {Computational Methods for Fluid-Structure interaction},
  code		= {fsi12},
  Editor	= {Crolet, J. and Ohayon, R.},
  Publisher	= {Pitman},
  Title		= {Mathematical modeling of local arterial flow and vessel
		  mechanics},
  Year		= {1994}
}

@Article{	  perktold-rappitsch-95,
  Author	= {Perktold, K. and Rappitsch, G.},
  Journal	= {J. of Biomech.},
  Pages		= {845--856},
  Title		= {Computer simulation of Local Blood Flow and Vessel
		  Mechanics in a Compliant Carotid Artery Bifurcation Model},
  Volume	= {28},
  Year		= {1995}
}

###Article{	  perktold-rappitsch-95,
  Author	= {Perktold, K. and Rappitsch, G.},
  Journal	= {J. of Biomech.},
  Pages		= {845--856},
  Title		= {Computer simulation of Local Blood Flow and Vessel
		  Mechanics in a Compliant Carotid Artery Bifurcation Model},
  Volume	= {28},
  Year		= {1995}
}

@Book{		  perthame,
  Author	= {Perthame, B.},
  Note		= {to appear},
  Publisher	= {Oxford Univ. Press.},
  Title		= {Kinetic formulation of conservation laws}
}

###Book{	  perthame,
  Author	= {Perthame, B.},
  Note		= {to appear},
  Publisher	= {Oxford Univ. Press.},
  Title		= {Kinetic formulation of conservation laws}
}

@Article{	  petersen2006r,
  Title		= {Myocardial tissue phase mapping with cine phase-contrast
		  mr imaging: regional wall motion analysis in healthy
		  volunteers.},
  Author	= {Petersen, Steffen E. and Jung, Bernd A. and Wiesmann,
		  Frank and Selvanayagam, Joseph B. and Francis, Jane M. and
		  Hennig, Juergen and Neubauer, Stefan and Robson, Matthew
		  D.},
  Journal	= {Radiology},
  Year		= {2006},
  Month		= {Mar},
  Number	= {3},
  Pages		= {816--826},
  Volume	= {238},
  Abstract	= {To establish prospectively a database of normal
		  three-dimensional systolic and diastolic endocardial and
		  epicardial velocity values for all myocardial segments in
		  healthy volunteers by using cine phase-contrast velocity
		  magnetic resonance imaging, also called tissue phase
		  mapping (TPM).The study was approved by the institutional
		  ethics committee and was conducted according to principles
		  of the Declaration of Helsinki; each subject provided
		  informed written consent. Ninety-six healthy volunteers (57
		  [59\%] men, 39 [41\%] women; mean age, 38 years +/- 12
		  [standard deviation]) underwent cardiac phase-contrast
		  imaging with a black blood segmented k-space gradient-echo
		  sequence for the analysis of three-dimensional myocardial
		  velocity with high spatial resolution at 1.5 T on basal,
		  midventricular, and apical short-axis views. Eighteen
		  consecutive volunteers were imaged twice to determine
		  interstudy reproducibility, and intra- and interobserver
		  variability values were analyzed. Systolic and diastolic
		  velocity curves were analyzed for peak velocity and time to
		  peak velocity in the radial, circumferential, and
		  longitudinal directions, as well as for torsion rate and
		  longitudinal strain rate. Mixed-effects models with a
		  random intercept for volunteers were used to test
		  differences among the three ventricular sections and the
		  transmural, endocardial, and epicardial parameters.TPM
		  enabled reproducible assessment of myocardial velocity with
		  small intra- and interobserver variability values. Systolic
		  peak radial velocity was lowest at the apical level (P <
		  .001); diastolic peak radial velocity was similar at all
		  three myocardial levels (P = .73). As viewed from the apex,
		  a relative counterclockwise rotation during systole was
		  followed by a relative clockwise rotation of the apex
		  against the base. Diastolic and systolic peak longitudinal
		  velocity values decreased from base to apex (P < .001). A
		  gradient between endocardium and epicardium was observed
		  for radial velocity values, with greater endocardial
		  velocity values (P < .001).TPM is a reproducible
		  comprehensive modality for assessment of regional wall
		  motion, and intra- and interobserver variability values are
		  low.},
  DOI		= {10.1148/radiol.2383041992},
  Institution	= {University of Oxford Centre for Clinical Magnetic
		  Resonance Research, Department of Cardiovascular Medicine,
		  John Radcliffe Hospital, England.
		  steffen.petersen@cardiov.ox.ac.uk},
  Keywords	= {Adult; Diastole, physiology; Female; Humans; Imaging,
		  Three-Dimensional; Magnetic Resonance Imaging, Cine; Male;
		  Myocardial Contraction, physiology; Observer Variation;
		  Prospective Studies; Reference Values; Reproducibility of
		  Results; Systole, physiology},
  Language	= {eng},
  medline-pst	= {ppublish},
  owner		= {stoeckc},
  pii		= {2383041992},
  pmid		= {16424246},
  timestamp	= {2015.07.24},
  URL		= {http://dx.doi.org/10.1148/radiol.2383041992}
}

@Article{	  peterson-88,
  Annote	= {mhd, existence, finite element},
  Author	= {Peterson, J. S.},
  code		= {mhd9},
  Journal	= {Num. Meth. Partial Diff. Eq.},
  Pages		= {57-68},
  Title		= {On the finite element approximation of incompressible
		  flows of an electrically conducting fluid},
  Volume	= {4},
  Year		= {1988}
}

###Article{	  peterson-88,
  Annote	= {mhd, existence, finite element},
  Author	= {Peterson, J. S.},
  code		= {mhd9},
  Journal	= {Num. Meth. Partial Diff. Eq.},
  Pages		= {57-68},
  Title		= {On the finite element approximation of incompressible
		  flows of an electrically conducting fluid},
  Volume	= {4},
  Year		= {1988}
}

@Misc{		  petsc-web-page,
  Author	= {Satish Balay and Shrirang Abhyankar and Mark~F. Adams and
		  Jed Brown and Peter Brune and Kris Buschelman and Lisandro
		  Dalcin and Victor Eijkhout and William~D. Gropp and Dinesh
		  Kaushik and Matthew~G. Knepley and Lois Curfman McInnes and
		  Karl Rupp and Barry~F. Smith and Stefano Zampini and Hong
		  Zhang and Hong Zhang},
  Title		= {{PETS}c {W}eb page},
  URL		= {http://www.mcs.anl.gov/petsc},
  HowPublished	= {\url{http://www.mcs.anl.gov/petsc}},
  Year		= {2016}
}

@Article{	  pfaller2018ipod,
  Title		= {Parametric model order reduction using POD for coupled
		  nonlinear cardiac mechanics},
  Author	= {Pfaller, Martin R and Lang, Johannes and Varona, Maria
		  Cruz and Biehler, Jonas and Bertoglio, Crist{\'o}bal and
		  Wall, Wolfgang A},
  Note		= {In proceedings of the 6th European Conference on
		  Computational Mechanics (ECCM 6)},
  Year		= {2018}
}

@Article{	  pfeffer90circ,
  Title		= {Ventricular remodeling after myocardial infarction.
		  Experimental observations and clinical implications.},
  Author	= {Pfeffer, M A and Braunwald, E},
  Journal	= {Circulation},
  Year		= {1990},
  Number	= {4},
  Pages		= {1161-72},
  Volume	= {81},
  Abstract	= {An acute myocardial infarction, particularly one that is
		  large and transmural, can produce alterations in the
		  topography of both the infarcted and noninfarcted regions
		  of the ventricle. This remodeling can importantly affect
		  the function of the ventricle and the prognosis for
		  survival. In the early period, infarct expansion has been
		  recognized by echocardiography as a lengthening of the
		  noncontractile region. The noninfarcted region also
		  undergoes an important lengthening that is consistent with
		  a secondary volume-overload hypertrophy and that can be
		  progressive. The extent of ventricular enlargement after
		  infarction is related to the magnitude of the initial
		  damage to the myocardium and, although an increase in
		  cavity size tends to restore stroke volume despite a
		  persistently depressed ejection fraction, ventricular
		  dilation has been associated with a reduction in survival.
		  The process of ventricular enlargement can be influenced by
		  three interdependent factors, that is, infarct size,
		  infarct healing, and ventricular wall stresses. A most
		  effective way to prevent or minimize the increase in
		  ventricular size after infarction and the consequent
		  adverse effect on prognosis is to limit the initial insult.
		  Acute reperfusion therapy has been consistently shown to
		  result in a reduction in ventricular volume. The
		  reestablishment of blood flow to the infarcted region, even
		  beyond the time frame for myocyte salvage, has beneficial
		  effects in attenuating ventricular enlargement. The process
		  of scarification can be interfered with during the acute
		  infarct period by the administration of
		  glucocorticosteroids and nonsteroidal antiinflammatory
		  agents, which result in thinner infarcts and greater
		  degrees of infarct expansion. Modification of distending or
		  deforming forces can importantly influence ventricular
		  enlargement. Even short-term augmentations in afterload
		  have deleterious long-term effects on ventricular
		  topography. Conversely, judicious use of nitroglycerin
		  seems to be associated with an attenuation of infarct
		  expansion and long-term improvement in clinical outcome.
		  Long-term therapy with an angiotensin converting enzyme
		  inhibitor can favorably alter the loading conditions on the
		  left ventricle and reduce progressive ventricular
		  enlargement as demonstrated in both experimental and
		  clinical studies. With the former therapy, this attenuation
		  of ventricular enlargement was associated with a
		  prolongation in survival. The long-term clinical
		  consequences of long-term angiotensin converting enzyme
		  inhibitor therapy after myocardial infarction is currently
		  being evaluated. Although studies directed at attenuating
		  left ventricular remodeling after infarction are in the
		  early stages, it does seem that this will be an important
		  area in which future research might improve long-term
		  outcome after infarction.},
  DOI		= {10.1161/01.CIR.81.4.1161},
  EPrint	= {http://circ.ahajournals.org/content/81/4/1161.full.pdf+html},
  File		= {pfeffer90.pdf:pfeffer90.pdf:PDF},
  timestamp	= {2015/09/10},
  URL		= {http://circ.ahajournals.org/content/81/4/1161.abstract}
}

@Article{	  pham-verron-gourdeau-98,
  Author	= {Pham, D.-T. and Verron, J. and Gourdeau, L.},
  date-added	= {2009-03-10 11:40:28 -0700},
  date-modified	= {2009-03-10 12:25:39 -0700},
  DOI		= {DOI: 10.1016/S1251-8050(97)86815-2},
  ISSN		= {1251-8050},
  Journal	= {Comptes Rendus de l'Acad{\'e}mie des Sciences - Series IIA
		  },
  Number	= {4},
  Pages		= {255--260},
  Title		= {Filtres de {K}alman singuliers {\'e}volutifs pour
		  l'assimilation de donn{\'e}es en oc{\'e}anographie},
  Volume	= {326},
  Year		= {1998}
}

###Article{	  pham-verron-gourdeau-98,
  Author	= {Pham, D.-T. and Verron, J. and Gourdeau, L.},
  date-added	= {2009-03-10 11:40:28 -0700},
  date-modified	= {2009-03-10 12:25:39 -0700},
  DOI		= {DOI: 10.1016/S1251-8050(97)86815-2},
  ISSN		= {1251-8050},
  Journal	= {Comptes Rendus de l'Acad{\'e}mie des Sciences - Series IIA
		  },
  Number	= {4},
  Pages		= {255--260},
  Title		= {Filtres de {K}alman singuliers {\'e}volutifs pour
		  l'assimilation de donn{\'e}es en oc{\'e}anographie},
  Volume	= {326},
  Year		= {1998},
  bdsk-url-1	= {http://www.sciencedirect.com/science/article/B6VJ3-3WSVDC0-5/2/19eded8bacefb96524950071ecbf484d},
  bdsk-url-2	= {http://dx.doi.org/10.1016/S1251-8050(97)86815-2}
}

@Article{	  pibarot-2000,
  Author	= {Garcia, D. and Pibarot, P. and Dumesnil, J. and Sakr, F.
		  and Durand, L.-G.},
  Journal	= {Circulation},
  Pages		= {765--771},
  Title		= {Assessment of Aortic Valve Stenosis Severity, A new index
		  based on the energy loss concept},
  Volume	= {101},
  Year		= {2000}
}

###Article{	  pibarot-2000,
  Author	= {Garcia, D. and Pibarot, P. and Dumesnil, J. and Sakr, F.
		  and Durand, L.-G.},
  Journal	= {Circulation},
  Pages		= {765--771},
  Title		= {Assessment of Aortic Valve Stenosis Severity, A new index
		  based on the energy loss concept},
  Volume	= {101},
  Year		= {2000}
}

@Article{	  pieske2004ehjs,
  Title		= {Reverse remodeling in heart failure {\textendash} fact or
		  fiction?},
  Author	= {Pieske, Burkert},
  Journal	= {European Heart Journal Supplements},
  Year		= {2004},
  Number	= {suppl D},
  Pages		= {D66--D78},
  Volume	= {6},
  Abstract	= {Maladaptive remodeling is associated with impaired
		  prognosis in heart failure, and prevention of remodeling is
		  an established therapeutic target. However, it is much less
		  clear whether remodeling may be reversed once it has
		  developed. In the last decade, anti-neuroendocrine therapy
		  with ACE inhibitors, and even more potently, beta-blockers,
		  was shown to improve surrogate markers for reverse
		  remodeling, such as ejection fraction (EF), ventricular
		  volumes, and mass. For beta-blockers, reverse molecular
		  remodeling was also shown in biopsy specimens on the
		  cellular and subcellular level. Both moderate endurance
		  training and continuous positive airway pressure (CPAP)
		  therapy in heart failure patients with sleep apnea induce
		  reverse remodeling. Cardiac resynchronization therapy
		  improves exercise capacity and quality of life in patients
		  with ventricular dyssynchrony and is clearly associated
		  with geometrical and functional reverse remodeling over
		  time. Whether this translates into improved survival
		  remains to be demonstrated. Surgical approaches for reverse
		  remodeling, such as mitral valve replacement,
		  aneurysmectomy, and volume reduction (Batista procedure)
		  have been developed, but may also be associated with high
		  perioperative mortality. Mechanical unloading of the
		  failing ventricles by left ventricular assist systems
		  (LVAD) induces well-characterized reverse remodeling on the
		  cellular and subcellular level. However, persistent
		  functional improvement in a significant subset of patients
		  that would allow weaning form the device is still under
		  debate. Novel, complementary approaches, such as gene
		  transfer or stem cell therapy are under pre-clinical and
		  clinical investigation. Taken together, reverse remodeling
		  can be induced by pharmacological and non-pharmacological
		  therapy and may serve as a surrogate parameter for
		  therapeutic success in the individual patient. Since
		  maladaptive remodeling is associated with poor prognosis,
		  identification of novel strategies to reverse this process
		  remains a promising target.},
  DOI		= {10.1016/j.ehjsup.2004.05.019},
  File		= {pieske04.pdf:pieske04.pdf:PDF},
  ISSN		= {1520-765X},
  Publisher	= {The Oxford University Press},
  timestamp	= {2015/09/11}
}

@Article{	  pigny-moreau-92,
  Author	= {Pigny, S. and Moreau, R.},
  Journal	= {Eur. J. Mech., B/ Fluids},
  Number	= {1},
  Pages		= {1--20},
  Title		= {Stability of fluid interfaces carrying an electric current
		  in the presence of a magnetic field},
  Volume	= {11},
  Year		= {1992}
}

###Article{	  pigny-moreau-92,
  Author	= {Pigny, S. and Moreau, R.},
  Journal	= {Eur. J. Mech., B/ Fluids},
  Number	= {1},
  Pages		= {1--20},
  Title		= {Stability of fluid interfaces carrying an electric current
		  in the presence of a magnetic field},
  Volume	= {11},
  Year		= {1992}
}

@PhdThesis{	  piperno-95,
  Author	= {Piperno, S.},
  School	= {Ecole Nationale des Ponts et Chauss{\'e}es},
  Title		= {Simulation num{\'e}rique de ph{\'e}nom{\`e}nes
		  d'interaction fluide-structure},
  Year		= {1995}
}

###PhdThesis{	  piperno-95,
  Author	= {Piperno, S.},
  School	= {Ecole Nationale des Ponts et Chauss{\'e}es},
  Title		= {Simulation num{\'e}rique de ph{\'e}nom{\`e}nes
		  d'interaction fluide-structure},
  Year		= {1995}
}

@Article{	  piperno-97,
  Author	= {Piperno, S.},
  code		= {fsi 17},
  fjournal	= {International Journal for Numerical Methods in Fluids},
  Journal	= {Internat. J. Numer. Methods Fluids},
  Number	= {10},
  Pages		= {1207--1226},
  Title		= {Explicit/implicit fluid/structure staggered procedures
		  with a structural predictor and fluid subcycling for 2{D}
		  inviscid aeroelastic simulations},
  Volume	= {25},
  Year		= {1997}
}

###Article{	  piperno-97,
  Author	= {Piperno, S.},
  code		= {fsi 17},
  fjournal	= {International Journal for Numerical Methods in Fluids},
  Journal	= {Internat. J. Numer. Methods Fluids},
  Number	= {10},
  Pages		= {1207--1226},
  Title		= {Explicit/implicit fluid/structure staggered procedures
		  with a structural predictor and fluid subcycling for 2{D}
		  inviscid aeroelastic simulations},
  Volume	= {25},
  Year		= {1997}
}

@Article{	  piperno-farhat-larrouturou-95,
  Author	= {Piperno, S. and Farhat, C. and Larrouturou, B.},
  code		= {fsi 18},
  Journal	= {Comp. Meth. Appl. Mech. Engrg.},
  Pages		= {79-112},
  Title		= {Partitioned procedures for the transient solution of
		  coupled aeroelastic problems. {Part I}: {M}odel problem,
		  theory and two-dimensional application},
  Volume	= {124},
  Year		= {1995}
}

###Article{	  piperno-farhat-larrouturou-95,
  Author	= {Piperno, S. and Farhat, C. and Larrouturou, B.},
  code		= {fsi 18},
  Journal	= {Comp. Meth. Appl. Mech. Engrg.},
  Pages		= {79-112},
  Title		= {Partitioned procedures for the transient solution of
		  coupled aeroelastic problems. {Part I}: {M}odel problem,
		  theory and two-dimensional application},
  Volume	= {124},
  Year		= {1995}
}

@Article{	  pirola_choice_2017,
  Title		= {On the Choice of Outlet Boundary Conditions for
		  Patient-Specific Analysis of Aortic Flow Using
		  Computational Fluid Dynamics},
  Volume	= {60},
  JournalTitle	= {Journal of Biomechanics},
  Year		= {2017},
  Pages		= {15--21},
  Author	= {Pirola, S. and Cheng, Z. and Jarral, O. A. and O'Regan, D.
		  P. and Pepper, J. R. and Athanasiou, T. and Xu, X. Y.}
}

@Book{		  pironneau,
  Author	= {Pironneau, O.},
  Publisher	= {Wiley},
  Title		= {Finite element methods for fluids},
  Year		= {1989}
}

###Book{	  pironneau,
  Author	= {Pironneau, O.},
  Publisher	= {Wiley},
  Title		= {Finite element methods for fluids},
  Year		= {1989}
}

@Article{	  ploegstra2018followup,
  Title		= "Pulmonary arterial stiffness indices assessed by
		  intravascular ultrasound in children with early pulmonary
		  vascular disease: Prediction of advanced disease and
		  mortality during 20-year follow-up",
  Abstract	= "Aims Prognosis in children with pulmonary vascular disease
		  (PVD) is closely linked to right ventricular (RV) failure
		  due to increased RV-afterload. Pulmonary arterial (PA)
		  stiffening is known to occur early in the course of PVD and
		  constitutes a main component of RV-afterload. This study
		  aimed to evaluate the clinical value of PA-stiffness in
		  children with PVD by determining its association with
		  advanced pulmonary arterial hypertension (PAH) and
		  mortality at long-term follow-up.Methods and results
		  Forty-one children with various stages of arterial PVD,
		  defined as mean PA-pressure >= 20 mmHg and/or
		  pulmonary-to-systemic flow-ratio >= 1.2, and mean pulmonary
		  capillary wedge pressureConclusion In children with PVD,
		  PA-stiffness indices assessed by IVUS predict advanced PAH
		  and mortality at long term follow-up. Especially in
		  patients with favourable haemodynamics, assessment of
		  intrinsic PA-stiffness may enhance the prognostication of
		  disease progression and survival.",
  Keywords	= "pulmonary vascular disease, pulmonary arterial
		  hypertension, congenital heart disease, outcome,
		  paediatrics, stiffness, CONGENITAL HEART-DISEASE,
		  HYPERTENSION, DIAGNOSIS, THERAPY, DISTENSIBILITY,
		  GUIDELINES, RESISTANCE, DEFECTS, CLOSURE, REPAIR",
  Author	= "Mark-Jan Ploegstra and Brokelman, {Jody G. M.} and
		  Roos-Hesselink, {Jolien W.} and Douwes, {Johannes M.} and
		  {van Osch-Gevers}, {Lenny M.} and Hoendermis, {Elke S.} and
		  {van den Bosch}, {Annemien E.} and Maarten Witsenburg and
		  Beatrijs Bartelds and Hillege, {Hans L.} and Berger, {Rolf
		  M. F.}",
  Year		= "2018",
  Month		= "2",
  day		= "1",
  DOI		= "10.1093/ehjci/jex015",
  Language	= "English",
  Volume	= "19",
  Pages		= "216--224",
  Journal	= "European heart journal-Cardiovascular imaging",
  ISSN		= "2047-2404",
  Publisher	= "Oxford University Press",
  Number	= "2"
}

@Article{	  pm-dc-plt-09,
  Author	= {Moireau, P. and Chapelle, D. and Le Tallec, P.},
  Title		= {Filtering for distributed mechanical systems using
		  position measurements: Perspectives in medical imaging},
  Journal	= {Inverse Problems},
  Volume	= 25,
  Number	= 3,
  Pages		= {035010 (25pp)},
  Note		= {doi:10.1088/0266-5611/25/3/035010},
  Year		= 2009
}

###Article{	  pm-dc-plt-09,
  Author	= {Moireau, P. and Chapelle, D. and Le Tallec, P.},
  Title		= {Filtering for distributed mechanical systems using
		  position measurements: Perspectives in medical imaging},
  Journal	= {Inverse Problems},
  Volume	= 25,
  Number	= 3,
  Pages		= {035010 (25pp)},
  Note		= {doi:10.1088/0266-5611/25/3/035010},
  Year		= 2009
}

@Article{	  pontrelli-00,
  Author	= {Pontrelli, G.},
  Journal	= {Math. Models Methods Appl. Sci.},
  Number	= {2},
  Pages		= {187--202},
  Title		= {Blood flow through a circular pipe with an impulsive
		  pressure gradient},
  Volume	= {10},
  Year		= {2000}
}

###Article{	  pontrelli-00,
  Author	= {Pontrelli, G.},
  Journal	= {Math. Models Methods Appl. Sci.},
  Number	= {2},
  Pages		= {187--202},
  Title		= {Blood flow through a circular pipe with an impulsive
		  pressure gradient},
  Volume	= {10},
  Year		= {2000}
}

@Book{		  pope_turbulent_2000,
  Title		= {Turbulent Flows},
  Author	= {Pope, S. B.},
  Year		= {2000},
  Publisher	= {{Cambridge University Press}},
  Address	= {{Cambridge ; New York}},
  ISBN		= {978-0-521-59125-6 978-0-521-59886-6},
  lccn		= {QA913 .P64 2000}
}

###Book{	  pope_turbulent_2000,
  Location	= {{Cambridge ; New York}},
  Title		= {Turbulent Flows},
  ISBN		= {978-0-521-59125-6 978-0-521-59886-6},
  PageTotal	= {771},
  Publisher	= {{Cambridge University Press}},
  Date		= {2000},
  Author	= {Pope, S. B.}
}

@Article{	  poprawski-etal-09,
  Author	= {Poprawski, K. and Michalski, M. and Lawniczak, M. and
		  Lacka, K.},
  Title		= {Cardiovascular abnormalities in patients with Turner
		  syndrome according to karyotype: own experience and
		  literature review},
  Journal	= {Pol Arch Med Wewn},
  Volume	= {119},
  Year		= {2009},
  Number	= {7-8},
  Pages		= {453-60},
  pubmedid	= {19776685},
  ISSN		= {0032-3772}
}

###Article{	  poprawski-etal-09,
  Author	= {Poprawski, K. and Michalski, M. and Lawniczak, M. and
		  Lacka, K.},
  Title		= {Cardiovascular abnormalities in patients with Turner
		  syndrome according to karyotype: own experience and
		  literature review},
  Journal	= {Pol Arch Med Wewn},
  Volume	= {119},
  Year		= {2009},
  Number	= {7-8},
  Pages		= {453-60},
  URL		= {http://www.biomedsearch.com/nih/Cardiovascular-abnormalities-in-patients-with/19776685.html},
  pubmedid	= {19776685},
  ISSN		= {0032-3772}
}

@Article{	  potanin-93,
  Annote	= {blood, aggregation, shear flow},
  Author	= {Potanin, A.A.},
  code		= {cel1},
  Journal	= {J. Colloid Interface Sci.},
  Pages		= {399-410},
  Title		= {On the computer simulation of the deformation and breakup
		  of colloidal aggregates in shear flow},
  Volume	= {157},
  Year		= {1993}
}

###Article{	  potanin-93,
  Annote	= {blood, aggregation, shear flow},
  Author	= {Potanin, A.A.},
  code		= {cel1},
  Journal	= {J. Colloid Interface Sci.},
  Pages		= {399-410},
  Title		= {On the computer simulation of the deformation and breakup
		  of colloidal aggregates in shear flow},
  Volume	= {157},
  Year		= {1993}
}

@Article{	  potanin-uriev-91,
  Annote	= {blood, aggregation, shear flow},
  Author	= {Potanin, A.A. and Uriev, N.B.},
  code		= {cel2},
  Journal	= {J. Colloid. interface sci.},
  Number	= {2},
  Pages		= {385-395},
  Title		= {Microrheological models of aggregated suspensions in shear
		  flow},
  Volume	= {142},
  Year		= {1990}
}

###Article{	  potanin-uriev-91,
  Annote	= {blood, aggregation, shear flow},
  Author	= {Potanin, A.A. and Uriev, N.B.},
  code		= {cel2},
  Journal	= {J. Colloid. interface sci.},
  Number	= {2},
  Pages		= {385-395},
  Title		= {Microrheological models of aggregated suspensions in shear
		  flow},
  Volume	= {142},
  Year		= {1990}
}

@Article{	  potocnik-laroche-01,
  Author	= {Potocnik, V., Laroche, F.},
  Journal	= {Light Metal},
  Pages		= {419-425},
  Title		= {Comparison of measured and calculated metal pad velocities
		  for different prebake cell designs},
  Year		= {2001}
}

###Article{	  potocnik-laroche-01,
  Author	= {Potocnik, V., Laroche, F.},
  Journal	= {Light Metal},
  Pages		= {419-425},
  Title		= {Comparison of measured and calculated metal pad velocities
		  for different prebake cell designs},
  Year		= {2001}
}

@Article{	  potse-etal-06,
  Author	= {Potse, M. and Dube, B. and Richer, J. and Vinet, A. and
		  Gulrajani, R.M.},
  Journal	= {IEEE Transactions on Biomedical Engineering},
  Volume	= {53},
  Issue		= {},
  Pages		= {2425â-2435},
  Title		= {A comparison of monodomain and bidomain reaction-diffusion
		  models for action potential propagation in the human
		  heart},
  Year		= {2006}
}

@PhdThesis{	  poussineau-07,
  Author	= {Poussineau, Nicole},
  Title		= {R\'eduction variationnelle d'un couplage fluide-structure.
		  Application \`a l'h\'emodynamique.},
  School	= {Universit\'e Pierre et Marie Curie, Paris 6},
  Year		= 2007
}

###PhdThesis{	  poussineau-07,
  Author	= {Poussineau, Nicole},
  Title		= {R\'eduction variationnelle d'un couplage fluide-structure.
		  Application \`a l'h\'emodynamique.},
  School	= {Universit\'e Pierre et Marie Curie, Paris 6},
  Year		= 2007
}

@Article{	  presbitero1987long,
  Title		= {Long term results (15-30 years) of surgical repair of
		  aortic coarctation.},
  Author	= {Presbitero, P and Demarie, D and Villani, M and Perinetto,
		  E Actis and Riva, G and Orzan, F and Bobbio, M and Morea, M
		  and Brusca, A},
  Journal	= {British heart journal},
  Volume	= {57},
  Number	= {5},
  Pages		= {462--467},
  Year		= {1987},
  Publisher	= {BMJ Publishing Group Ltd and British Cardiovascular
		  Society}
}

###Article{	  presbitero1987long,
  Title		= {Long term results (15-30 years) of surgical repair of
		  aortic coarctation.},
  Author	= {Presbitero, P and Demarie, D and Villani, M and Perinetto,
		  E Actis and Riva, G and Orzan, F and Bobbio, M and Morea, M
		  and Brusca, A},
  Journal	= {British heart journal},
  Volume	= {57},
  Number	= {5},
  Pages		= {462--467},
  Year		= {1987},
  Publisher	= {BMJ Publishing Group Ltd and British Cardiovascular
		  Society}
}

@Book{		  preumont-02,
  Author	= {Preumont, A.},
  date-added	= {2009-03-10 12:19:26 -0700},
  date-modified	= {2009-03-10 12:19:35 -0700},
  Edition	= {2nd},
  Month		= {February},
  Publisher	= {Kluwer Academic Publishers},
  Title		= {Vibration Control of Active Structures, An Introduction},
  Year		= {2002}
}

###Book{	  preumont-02,
  Author	= {Preumont, A.},
  date-added	= {2009-03-10 12:19:26 -0700},
  date-modified	= {2009-03-10 12:19:35 -0700},
  Edition	= {2nd},
  Month		= {February},
  Publisher	= {Kluwer Academic Publishers},
  Title		= {Vibration Control of Active Structures, An Introduction},
  Year		= {2002}
}

@Article{	  pries2008review,
  Title		= {A review of methods for assessment of coronary
		  microvascular disease in both clinical and experimental
		  settings},
  Author	= {Pries, Axel R and Habazettl, Helmut and Ambrosio, Giuseppe
		  and Hansen, Peter Riis and Kaski, Juan Carlos and
		  Sch{\"a}chinger, Volker and Tillmanns, Harald and Vassalli,
		  Giuseppe and Tritto, Isabella and Weis, Michael and others},
  Journal	= {Cardiovascular research},
  Year		= {2008},
  Publisher	= {The Oxford University Press}
}

@MastersThesis{	  proudfoot-09,
  Author	= {Proudfoot, N.},
  School	= {McMaster University},
  Title		= {The acute effects of moderate intensity exercise on
		  vascular stiffness in children with repaired coarctation of
		  the aorta},
  Year		= {2009}
}

###MastersThesis{ proudfoot-09,
  Author	= {Proudfoot, N.},
  School	= {McMaster University},
  Title		= {The acute effects of moderate intensity exercise on
		  vascular stiffness in children with repaired coarctation of
		  the aorta},
  Year		= {2009}
}

@Article{	  quaini-quarteroni-07,
  Author	= {Quaini, A. and Quarteroni, A.},
  Journal	= {Math. Models Methods Appl. Sci.},
  Number	= {6},
  Pages		= {957--983},
  Title		= {A semi-implicit approach for fluid-structure interaction
		  based on an algebraic fractional step method},
  Volume	= {17},
  Year		= {2007}
}

###Article{	  quaini-quarteroni-07,
  Author	= {Quaini, A. and Quarteroni, A.},
  Journal	= {Math. Models Methods Appl. Sci.},
  Number	= {6},
  Pages		= {957--983},
  Title		= {A semi-implicit approach for fluid-structure interaction
		  based on an algebraic fractional step method},
  Volume	= {17},
  Year		= {2007}
}

@InCollection{	  quartapelle-muzzio-88,
  Author	= {Quartapelle, L. and Muzzio, A.},
  BookTitle	= {Computational Fluid Dynamics},
  Editor	= {de Vahl Davis, G. and Fletcher, C.},
  Pages		= {609-619},
  Publisher	= {{Elsevier Science Publishers, (North-Holland)}},
  Title		= {Decoupled solution of a vector {Poisson} equations with
		  boundary condition coupling},
  Year		= {1988}
}

###InCollection{  quartapelle-muzzio-88,
  Author	= {Quartapelle, L. and Muzzio, A.},
  BookTitle	= {Computational Fluid Dynamics},
  Editor	= {de Vahl Davis, G. and Fletcher, C.},
  Pages		= {609-619},
  Publisher	= {{Elsevier Science Publishers, (North-Holland)}},
  Title		= {Decoupled solution of a vector {Poisson} equations with
		  boundary condition coupling},
  Year		= {1988}
}

@Article{	  quarteroni-saleri-veneziani-00,
  Author	= {Quarteroni, A. and Saleri, F. and Veneziani, A.},
  Journal	= {Comp. Methods in Appl. Mech. Engng.},
  Number	= {1-3},
  Pages		= {505-526},
  Title		= {Factorization methods for the numerical approximation of
		  the {Navier-Stokes} equations},
  Volume	= {188},
  Year		= {2000}
}

###Article{	  quarteroni-saleri-veneziani-00,
  Author	= {Quarteroni, A. and Saleri, F. and Veneziani, A.},
  Journal	= {Comp. Methods in Appl. Mech. Engng.},
  Number	= {1-3},
  Pages		= {505-526},
  Title		= {Factorization methods for the numerical approximation of
		  the {Navier-Stokes} equations},
  Volume	= {188},
  Year		= {2000}
}

@Article{	  quarteroni-saleri-veneziani-99,
  Author	= {Quarteroni, A. and Saleri, F. and Veneziani, A.},
  Journal	= { J. Math. Pures Appl.},
  Number	= {5},
  Pages		= {473-503},
  Title		= {Analysis of the {Yosida} method for the incompressible
		  {Navier-Stokes} equations},
  Volume	= {78},
  Year		= {1999}
}

###Article{	  quarteroni-saleri-veneziani-99,
  Author	= {Quarteroni, A. and Saleri, F. and Veneziani, A.},
  Journal	= { J. Math. Pures Appl.},
  Number	= {5},
  Pages		= {473-503},
  Title		= {Analysis of the {Yosida} method for the incompressible
		  {Navier-Stokes} equations},
  Volume	= {78},
  Year		= {1999}
}

@Article{	  quarteroni-tuveri-veneziani-00,
  Annote	= {hemodynamics},
  Author	= {Quarteroni, A. and Tuveri, M. and Veneziani, A.},
  code		= {hemo},
  Journal	= {Comp. Vis. Science},
  Pages		= {163-197},
  Title		= {Computational {V}ascular {F}luid {D}ynamics: {P}roblems,
		  {M}odels and {M}ethods},
  Volume	= {2},
  Year		= {2000}
}

###Article{	  quarteroni-tuveri-veneziani-00,
  Annote	= {hemodynamics},
  Author	= {Quarteroni, A. and Tuveri, M. and Veneziani, A.},
  code		= {hemo},
  Journal	= {Comp. Vis. Science},
  Pages		= {163-197},
  Title		= {Computational {V}ascular {F}luid {D}ynamics: {P}roblems,
		  {M}odels and {M}ethods},
  Volume	= {2},
  Year		= {2000}
}

@Book{		  quarteroni-valli-97,
  Author	= {Quarteroni, A. and Valli, A.},
  Publisher	= {Springer},
  Title		= {Numerical Approximation of Partial Differential
		  equations},
  Year		= {1997}
}

###Book{	  quarteroni-valli-97,
  Author	= {Quarteroni, A. and Valli, A.},
  Publisher	= {Springer},
  Title		= {Numerical Approximation of Partial Differential
		  equations},
  Year		= {1997}
}

@Book{		  quarteroni-valli-99,
  Author	= {Quarteroni, A. and Valli, A.},
  Note		= {Oxford Science Publications},
  Publisher	= {The Clarendon Press Oxford University Press},
  Series	= {Numerical Mathematics and Scientific Computation},
  Title		= {Domain decomposition methods for partial differential
		  equations},
  Year		= {1999}
}

###Book{	  quarteroni-valli-99,
  Author	= {Quarteroni, A. and Valli, A.},
  Note		= {Oxford Science Publications},
  Publisher	= {The Clarendon Press Oxford University Press},
  Series	= {Numerical Mathematics and Scientific Computation},
  Title		= {Domain decomposition methods for partial differential
		  equations},
  Year		= {1999}
}

@Article{	  quarteroni-veneziani-zunino,
  Author	= {Quarteroni, A. and Veneziani, A. and Zunino, P.},
  Journal	= {SIAM-JSSC},
  Note		= {(submitted)},
  Title		= {Analysis of a Domain Decomposition Method for Blood Solute
		  Dynamics},
  Year		= {2000}
}

###Article{	  quarteroni-veneziani-zunino,
  Author	= {Quarteroni, A. and Veneziani, A. and Zunino, P.},
  Journal	= {SIAM-JSSC},
  Note		= {(submitted)},
  Title		= {Analysis of a Domain Decomposition Method for Blood Solute
		  Dynamics},
  Year		= {2000}
}

@Article{	  quarteroni_manzoni_vergara_2017,
  Title		= {The cardiovascular system: Mathematical modelling,
		  numerical algorithms and clinical applications},
  Volume	= {26},
  DOI		= {10.1017/S0962492917000046},
  Journal	= {Acta Numerica},
  Publisher	= {Cambridge University Press},
  Author	= {Quarteroni, A. and Manzoni, A. and Vergara, C.},
  Year		= {2017},
  Pages		= {365?590}
}

@InProceedings{	  raback-ruokalainen-lyly-jarvinen-01,
  Author	= {R\.aback, P. and Ruokolainen, J. and Lyly, M. and
		  J{\"a}rvinen, E.},
  BookTitle	= {ECCOMAS Computational Fluid Dynamics Conference, Swansea,
		  UK},
  Title		= {Fluid-structure interaction boundary conditions by
		  artificial compressibility},
  Year		= {2001}
}

###InProceedings{ raback-ruokalainen-lyly-jarvinen-01,
  Author	= {R\.aback, P. and Ruokolainen, J. and Lyly, M. and
		  J{\"a}rvinen, E.},
  BookTitle	= {ECCOMAS Computational Fluid Dynamics Conference, Swansea,
		  UK},
  Title		= {Fluid-structure interaction boundary conditions by
		  artificial compressibility},
  Year		= {2001}
}

@Article{	  rabby_pulsatile_2013,
  langid	= {english},
  Title		= {Pulsatile {{Non}}-{{Newtonian Blood Flow}} through a
		  {{Model}} of {{Arterial Stenosis}}},
  Volume	= {56},
  ISSN		= {18777058},
  URL		= {https://linkinghub.elsevier.com/retrieve/pii/S1877705813004657},
  DOI		= {10.1016/j.proeng.2013.03.111},
  JournalTitle	= {Procedia Engineering},
  URLDate	= {2019-02-13},
  Year		= {2013},
  Pages		= {225-231},
  Author	= {Rabby, Mir Golam and Razzak, Abdur and Molla, Md. Mamun}
}

@Article{	  rajagopalan-tien-76,
  Author	= {Rajagopalan, R. and Tien, C.},
  code		= {por26},
  Journal	= {AIChE J.},
  Number	= {3},
  Pages		= {523-533},
  Title		= { Trajectory analysis of deep-bed filtration with the
		  sphere-in-cell porous media model},
  Volume	= {22},
  Year		= {1976}
}

###Article{	  rajagopalan-tien-76,
  Author	= {Rajagopalan, R. and Tien, C.},
  code		= {por26},
  Journal	= {AIChE J.},
  Number	= {3},
  Pages		= {523-533},
  Title		= { Trajectory analysis of deep-bed filtration with the
		  sphere-in-cell porous media model},
  Volume	= {22},
  Year		= {1976}
}

@InCollection{	  rannacher1992chorin,
  Title		= {On Chorin's projection method for the incompressible
		  Navier-Stokes equations},
  Author	= {Rannacher, Rolf},
  BookTitle	= {The Navier-Stokes equations IIâtheory and numerical
		  methods},
  Pages		= {167--183},
  Year		= {1992},
  Publisher	= {Springer}
}

@Article{	  rannacher2001optimal,
  Title		= {An optimal control approach to error estimation and mesh
		  adaptation in finite element methods},
  Author	= {Rannacher, Rolf and Becker, R},
  Journal	= {Acta Numerica},
  Volume	= {10},
  Number	= {1},
  Pages		= {102},
  Year		= {2001}
}

@Article{	  rannacher383adaptive,
  Title		= {Adaptive finite element methods in flow computations},
  Author	= {Rannacher, Rolf},
  Journal	= {Recent Advances in Adaptive Computation. Contemporary
		  Mathematics},
  Volume	= {383},
  Pages		= {183--176}
}

@Article{	  rappaz-touzani-91,
  Author	= {Rappaz, J. and Touzani, R.},
  Journal	= {Eur. Jour. Mech., B/Fluids},
  Number	= {5},
  Pages		= {451-453},
  Title		= {Modelling of a two-dimensional magnetohydrodynamic
		  problem},
  Volume	= {10},
  Year		= {1991}
}

###Article{	  rappaz-touzani-91,
  Author	= {Rappaz, J. and Touzani, R.},
  Journal	= {Eur. Jour. Mech., B/Fluids},
  Number	= {5},
  Pages		= {451-453},
  Title		= {Modelling of a two-dimensional magnetohydrodynamic
		  problem},
  Volume	= {10},
  Year		= {1991}
}

@Article{	  rappaz-touzani-91b,
  Annote	= {mhd, existence},
  Author	= {Rappaz, J. and Touzani, R.},
  code		= {mhd11},
  Journal	= {Mod{\'e}lisation math{\'e}matique et Analyse num{\'e}rique},
  Number	= {2},
  Pages		= {347-364},
  Title		= {On a two-dimensional magnetohydrodynamic problem. {I)}
		  Modelling and analysis},
  Volume	= {26},
  Year		= {1991}
}

###Article{	  rappaz-touzani-91b,
  Annote	= {mhd, existence},
  Author	= {Rappaz, J. and Touzani, R.},
  code		= {mhd11},
  Journal	= {Mod{\'e}lisation math{\'e}matique et Analyse num{\'e}rique},
  Number	= {2},
  Pages		= {347-364},
  Title		= {On a two-dimensional magnetohydrodynamic problem. {I)}
		  Modelling and analysis},
  Volume	= {26},
  Year		= {1991}
}

@Article{	  rappaz-touzani-95,
  Annote	= {mhd, finite element},
  Author	= {Rappaz, J. and Touzani, R.},
  code		= {mhd12},
  Journal	= {Mod{\'e}lisation math{\'e}matique et Analyse num{\'e}rique},
  Number	= {2},
  Pages		= {215-235},
  Title		= {On a two-dimensional magnetohydrodynamic problem. {II)}
		  Numerical analysis},
  Volume	= {30},
  Year		= {1996}
}

###Article{	  rappaz-touzani-95,
  Annote	= {mhd, finite element},
  Author	= {Rappaz, J. and Touzani, R.},
  code		= {mhd12},
  Journal	= {Mod{\'e}lisation math{\'e}matique et Analyse num{\'e}rique},
  Number	= {2},
  Pages		= {215-235},
  Title		= {On a two-dimensional magnetohydrodynamic problem. {II)}
		  Numerical analysis},
  Volume	= {30},
  Year		= {1996}
}

@Article{	  rasmussen-hassager-saasen-98,
  Author	= {Rasmussen, H.K. and Hassager, O. and Saasen, A.},
  code		= {mob7},
  Journal	= {Int. Jour. Num. Meth. Fluids},
  Pages		= {859-881},
  Title		= {Viscous flow with large fluid-fluid interface
		  displacement},
  Volume	= {28},
  Year		= {1998}
}

###Article{	  rasmussen-hassager-saasen-98,
  Author	= {Rasmussen, H.K. and Hassager, O. and Saasen, A.},
  code		= {mob7},
  Journal	= {Int. Jour. Num. Meth. Fluids},
  Pages		= {859-881},
  Title		= {Viscous flow with large fluid-fluid interface
		  displacement},
  Volume	= {28},
  Year		= {1998}
}

@Article{	  rausch2011jmbbm,
  Title		= {Material model of lung parenchyma based on living
		  precision-cut lung slice testing },
  Author	= {S.M.K. Rausch and C. Martin and P.B. Bornemann and S.
		  Uhlig and W.A. Wall},
  Journal	= {Journal of the Mechanical Behavior of Biomedical Materials
		  },
  Year		= {2011},
  Number	= {4},
  Pages		= {583 - 592},
  Volume	= {4},
  Abstract	= {We describe a novel constitutive model of lung parenchyma,
		  which can be used for continuum mechanics based predictive
		  simulations. To develop this model, we experimentally
		  determined the nonlinear material behavior of rat lung
		  parenchyma. This was achieved via uni-axial tension tests
		  on living precision-cut rat lung slices. The resulting
		  force?displacement curves were then used as inputs for an
		  inverse analysis. The Levenberg?Marquardt algorithm was
		  utilized to optimize the material parameters of
		  combinations and recombinations of established
		  strain?energy density functions (SEFs). Comparing the
		  best-fits of the tested \{SEFs\} we found W p a r = 4.1 kPa
		  ( I Â¯ 1 ? 3 ) 2 + 20.7 kPa ( I Â¯ 1 ? 3 ) 3 + 4.1 kPa ( ?
		  2 ln J + J 2 ? 1 ) to be the optimal constitutive model.
		  This \{SEF\} consists of three summands: the first can be
		  interpreted as the contribution of the elastin fibers and
		  the ground substance, the second as the contribution of the
		  collagen fibers while the third controls the volumetric
		  change. The presented approach will help to model the
		  behavior of the pulmonary parenchyma and to quantify the
		  strains and stresses during ventilation. },
  DOI		= {http://dx.doi.org/10.1016/j.jmbbm.2011.01.006},
  File		= {rausch11.pdf:rausch11.pdf:PDF},
  ISSN		= {1751-6161},
  Keywords	= {Alveoli},
  timestamp	= {2015/09/23},
  URL		= {http://www.sciencedirect.com/science/article/pii/S1751616111000075}
}

@InCollection{	  raviart1977mixed,
  Title		= {A mixed finite element method for 2-nd order elliptic
		  problems},
  Author	= {Raviart, Pierre-Arnaud and Thomas, Jean-Marie},
  BookTitle	= {Mathematical aspects of finite element methods},
  Pages		= {292--315},
  Year		= {1977},
  Publisher	= {Springer}
}

@Article{	  raymond-10,
  Author	= {Raymond, Jean-Pierre},
  date-added	= {2012-02-27 13:47:31 +0000},
  date-modified	= {2012-02-27 13:52:18 +0000},
  DOI		= {10.1137/080744761},
  Journal	= {SIAM J. Control Optim.},
  Number	= {8},
  Pages		= {5398--5443},
  Title		= {Feedback stabilization of a fluid-structure model},
  Volume	= {48},
  Year		= {2010}
}

###Article{	  raymond-10,
  Author	= {Raymond, Jean-Pierre},
  date-added	= {2012-02-27 13:47:31 +0000},
  date-modified	= {2012-02-27 13:52:18 +0000},
  DOI		= {10.1137/080744761},
  Journal	= {SIAM J. Control Optim.},
  Number	= {8},
  Pages		= {5398--5443},
  Title		= {Feedback stabilization of a fluid-structure model},
  Volume	= {48},
  Year		= {2010},
  bdsk-url-1	= {http://dx.doi.org/10.1137/080744761}
}

@Book{		  ref,
  Author	= "Author(s)",
  Title		= "{Title}",
  Publisher	= "Eds.",
  Year		= "year"
}

###Article{	  ref,
  Author	= "Authors",
  Title		= "Title",
  Journal	= "journal",
  Volume	= "1",
  Pages		= "pp",
  Year		= "year"
}

###Book{	  ref,
  Author	= "Author(s)",
  Title		= "{Title}",
  Publisher	= "Eds.",
  Year		= "year"
}

###Article{	  ref,
  Author	= "Authors",
  Title		= "Title",
  Journal	= "journal",
  Volume	= "1",
  Pages		= "pp",
  Year		= "year"
}

@Article{	  rehmann-welty-harvey-99,
  Author	= {Rehmann, L.L.C. and Welty, C. and Harvey, R.W.},
  code		= {por20},
  Journal	= {Water resources research},
  Number	= {7},
  Pages		= {1987-2006},
  Title		= {Stochastic analysis of virus transport in aquifers},
  Volume	= {35},
  Year		= {1999}
}

###Article{	  rehmann-welty-harvey-99,
  Author	= {Rehmann, L.L.C. and Welty, C. and Harvey, R.W.},
  code		= {por20},
  Journal	= {Water resources research},
  Number	= {7},
  Pages		= {1987-2006},
  Title		= {Stochastic analysis of virus transport in aquifers},
  Volume	= {35},
  Year		= {1999}
}

@Article{	  rengier_noninvasive_2014,
  Title		= {Noninvasive Pressure Difference Mapping Derived from
		  {{4D}} Flow {{MRI}} in Patients with Unrepaired and
		  Repaired Aortic Coarctation},
  Volume	= {4},
  Number	= {2},
  JournalTitle	= {Cardiovascular diagnosis and therapy},
  Year		= {2014},
  Pages		= {97},
  Author	= {Rengier, Fabian and Delles, Michael and Eichhorn, Joachim
		  and Azad, Yoo-Jin and von Tengg-Kobligk, Hendrik and
		  Ley-Zaporozhan, Julia and Dillmann, RÃ¼diger and Kauczor,
		  Hans-Ulrich and Unterhinninghofen, Roland and Ley,
		  Sebastian},
  Options	= {useprefix=true}
}

@Article{	  rengier_noninvasive_2015,
  Title		= {Noninvasive {{4D}} Pressure Difference Mapping Derived
		  from {{4D}} Flow {{MRI}} in Patients with Repaired Aortic
		  Coarctation: Comparison with Young Healthy Volunteers},
  Volume	= {31},
  ShortTitle	= {Noninvasive {{4D}} Pressure Difference Mapping Derived
		  from {{4D}} Flow {{MRI}} in Patients with Repaired Aortic
		  Coarctation},
  Number	= {4},
  JournalTitle	= {The international journal of cardiovascular imaging},
  Year		= {2015},
  Pages		= {823--830},
  Author	= {Rengier, Fabian and Delles, Michael and Eichhorn, Joachim
		  and Azad, Yoo-Jin and von Tengg-Kobligk, Hendrik and
		  Ley-Zaporozhan, Julia and Dillmann, RÃ¼diger and Kauczor,
		  Hans-Ulrich and Unterhinninghofen, Roland and Ley,
		  Sebastian},
  Options	= {useprefix=true}
}

@Article{	  rengier_vitro_2011,
  Title		= {In Vitro Validation of Flow Measurements in an Aortic
		  Nitinol Stent Graft by Velocity-Encoded {{MRI}}},
  Author	= {Rengier, Fabian and Delles, Michael and Weber, Tim
		  Frederik and B{\"o}ckler, Dittmar and Ley, Sebastian and
		  Kauczor, Hans-Ulrich and {von Tengg-Kobligk}, Hendrik},
  Year		= {2011},
  Volume	= {80},
  Pages		= {163--167},
  Journal	= {European journal of radiology},
  Number	= {1}
}

@Article{	  reuben-shannon-90,
  Annote	= {blood, red cell, sedimentation, aggregation},
  Author	= { Reuben, A. J. and Shannon, A. G. },
  code		= {cel9},
  Journal	= {IMA J. Math. Appl. Med. Biol.},
  Number	= {3},
  Pages		= {145-156},
  Title		= {Some problems in the mathematical modelling of erythrocyte
		  sedimentation},
  Volume	= {7},
  Year		= {1990}
}

###Article{	  reuben-shannon-90,
  Annote	= {blood, red cell, sedimentation, aggregation},
  Author	= { Reuben, A. J. and Shannon, A. G. },
  code		= {cel9},
  Journal	= {IMA J. Math. Appl. Med. Biol.},
  Number	= {3},
  Pages		= {145-156},
  Title		= {Some problems in the mathematical modelling of erythrocyte
		  sedimentation},
  Volume	= {7},
  Year		= {1990}
}

@Article{	  reumann-reinerth-2004,
  Author	= {Reumann, M. and Reinerth, G. and Seemann, G. and Vahl,
		  C.F. and Hagl, S. and D{\"o}ssel, O.},
  Journal	= {International Congress Series},
  Pages		= {1102-1107},
  Title		= {Computer-aided electrode positioning in biventricular
		  pacing},
  Volume	= {1268},
  Year		= {2004}
}

###Article{	  reumann-reinerth-2004,
  Author	= {Reumann, M. and Reinerth, G. and Seemann, G. and Vahl,
		  C.F. and Hagl, S. and D{\"o}ssel, O.},
  Journal	= {International Congress Series},
  Pages		= {1102-1107},
  Title		= {Computer-aided electrode positioning in biventricular
		  pacing},
  Volume	= {1268},
  Year		= {2004}
}

###Article{	  reumann-reinerth-2004,
  Author	= {Reumann, M. and Reinerth, G. and Seemann, G. and Vahl,
		  C.F. and Hagl, S. and D{\"o}ssel, O.},
  Journal	= {International Congress Series},
  Pages		= {1102-1107},
  Title		= {Computer-aided electrode positioning in biventricular
		  pacing},
  Volume	= {1268},
  Year		= {2004}
}

###Article{	  reumann-reinerth-2004,
  Author	= {Reumann, M. and Reinerth, G. and Seemann, G. and Vahl,
		  C.F. and Hagl, S. and D{\"o}ssel, O.},
  Journal	= {International Congress Series},
  Pages		= {1102-1107},
  Title		= {Computer-aided electrode positioning in biventricular
		  pacing},
  Volume	= {1268},
  Year		= {2004}
}

@Article{	  rhee-lee-98,
  Author	= {Rhee, K. and Lee, S.M.},
  Journal	= {Annals of Biomedical Engineering},
  Title		= {Effects of radial wall motion and flow waveform on the
		  wall shear rate distribution in the divergent vascular
		  graft},
  Year		= {1998}
}

###Article{	  rhee-lee-98,
  Author	= {Rhee, K. and Lee, S.M.},
  Journal	= {Annals of Biomedical Engineering},
  Title		= {Effects of radial wall motion and flow waveform on the
		  wall shear rate distribution in the divergent vascular
		  graft},
  Year		= {1998}
}

@Article{	  rice2008approximate,
  Title		= {Approximate model of cooperative activation and
		  crossbridge cycling in cardiac muscle using ordinary
		  differential equations},
  Author	= {Rice, John Jeremy and Wang, Fei and Bers, Donald M and De
		  Tombe, Pieter P},
  Journal	= {Biophysical journal},
  Volume	= {95},
  Number	= {5},
  Pages		= {2368--2390},
  Year		= {2008},
  Publisher	= {Elsevier}
}

@Article{	  richter_cardiology_2006,
  langid	= {english},
  Title		= {Cardiology Is Flow},
  Volume	= {113},
  ISSN		= {1524-4539},
  DOI		= {10.1161/CIRCULATIONAHA.106.632687},
  Number	= {23},
  JournalTitle	= {Circulation},
  ShortJournal	= {Circulation},
  Year		= {2006-06-13},
  Pages		= {2679-2682},
  Author	= {Richter, Yoram and Edelman, Elazer R.},
  EPrintType	= {pmid},
  EPrint	= {16769924}
}

@Article{	  riesenkampff2014pressure,
  Title		= {Pressure fields by flow-sensitive, 4D, velocity-encoded
		  CMR in patients with aortic coarctation},
  Author	= {Riesenkampff, Eug{\'e}nie and Fernandes, Joao Filipe and
		  Meier, Sebastian and Goubergrits, Leonid and Kropf,
		  Siegfried and Schubert, Stephan and Berger, Felix and
		  Henneumuth, Anja and Kuehne, Titus},
  Journal	= {JACC: Cardiovascular Imaging},
  Volume	= {7},
  Number	= {9},
  Pages		= {920--926},
  Year		= {2014},
  Publisher	= {Journal of the American College of Cardiology}
}

@Article{	  riesenkampff_pressure_2014,
  Title		= {Pressure Fields by Flow-Sensitive, {{4D}},
		  Velocity-Encoded {{CMR}} in Patients with Aortic
		  Coarctation},
  Volume	= {7},
  Number	= {9},
  JournalTitle	= {JACC: Cardiovascular Imaging},
  Year		= {2014},
  Pages		= {920--926},
  Author	= {Riesenkampff, EugÃ©nie and Fernandes, Joao Filipe and
		  Meier, Sebastian and Goubergrits, Leonid and Kropf,
		  Siegfried and Schubert, Stephan and Berger, Felix and
		  Hennemuth, Anja and Kuehne, Titus}
}

@Article{	  rijcken1999abe,
  Title		= {Optimization of Cardiac Fiber Orientation for Homogeneous
		  Fiber Strain During Ejection},
  Author	= {Rijcken, J. and Bovendeerd, P.H.M. and Schoofs, A.J.G. and
		  van Campen, D.H. and Arts, T.},
  Journal	= {Annals of Biomedical Engineering},
  Year		= {1999},
  Number	= {3},
  Pages		= {289-297},
  Volume	= {27},
  DOI		= {10.1114/1.147},
  File		= {rijcken99.pdf:rijcken99.pdf:PDF},
  ISSN		= {0090-6964},
  Keywords	= {Left ventricle; Finite-element analysis},
  Language	= {English},
  Publisher	= {Kluwer Academic Publishers-Plenum Publishers},
  timestamp	= {2015/09/22},
  URL		= {http://dx.doi.org/10.1114/1.147}
}

@Article{	  riley-et-al-92,
  Author	= {Riley, W.A. and Barnes, R.W. and Evans, G.W. and Burke,
		  G.L.},
  Journal	= {Stroke},
  Pages		= {952--956},
  Title		= {Ultrasonic measurement of the elastic modulus of the
		  common carotid artery. {T}he atherosclerosis risk in
		  communities study},
  Volume	= {23},
  Year		= {1992}
}

###Article{	  riley-et-al-92,
  Author	= {Riley, W.A. and Barnes, R.W. and Evans, G.W. and Burke,
		  G.L.},
  Journal	= {Stroke},
  Pages		= {952--956},
  Title		= {Ultrasonic measurement of the elastic modulus of the
		  common carotid artery. {T}he atherosclerosis risk in
		  communities study},
  Volume	= {23},
  Year		= {1992}
}

@Article{	  rinaudo2015computational,
  Title		= {Computational fluid dynamics simulation to evaluate aortic
		  coarctation gradient with contrast-enhanced CT},
  Author	= {Rinaudo, Antonino and D'Ancona, Giuseppe and Baglini,
		  Roberto and Amaducci, Andrea and Follis, Fabrizio and
		  Pilato, Michele and Pasta, Salvatore},
  Journal	= {Computer methods in biomechanics and biomedical
		  engineering},
  Volume	= {18},
  Number	= {10},
  Pages		= {1066--1071},
  Year		= {2015},
  Publisher	= {Taylor \& Francis}
}

@InBook{	  roberts-thomas-91,
  Author	= {Roberts, J. E. and Thomas, J.-M.},
  Chapter	= {Mixed and hybrid methods},
  Pages		= {523--639},
  Publisher	= {North-Holland},
  Title		= {Handbook of numerical analysis},
  Volume	= {Vol. II},
  Year		= {1991}
}

###InBook{	  roberts-thomas-91,
  Author	= {Roberts, J. E. and Thomas, J.-M.},
  Chapter	= {Mixed and hybrid methods},
  Pages		= {523--639},
  Publisher	= {North-Holland},
  Title		= {Handbook of numerical analysis},
  Volume	= {Vol. II},
  Year		= {1991}
}

@Article{	  roberts2005frequency,
  Title		= {Frequency by decades of unicuspid, bicuspid, and tricuspid
		  aortic valves in adults having isolated aortic valve
		  replacement for aortic stenosis, with or without associated
		  aortic regurgitation},
  Author	= {Roberts, William C and Ko, Jong M},
  Journal	= {Circulation},
  Volume	= {111},
  Number	= {7},
  Pages		= {920--925},
  Year		= {2005},
  Publisher	= {Am Heart Assoc}
}

@Article{	  rodriguez1994biomech,
  Title		= {Stress-dependent finite growth in soft elastic tissues },
  Author	= {Edward K. Rodriguez and Anne Hoger and Andrew D.
		  McCulloch},
  Journal	= {Journal of Biomechanics },
  Year		= {1994},
  Number	= {4},
  Pages		= {455 - 467},
  Volume	= {27},
  Abstract	= {Growth and remodeling in tissues may be modulated by
		  mechanical factors such as stress. For example, in cardiac
		  hypertrophy, alterations in wall stress arising from
		  changes in mechanical loading lead to cardiac growth and
		  remodeling. A general continuum formulation for finite
		  volumetric growth in soft elastic tissues is therefore
		  proposed. The shape change of an unloaded tissue during
		  growth is described by a mapping analogous to the
		  deformation gradient tensor. This mapping is decomposed
		  into a transformation of the local zero-stress reference
		  state and an accompanying elastic deformation that ensures
		  the compatibility of the total growth deformation. Residual
		  stress arises from this elastic deformation. Hence, a
		  complete kinematic formulation for growth in general
		  requires a knowledge of the constitutive law for stress in
		  the tissue. Since growth may in turn be affected by stress
		  in the tissue, a general form for the stress-dependent
		  growth law is proposed as a relation between the symmetric
		  growth-rate tensor and the stress tensor. With a
		  thick-walled hollow cylinder of incompressible, isotropic
		  hyperelastic material as an example, the mechanics of left
		  ventricular hypertrophy are investigated. The results show
		  that transmurally uniform pure circumferential growth,
		  which may be similar to eccentric ventricular hypertrophy,
		  changes the state of residual stress in the heart wall. A
		  model of axially loaded bone is used to test a simple
		  stress-dependent growth law in which growth rate depends on
		  the difference between the stress due to loading and a
		  predetermined growth equilibrium stress. },
  DOI		= {http://dx.doi.org/10.1016/0021-9290(94)90021-3},
  File		= {rodriguez94.pdf:rodriguez94.pdf:PDF},
  ISSN		= {0021-9290},
  timestamp	= {2015/09/21},
  URL		= {http://www.sciencedirect.com/science/article/pii/0021929094900213}
}

@Article{	  roe-81,
  Author	= {P. L. Roe},
  Journal	= {J.C.P.},
  Pages		= {357},
  Title		= {Approximate {R}iemann solvers, parameter vectors and
		  difference schemes},
  Volume	= {43},
  Year		= {1981}
}

###Article{	  roe-81,
  Author	= {P. L. Roe},
  Journal	= {J.C.P.},
  Pages		= {357},
  Title		= {Approximate {R}iemann solvers, parameter vectors and
		  difference schemes},
  Volume	= {43},
  Year		= {1981}
}

@Article{	  romarowski2018patient,
  Title		= {Patient-specific CFD modelling in the thoracic aorta with
		  PC-MRI--based boundary conditions: A least-square
		  three-element Windkessel approach},
  Author	= {Romarowski, Rodrigo M and Lefieux, Adrien and Morganti,
		  Simone and Veneziani, Alessandro and Auricchio,
		  Ferdinando},
  Journal	= {International journal for numerical methods in biomedical
		  engineering},
  Pages		= {e3134},
  Year		= {2018},
  Publisher	= {Wiley Online Library}
}

@Article{	  romarowski_patient-specific_2018,
  langid	= {english},
  Title		= {Patient-Specific {{CFD}} Modelling in the Thoracic Aorta
		  with {{PC}}-{{MRI}}âBased Boundary Conditions: {{A}}
		  Least-Square Three-Element {{Windkessel}} Approach},
  Volume	= {34},
  ISSN		= {2040-7947},
  URL		= {https://onlinelibrary.wiley.com/doi/abs/10.1002/cnm.3134},
  DOI		= {10.1002/cnm.3134},
  ShortTitle	= {Patient-Specific {{CFD}} Modelling in the Thoracic Aorta
		  with {{PC}}-{{MRI}}âBased Boundary Conditions},
  Abstract	= {The increasing use of computational fluid dynamics for
		  simulating blood flow in clinics demands the identification
		  of appropriate patient-specific boundary conditions for the
		  customization of the mathematical models. These conditions
		  should ideally be retrieved from measurements. However,
		  finite resolution of devices as well as other
		  practical/ethical reasons prevent the construction of
		  complete data sets necessary to make the mathematical
		  problems well posed. Available data need to be completed by
		  modelling assumptions, whose impact on the final solution
		  has to be carefully addressed. Focusing on aortic vascular
		  districts and related pathologies, we present here a method
		  for efficiently and robustly prescribing phase contrast
		  MRIâbased patient-specific data as boundary conditions at
		  the domain of interest. In particular, for the outlets, the
		  basic idea is to obtain pressure conditions from an
		  appropriate elaboration of available flow rates on the
		  basis of a 3D/0D dimensionally heterogeneous modelling. The
		  key point is that the parameters are obtained by a
		  constrained optimization procedure. The rationale is that
		  pressure conditions have a reduced impact on the numerical
		  solution compared with velocity conditions, yielding a
		  simulation framework less exposed to noise and
		  inconsistency of the data, as well as to the arbitrariness
		  of the underlying modelling assumptions. Numerical results
		  confirm the reliability of the approach in comparison with
		  other patient-specific approaches adopted in the
		  literature.},
  Number	= {11},
  JournalTitle	= {International Journal for Numerical Methods in Biomedical
		  Engineering},
  URLDate	= {2019-02-28},
  Year		= {2018},
  Pages		= {e3134},
  Author	= {Romarowski, Rodrigo M. and Lefieux, Adrien and Morganti,
		  Simone and Veneziani, Alessandro and Auricchio,
		  Ferdinando}
}

@Article{	  romerio-secretan-86,
  Annote	= {mhd, aluminium},
  Author	= {Romerio, M. V. and Secr{\'e}tan, M.-A.},
  code		= {mhd25},
  Journal	= {Computer Physics Reports},
  Pages		= {327-360},
  Title		= {Magnetohydrodynamics equilibrium in aluminium electrolytic
		  cells},
  Volume	= {3},
  Year		= {1986}
}

###Article{	  romerio-secretan-86,
  Annote	= {mhd, aluminium},
  Author	= {Romerio, M. V. and Secr{\'e}tan, M.-A.},
  code		= {mhd25},
  Journal	= {Computer Physics Reports},
  Pages		= {327-360},
  Title		= {Magnetohydrodynamics equilibrium in aluminium electrolytic
		  cells},
  Volume	= {3},
  Year		= {1986}
}

@Article{	  rossi2013parallel,
  Title		= {Parallel adaptive mesh refinement for incompressible flow
		  problems},
  Author	= {Rossi, Riccardo and Cotela, J and Lafontaine, Nelson
		  Maireni and Dadvand, Pooyan and Idelsohn, SR},
  Journal	= {Computers \& Fluids},
  Volume	= {80},
  Pages		= {342--355},
  Year		= {2013},
  Publisher	= {Elsevier}
}

@Article{	  rozza_reduction_2012,
  langid	= {english},
  Title		= {Reduction Strategies for {{PDE}}-Constrained Oprimization
		  Problems in {{Haemodynamics}}},
  URL		= {http://preprints.sissa.it/xmlui/handle/1963/6338},
  Abstract	= {Solving optimal control problems for many different
		  scenarios obtained by varying a set of parameters in the
		  state system is a computationally extensive task. In this
		  paper we present a new reduced framework for the
		  formulation, the analysis and the numerical solution of
		  parametrized PDE-constrained optimization problems. This
		  framework is based on a suitable saddle-point formulation
		  of the optimal control problem and exploits the reduced
		  basis method for the rapid and reliable solution of
		  parametrized PDEs, leading to a relevant computational
		  reduction with respect to traditional discretization
		  techniques such as the finite element method. This allows a
		  very efficient evaluation of state solutions and cost
		  functionals, leading to an effective solution of repeated
		  optimal control problems, even on domains of variable
		  shape, for which a further (geometrical) reduction is
		  pursued, relying on flexible shape parametrization
		  techniques. This setting is applied to the solution of two
		  problems arising from haemodynamics, dealing with both data
		  reconstruction and data assimilation over domains of
		  variable shape, which can be recast in a common
		  PDE-constrained optimization formulation.},
  URLDate	= {2019-02-20},
  Year		= {2012},
  Author	= {Rozza, Gianluigi and Manzoni, Andrea and Negri, Federico}
}

@Article{	  rugonyi-bathe-01,
  Author	= {Rugonyi, S. and Bathe, K.J.},
  code		= {fsi16},
  Journal	= {CMES - Comp. Modeling Eng. Sci.},
  Number	= {2},
  Pages		= {195--212},
  Title		= {On finite element analysis of fluid flows coupled with
		  structural interaction},
  Volume	= {2},
  Year		= {2001}
}

###Article{	  rugonyi-bathe-01,
  Author	= {Rugonyi, S. and Bathe, K.J.},
  code		= {fsi16},
  Journal	= {CMES - Comp. Modeling Eng. Sci.},
  Number	= {2},
  Pages		= {195--212},
  Title		= {On finite element analysis of fluid flows coupled with
		  structural interaction},
  Volume	= {2},
  Year		= {2001}
}

@Article{	  rutz2008mrm,
  Title		= {Accelerated whole-heart 3D CSPAMM for myocardial motion
		  quantification.},
  Author	= {Rutz, Andrea K. and Ryf, Salome and Plein, Sven and
		  Boesiger, Peter and Kozerke, Sebastian},
  Journal	= {Magn Reson Med},
  Year		= {2008},
  Month		= {Apr},
  Number	= {4},
  Pages		= {755--763},
  Volume	= {59},
  Abstract	= {Myocardial tissue tagging using complementary spatial
		  modulation of magnetization (CSPAMM) allows detailed
		  assessment of myocardial motion. To capture the complex 3D
		  cardiac motion pattern, multiple 2D tagged slices are
		  usually acquired in different orientations. These
		  approaches are prone to slice misregistration and
		  associated with long acquisition times. In this work, a
		  fast method for acquiring 3D CSPAMM data is proposed that
		  allows measuring deformation of the whole heart in three
		  breath-holds of 18 heartbeats duration each. Three
		  acquisitions are sequentially performed with line tag
		  preparation in each orthogonal direction. Measurement
		  acceleration is achieved by applying localized tagging
		  preparation and a hybrid multishot, segmented echo-planar
		  imaging sequence. Five healthy volunteers and five patients
		  with myocardial infarction were measured. Midwall contours
		  were tracked throughout the cardiac cycle with an enhanced
		  variant of the harmonic phase (HARP) technique.
		  Circumferential shortening at end-systole ranged from
		  14.1\% (base) to 20.1\% (apex) in healthy subjects.
		  Hypokinetic regions in patients corresponded well with
		  regions exhibiting hyperenhancement after contrast
		  injection. Time to maximum circumferential shortening
		  varied more significantly over the left ventricle in
		  patients than in volunteers (P<0.01). The proposed
		  measurement scheme was well tolerated by patients and holds
		  considerable potential to investigate cardiac mechanics in
		  various diseases.},
  DOI		= {10.1002/mrm.21363},
  Institution	= {Institute for Biomedical Engineering, University and ETH
		  Zurich, Switzerland. rutz@biomed.ee.ethz.ch},
  Keywords	= {Adult; Algorithms; Artificial Intelligence; Female; Heart,
		  physiopathology; Humans; Image Enhancement, methods; Image
		  Interpretation, Computer-Assisted, methods; Imaging,
		  Three-Dimensional, methods; Magnetic Resonance Imaging,
		  methods; Male; Movement; Myocardial Infarction,
		  pathology/physiopathology; Myocardium, pathology; Pattern
		  Recognition, Automated, methods; Reproducibility of
		  Results; Sensitivity and Specificity; Subtraction
		  Technique},
  Language	= {eng},
  medline-pst	= {ppublish},
  owner		= {stoeckc},
  pmid		= {18383307},
  timestamp	= {2015.07.24},
  URL		= {http://dx.doi.org/10.1002/mrm.21363}
}

@Article{	  rutz2009ehj,
  Title		= {Left ventricular dyssynchrony in patients with left bundle
		  branch block and patients after myocardial infarction:
		  integration of mechanics and viability by cardiac magnetic
		  resonance.},
  Author	= {Rutz, Andrea K. and Manka, Robert and Kozerke, Sebastian
		  and Roas, Susanne and Boesiger, Peter and Schwitter,
		  Juerg},
  Journal	= {Eur Heart J},
  Year		= {2009},
  Month		= {Sep},
  Number	= {17},
  Pages		= {2117--2127},
  Volume	= {30},
  Abstract	= {To quantify left ventricular (LV) dyssynchrony in patients
		  with left bundle branch block (LBBB) and in patients after
		  myocardial infarction (MI) applying an accelerated
		  three-dimensional (3D) tagging cardiac magnetic resonance
		  (CMR) technique, and to combine dyssynchrony information
		  with viability data obtained by late gadolinium enhancement
		  (LGE) CMR.Thirty-two patients (59 +/- 11 years) after first
		  MI (Pats(MI)), 10 patients (63 +/- 10 years) with LBBB
		  (ejection fraction < 40\%; Pats(LBBB<40)), 13 patients (63
		  +/- 11) with LBBB (ejection fraction >or= 40\%; Pats(LBBB
		  >or=40 )), and 15 healthy controls (53 +/- 10 years)
		  underwent 3D tagging CMR and LGE imaging at 1.5 T. As a
		  measure of mechanical LV dyssynchrony, the standard
		  deviation of T(max) over the LV, the circumferential
		  uniformity ratio estimate (CURE) index, and a
		  segmental-based circumferential systolic dyssynchrony index
		  (SDI) were calculated. All three parameters detected
		  significantly increased circumferential dyssynchrony in
		  patients compared with controls. The CURE and SDI showed a
		  good correlation (r = 0.93, P < 0.0001) and detected most
		  severe dyssynchrony in Pats(LBBB<40) (P < 0.001 vs.
		  controls, P < 0.005 vs. Pats(MI)). Systolic dyssynchrony
		  index additionally allowed integration of localized
		  viability information to yield SDI(viable) which was
		  highest in Pats(LBBB<40).Dyssynchrony patterns in the LV
		  can be quantified globally and regionally by 3D tagging
		  CMR. Combination of viability and dyssynchrony information
		  allows for a comprehensive dyssynchrony quantification in
		  patients with LBBB or post-MI. Future studies are required
		  to test the value of the method to predict responsiveness
		  to resynchronization.},
  DOI		= {10.1093/eurheartj/ehp212},
  Institution	= {Institute for Biomedical Engineering, University and ETH
		  Zurich, Zurich, Switzerland.},
  Keywords	= {Adult; Aged; Bundle-Branch Block,
		  etiology/pathology/physiopathology; Case-Control Studies;
		  Female; Humans; Imaging, Three-Dimensional; Magnetic
		  Resonance Angiography; Male; Middle Aged; Myocardial
		  Infarction, complications/pathology/physiopathology;
		  Observer Variation; Ventricular Dysfunction, Left,
		  etiology/pathology/physiopathology},
  Language	= {eng},
  medline-pst	= {ppublish},
  owner		= {stoeckc},
  pii		= {ehp212},
  pmid		= {19477875},
  timestamp	= {2015.07.24},
  URL		= {http://dx.doi.org/10.1093/eurheartj/ehp212}
}

@Article{	  ryan-elimelech-96,
  Author	= {Ryan, J.N. and Elimelech, M.},
  code		= {por18},
  Journal	= {Colloid and Surfaces, A: Physicochemical and Engineering
		  aspecsts},
  Pages		= {1-56},
  Title		= {Colloid mobilization and transport in groundwater},
  Volume	= {107},
  Year		= {1996}
}

###Article{	  ryan-elimelech-96,
  Author	= {Ryan, J.N. and Elimelech, M.},
  code		= {por18},
  Journal	= {Colloid and Surfaces, A: Physicochemical and Engineering
		  aspecsts},
  Pages		= {1-56},
  Title		= {Colloid mobilization and transport in groundwater},
  Volume	= {107},
  Year		= {1996}
}

@Article{	  ryan1996jacc,
  Title		= {ACC/AHA guidelines for the management of patients with
		  acute myocardial infarctionA report of the American College
		  of cardiology/American Heart Association Task Force on
		  Practice Guidelines (Committee on Management of Acute
		  Myocardial Infarction)},
  Author	= {Ryan, Thomas J. and Anderson, Jeffrey L. and Antman,
		  Elliott M. and Braniff, Blaine A. and Brooks, Neil H. and
		  Califf, Robert M. and Hillis, L. David and Hiratzka, Loren
		  F. and Rapaport, Elliott and Riegel, Barbara J. and
		  Russell, Richard O. and Smith, III ,Earl E. and Weaver, W.
		  Douglas and Ritchie, James L. and Cheitlin, Melvin D. and
		  Eagle, Kim A. and Gardner, Timothy J. and Garson, Jr.
		  ,Arthur and Gibbons, Raymond J. and Lewis, Richard P. and
		  O'Rourke, Robert A.},
  Journal	= {Journal of the American College of Cardiology},
  Year		= {1996},
  Number	= {5},
  Pages		= {1328-1419},
  Volume	= {28},
  DOI		= {10.1016/S0735-1097(96)00392-0},
  EPrint	= {/data/Journals/JAC/22864/03920.pdf},
  File		= {ryan96.pdf:ryan96.pdf:PDF},
  timestamp	= {2015/09/13},
  URL		= { + http://dx.doi.org/10.1016/S0735-1097(96)00392-0}
}

@Article{	  saad-schultz-86,
  Author	= {Saad, Y. and Schultz, M. H.},
  fjournal	= {Society for Industrial and Applied Mathematics. Journal on
		  Scientific and Statistical Computing},
  Journal	= {SIAM J. Sci. Statist. Comput.},
  Number	= {3},
  Pages		= {856--869},
  Title		= {G{MRES}: a generalized minimal residual algorithm for
		  solving nonsymmetric linear systems},
  Volume	= {7},
  Year		= {1986}
}

###Article{	  saad-schultz-86,
  Author	= {Saad, Y. and Schultz, M. H.},
  fjournal	= {Society for Industrial and Applied Mathematics. Journal on
		  Scientific and Statistical Computing},
  Journal	= {SIAM J. Sci. Statist. Comput.},
  Number	= {3},
  Pages		= {856--869},
  Title		= {G{MRES}: a generalized minimal residual algorithm for
		  solving nonsymmetric linear systems},
  Volume	= {7},
  Year		= {1986}
}

@Book{		  saad_iterative_2003,
  Location	= {{Philadelphia}},
  Title		= {Iterative Methods for Sparse Linear Systems},
  Edition	= {2nd ed},
  ISBN		= {978-0-89871-534-7},
  PageTotal	= {528},
  Publisher	= {{SIAM}},
  Date		= {2003},
  Author	= {Saad, Y.}
}

@Article{	  sachs1994mrm,
  Author	= {Sachs, Todd S. and Meyer, Craig H. and Hu, Bob S. and
		  Kohli, Jim and Nishimura, Dwight G. and Macovski, Albert},
  Title		= {Real-time motion detection in spiral MRI using
		  navigators},
  Journal	= {Magnetic Resonance in Medicine},
  Volume	= {32},
  Number	= {5},
  Publisher	= {Wiley Subscription Services, Inc., A Wiley Company},
  ISSN		= {1522-2594},
  Pages		= {639--645},
  Keywords	= {Motion artifacts, navigators, MRI},
  Year		= {1994}
}

@Article{	  saint-venant-71,
  Author	= {de Saint-Venant, A.J.C.},
  Journal	= {C. R. Acad. Sc. Paris},
  Pages		= {147--154},
  Title		= {Th{\'e}orie du mouvement non-permanent des eaux, avec
		  application aux crues des rivi{\`e}res et {\`a}
		  l'introduction des mar{\'e}es dans leur lit},
  Volume	= {73},
  Year		= {1871}
}

###Article{	  saint-venant-71,
  Author	= {de Saint-Venant, A.J.C.},
  Journal	= {C. R. Acad. Sc. Paris},
  Pages		= {147--154},
  Title		= {Th{\'e}orie du mouvement non-permanent des eaux, avec
		  application aux crues des rivi{\`e}res et {\`a}
		  l'introduction des mar{\'e}es dans leur lit},
  Volume	= {73},
  Year		= {1871}
}

@Article{	  saintemarie2006,
  Title		= "Modeling and estimation of the cardiac electromechanical
		  activity",
  Journal	= "Computers \& Structures",
  Volume	= "84",
  Number	= "28",
  Pages		= "1743 - 1759",
  Year		= "2006",
  Note		= "",
  ISSN		= "0045-7949",
  DOI		= "10.1016/j.compstruc.2006.05.003",
  Author	= "J. Sainte-Marie and D. Chapelle and R. Cimrman and M.
		  Sorine",
  Keywords	= "Computer-aided diagnosis"
}

@Article{	  salmon-thiriet-gerbeau-02,
  Author	= {Salmon, S. and Thiriet, M. and Gerbeau, J-F.},
  Journal	= {ESAIM-Proceeding},
  Pages		= {140-145},
  Title		= {Numerical simulations of blood flows in arteries for
		  interventional medicines},
  Volume	= {12},
  Year		= {2002}
}

###Article{	  salmon-thiriet-gerbeau-02,
  Author	= {Salmon, S. and Thiriet, M. and Gerbeau, J-F.},
  Journal	= {ESAIM-Proceeding},
  Pages		= {140-145},
  Title		= {Numerical simulations of blood flows in arteries for
		  interventional medicines},
  Volume	= {12},
  Year		= {2002}
}

@Article{	  salmon-thiriet-gerbeau-03,
  Author	= {Salmon, S. and Thiriet, M. and Gerbeau, J-F.},
  Journal	= {Math. Model. Num. Anal.},
  Number	= 4,
  Pages		= {631-648},
  Title		= {Medical image - based computational model of pulsatile
		  flow in saccular aneurisms },
  Volume	= 37,
  Year		= 2003
}

###Article{	  salmon-thiriet-gerbeau-03,
  Author	= {Salmon, S. and Thiriet, M. and Gerbeau, J-F.},
  Journal	= {Math. Model. Num. Anal.},
  Number	= 4,
  Pages		= {631-648},
  Title		= {Medical image - based computational model of pulsatile
		  flow in saccular aneurisms },
  Volume	= 37,
  Year		= 2003
}

@InProceedings{	  salsac-05,
  Author	= {Salsac, A.-V. and Fern\'andez, M.A. and Chomaz, J.M. and
		  Le Tallec, P.},
  BookTitle	= {Bulletin of the American Physical Society},
  Title		= {Effects of the flexibility of the arterial wall on the
		  wall shear stresses and wall tension in abdominal aortic
		  aneurysms},
  Year		= {2005}
}

###InProceedings{ salsac-05,
  Author	= {Salsac, A.-V. and Fern\'andez, M.A. and Chomaz, J.M. and
		  Le Tallec, P.},
  BookTitle	= {Bulletin of the American Physical Society},
  Title		= {Effects of the flexibility of the arterial wall on the
		  wall shear stresses and wall tension in abdominal aortic
		  aneurysms},
  Year		= {2005}
}

@Article{	  salsac-06,
  Author	= {Salsac, A.-V. and Sparks, S.R. and Chomaz, J.M. and
		  Lasheras, J.C.},
  Journal	= { J. Fluid Mech.},
  Pages		= {19-51},
  Title		= { Evolution of the wall shear stresses during the
		  progressive enlargement of symmetric abdominal aortic
		  aneurysms},
  Volume	= {550},
  Year		= {2006}
}

###Article{	  salsac-06,
  Author	= {Salsac, A.-V. and Sparks, S.R. and Chomaz, J.M. and
		  Lasheras, J.C.},
  Journal	= { J. Fluid Mech.},
  Pages		= {19-51},
  Title		= { Evolution of the wall shear stresses during the
		  progressive enlargement of symmetric abdominal aortic
		  aneurysms},
  Volume	= {550},
  Year		= {2006}
}

@Article{	  salvucci-schiavone-craiem-barra-07,
  Author	= {Salvucci, F. and Schiavone, J. and Craiem, D. and Barra,
		  J.G.},
  Journal	= {Journal of Physics: Conference Series},
  Volume	= {90},
  Title		= {Arterial wall mechanics as a function of heart rate: role
		  of vascular smooth muscle},
  Year		= {2007}
}

###Article{	  salvucci-schiavone-craiem-barra-07,
  Author	= {Salvucci, F. and Schiavone, J. and Craiem, D. and Barra,
		  J.G.},
  Journal	= {Journal of Physics: Conference Series},
  Volume	= {90},
  Title		= {Arterial wall mechanics as a function of heart rate: role
		  of vascular smooth muscle},
  Year		= {2007}
}

@Article{	  samsel-perelson-82,
  Annote	= {red blood cell},
  Author	= {Samsel, R.W. and Perelson, A.S.},
  code		= {cel11},
  Journal	= {Biophys. J.},
  Pages		= {493--514},
  Title		= {Kinetics of rouleaux formation. {I. A} mass action
		  approach with geometric features},
  Volume	= {37},
  Year		= {1982}
}

###Article{	  samsel-perelson-82,
  Annote	= {red blood cell},
  Author	= {Samsel, R.W. and Perelson, A.S.},
  code		= {cel11},
  Journal	= {Biophys. J.},
  Pages		= {493--514},
  Title		= {Kinetics of rouleaux formation. {I. A} mass action
		  approach with geometric features},
  Volume	= {37},
  Year		= {1982}
}

@Article{	  samsel-perelson-84,
  Annote	= {red blood cell},
  Author	= {Samsel, R.W. and Perelson, A.S.},
  code		= {cel12},
  Journal	= {Biophys. J.},
  Pages		= {805--824},
  Title		= {Kinetics of rouleaux formation. {II. Reversible
		  reactions}},
  Volume	= {45},
  Year		= {1984}
}

###Article{	  samsel-perelson-84,
  Annote	= {red blood cell},
  Author	= {Samsel, R.W. and Perelson, A.S.},
  code		= {cel12},
  Journal	= {Biophys. J.},
  Pages		= {805--824},
  Title		= {Kinetics of rouleaux formation. {II. Reversible
		  reactions}},
  Volume	= {45},
  Year		= {1984}
}

@InBook{	  samsel-perelson-84b,
  Annote	= {red blood cell},
  Author	= {Samsel, R.W. and Perelson, A.S.},
  code		= {cel13},
  Pages		= {805--824},
  Publisher	= {Elsevier Sciences Pub.},
  Title		= {Kinetics of red blood cell aggregation: an example of
		  geometric polymerization},
  Year		= {1984}
}

###InBook{	  samsel-perelson-84b,
  Annote	= {red blood cell},
  Author	= {Samsel, R.W. and Perelson, A.S.},
  code		= {cel13},
  Pages		= {805--824},
  Publisher	= {Elsevier Sciences Pub.},
  Title		= {Kinetics of red blood cell aggregation: an example of
		  geometric polymerization},
  Year		= {1984}
}

@Article{	  sanchez-palencia-68,
  Annote	= {mhd, existence},
  Author	= {Sanchez-Palancia, E.},
  code		= {mhd2},
  Journal	= {Journal de M{\'e}canique},
  Month		= {Septembre},
  Number	= {3},
  Pages		= {405-426},
  Title		= {Existence des solutions de certains probl{\`e}mes aux
		  limites en magn{\'e}tohydrodynamique},
  Volume	= {7},
  Year		= {1968}
}

###Article{	  sanchez-palencia-68,
  Annote	= {mhd, existence},
  Author	= {Sanchez-Palancia, E.},
  code		= {mhd2},
  Journal	= {Journal de M{\'e}canique},
  Month		= {Septembre},
  Number	= {3},
  Pages		= {405-426},
  Title		= {Existence des solutions de certains probl{\`e}mes aux
		  limites en magn{\'e}tohydrodynamique},
  Volume	= {7},
  Year		= {1968}
}

@Article{	  sanchez-palencia-69,
  Annote	= {mhd, existence},
  Author	= {Sanchez-Palancia, E.},
  code		= {mhd3},
  Journal	= {Journal de M{\'e}canique},
  Number	= {4},
  Pages		= {509-541},
  Title		= {Quelques r{\'e}sultats d'existence et d'unicit{\'e} pour
		  des {\'e}coulements magn{\'e}tohydrodynamiques non
		  stationnaires},
  Volume	= {8},
  Year		= {1969}
}

###Article{	  sanchez-palencia-69,
  Annote	= {mhd, existence},
  Author	= {Sanchez-Palancia, E.},
  code		= {mhd3},
  Journal	= {Journal de M{\'e}canique},
  Number	= {4},
  Pages		= {509-541},
  Title		= {Quelques r{\'e}sultats d'existence et d'unicit{\'e} pour
		  des {\'e}coulements magn{\'e}tohydrodynamiques non
		  stationnaires},
  Volume	= {8},
  Year		= {1969}
}

@Article{	  sanchez1996,
  Title		= {Ventricular myoarchitecture in tetralogy of Fallot.},
  Author	= {Sanchez-Quintana, D. and Anderson, R. H. and Ho, S. Y.},
  Journal	= {Heart},
  Volume	= {76},
  Number	= {3},
  Pages		= {280--286},
  Year		= {1996},
  Publisher	= {BMJ Publishing Group Ltd and British Cardiovascular
		  Society}
}

@InProceedings{	  sands2008,
  Title		= {Virtual sectioning of cardiac tissue relative to fiber
		  orientation},
  Author	= {Sands, G. B. and Smaill, B. H. and LeGrice, I. J.},
  BookTitle	= {Engineering in Medicine and Biology Society, 2008. EMBS
		  2008. 30th Annual International Conference of the IEEE},
  Pages		= {226--229},
  Year		= {2008}
}

@Article{	  sankaran_fast_2015,
  Title		= {Fast {{Computation}} of {{Hemodynamic Sensitivity}} to
		  {{Lumen Segmentation Uncertainty}}},
  Volume	= {34},
  ISSN		= {0278-0062},
  DOI		= {10.1109/TMI.2015.2445777},
  Abstract	= {Patient-specific blood flow modeling combining imaging
		  data and computational fluid dynamics can aid in the
		  assessment of coronary artery disease. Accurate coronary
		  segmentation and realistic physiologic modeling of boundary
		  conditions are important steps to ensure a high diagnostic
		  performance. Segmentation of the coronary arteries can be
		  constructed by a combination of automated algorithms with
		  human review and editing. However, blood pressure and flow
		  are not impacted equally by different local sections of the
		  coronary artery tree. Focusing human review and editing
		  towards regions that will most affect the subsequent
		  simulations can significantly accelerate the review
		  process. We define geometric sensitivity as the standard
		  deviation in hemodynamics-derived metrics due to
		  uncertainty in lumen segmentation. We develop a machine
		  learning framework for estimating the geometric sensitivity
		  in real time. Features used include geometric and clinical
		  variables, and reduced-order models. We develop an
		  anisotropic kernel regression method for assessment of
		  lumen narrowing score, which is used as a feature in the
		  machine learning algorithm. A multi-resolution sensitivity
		  algorithm is introduced to hierarchically refine regions of
		  high sensitivity so that we can quantify sensitivities to a
		  desired spatial resolution. We show that the mean absolute
		  error of the machine learning algorithm compared to 3D
		  simulations is less than 0.01. We further demonstrate that
		  sensitivity is not predicted simply by anatomic reduction
		  but also encodes information about hemodynamics which in
		  turn depends on downstream boundary conditions. This
		  sensitivity approach can be extended to other systems such
		  as cerebral flow, electro-mechanical simulations, etc.},
  Number	= {12},
  JournalTitle	= {IEEE Transactions on Medical Imaging},
  Date		= {2015-12},
  Pages		= {2562-2571},
  Author	= {Sankaran, S. and Grady, L. and Taylor, C. A.}
}

###Article{	  sankaran_fast_2015,
  Title		= {Fast {{Computation}} of {{Hemodynamic Sensitivity}} to
		  {{Lumen Segmentation Uncertainty}}},
  Volume	= {34},
  ISSN		= {0278-0062},
  DOI		= {10.1109/TMI.2015.2445777},
  Abstract	= {Patient-specific blood flow modeling combining imaging
		  data and computational fluid dynamics can aid in the
		  assessment of coronary artery disease. Accurate coronary
		  segmentation and realistic physiologic modeling of boundary
		  conditions are important steps to ensure a high diagnostic
		  performance. Segmentation of the coronary arteries can be
		  constructed by a combination of automated algorithms with
		  human review and editing. However, blood pressure and flow
		  are not impacted equally by different local sections of the
		  coronary artery tree. Focusing human review and editing
		  towards regions that will most affect the subsequent
		  simulations can significantly accelerate the review
		  process. We define geometric sensitivity as the standard
		  deviation in hemodynamics-derived metrics due to
		  uncertainty in lumen segmentation. We develop a machine
		  learning framework for estimating the geometric sensitivity
		  in real time. Features used include geometric and clinical
		  variables, and reduced-order models. We develop an
		  anisotropic kernel regression method for assessment of
		  lumen narrowing score, which is used as a feature in the
		  machine learning algorithm. A multi-resolution sensitivity
		  algorithm is introduced to hierarchically refine regions of
		  high sensitivity so that we can quantify sensitivities to a
		  desired spatial resolution. We show that the mean absolute
		  error of the machine learning algorithm compared to 3D
		  simulations is less than 0.01. We further demonstrate that
		  sensitivity is not predicted simply by anatomic reduction
		  but also encodes information about hemodynamics which in
		  turn depends on downstream boundary conditions. This
		  sensitivity approach can be extended to other systems such
		  as cerebral flow, electro-mechanical simulations, etc.},
  Number	= {12},
  JournalTitle	= {IEEE Transactions on Medical Imaging},
  Year		= {2015-12},
  Pages		= {2562-2571},
  Author	= {Sankaran, S. and Grady, L. and Taylor, C. A.}
}

@Article{	  sankaran_impact_2015,
  Title		= {Impact of Geometric Uncertainty on Hemodynamic Simulations
		  Using Machine Learning},
  Volume	= {297},
  JournalTitle	= {Computer Methods in Applied Mechanics and Engineering},
  Date		= {2015},
  Pages		= {167--190},
  Author	= {Sankaran, Sethuraman and Grady, Leo and Taylor, Charles
		  A.}
}

###Article{	  sankaran_impact_2015,
  Title		= {Impact of Geometric Uncertainty on Hemodynamic Simulations
		  Using Machine Learning},
  Volume	= {297},
  JournalTitle	= {Computer Methods in Applied Mechanics and Engineering},
  Year		= {2015},
  Pages		= {167--190},
  Author	= {Sankaran, Sethuraman and Grady, Leo and Taylor, Charles
		  A.}
}

@Article{	  sankaran_stochastic_2011,
  Title		= {A Stochastic Collocation Method for Uncertainty
		  Quantification and Propagation in Cardiovascular
		  Simulations},
  Volume	= {133},
  Number	= {3},
  JournalTitle	= {Journal of biomechanical engineering},
  Date		= {2011},
  Pages		= {031001},
  Author	= {Sankaran, Sethuraman and Marsden, Alison L.}
}

###Article{	  sankaran_stochastic_2011,
  Title		= {A Stochastic Collocation Method for Uncertainty
		  Quantification and Propagation in Cardiovascular
		  Simulations},
  Volume	= {133},
  Number	= {3},
  JournalTitle	= {Journal of biomechanical engineering},
  Year		= {2011},
  Pages		= {031001},
  Author	= {Sankaran, Sethuraman and Marsden, Alison L.}
}

@Article{	  sankaran_uncertainty_2016,
  Title		= {Uncertainty Quantification in Coronary Blood Flow
		  Simulations: Impact of Geometry, Boundary Conditions and
		  Blood Viscosity},
  Volume	= {49},
  ShortTitle	= {Uncertainty Quantification in Coronary Blood Flow
		  Simulations},
  Number	= {12},
  JournalTitle	= {Journal of biomechanics},
  Date		= {2016},
  Pages		= {2540--2547},
  Author	= {Sankaran, Sethuraman and Kim, Hyun Jin and Choi, Gilwoo
		  and Taylor, Charles A.}
}

###Article{	  sankaran_uncertainty_2016,
  Title		= {Uncertainty Quantification in Coronary Blood Flow
		  Simulations: Impact of Geometry, Boundary Conditions and
		  Blood Viscosity},
  Volume	= {49},
  ShortTitle	= {Uncertainty Quantification in Coronary Blood Flow
		  Simulations},
  Number	= {12},
  JournalTitle	= {Journal of biomechanics},
  Year		= {2016},
  Pages		= {2540--2547},
  Author	= {Sankaran, Sethuraman and Kim, Hyun Jin and Choi, Gilwoo
		  and Taylor, Charles A.}
}

@Book{		  saramito,
  Author	= {Saramito, B.},
  Publisher	= {Masson},
  Title		= {Stabilit{\'e} d'un plasma~: mod{\'e}lisation
		  math{\'e}matique et simulation num{\'e}rique},
  Year		= {1994}
}

###Book{	  saramito,
  Author	= {Saramito, B.},
  Publisher	= {Masson},
  Title		= {Stabilit{\'e} d'un plasma~: mod{\'e}lisation
		  math{\'e}matique et simulation num{\'e}rique},
  Year		= {1994}
}

@Article{	  sassara-achili-bianchi-2004,
  Author	= {Sassara, M. and Achilli, A. and Bianchi, S. and et al.},
  Journal	= {PACE},
  Title		= {Long-term effectiveness of dual site left ventricular
		  cardiac resynchronization therapy in a patient with
		  congestive heart failure},
  Volume	= {27},
  Year		= {2004}
}

###Article{	  sassara-achili-bianchi-2004,
  Author	= {Sassara, M. and Achilli, A. and Bianchi, S. and et al.},
  Journal	= {PACE},
  Title		= {Long-term effectiveness of dual site left ventricular
		  cardiac resynchronization therapy in a patient with
		  congestive heart failure},
  Volume	= {27},
  Year		= {2004}
}

###Article{	  sassara-achili-bianchi-2004,
  Author	= {Sassara, M. and Achilli, A. and Bianchi, S. and et al.},
  Journal	= {PACE},
  Title		= {Long-term effectiveness of dual site left ventricular
		  cardiac resynchronization therapy in a patient with
		  congestive heart failure},
  Volume	= {27},
  Year		= {2004}
}

###Article{	  sassara-achili-bianchi-2004,
  Author	= {Sassara, M. and Achilli, A. and Bianchi, S. and et al.},
  Journal	= {PACE},
  Title		= {Long-term effectiveness of dual site left ventricular
		  cardiac resynchronization therapy in a patient with
		  congestive heart failure},
  Volume	= {27},
  Year		= {2004}
}

@Article{	  savadjiev2012heart,
  Title		= {Heart wall myofibers are arranged in minimal surfaces to
		  optimize organ function},
  Author	= {Savadjiev, Peter and Strijkers, Gustav J and Bakermans,
		  Adrianus J and Piuze, Emmanuel and Zucker, Steven W and
		  Siddiqi, Kaleem},
  Journal	= {Proceedings of the National Academy of Sciences},
  Volume	= {109},
  Number	= {24},
  Pages		= {9248--9253},
  Year		= {2012},
  Publisher	= {National Acad Sciences}
}

@Article{	  schriefl-etal-11,
  Title		= {Determination of the layer-specific distributed collagen
		  fibre orientations in human thoracic and abdominal aortas
		  and common iliac arteries},
  Author	= {Schriefl, Andreas J and Zeindlinger, Georg and Pierce,
		  David M and Regitnig, Peter and Holzapfel, Gerhard A},
  Journal	= {Journal of the Royal Society Interface},
  Volume	= {9},
  Number	= {71},
  Pages		= {1275--1286},
  Year		= {2012},
  Publisher	= {The Royal Society}
}

@Article{	  scollan1998,
  Author	= {Scollan, D. F. and Holmes, A. and Winslow, R. and Forder,
		  J.},
  Title		= {Histological validation of myocardial microstructure
		  obtained from diffusion tensor magnetic resonance imaging},
  Volume	= {275},
  Number	= {6},
  Pages		= {H2308-H2318},
  Year		= {1998},
  Abstract	= {Diffusion tensor magnetic resonance imaging (MRI) is a
		  possible new means of elucidating the anatomic structure of
		  the myocardium. It enjoys several advantages over
		  traditional histological approaches, including the ability
		  to rapidly measure fiber organization in isolated,
		  perfused, arrested hearts, thereby avoiding fixation and
		  sectioning of artifacts. However, quantitative validation
		  of this MRI method has been lacking. Here, fiber
		  orientations estimated in the same locations in the same
		  heart using both diffusion tensor MRI and histology are
		  compared in a total of two perfused rabbit hearts. Fiber
		  orientations were statistically similar for both methods
		  and differed on average by 12Â° at any single location.
		  This is similar to the 10Â° uncertainty in fiber
		  orientation achieved with histology. In addition, imaging
		  studies performed in a total of seven hearts support a
		  level of organization beyond the myofiber, the recently
		  described laminar organization of the ventricular
		  myocardium.},
  Journal	= {American Journal of Physiology - Heart and Circulatory
		  Physiology}
}

@Article{	  scollan1998histological,
  Title		= {Histological validation of myocardial microstructure
		  obtained from diffusion tensor magnetic resonance imaging},
  Author	= {Scollan, D.F. and Holmes, A. and Winslow, R. and Forder,
		  J.},
  Journal	= {American Journal of Physiology-Heart and Circulatory
		  Physiology},
  Volume	= {275},
  Number	= {6},
  Pages		= {H2308--H2318},
  Year		= {1998},
  Publisher	= {Am Physiological Soc}
}

@Article{	  scott-zhang-90,
  Author	= {Scott, L.~R. and Zhang, S.},
  Title		= {Finite element interpolation of nonsmooth functions
		  satisfying boundary conditions},
  Journal	= {Math. Comp.},
  fjournal	= {Mathematics of Computation},
  Volume	= {54},
  Year		= {1990},
  Number	= {190},
  Pages		= {483--493}
}

###Article{	  scott-zhang-90,
  Author	= {Scott, L.~R. and Zhang, S.},
  Title		= {Finite element interpolation of nonsmooth functions
		  satisfying boundary conditions},
  Journal	= {Math. Comp.},
  fjournal	= {Mathematics of Computation},
  Volume	= {54},
  Year		= {1990},
  Number	= {190},
  Pages		= {483--493}
}

@Article{	  scott1985norm,
  Title		= {Norm estimates for a maximal right inverse of the
		  divergence operator in spaces of piecewise polynomials},
  Author	= {Scott, LR and Vogelius, M},
  Journal	= {RAIRO-Mod{\'e}lisation math{\'e}matique et analyse
		  num{\'e}rique},
  Volume	= {19},
  Number	= {1},
  Pages		= {111--143},
  Year		= {1985}
}

###Article{	  scott1985norm,
  Title		= {Norm estimates for a maximal right inverse of the
		  divergence operator in spaces of piecewise polynomials},
  Author	= {Scott, LR and Vogelius, M},
  Journal	= {RAIRO-Mod{\'e}lisation math{\'e}matique et analyse
		  num{\'e}rique},
  Volume	= {19},
  Number	= {1},
  Pages		= {111--143},
  Year		= {1985}
}

@Article{	  segal2010precond,
  Title		= {Preconditioners for incompressible Navier-Stokes solvers},
  Author	= {Segal, A and ur Rehman, M and Vuik, C},
  Journal	= {Numerical Mathematics: Theory, Methods and Applications},
  Volume	= {3},
  Number	= {3},
  Pages		= {245--275},
  Year		= {2010}
}

@Article{	  segatz-droste-94,
  Annote	= {mhd, aluminium, stability},
  Author	= {Segatz, M. and Droste, C.},
  code		= {mhd33},
  Journal	= {Light Metals},
  Pages		= {313-322},
  Title		= {Analysis of magnetohydrodynamic instabilities in aluminium
		  reduction cells},
  Year		= {1994}
}

###Article{	  segatz-droste-94,
  Annote	= {mhd, aluminium, stability},
  Author	= {Segatz, M. and Droste, C.},
  code		= {mhd33},
  Journal	= {Light Metals},
  Pages		= {313-322},
  Title		= {Analysis of magnetohydrodynamic instabilities in aluminium
		  reduction cells},
  Year		= {1994}
}

@Article{	  segers2008nature,
  Title		= {Stem-cell therapy for cardiac disease},
  Author	= {Segers, Vincent and Lee, Richard},
  Journal	= {Nature},
  Year		= {2008},
  Month		= {Feb},
  Number	= {7181},
  Pages		= {937--942},
  Volume	= {451},
  DOI		= {10.1038/nature06800},
  File		= {:Segers2008Nature.pdf:PDF},
  ISSN		= {1476-4687},
  Publisher	= {Nature Publishing Group},
  URL		= {http://dx.doi.org/10.1038/nature06800}
}

@Article{	  segment,
  Title		= {Design and validation of Segment - freely available
		  software for cardiovascular image analysis},
  Author	= {Heiberg, Einar and Sjogren, Jane and Ugander, Martin and
		  Carlsson, Marcus and Engblom, Henrik and Arheden, Hakan},
  Journal	= {BMC Medical Imaging},
  Year		= {2010},
  Number	= {1},
  Pages		= {1},
  Volume	= {10},
  Abstract	= {BACKGROUND:Commercially available software for
		  cardiovascular image analysis often has limited
		  functionality and frequently lacks the careful validation
		  that is required for clinical studies. We have already
		  implemented a cardiovascular image analysis software
		  package and released it as freeware for the research
		  community. However, it was distributed as a stand-alone
		  application and other researchers could not extend it by
		  writing their own custom image analysis algorithms. We
		  believe that the work required to make a clinically
		  applicable prototype can be reduced by making the software
		  extensible, so that researchers can develop their own
		  modules or improvements. Such an initiative might then
		  serve as a bridge between image analysis research and
		  cardiovascular research. The aim of this article is
		  therefore to present the design and validation of a
		  cardiovascular image analysis software package (Segment)
		  and to announce its release in a source code
		  format.RESULTS:Segment can be used for image analysis in
		  magnetic resonance imaging (MRI), computed tomography (CT),
		  single photon emission computed tomography (SPECT) and
		  positron emission tomography (PET). Some of its main
		  features include loading of DICOM images from all major
		  scanner vendors, simultaneous display of multiple image
		  stacks and plane intersections, automated segmentation of
		  the left ventricle, quantification of MRI flow, tools for
		  manual and general object segmentation, quantitative
		  regional wall motion analysis, myocardial viability
		  analysis and image fusion tools. Here we present an
		  overview of the validation results and validation
		  procedures for the functionality of the software. We
		  describe a technique to ensure continued accuracy and
		  validity of the software by implementing and using a test
		  script that tests the functionality of the software and
		  validates the output. The software has been made freely
		  available for research purposes in a source code format on
		  the project home page http://segment.heiberg.se
		  webcite.CONCLUSIONS: Segment is a well-validated
		  comprehensive software package for cardiovascular image
		  analysis. It is freely available for research purposes
		  provided that relevant original research publications
		  related to the software are cited.},
  DOI		= {10.1186/1471-2342-10-1},
  ISSN		= {1471-2342},
  pubmedid	= {20064248},
  timestamp	= {2015/09/23},
  URL		= {http://www.biomedcentral.com/1471-2342/10/1}
}

@Article{	  sele-77,
  Author	= {Sele, T.},
  Journal	= {Light Metal},
  Pages		= {7-24},
  Title		= {Instabilities of the metal surface in electrolytic cells},
  Year		= {1977}
}

###Article{	  sele-77,
  Author	= {Sele, T.},
  Journal	= {Light Metal},
  Pages		= {7-24},
  Title		= {Instabilities of the metal surface in electrolytic cells},
  Year		= {1977}
}

@TechReport{	  sermange-81,
  Annote	= {mhd, stability, plasma},
  Author	= {Sermange, M.},
  code		= {mhd26},
  Institution	= {INRIA RR-92},
  Title		= {Mod{\'e}lisation de la stabilit{\'e} magnetohydrodynamique
		  bidimensionnelle par une {\'e}quation diff{\'e}rentielle
		  g{\'e}n{\'e}ralis{\'e}e},
  Year		= {1981}
}

###TechReport{	  sermange-81,
  Annote	= {mhd, stability, plasma},
  Author	= {Sermange, M.},
  code		= {mhd26},
  Institution	= {INRIA RR-92},
  Title		= {Mod{\'e}lisation de la stabilit{\'e} magnetohydrodynamique
		  bidimensionnelle par une {\'e}quation diff{\'e}rentielle
		  g{\'e}n{\'e}ralis{\'e}e},
  Year		= {1981}
}

@Article{	  sermange-temam-83,
  Annote	= {mhd, existence, long time},
  Author	= {Sermange, M. and Temam, R.},
  code		= {mhd1},
  Journal	= {Comm. Pure Appl. Math.},
  Pages		= {635-664},
  Title		= {Some mathematical questions related to the {MHD}
		  equations},
  Volume	= {XXXVI},
  Year		= {1983}
}

###Article{	  sermange-temam-83,
  Annote	= {mhd, existence, long time},
  Author	= {Sermange, M. and Temam, R.},
  code		= {mhd1},
  Journal	= {Comm. Pure Appl. Math.},
  Pages		= {635-664},
  Title		= {Some mathematical questions related to the {MHD}
		  equations},
  Volume	= {XXXVI},
  Year		= {1983}
}

@Article{	  sermesant-coudiere-03,
  Author	= {Sermesant, M. and Coudi{\`e}re, Y. and Delingette, H. and
		  Ayache, N. and Sainte-Marie, J. and Chapelle, D. and
		  Cl{\'e}ment, F. and Sorine, M.},
  Journal	= {ESAIM-Proceedings},
  Pages		= {153-161},
  Title		= {Progress towards model-based estimation of the cardiac
		  electromechanical activity from ECG signals and 4D images},
  Volume	= {12},
  Year		= {2003}
}

###Article{	  sermesant-coudiere-03,
  Author	= {Sermesant, M. and Coudi{\`e}re, Y. and Delingette, H. and
		  Ayache, N. and Sainte-Marie, J. and Chapelle, D. and
		  Cl{\'e}ment, F. and Sorine, M.},
  Journal	= {ESAIM-Proceedings},
  Pages		= {153-161},
  Title		= {Progress towards model-based estimation of the cardiac
		  electromechanical activity from ECG signals and 4D images},
  Volume	= {12},
  Year		= {2003}
}

@Article{	  sermesant2012crt,
  Title		= {Patient-specific electromechanical models of the heart for
		  the prediction of pacing acute effects in CRT: a
		  preliminary clinical validation},
  Author	= {Sermesant, Maxime and Chabiniok, Radomir and
		  Chinchapatnam, Phani and Mansi, Tommaso and Billet,
		  Florence and Moireau, Philippe and Peyrat, Jean-Marc and
		  Wong, K and Relan, Jatin and Rhode, Kawal and others},
  Journal	= {Medical image analysis},
  Volume	= {16},
  Number	= {1},
  Pages		= {201--215},
  Year		= {2012},
  Publisher	= {Elsevier}
}

@Article{	  sermesant2012media,
  Title		= {Patient-specific electromechanical models of the heart for
		  the prediction of pacing acute effects in {CRT}: A
		  preliminary clinical validation},
  Author	= {Sermesant, M. and Chabiniok, R. and Chinchapatnam, P. and
		  Mansi, T. and Billet, F. and Moireau, P. and Peyrat, J.M.
		  and Wong, K. and Relan, J. and Rhode, K. and Ginks, M. and
		  Lambiase, P. and Delingette, H. and Sorine, M. and Rinaldi,
		  C.A. and Chapelle, D. and Razavi, R. and Ayache, N.},
  Journal	= {Medical Image Analysis},
  Year		= {2012},
  Month		= jan,
  Number	= {1},
  Pages		= {201--215},
  Volume	= {16},
  DOI		= {10.1016/j.media.2011.07.003},
  File		= {Sermesant2012.pdf:/home/hoermann/.zotero/zotero/krpbc0h6.default/zotero/storage/Z7FKWGTJ/Sermesant2012.pdf:application/pdf},
  ISSN		= {13618415},
  Keywords	= {{CRT}},
  Language	= {en},
  ShortTitle	= {Patient-specific electromechanical models of the heart for
		  the prediction of pacing acute effects in {CRT}},
  URL		= {http://linkinghub.elsevier.com/retrieve/pii/S1361841511001009},
  URLDate	= {2014-11-27}
}

@Book{		  serre-96,
  Author	= {Serre, D.},
  Publisher	= {Diderot Editeur, Paris},
  Title		= {Syst{\`e}mes de lois de conservation. {I \& II}},
  Year		= {1996}
}

###Book{	  serre-96,
  Author	= {Serre, D.},
  Publisher	= {Diderot Editeur, Paris},
  Title		= {Syst{\`e}mes de lois de conservation. {I \& II}},
  Year		= {1996}
}

@Article{	  shi-lawford-hose-11,
  Author	= {Shi, Y. and Lawford, P. and Hose, R.},
  Journal	= {Biomed Eng Online},
  Pages		= {33},
  Title		= {Review of zero-D and 1-D models of blood flow in the
		  cardiovascular system},
  Volume	= {10},
  Year		= {2011}
}

###Article{	  shi-lawford-hose-11,
  Author	= {Shi, Y. and Lawford, P. and Hose, R.},
  Journal	= {Biomed Eng Online},
  Pages		= {33},
  Title		= {Review of zero-D and 1-D models of blood flow in the
		  cardiovascular system},
  Volume	= {10},
  Year		= {2011}
}

@Article{	  shi_patient-specific_2019,
  langid	= {english},
  Title		= {Patient-Specific Non-Invasive Estimation of Pressure
		  Gradient across Aortic Coarctation Using Magnetic Resonance
		  Imaging},
  ISSN		= {09145087},
  URL		= {https://linkinghub.elsevier.com/retrieve/pii/S0914508718303691},
  DOI		= {10.1016/j.jjcc.2018.12.016},
  JournalTitle	= {Journal of Cardiology},
  URLDate	= {2019-02-04},
  Year		= {2019-01},
  Author	= {Shi, Yubing and Valverde, Israel and Lawford, Patricia V.
		  and Beerbaum, Philipp and Hose, D. Rodney}
}

@Article{	  si2008adaptive,
  Title		= {Adaptive tetrahedral mesh generation by constrained
		  Delaunay refinement},
  Author	= {Si, Hang},
  Journal	= {International Journal for Numerical Methods in
		  Engineering},
  Volume	= {75},
  Number	= {7},
  Pages		= {856--880},
  Year		= {2008},
  Publisher	= {Wiley Online Library}
}

@Article{	  simo-armero-taylor-95,
  Author	= {Simo, J.C. and Armero, F. and Taylor, C.A.},
  Journal	= {Int. Jour. Num. Meth. Eng.},
  Pages		= {1475-1506},
  Title		= {Stable and time-dissipative finite element methods for the
		  incompressible {Navier-Stokes} equations in advection
		  dominated flows},
  Volume	= {38},
  Year		= {1995}
}

###Article{	  simo-armero-taylor-95,
  Author	= {Simo, J.C. and Armero, F. and Taylor, C.A.},
  Journal	= {Int. Jour. Num. Meth. Eng.},
  Pages		= {1475-1506},
  Title		= {Stable and time-dissipative finite element methods for the
		  incompressible {Navier-Stokes} equations in advection
		  dominated flows},
  Volume	= {38},
  Year		= {1995}
}

@Article{	  simo-fox-rifai-89,
  Author	= {Simo, J.C and Fox, D.D and Rifai, M.S},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Pages		= {267-304},
  Title		= {On a stress resultant geometrically exact shell model,
		  {Part I} : Formulation and optimal parametrization},
  Volume	= {72},
  Year		= {1989}
}

###Article{	  simo-fox-rifai-89,
  Author	= {Simo, J.C and Fox, D.D and Rifai, M.S},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Pages		= {267-304},
  Title		= {On a stress resultant geometrically exact shell model,
		  {Part I} : Formulation and optimal parametrization},
  Volume	= {72},
  Year		= {1989}
}

@Book{		  simon-06,
  Title		= {{Optimal state estimation: Kalman, H infinity, and
		  nonlinear approaches}},
  Author	= {Simon, D.},
  ISBN		= {0470045337},
  Year		= {2006},
  Publisher	= {Wiley-Interscience}
}

###Book{	  simon-06,
  Title		= {{Optimal state estimation: Kalman, H infinity, and
		  nonlinear approaches}},
  Author	= {Simon, D.},
  ISBN		= {0470045337},
  Year		= {2006},
  Publisher	= {Wiley-Interscience}
}

@Unpublished{	  simon-09,
  Author	= {Simon, D.},
  Note		= {IET Control Theory \& Applications, accepted for
		  publication},
  Title		= {Kalman Filtering with State Constraints: A Survey of
		  Linear and Nonlinear Algorithms},
  Year		= {2009}
}

###Unpublished{	  simon-09,
  Author	= {Simon, D.},
  Note		= {IET Control Theory \& Applications, accepted for
		  publication},
  Title		= {Kalman Filtering with State Constraints: A Survey of
		  Linear and Nonlinear Algorithms},
  Year		= {2009}
}

@Article{	  simoons1986jacc,
  Title		= {Early thrombolysis in acute myocardial infarction:
		  Limitation of infarct size and improved survival},
  Author	= {Simoons, Maarten L. and Serruys, Patrick W. and van den
		  Brand, Marcel and Res, Jan and Verheugt, Freek W.A. and
		  Krauss, X. Hanno and Remme, Willem J. and BÃ¤r, Frits and
		  Zwaan, Chris de and Laarse, Arnoud van der and Vermeer,
		  Frank and Lubsen, Jacobus},
  Journal	= {Journal of the American College of Cardiology},
  Year		= {1986},
  Number	= {4},
  Pages		= {717-728},
  Volume	= {7},
  DOI		= {10.1016/S0735-1097(86)80329-1},
  EPrint	= {/data/Journals/JAC/22724/03291.pdf},
  File		= {simoons86.pdf:simoons86.pdf:PDF},
  timestamp	= {2015/09/13},
  URL		= { + http://dx.doi.org/10.1016/S0735-1097(86)80329-1}
}

@Article{	  singh-2002,
  Author	= {Balbir Singh},
  Journal	= {Indian Pacing Electrophysioly Journal},
  Title		= {Biventricular pacing in congestive heart failure},
  Volume	= {2},
  Year		= {2002}
}

###Article{	  singh-2002,
  Author	= {Balbir Singh},
  Journal	= {Indian Pacing Electrophysioly Journal},
  Title		= {Biventricular pacing in congestive heart failure},
  Volume	= {2},
  Year		= {2002}
}

###Article{	  singh-2002,
  Author	= {Balbir Singh},
  Journal	= {Indian Pacing Electrophysioly Journal},
  Title		= {Biventricular pacing in congestive heart failure},
  Volume	= {2},
  Year		= {2002}
}

###Article{	  singh-2002,
  Author	= {Balbir Singh},
  Journal	= {Indian Pacing Electrophysioly Journal},
  Title		= {Biventricular pacing in congestive heart failure},
  Volume	= {2},
  Year		= {2002}
}

@InCollection{	  skalak-81,
  Annote	= {blood, red cell},
  Author	= {Skalak, R.},
  BookTitle	= {Mathematical aspects of physiology (Proc. Summer Sem.,
		  Univ. Utah, Salt Lake City, Utah, 1980)},
  code		= {cel8},
  Pages		= {109--139},
  Publisher	= {Amer. Math. Soc.},
  Series	= {Lectures in Appl. Math.},
  Title		= {Blood rheology},
  Volume	= {19},
  Year		= {1981}
}

###InCollection{  skalak-81,
  Annote	= {blood, red cell},
  Author	= {Skalak, R.},
  BookTitle	= {Mathematical aspects of physiology (Proc. Summer Sem.,
		  Univ. Utah, Salt Lake City, Utah, 1980)},
  code		= {cel8},
  Pages		= {109--139},
  Publisher	= {Amer. Math. Soc.},
  Series	= {Lectures in Appl. Math.},
  Title		= {Blood rheology},
  Volume	= {19},
  Year		= {1981}
}

@Article{	  skalak-zarda-jan-chien-81,
  Annote	= {blood, red cell, rouleau, adhesion},
  Author	= {Skalak, R. and Zarda, P.R. and Jan, K.-M. and Chien, S.},
  code		= {cel10},
  Journal	= {Biophys. J.},
  Pages		= {771-781},
  Title		= {Mechanics of rouleau formation},
  Volume	= {35},
  Year		= {1981}
}

###Article{	  skalak-zarda-jan-chien-81,
  Annote	= {blood, red cell, rouleau, adhesion},
  Author	= {Skalak, R. and Zarda, P.R. and Jan, K.-M. and Chien, S.},
  code		= {cel10},
  Journal	= {Biophys. J.},
  Pages		= {771-781},
  Title		= {Mechanics of rouleau formation},
  Volume	= {35},
  Year		= {1981}
}

@Article{	  smith-hunter-2002,
  Author	= {Smith, N.P. and Mulquiney, P.J. and Nash, M.P. and
		  Bradley, C.P. and Nickerson, D.P. and Hunter, P.J.},
  Journal	= {Chaos, Solitons and Fractals},
  Pages		= {1613-1621},
  Title		= {Mathematical modelling of the heart: cell to organ},
  Volume	= {13},
  Year		= {2002}
}

###Article{	  smith-hunter-2002,
  Author	= {Smith, N.P. and Mulquiney, P.J. and Nash, M.P. and
		  Bradley, C.P. and Nickerson, D.P. and Hunter, P.J.},
  Journal	= {Chaos, Solitons and Fractals},
  Pages		= {1613-1621},
  Title		= {Mathematical modelling of the heart: cell to organ},
  Volume	= {13},
  Year		= {2002}
}

@Article{	  smith-pullan-hunter-2002,
  Author	= {Smith, N.P. and Pullan, A.J. and Hunter, P.J.},
  Journal	= {SIAM J. Appl. Math.},
  Number	= {3},
  Pages		= {990-1018},
  Title		= {An anatomically based model of transient coronary blood
		  flow in the heart},
  Volume	= {62},
  Year		= {2002}
}

###Article{	  smith-pullan-hunter-2002,
  Author	= {Smith, N.P. and Pullan, A.J. and Hunter, P.J.},
  Journal	= {SIAM J. Appl. Math.},
  Number	= {3},
  Pages		= {990-1018},
  Title		= {An anatomically based model of transient coronary blood
		  flow in the heart},
  Volume	= {62},
  Year		= {2002}
}

@Article{	  smith2002,
  Title		= "Mathematical modelling of the heart: cell to organ",
  Journal	= "Chaos, Solitons \& Fractals",
  Volume	= "13",
  Number	= "8",
  Pages		= "1613 - 1621",
  Year		= "2002",
  Note		= "<ce:title>Virtual Tissue Engineering of Cardiac
		  Muscle</ce:title>",
  ISSN		= "0960-0779",
  DOI		= "10.1016/S0960-0779(01)00170-9",
  Author	= "N.P Smith and P.J Mulquiney and M.P Nash and C.P Bradley
		  and D.P Nickerson and P.J Hunter"
}

@Article{	  sneyd-02,
  Author	= {Sneyd, A.D.},
  code		= {mhd42},
  Journal	= {Eur. J. Mech. B/Fluids},
  Pages		= {247-263},
  Title		= {Analysis of parametric resonance in magnetohydrodynamics},
  Volume	= {21},
  Year		= {2002}
}

###Article{	  sneyd-02,
  Author	= {Sneyd, A.D.},
  code		= {mhd42},
  Journal	= {Eur. J. Mech. B/Fluids},
  Pages		= {247-263},
  Title		= {Analysis of parametric resonance in magnetohydrodynamics},
  Volume	= {21},
  Year		= {2002}
}

@Article{	  sneyd-85,
  Annote	= {mhd, aluminium},
  Author	= {Sneyd, A.D.},
  Journal	= {J. Fluid Mech.},
  Pages		= {223--236},
  Title		= {Stability of fluid layers carrying a normal electric
		  current},
  Volume	= {156},
  Year		= {1985}
}

###Article{	  sneyd-85,
  Annote	= {mhd, aluminium},
  Author	= {Sneyd, A.D.},
  Journal	= {J. Fluid Mech.},
  Pages		= {223--236},
  Title		= {Stability of fluid layers carrying a normal electric
		  current},
  Volume	= {156},
  Year		= {1985}
}

@Article{	  sneyd-92,
  Annote	= {mhd, aluminium},
  Author	= {Sneyd, A.D.},
  Journal	= {J. Fluid Mech.},
  Pages		= {111--126},
  Title		= {Interfacial instabilities in aluminium reduction cells},
  Volume	= {236},
  Year		= {1992}
}

###Article{	  sneyd-92,
  Annote	= {mhd, aluminium},
  Author	= {Sneyd, A.D.},
  Journal	= {J. Fluid Mech.},
  Pages		= {111--126},
  Title		= {Interfacial instabilities in aluminium reduction cells},
  Volume	= {236},
  Year		= {1992}
}

@Article{	  sneyd-wang-94,
  Author	= {Sneyd, A.D. and Wang, A.},
  Journal	= {J. Fluid Mech.},
  Pages		= {343-359},
  Title		= {Interfacial instability due to MHD mode coupling in
		  aluminium reduction cells},
  Volume	= {263},
  Year		= {1994}
}

###Article{	  sneyd-wang-94,
  Author	= {Sneyd, A.D. and Wang, A.},
  Journal	= {J. Fluid Mech.},
  Pages		= {343-359},
  Title		= {Interfacial instability due to MHD mode coupling in
		  aluminium reduction cells},
  Volume	= {263},
  Year		= {1994}
}

@Article{	  solon1,
  Author	= {Solonnikov, V. A.},
  Journal	= {Math. USSR Izvestiya},
  Number	= {2},
  Pages		= {381-405},
  Title		= {On the transient motion of an isolated volume of viscous
		  incompressible fluid},
  Volume	= {31},
  Year		= {1988}
}

###Article{	  solon1,
  Author	= {Solonnikov, V. A.},
  Journal	= {Math. USSR Izvestiya},
  Number	= {2},
  Pages		= {381-405},
  Title		= {On the transient motion of an isolated volume of viscous
		  incompressible fluid},
  Volume	= {31},
  Year		= {1988}
}

@Article{	  solon2,
  Author	= {Solonnikov, V. A.},
  Journal	= {Leningrad Math. J.},
  Number	= {1},
  Pages		= {227-276},
  Title		= {On nonstationary motion of a finite isolated mass of
		  selfgravitating fluid},
  Volume	= {1},
  Year		= {1990}
}

###Article{	  solon2,
  Author	= {Solonnikov, V. A.},
  Journal	= {Leningrad Math. J.},
  Number	= {1},
  Pages		= {227-276},
  Title		= {On nonstationary motion of a finite isolated mass of
		  selfgravitating fluid},
  Volume	= {1},
  Year		= {1990}
}

@Article{	  solon4,
  Author	= {Solonnikov, V. A.},
  Journal	= {Math. USSR Izv.},
  Number	= {6},
  Pages		= {1323-1358},
  Title		= {Solvability of a problem of on the motion of a viscous
		  incompressible fluid bounded by a free surface},
  Volume	= {11},
  Year		= {1977}
}

###Article{	  solon4,
  Author	= {Solonnikov, V. A.},
  Journal	= {Math. USSR Izv.},
  Number	= {6},
  Pages		= {1323-1358},
  Title		= {Solvability of a problem of on the motion of a viscous
		  incompressible fluid bounded by a free surface},
  Volume	= {11},
  Year		= {1977}
}

@Article{	  solon5,
  Author	= {Solonnikov, V. A.},
  Journal	= {Jour. Sov. Math},
  Pages		= {223-228},
  Title		= {Solvability of the problem of evolution of an isolated
		  volume of viscous, incompressible capillary fluid},
  Volume	= {32},
  Year		= {1986}
}

###Article{	  solon5,
  Author	= {Solonnikov, V. A.},
  Journal	= {Jour. Sov. Math},
  Pages		= {223-228},
  Title		= {Solvability of the problem of evolution of an isolated
		  volume of viscous, incompressible capillary fluid},
  Volume	= {32},
  Year		= {1986}
}

@Article{	  solon6,
  Author	= {Solonnikov, V. A.},
  Journal	= {Jour. Sov. Math.},
  Pages		= {672-686},
  Title		= {Unsteady motion of a finite mass of fluid, bounded by a
		  free surface},
  Volume	= {40},
  Year		= {1988}
}

###Article{	  solon6,
  Author	= {Solonnikov, V. A.},
  Journal	= {Jour. Sov. Math.},
  Pages		= {672-686},
  Title		= {Unsteady motion of a finite mass of fluid, bounded by a
		  free surface},
  Volume	= {40},
  Year		= {1988}
}

@Article{	  solon7,
  Author	= {Solonnikov, V. A.},
  Journal	= {Math. USSR Izv.},
  Number	= {2},
  Pages		= {381-405},
  Title		= {Unsteady motion of an isolated volume of a viscous
		  incompressible fluid},
  Volume	= {31},
  Year		= {1988}
}

###Article{	  solon7,
  Author	= {Solonnikov, V. A.},
  Journal	= {Math. USSR Izv.},
  Number	= {2},
  Pages		= {381-405},
  Title		= {Unsteady motion of an isolated volume of a viscous
		  incompressible fluid},
  Volume	= {31},
  Year		= {1988}
}

@Article{	  solonnikov-87,
  Author	= {Solonnikov, V. A.},
  Journal	= {Vestnik Leningrad Univ. Mat. Mekh. Astro.},
  Pages		= {49-55},
  Title		= {Evolution of an isolated volume of a viscous
		  incompressible capillary fluid for large time values
		  (Russian)},
  Volume	= {3},
  Year		= {1987}
}

###Article{	  solonnikov-87,
  Author	= {Solonnikov, V. A.},
  Journal	= {Vestnik Leningrad Univ. Mat. Mekh. Astro.},
  Pages		= {49-55},
  Title		= {Evolution of an isolated volume of a viscous
		  incompressible capillary fluid for large time values
		  (Russian)},
  Volume	= {3},
  Year		= {1987}
}

@Article{	  sommer20123d,
  Title		= {3D constitutive modeling of the biaxial mechanical
		  response of intact and layer-dissected human carotid
		  arteries.},
  Author	= {Sommer, G. and Holzapfel, G.A.},
  Journal	= {J Mech Behav Biomed Mater},
  Volume	= {5},
  Number	= {1},
  Pages		= {116-28},
  Year		= {2012},
  Abstract	= {Human arteries with non-atherosclerotic intimal thickening
		  consist of three distinct layers: adventitia, media and
		  intima. From a series of axial extension and inflation
		  tests on intact and layer-dissected human carotid arteries
		  (adventitia and media-intima composite), a 3D
		  structurally-based strain-energy function (SEF) is
		  calibrated, and a set of five material parameters is
		  identified which is not yet available in the literature.
		  The zero-stress states of the artery tubes investigated are
		  considered in the calibration process, and the related
		  kinematics for the finite deformation of the individual
		  continuum are described in detail. The SEF employed is
		  capable of describing the different mechanical properties
		  of the intact and layer-dissected tissue tubes (arterial
		  segments) investigated at different pressure domains and
		  axial stretches. The correlation coefficients and error
		  measures determined indicate good correlation between the
		  model and the experimental data for all tested tubes. Mean
		  values of each individual material parameter provide a kind
		  of 'master model' that characterizes the mean response of
		  all mechanical data obtained from the human carotid
		  arteries. The material parameters and the 3D constitutive
		  model serve as a foundation for finite element simulations,
		  and hence the analysis of more complex patient-specific
		  boundary-value problems in the human carotid physiology and
		  pathology. }
}

@Article{	  sonesson-94,
  Author	= {Sonesson, B. and L\"anne, T. and Vernersson, E. and
		  Hansen, F.},
  Title		= {Sex difference in the mechanical properties of the
		  abdominal aorta in human beings.},
  Journal	= {Journal of Vascular Surgery},
  Volume	= {20},
  Year		= {1994},
  Number	= {6},
  Pages		= {959-69},
  pubmedid	= {7990192},
  ISSN		= {0741-5214}
}

###Article{	  sonesson-94,
  Author	= {Sonesson, B. and L\"anne, T. and Vernersson, E. and
		  Hansen, F.},
  Title		= {Sex difference in the mechanical properties of the
		  abdominal aorta in human beings.},
  Journal	= {Journal of Vascular Surgery},
  Volume	= {20},
  Year		= {1994},
  Number	= {6},
  Pages		= {959-69},
  URL		= {http://www.biomedsearch.com/nih/Sex-difference-in-mechanical-properties/7990192.html},
  pubmedid	= {7990192},
  ISSN		= {0741-5214}
}

@Article{	  song_computation_1991,
  Title		= {Computation of 3-{{D}} Velocity Fields from 3-{{D}} Cine
		  {{CT}} Images of a Human Heart},
  Volume	= {10},
  Number	= {3},
  JournalTitle	= {IEEE transactions on medical imaging},
  Year		= {1991},
  Pages		= {295--306},
  Author	= {Song, Samuel M. and Leahy, Richard M.}
}

@Article{	  song_determining_1994,
  Title		= {Determining Cardiac Velocity Fields and Intraventricular
		  Pressure Distribution from a Sequence of Ultrafast {{CT}}
		  Cardiac Images},
  Volume	= {13},
  Number	= {2},
  JournalTitle	= {IEEE transactions on medical imaging},
  Year		= {1994},
  Pages		= {386--397},
  Author	= {Song, Samuel M. and Leahy, Richard M. and Boyd, Douglas P.
		  and Brundage, Bruce H. and Napel, Sandy}
}

@Article{	  sosnovik2009cci,
  Title		= {Diffusion spectrum MRI tractography reveals the presence
		  of a complex network of residual myofibers in infarcted
		  myocardium.},
  Author	= {Sosnovik, David E. and Wang, Ruopeng and Dai, Guangping
		  and Wang, Teresa and Aikawa, Elena and Novikov, Mikhael and
		  Rosenzweig, Anthony and Gilbert, Richard J. and Wedeen, Van
		  J.},
  Journal	= {Circ Cardiovasc Imaging},
  Year		= {2009},
  Month		= {May},
  Number	= {3},
  Pages		= {206--212},
  Volume	= {2},
  Abstract	= {Changes in myocardial microstructure are important
		  components of the tissue response to infarction but are
		  difficult to resolve with current imaging techniques. A
		  novel technique, diffusion spectrum MRI tractography (DSI
		  tractography), was thus used to image myofiber architecture
		  in normal and infarcted myocardium. Unlike diffusion tensor
		  imaging, DSI tractography resolves multiple myofiber
		  populations per voxel, thus generating accurate 3D
		  tractograms, which we present in the myocardium for the
		  first time.DSI tractography was performed at 4.7 T in
		  excised rat hearts 3 weeks after left coronary artery
		  ligation (n=4) and in 4 age-matched controls. Fiber
		  architecture in the control hearts varied smoothly from
		  endocardium to epicardium, producing a symmetrical array of
		  crossing helical structures in which orthogonal myofibers
		  were separated by fibers with intermediate helix angles.
		  Fiber architecture in the infarcted hearts was severely
		  perturbed. The infarct boundary in all cases was highly
		  irregular and punctuated repeatedly by residual myofibers
		  extending from within the infarct to the border zones. In
		  all infarcts, longitudinal myofibers extending toward the
		  basal-anterior wall and transversely oriented myofibers
		  extending toward the septum lay in direct contact with each
		  other, forming nodes of orthogonal myofiber intersection or
		  contact.DSI tractography resolves 3D myofiber architecture
		  and reveals a complex network of orthogonal myofibers
		  within infarcted myocardium. Meshlike networks of
		  orthogonal myofibers in infarcted myocardium may resist
		  mechanical remodeling but also probably increase the risk
		  for lethal reentrant arrhythmias. DSI tractography thus
		  provides a new and important readout of tissue injury after
		  myocardial infarction.},
  DOI		= {10.1161/CIRCIMAGING.108.815050},
  Institution	= {Martinos Center for Biomedical Imaging, Department of
		  Radiology, Massachusetts General Hospital, Harvard Medical
		  School, Boston, Mass., USA. sosnovik@nmr.mgh.harvard.edu},
  Keywords	= {Animals; Diffusion Magnetic Resonance Imaging; Disease
		  Models, Animal; Image Interpretation, Computer-Assisted;
		  Imaging, Three-Dimensional; Myocardial Infarction,
		  pathology; Myocardium, pathology; Myofibrils, pathology;
		  Rats; Rats, Sprague-Dawley},
  Language	= {eng},
  medline-pst	= {ppublish},
  owner		= {stoeckc},
  pii		= {CIRCIMAGING.108.815050},
  pmid		= {19808594},
  timestamp	= {2015.07.24},
  URL		= {http://dx.doi.org/10.1161/CIRCIMAGING.108.815050}
}

@Article{	  sotelo_3d_2016,
  Title		= {{{3D}} Quantification of Wall Shear Stress and Oscillatory
		  Shear Index Using a Finite-Element Method in {{3D CINE
		  PC}}-{{MRI}} Data of the Thoracic Aorta},
  Author	= {Sotelo, Julio and Urbina, Jesus and Valverde, Israel and
		  Tejos, Cristian and Irarr{\'a}zaval, Pablo and Andia,
		  Marcelo E. and Uribe, Sergio and Hurtado, Daniel E.},
  Year		= {2016},
  Volume	= {35},
  Pages		= {1475--1487},
  Journal	= {IEEE transactions on medical imaging},
  Number	= {6}
}

@Article{	  sotelo_pressure_2015,
  langid	= {english},
  Title		= {Pressure Gradient Prediction in Aortic Coarctation Using a
		  Computational-Fluid-Dynamics Model: Validation against
		  Invasive Pressure Catheterization at Rest and
		  Pharmacological Stress},
  Volume	= {17},
  ISSN		= {1532-429X},
  URL		= {https://jcmr-online.biomedcentral.com/articles/10.1186/1532-429X-17-S1-Q78},
  DOI		= {10.1186/1532-429X-17-S1-Q78},
  ShortTitle	= {Pressure Gradient Prediction in Aortic Coarctation Using a
		  Computational-Fluid-Dynamics Model},
  Number	= {S1},
  JournalTitle	= {Journal of Cardiovascular Magnetic Resonance},
  URLDate	= {2019-01-29},
  Year		= {2015-12},
  Author	= {Sotelo, Julio A and Valverde, Israel and Beerbaum, Philipp
		  B and Greil, Gerald F and Schaeffter, Tobias and Razavi,
		  Reza and Hurtado, Daniel E and Uribe, Sergio and Figueroa,
		  Carlos A}
}

@Article{	  sotelo_three-dimensional_2018,
  Title		= {Three-Dimensional Quantification of Vorticity and Helicity
		  from {{3D}} Cine {{PC}}-{{MRI}} Using Finite-Element
		  Interpolations},
  Author	= {Sotelo, Julio and Urbina, Jes{\'u}s and Valverde, Israel
		  and Mura, Joaqu{\'i}n and Tejos, Cristi{\'a}n and
		  Irarrazaval, Pablo and Andia, Marcelo E. and Hurtado,
		  Daniel E. and Uribe, Sergio},
  Year		= {2018},
  Volume	= {79},
  Pages		= {541--553},
  Journal	= {Magnetic resonance in medicine},
  Number	= {1}
}

@Article{	  soulaimani-fortin-dhatt-ouellet-91,
  Author	= {Soula{\"\i}mani, A. and Fortin, M. and Dhatt, G. and
		  Ouellet, Y.},
  code		= {mob3},
  Journal	= {Comp. Meth. Appl. Mech. Engng},
  Pages		= {265-296},
  Title		= {Finite element simulation of two- and three dimensional
		  free surface flows},
  Volume	= {86},
  Year		= {1991}
}

###Article{	  soulaimani-fortin-dhatt-ouellet-91,
  Author	= {Soula{\"\i}mani, A. and Fortin, M. and Dhatt, G. and
		  Ouellet, Y.},
  code		= {mob3},
  Journal	= {Comp. Meth. Appl. Mech. Engng},
  Pages		= {265-296},
  Title		= {Finite element simulation of two- and three dimensional
		  free surface flows},
  Volume	= {86},
  Year		= {1991}
}

@Article{	  soulaimani-saad-98,
  Author	= {Soula{\" {\i}}mani, A. and Saad, Y.},
  code		= {mob4},
  Journal	= {Comput. Meth Appl. Mech Engrg.},
  Pages		= {79-106},
  Title		= {An arbitrary {Lagrangian-Eulerian} finite element method
		  for solving three-dimensional free surface flows},
  Volume	= {162},
  Year		= {1998}
}

###Article{	  soulaimani-saad-98,
  Author	= {Soula{\" {\i}}mani, A. and Saad, Y.},
  code		= {mob4},
  Journal	= {Comput. Meth Appl. Mech Engrg.},
  Pages		= {79-106},
  Title		= {An arbitrary {Lagrangian-Eulerian} finite element method
		  for solving three-dimensional free surface flows},
  Volume	= {162},
  Year		= {1998}
}

@Article{	  soyibou-murea-08,
  Author	= {Soyibou, S. and Murea, C.M.},
  DOI		= {DOI: 10.1016/j.cma.2008.07.010},
  ISSN		= {0045-7825},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Number	= {2},
  Pages		= {210 - 222},
  Title		= {A stable time advancing scheme for solving fluid-structure
		  interaction problem at small structural displacements},
  Volume	= {198},
  Year		= {2008}
}

###Article{	  soyibou-murea-08,
  Author	= {Soyibou, S. and Murea, C.M.},
  DOI		= {DOI: 10.1016/j.cma.2008.07.010},
  ISSN		= {0045-7825},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Number	= {2},
  Pages		= {210 - 222},
  Title		= {A stable time advancing scheme for solving fluid-structure
		  interaction problem at small structural displacements},
  Volume	= {198},
  Year		= {2008},
  bdsk-url-1	= {http://dx.doi.org/10.1016/j.cma.2008.07.010}
}

@Article{	  spilker2010tuning,
  Title		= {Tuning multidomain hemodynamic simulations to match
		  physiological measurements},
  Author	= {Spilker, Ryan L and Taylor, Charles A},
  Journal	= {Annals of biomedical engineering},
  Volume	= {38},
  Number	= {8},
  Pages		= {2635--2648},
  Year		= {2010},
  Publisher	= {Springer}
}

@Article{	  stalhand-09,
  Author	= {Stalhand, J.},
  Journal	= {Biomechanics and Modeling in Mechanobiology},
  Number	= {2},
  Pages		= {141-148},
  Title		= {Determination of human arterial wall parameters from
		  clinical data},
  Volume	= {8},
  Year		= {2009}
}

@Article{	  stein-benney-eal-00,
  Author	= {Stein, K. and Benney, R. and Kalro, V. and Tezduyar, T.E.
		  and Leonard, J. and Accorsi, M.},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Number	= {3--4},
  Pages		= {373--386},
  Title		= {Parachute fluid-structure interactions: {3-D}
		  computation},
  Volume	= {190},
  Year		= {2000}
}

###Article{	  stein-benney-eal-00,
  Author	= {Stein, K. and Benney, R. and Kalro, V. and Tezduyar, T.E.
		  and Leonard, J. and Accorsi, M.},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Number	= {3--4},
  Pages		= {373--386},
  Title		= {Parachute fluid-structure interactions: {3-D}
		  computation},
  Volume	= {190},
  Year		= {2000}
}

@Article{	  steinman_image-based_2002,
  Title		= {Image-Based Computational Fluid Dynamics Modeling in
		  Realistic Arterial Geometries},
  Volume	= {30},
  Number	= {4},
  JournalTitle	= {Annals of biomedical engineering},
  Year		= {2002},
  Pages		= {483--497},
  Author	= {Steinman, David A.}
}

@Article{	  steinman_reconstruction_2002,
  Title		= {Reconstruction of Carotid Bifurcation Hemodynamics and
		  Wall Thickness Using Computational Fluid Dynamics and
		  {{MRI}}},
  Volume	= {47},
  Number	= {1},
  JournalTitle	= {Magnetic Resonance in Medicine: An Official Journal of the
		  International Society for Magnetic Resonance in Medicine},
  Year		= {2002},
  Pages		= {149--159},
  Author	= {Steinman, David A. and Thomas, Jonathan B. and Ladak,
		  Hanif M. and Milner, Jaques S. and Rutt, Brian K. and
		  Spence, J. David}
}

@Article{	  stejskal1965jcp,
  Title		= {Use of Spin Echoes in a Pulsed Magnetic-Field Gradient to
		  Study Anisotropic, Restricted Diffusion and Flow},
  Author	= {Stejskal, E. O.},
  Journal	= {The Journal of Chemical Physics},
  Year		= {1965},
  Number	= {10},
  Pages		= {3597},
  Volume	= {43},
  DOI		= {10.1063/1.1696526},
  ISSN		= {00219606},
  Language	= {en},
  owner		= {david},
  timestamp	= {2015-05-12 18:30:54},
  URL		= {http://scitation.aip.org/content/aip/journal/jcp/43/10/10.1063/1.1696526},
  URLDate	= {2015-05-12}
}

@Article{	  stejskal1965spin,
  Author	= {Stejskal, EO and Tanner, JE},
  Title		= {Spin diffusion measurements: spin echoes in the presence
		  of a time-dependent field gradient},
  Journal	= {{The Journal of Chemical Physics}},
  Year		= {1965},
  Volume	= {42},
  Pages		= {288--292},
  Number	= {1},
  Keywords	= {DTMRI - general},
  Publisher	= {AIP Publishing}
}

@Article{	  stenberg09,
  Author	= "Juntunen, M. and Stenberg, R.",
  Title		= "{Nitsche's Method for General Boundary Conditions}",
  Journal	= {Math. Comp.},
  fjournal	= {Mathematics of Computation},
  Volume	= "78",
  Number	= "267",
  Pages		= "1353--1374",
  Year		= "2009"
}

###Article{	  stenberg09,
  Author	= "Juntunen, M. and Stenberg, R.",
  Title		= "{Nitsche's Method for General Boundary Conditions}",
  Journal	= {Math. Comp.},
  fjournal	= {Mathematics of Computation},
  Volume	= "78",
  Number	= "267",
  Pages		= "1353--1374",
  Year		= "2009"
}

@Article{	  stetter-78,
  Author	= {Stetter, H.J.},
  Journal	= {Numer. Math.},
  Pages		= {425--443},
  Title		= {The defect correction principle and discretization
		  methods},
  Volume	= {29},
  Year		= {1978}
}

###Article{	  stetter-78,
  Author	= {Stetter, H.J.},
  Journal	= {Numer. Math.},
  Pages		= {425--443},
  Title		= {The defect correction principle and discretization
		  methods},
  Volume	= {29},
  Year		= {1978}
}

@Article{	  stoeck2014dual,
  Title		= {Dual-Phase Cardiac Diffusion Tensor Imaging with Strain
		  Correction},
  Author	= {Stoeck, , Christian T. AND Kalinowska, , Aleksandra AND
		  von Deuster, , Constantin AND Harmer, , Jack AND Chan, ,
		  Rachel W. AND Niemann, , Markus AND Manka, , Robert AND
		  Atkinson, , David AND Sosnovik, , David E. AND Mekkaoui, ,
		  Choukri AND Kozerke, , Sebastian},
  Journal	= {PLoS ONE},
  Year		= {2014},
  Month		= {09},
  Number	= {9},
  Pages		= {e107159},
  Volume	= {9},
  Publisher	= {Public Library of Science}
}

@Article{	  stoeck2014po,
  Title		= {Dual-phase cardiac diffusion tensor imaging with strain
		  correction.},
  Author	= {Stoeck, Christian T. and Kalinowska, Aleksandra and {von
		  Deuster}, Constantin and Harmer, Jack and Chan, Rachel W.
		  and Niemann, Markus and Manka, Robert and Atkinson, David
		  and Sosnovik, David E. and Mekkaoui, Choukri and Kozerke,
		  Sebastian},
  Journal	= {PLoS One},
  Year		= {2014},
  Number	= {9},
  Pages		= {e107159},
  Volume	= {9},
  Abstract	= {In this work we present a dual-phase diffusion tensor
		  imaging (DTI) technique that incorporates a correction
		  scheme for the cardiac material strain, based on 3D
		  myocardial tagging.In vivo dual-phase cardiac DTI with a
		  stimulated echo approach and 3D tagging was performed in 10
		  healthy volunteers. The time course of material strain was
		  estimated from the tagging data and used to correct for
		  strain effects in the diffusion weighted acquisition. Mean
		  diffusivity, fractional anisotropy, helix, transverse and
		  sheet angles were calculated and compared between systole
		  and diastole, with and without strain correction. Data
		  acquired at the systolic sweet spot, where the effects of
		  strain are eliminated, served as a reference.The impact of
		  strain correction on helix angle was small. However, large
		  differences were observed in the transverse and sheet angle
		  values, with and without strain correction. The standard
		  deviation of systolic transverse angles was significantly
		  reduced from 35.9Â±3. 9Â° to 27.8Â°Â±3.5Â° (p<0.001) upon
		  strain-correction indicating more coherent fiber tracks
		  after correction. Myocyte aggregate structure was aligned
		  more longitudinally in systole compared to diastole as
		  reflected by an increased transmural range of helix angles
		  (71.8Â°Â±3.9Â° systole vs. 55.6Â°Â±5.6Â°, p<0.001
		  diastole). While diastolic sheet angle histograms had
		  dominant counts at high sheet angle values, systolic
		  histograms showed lower sheet angle values indicating a
		  reorientation of myocyte sheets during contraction.An
		  approach for dual-phase cardiac DTI with correction for
		  material strain has been successfully implemented. This
		  technique allows assessing dynamic changes in myofiber
		  architecture between systole and diastole, and emphasizes
		  the need for strain correction when sheet architecture in
		  the heart is imaged with a stimulated echo approach.},
  DOI		= {10.1371/journal.pone.0107159},
  Institution	= {Institute for Biomedical Engineering, University and ETH
		  Zurich, Zurich, Switzerland; Imaging Sciences and
		  Biomedical Engineering, King's College London, London,
		  United Kingdom.},
  Language	= {eng},
  medline-pst	= {epublish},
  owner		= {stoeckc},
  pii		= {PONE-D-14-20521},
  pmid		= {25191900},
  timestamp	= {2015.07.24},
  URL		= {http://dx.doi.org/10.1371/journal.pone.0107159}
}

@Article{	  stoeck2015mrm,
  Title		= {Second-order motion-compensated spin echo diffusion tensor
		  imaging of the human heart.},
  Author	= {Stoeck, Christian T. and {von Deuster}, Constantin and
		  Genet, Martin and Atkinson, David and Kozerke, Sebastian},
  Journal	= {Magn Reson Med},
  Year		= {2015},
  Month		= {May},
  Abstract	= {Myocardial microstructure has been challenging to probe in
		  vivo. Spin echo-based diffusion-weighted sequences allow
		  for single-shot acquisitions but are highly sensitive to
		  cardiac motion. In this study, the use of second-order
		  motion-compensated diffusion encoding was compared with
		  first-order motion-compensated diffusion-weighted imaging
		  during systolic contraction of the heart.First- and
		  second-order motion-compensated diffusion encoding
		  gradients were incorporated into a triggered single-shot
		  spin echo sequence. The effect of contractile motion on the
		  apparent diffusion coefficients and tensor orientations was
		  investigated in vivo from basal to apical level of the
		  heart.Second-order motion compensation was found to
		  increase the range of systolic trigger delays from
		  30\%-55\% to 15\%-77\% peak systole at the apex and from
		  25\%-50\% to 15\%-79\% peak systole at the base. Diffusion
		  tensor analysis yielded more physiological transmural
		  distributions when using second-order motion-compensated
		  diffusion tensor imaging.Higher-order motion-compensated
		  diffusion encoding decreases the sensitivity to cardiac
		  motion, thereby enabling cardiac DTI over a wider range of
		  time points during systolic contraction of the heart. Magn
		  Reson Med, 2015. Â© 2015 Wiley Periodicals, Inc.},
  DOI		= {10.1002/mrm.25784},
  Institution	= {Division of Imaging Sciences and Biomedical Engineering,
		  King's College London, London, United Kingdom.},
  Language	= {eng},
  medline-pst	= {aheadofprint},
  owner		= {stoeckc},
  pmid		= {26033456},
  timestamp	= {2015.07.24},
  URL		= {http://dx.doi.org/10.1002/mrm.25784}
}

@Article{	  stoeck2015second,
  Author	= {Stoeck, Christian T. and {von Deuster}, Constantin and
		  Genet, Martin and Atkinson, David and Kozerke, Sebastian},
  Title		= {Second-order motion-compensated spin echo diffusion tensor
		  imaging of the human heart.},
  Journal	= {Magn Reson Med},
  Year		= {2015},
  Month		= {May},
  DOI		= {10.1002/mrm.25784},
  Institution	= {Division of Imaging Sciences and Biomedical Engineering,
		  King's College London, London, United Kingdom.},
  Keywords	= {DTMRI - cardiac in-vivo},
  Language	= {eng},
  medline-pst	= {aheadofprint},
  owner		= {andreas},
  pmid		= {26033456},
  timestamp	= {2015.07.07}
}

@Book{		  stoker-58,
  Author	= {Stoker, J.J.},
  Publisher	= {Wiley},
  Title		= {Water waves, the mathematical theory with applications},
  Year		= {1958}
}

###Book{	  stoker-58,
  Author	= {Stoker, J.J.},
  Publisher	= {Wiley},
  Title		= {Water waves, the mathematical theory with applications},
  Year		= {1958}
}

@PhdThesis{	  stoufflet-84,
  Author	= {B. Stoufflet},
  Month		= {mars},
  School	= {universit{\'e} de Paris VI},
  Title		= {R{\'e}solution num{\'e}rique des {\'e}quations d'Euler des
		  fluides parfaits compressibles par des sch{\'e}mas
		  implicites en {\'e}l{\'e}ments finis},
  Year		= {1984}
}

###PhdThesis{	  stoufflet-84,
  Author	= {B. Stoufflet},
  Month		= {mars},
  School	= {universit{\'e} de Paris VI},
  Title		= {R{\'e}solution num{\'e}rique des {\'e}quations d'Euler des
		  fluides parfaits compressibles par des sch{\'e}mas
		  implicites en {\'e}l{\'e}ments finis},
  Year		= {1984}
}

@Article{	  stout_2018_2018,
  Title		= {2018 {{AHA}}/{{ACC Guideline}} for the {{Management}} of
		  {{Adults With Congenital Heart Disease}}},
  Author	= {Stout, Karen K. and Daniels, Curt J. and Aboulhosn, Jamil
		  A. and Bozkurt, Biykem and Broberg, Craig S. and Colman,
		  Jack M. and Crumb, Stephen R. and Dearani, Joseph A. and
		  Fuller, Stephanie and Gurvitz, Michelle and Khairy, Paul
		  and Landzberg, Michael J. and Saidi, Arwa and Valente, Anne
		  Marie and Van Hare, George F.},
  Year		= {2018},
  Month		= aug,
  ISSN		= {07351097},
  DOI		= {10.1016/j.jacc.2018.08.1029},
  Journal	= {Journal of the American College of Cardiology},
  Language	= {en}
}

@Article{	  streeter1966engineering,
  Author	= {Streeter, Daniel D and Bassett, David L},
  Title		= {An engineering analysis of myocardial fiber orientation in
		  pig's left ventricle in systole},
  Journal	= {The Anatomical Record},
  Year		= {1966},
  Volume	= {155},
  Pages		= {503--511},
  Number	= {4},
  Publisher	= {Wiley Online Library}
}

@Article{	  streeter1969,
  Author	= {Streeter, D. D. and Spotnitz, H. M. and Patel, D. P. and
		  Ross, J. and Sonnenblick, E. H.},
  Title		= {Fiber Orientation in the Canine Left Ventricle during
		  Diastole and Systole},
  Volume	= {24},
  Number	= {3},
  Pages		= {339-347},
  Year		= {1969},
  Journal	= {Circulation Research}
}

@Article{	  streeter1973engineering2,
  Author	= {Streeter, Daniel D. and Hanna, William T.},
  Title		= {Engineering Mechanics for Successive States in Canine Left
		  Ventricular Myocardium: II. Fiber Angle and Sarcomere
		  Length},
  Journal	= {Circulation Research},
  Year		= {1973},
  Volume	= {33},
  Pages		= {656-664},
  Number	= {6},
  DOI		= {10.1161/01.RES.33.6.656},
  EPrint	= {http://circres.ahajournals.org/content/33/6/656.full.pdf+html},
  URL		= {http://circres.ahajournals.org/content/33/6/656.abstract}
}

@Article{	  streeter1979,
  Author	= {Streeter, D.D.},
  Title		= {Gross morphology and fiber geometry of the heart},
  Journal	= {Handbook of Physiology},
  Publisher	= {Williams & Wilkins},
  Year		= {1979},
  Pages		= {61-112}
}

@InCollection{	  sugihara-seki_fundamentals_2016,
  Location	= {{Tokyo}},
  Title		= {Fundamentals of {{Vascular Bio}}-Fluid and {{Solid
		  Mechanics}}},
  ISBN		= {978-4-431-54800-3},
  BookTitle	= {Vascular {{Engineering}}},
  Publisher	= {{Springer}},
  Year		= {2016},
  Pages		= {13-45},
  Author	= {Sugihara-Seki, Masako and Yamada, Hiroshi}
}

@Article{	  sulaiman_vitro_2008,
  Title		= {In Vitro Non-Rigid Life-Size Model of Aortic Arch Aneurysm
		  for Endovascular Prosthesis Assessment},
  Author	= {Sulaiman, Abdulrazzaq and Boussel, Lo{\^i}c and Taconnet,
		  Fr{\'e}d{\'e}ric and Serfaty, Jean Michel and Alsaid, Hasan
		  and Attia, Cherif and Huet, Laurent and Douek, Philippe},
  Year		= {2008},
  Volume	= {33},
  Pages		= {53--57},
  Journal	= {European Journal of Cardio-Thoracic Surgery},
  Number	= {1}
}

@Book{		  sun-94,
  Author	= {Sun, N.Z.},
  Publisher	= {Kluwer},
  Title		= {Inverse problems in groundwater modeling},
  Year		= {1994}
}

###Book{	  sun-94,
  Author	= {Sun, N.Z.},
  Publisher	= {Kluwer},
  Title		= {Inverse problems in groundwater modeling},
  Year		= {1994}
}

@Article{	  sun-sun-elimelech-ryan-01,
  Annote	= {inverse problem, bacteria},
  Author	= {Sun, N. and Sun, N.-Z. and Elimelech, M. and Ryan, J. N.},
  code		= {por19},
  Journal	= {Water resources research},
  Number	= {2},
  Pages		= {209-222},
  Title		= {Sensitivity analysis and parameter identifiability for
		  colloid transport in geochemically heterogeneous porous
		  media},
  Volume	= {37},
  Year		= {2001}
}

###Article{	  sun-sun-elimelech-ryan-01,
  Annote	= {inverse problem, bacteria},
  Author	= {Sun, N. and Sun, N.-Z. and Elimelech, M. and Ryan, J. N.},
  code		= {por19},
  Journal	= {Water resources research},
  Number	= {2},
  Pages		= {209-222},
  Title		= {Sensitivity analysis and parameter identifiability for
		  colloid transport in geochemically heterogeneous porous
		  media},
  Volume	= {37},
  Year		= {2001}
}

@InProceedings{	  sundar2006estimating,
  Title		= {Estimating myocardial fiber orientations by template
		  warping},
  Author	= {Sundar, Hari and Shen, Dinggang and Biros, George and
		  Litt, Harold and Davatzikos, Christos},
  BookTitle	= {Biomedical Imaging: Nano to Macro, 2006. 3rd IEEE
		  International Symposium on},
  Pages		= {73--76},
  Year		= {2006},
  Organization	= {IEEE}
}

@Article{	  sutton1997circ,
  Title		= {Cardiovascular Death and Left Ventricular Remodeling Two
		  Years After Myocardial Infarction: Baseline Predictors and
		  Impact of Long-term Use of Captopril: Information From the
		  Survival and Ventricular Enlargement (SAVE) Trial},
  Author	= {Sutton, Martin St. John and Pfeffer, Marc A. and Moye,
		  Lemuel and Plappert, Ted and Rouleau, Jean L. and Lamas,
		  Gervasio and Rouleau, Jacques and Parker, John O. and
		  Arnold, Malcolm O. and Sussex, Bruce and Braunwald, Eugene
		  and for the SAVE Investigators},
  Journal	= {Circulation},
  Year		= {1997},
  Number	= {10},
  Pages		= {3294-3299},
  Volume	= {96},
  Abstract	= {Background We quantified cardiovascular death and/or left
		  ventricular (LV) dilatation in patients from the SAVE trial
		  to determine whether dilatation continued beyond 1 year,
		  whether ACE inhibitor therapy attenuated late LV
		  dilatation, and whether any baseline descriptors predicted
		  late dilatation.Methods and Results Two-dimensional
		  echocardiograms were obtained in 512 patients at 11Â±3 days
		  and 1 and 2 years postinfarction to assess LV size,
		  percentage of the LV that was akinetic/dyskinetic (%AD),
		  and LV shape index. LV function was assessed by
		  radionuclide ejection fraction. Two hundred sixty-three
		  patients (51.4%) sustained cardiovascular death and/or LV
		  diastolic dilatation; 279 (54.5%) had cardiovascular death
		  and/or systolic dilatation. In 373 patients with serial
		  echocardiograms, LV end-diastolic and end-systolic sizes
		  increased progressively from baseline to 2 years (both
		  P<.01). More patients with LV dilatation had a decrease in
		  ejection fraction: 24.8% versus 6.8% (P<. 001) (diastole)
		  and 25.7% versus 5.3% (P<.001) (systole). Captopril
		  attenuated diastolic LV dilatation at 2 years (P=.048), but
		  this effect was carried over from the first year of therapy
		  because changes in LV size with captopril beyond 1 year
		  were similar to those with placebo. Predictors of
		  cardiovascular death and/or dilatation were age (P=.023),
		  prior infarction (P<.001), lower ejection fraction
		  (P<.001), angina (P=.007), heart failure (P=.002), LV size
		  (P<.001), and infarct size (%AD) (P<.001).Conclusions
		  Cardiovascular death and/or LV dilatation occurred in >50%
		  of patients by 2 years. LV dilatation is progressive,
		  associated with chamber distortion and deteriorating
		  function that is unaffected by captopril beyond 1 year.},
  comments	= {no pdf available... see
		  http://circ.ahajournals.org/content/96/10/3294.full},
  DOI		= {10.1161/01.CIR.96.10.3294},
  timestamp	= {2015/09/14},
  URL		= {http://circ.ahajournals.org/content/96/10/3294.abstract}
}

@Article{	  sutton2000circ,
  Title		= {Left Ventricular Remodeling After Myocardial Infarction:
		  Pathophysiology and Therapy},
  Author	= {Sutton, Martin G. St. John and Sharpe, Norman},
  Journal	= {Circulation},
  Year		= {2000},
  Number	= {25},
  Pages		= {2981-2988},
  Volume	= {101},
  DOI		= {10.1161/01.CIR.101.25.2981},
  EPrint	= {http://circ.ahajournals.org/content/101/25/2981.full.pdf+html},
  File		= {sutton00.pdf:sutton00.pdf:PDF},
  timestamp	= {2014/09/17},
  URL		= {http://circ.ahajournals.org/content/101/25/2981.short}
}

@Article{	  svihlova_determination_2016,
  Title		= {Determination of Pressure Data from Velocity Data with a
		  View toward Its Application in Cardiovascular Mechanics.
		  {{Part}} 1. {{Theoretical}} Considerations},
  ISSN		= {0020-7225},
  URL		= {http://www.sciencedirect.com/science/article/pii/S0020722515001858},
  DOI		= {10.1016/j.ijengsci.2015.11.002},
  Abstract	= {The non-invasive determination of the pressure (mean
		  normal stress) in a flowing fluid has ramifications in a
		  variety of important problems: the flow of blood in blood
		  vessels, flows taking place in inaccessible locations in
		  complex internal geometries that occur in mechanical
		  systems, etc. In this paper we discuss a rigorous new
		  mathematical procedure for the determination of the
		  pressure (mean normal stress) field, from data for the
		  velocity field that can be obtained through imaging
		  procedures such as 4D magnetic resonance imaging or
		  echocardiography. We then use the procedure to demonstrate
		  its efficacy by considering flows in an idealized geometry
		  with a symmetric and asymmetric obstruction. We delineate
		  the superiority of the method with regard to the methods
		  that are currently in place. In Part 2 of this two part
		  paper, we study the loss of pressure and the dissipation
		  that occurs due to the flow of blood across a diseased
		  valve (the pressure loss being an important indicator of
		  the extent of the valvular disease) as well as the flow
		  taking place in a realistic cerebral aneurysm.},
  JournalTitle	= {International Journal of Engineering Science},
  ShortJournal	= {International Journal of Engineering Science},
  URLDate	= {2016-05-23},
  Year		= {2016},
  Author = {Švihlová, H. and Hron, J. and Málek, J. and Rajagopal, K. R. and Rajagopal, K.}
}

@Article{	  swanson1974dimensions,
  Title		= {Dimensions and geometric relationships of the human aortic
		  value as a function of pressure},
  Author	= {Swanson, W. and Clark, R.},
  Journal	= {Circulation research},
  Volume	= {35},
  Number	= {6},
  Pages		= {871--882},
  Year		= {1974},
  Publisher	= {Am Heart Assoc}
}

@Article{	  swynghedaww1999pr,
  Title		= {Molecular Mechanisms of Myocardial Remodeling},
  Author	= {Swynghedaww, Bernard},
  Journal	= {Physiological Reviews},
  Year		= {1999},
  Number	= {1},
  Pages		= {215--262},
  Volume	= {79},
  Abstract	= {Swynghedauw, Bernard. Molecular Mechanisms of Myocardial
		  Remodeling. Physiol. Rev. 79: 215{\textendash}262, 1999.
		  {\textemdash}
		  {\textquotedblleft}Remodeling{\textquotedblright} implies
		  changes that result in rearrangement of normally existing
		  structures. This review focuses only on permanent
		  modifications in relation to clinical dysfunction in
		  cardiac remodeling (CR) secondary to myocardial infarction
		  (MI) and/or arterial hypertension and includes a special
		  section on the senescent heart, since CR is mainly a
		  disease of the elderly. From a biological point of view, CR
		  is determined by 1 ) the general process of adaptation
		  which allows both the myocyte and the collagen network to
		  adapt to new working conditions; 2) ventricular fibrosis,
		  i.e., increased collagen concentration, which is
		  multifactorial and caused by senescence, ischemia, various
		  hormones, and/or inflammatory processes; 3) cell death, a
		  parameter linked to fibrosis, which is usually due to
		  necrosis and apoptosis and occurs in nearly all models of
		  CR. The process of adaptation is associated with various
		  changes in genetic expression, including a general
		  activation that causes hypertrophy, isogenic shifts which
		  result in the appearance of a slow isomyosin, and a new
		  Na+-K+-ATPase with a low affinity for sodium, reactivation
		  of genes encoding for atrial natriuretic fator and the
		  renin-angiotensin system, and a diminished concentration of
		  sarcoplasmic reticulum Ca2+-ATPase, ?-adrenergic receptors,
		  and the potassium channel responsible for transient outward
		  current. From a clinical point of view, fibrosis is for the
		  moment a major marker for cardiac failure and a crucial
		  determinant of myocardial heterogeneity, increasing
		  diastolic stiffness, and the propensity for reentry
		  arrhythmias. In addition, systolic dysfunction is
		  facilitated by slowing of the calcium transient and the
		  downregulation of the entire adrenergic system.
		  Modifications of intracellular calcium movements are the
		  main determinants of the triggered activity and
		  automaticity that cause arrhythmias and alterations in
		  relaxation.},
  File		= {swynghedaww99.pdf:swynghedaww99.pdf:PDF},
  ISSN		= {0031-9333},
  Publisher	= {American Physiological Society},
  timestamp	= {2015/09/13}
}

###InCollection{	  tada_hemodynamics_2016,
  Location	= {{Tokyo}},
  Title		= {Hemodynamics in {{Physio}}- and {{Pathological Vessels}}},
  ISBN		= {978-4-431-54800-3},
  BookTitle	= {Vascular {{Engineering}}},
  Publisher	= {{Springer}},
  Year		= {2016},
  Pages		= {69-98},
  Author	= {Tada, Shigeru and Tarbell, John M.}
}

@Article{	  taieb-moudni-benchaa-2002,
  Author	= {Taieb, J. and Moudni, T. and Foltzer, E. and et al.},
  Journal	= {Annales de cardiologie et d'ang{\'e}iologie},
  Pages		= {289-295},
  Title		= {Resynchronisation du coeur d{\'e}faillant par la
		  stimulation},
  Volume	= {51},
  Year		= {2002}
}

###Article{	  taieb-moudni-benchaa-2002,
  Author	= {Taieb, J. and Moudni, T. and Foltzer, E. and et al.},
  Journal	= {Annales de cardiologie et d'ang{\'e}iologie},
  Pages		= {289-295},
  Title		= {Resynchronisation du coeur d{\'e}faillant par la
		  stimulation},
  Volume	= {51},
  Year		= {2002}
}

###Article{	  taieb-moudni-benchaa-2002,
  Author	= {Taieb, J. and Moudni, T. and Foltzer, E. and et al.},
  Journal	= {Annales de cardiologie et d'ang{\'e}iologie},
  Pages		= {289-295},
  Title		= {Resynchronisation du coeur d{\'e}faillant par la
		  stimulation},
  Volume	= {51},
  Year		= {2002}
}

###Article{	  taieb-moudni-benchaa-2002,
  Author	= {Taieb, J. and Moudni, T. and Foltzer, E. and et al.},
  Journal	= {Annales de cardiologie et d'ang{\'e}iologie},
  Pages		= {289-295},
  Title		= {Resynchronisation du coeur d{\'e}faillant par la
		  stimulation},
  Volume	= {51},
  Year		= {2002}
}

@Article{	  talagrand_assimilation_1997,
  Title		= {Assimilation of Observations, an Introduction (Gtspecial
		  Issueltdata Assimilation in Meteology and Oceanography:
		  {{Theory}} and Practice)},
  Volume	= {75},
  ShortTitle	= {Assimilation of Observations, an Introduction (Gtspecial
		  Issueltdata Assimilation in Meteology and Oceanography},
  Issue		= {1B},
  JournalTitle	= {Journal of the Meteorological Society of Japan. Ser. II},
  Year		= {1997},
  Pages		= {191--209},
  Author	= {Talagrand, Olivier}
}

@Book{		  talktalk,
  Title		= {{Circulatory system}},
  Author	= {{Talk Talk Encyclopaedia}},
  Year		= {2011}
}

###Book{	  talktalk,
  Title		= {{Circulatory system}},
  Author	= {{Talk Talk Encyclopaedia}},
  Address	= {\url{http://www.talktalk.co.uk/reference/encyclopaedia/hutchinson/m0006777.html}},
  Year		= {2011}
}

@Article{	  tam-69,
  Annote	= {porous, darcy},
  Author	= {Tam, C. K. W.},
  code		= {cel14},
  Journal	= {J. Fluid Mech.},
  Pages		= {537-546},
  Title		= {The drag on a cloud of sperical particles in low Reynolds
		  number flow},
  Volume	= {38},
  Year		= {1969}
}

###Article{	  tam-69,
  Annote	= {porous, darcy},
  Author	= {Tam, C. K. W.},
  code		= {cel14},
  Journal	= {J. Fluid Mech.},
  Pages		= {537-546},
  Title		= {The drag on a cloud of sperical particles in low Reynolds
		  number flow},
  Volume	= {38},
  Year		= {1969}
}

@Article{	  tan-et-al-08,
  Author	= {Tang, D. and Yang, C. and Mondal, S. and Liu, F. and
		  Canton, G. and Hatsukami, T.S. and Yuan, C.},
  Journal	= {J Biomech.},
  Number	= {4},
  Pages		= {727--736},
  Title		= {A negative correlation between human carotid
		  atherosclerotic plaque progression and plaque wall stress:
		  in vivo {M}{R}{I}-based 2{D}/3{D} {F}{S}{I} models},
  Volume	= {41},
  Year		= {2008}
}

###Article{	  tan-et-al-08,
  Author	= {Tang, D. and Yang, C. and Mondal, S. and Liu, F. and
		  Canton, G. and Hatsukami, T.S. and Yuan, C.},
  Journal	= {J Biomech.},
  Number	= {4},
  Pages		= {727--736},
  Title		= {A negative correlation between human carotid
		  atherosclerotic plaque progression and plaque wall stress:
		  in vivo {M}{R}{I}-based 2{D}/3{D} {F}{S}{I} models},
  Volume	= {41},
  Year		= {2008}
}

@Article{	  tan_comparison_2012,
  langid	= {english},
  Title		= {Comparison of {{Aortic Flow Patterns Before}} and {{After
		  Transcatheter Aortic Valve Implantation}}},
  Volume	= {3},
  ISSN		= {1869-4098},
  URL		= {https://doi.org/10.1007/s13239-011-0073-3},
  DOI		= {10.1007/s13239-011-0073-3},
  Abstract	= {Little is known of the likely changes in blood flow
		  velocity profiles and aortic wall shear stress (WSS)
		  following transcatheter aortic valve implantation (TAVI).
		  The objective of this study was to investigate the effects
		  of TAVI on flow patterns in the thoracic aorta by using
		  cardiovascular magnetic resonance imaging (CMR) and
		  computational fluid dynamics (CFD). An elderly patient with
		  aortic stenosis was examined using MRI pre- and post-TAVI,
		  and CFD simulations were carried out incorporating
		  MRI-derived patient-specific anatomy and upstream flow
		  conditions. Pre-TAVI velocity profiles demonstrated the
		  highly disturbed turbulent flow and jet impacting the wall
		  of the arch owing to the partial opening of the stenosed
		  aortic valve, with likely pathological effects. In the
		  Post-TAVI aorta, velocity profiles were similar to those of
		  healthy aortas with spatially more uniform WSS and lower
		  turbulence levels, demonstrating the favourable effects of
		  the TAVI procedure in restoring normal aortic flow. This
		  study has shown both the effectiveness of TAVI on an
		  individual patient and the advantage of the combined CMR
		  and CFD method for a comprehensive patient-specific
		  assessment of pre- and post-TAVI aortic flow patterns and
		  WSS over CMR alone.},
  Number	= {1},
  JournalTitle	= {Cardiovascular Engineering and Technology},
  ShortJournal	= {Cardiovasc Eng Tech},
  URLDate	= {2019-02-21},
  Year		= {2012-03-01},
  Pages		= {123-135},
  Author	= {Tan, F. P. P. and Xu, X. Y. and Torii, R. and Wood, N. B.
		  and Delahunty, N. and Mullen, M. and Moat, N. and
		  Mohiaddin, R.}
}

@Article{	  tan_doppler_2005,
  Title		= {Doppler Echocardiographic Profile and Indexes in the
		  Evaluation of Aortic Coarctation in Patients before and
		  after Stenting},
  Volume	= {46},
  Number	= {6},
  JournalTitle	= {Journal of the American College of Cardiology},
  Year		= {2005},
  Pages		= {1045--1053},
  Author	= {Tan, Ju-Le and Babu-Narayan, Sonya V. and Henein, Michael
		  Y. and Mullen, Michael and Li, Wei}
}

@Article{	  tanaka,
  Author	= {Tanaka, N.},
  Journal	= {Com. Par. Diff. Eq.},
  Number	= {1-2},
  Pages		= {41-81},
  Title		= {Global existence of two-phase non-homogeneous viscous
		  incompressible fluid flow},
  Volume	= {18},
  Year		= 1993
}

###Article{	  tanaka,
  Author	= {Tanaka, N.},
  Journal	= {Com. Par. Diff. Eq.},
  Number	= {1-2},
  Pages		= {41-81},
  Title		= {Global existence of two-phase non-homogeneous viscous
		  incompressible fluid flow},
  Volume	= {18},
  Year		= 1993
}

@Article{	  tang-yang-ku-99,
  Author	= {Tang, D. and Yang, J. and Yang, C. and Ku, D.N.},
  code		= {fsi11},
  Journal	= {J. Biomech. Engng.},
  Pages		= {494-501},
  Title		= {A nonlinear axisymmetric model with fluid-wall
		  interactions for steady viscous flow in stenotic elastic
		  tubes},
  Volume	= {121},
  Year		= {1999}
}

###Article{	  tang-yang-ku-99,
  Author	= {Tang, D. and Yang, J. and Yang, C. and Ku, D.N.},
  code		= {fsi11},
  Journal	= {J. Biomech. Engng.},
  Pages		= {494-501},
  Title		= {A nonlinear axisymmetric model with fluid-wall
		  interactions for steady viscous flow in stenotic elastic
		  tubes},
  Volume	= {121},
  Year		= {1999}
}

@Article{	  tani,
  Author	= {Tani, A. and Tanaka, N.},
  Journal	= {Arch. Rat. Mech. Anal.},
  Number	= {4},
  Pages		= {303-314},
  Title		= {Large-time existence of surface waves in incompressible
		  viscous fluids with or without surface tension},
  Volume	= {130},
  Year		= {1995}
}

###Article{	  tani,
  Author	= {Tani, A. and Tanaka, N.},
  Journal	= {Arch. Rat. Mech. Anal.},
  Number	= {4},
  Pages		= {303-314},
  Title		= {Large-time existence of surface waves in incompressible
		  viscous fluids with or without surface tension},
  Volume	= {130},
  Year		= {1995}
}

@Article{	  tani1,
  Author	= {Tani, A.},
  Journal	= {Lect. Notes in Num. Appl. Anal.},
  Pages		= {153-185},
  Title		= {Global existence of incompressible viscous capillary fluid
		  flow in a field of external forces},
  Volume	= {11},
  Year		= {1991}
}

###Article{	  tani1,
  Author	= {Tani, A.},
  Journal	= {Lect. Notes in Num. Appl. Anal.},
  Pages		= {153-185},
  Title		= {Global existence of incompressible viscous capillary fluid
		  flow in a field of external forces},
  Volume	= {11},
  Year		= {1991}
}

@Article{	  taouli2007ajr,
  Title		= {Diffusion-weighted {MRI} for quantification of liver
		  fibrosis: preliminary experience},
  Author	= {Taouli, Bachir and Tolia, Anuj J and Losada, Mariela and
		  Babb, James S and Chan, Edwin S and Bannan, Michael A and
		  Tobias, Hillel},
  Journal	= {American Journal of Roentgenology},
  Year		= {2007},
  Number	= {4},
  Pages		= {799--806},
  Volume	= {189},
  Publisher	= {Am Roentgen Ray Soc}
}

@Book{		  taylor-96,
  Author	= {Taylor, M.E.},
  Publisher	= {Springer},
  Title		= {Partial Differential Equations III. Nonlinear equations},
  Year		= {1996}
}

###Book{	  taylor-96,
  Author	= {Taylor, M.E.},
  Publisher	= {Springer},
  Title		= {Partial Differential Equations III. Nonlinear equations},
  Year		= {1996}
}

@Article{	  taylor-hughes-zarins-98,
  Author	= {Taylor, C.A. and Hughes, T. J. R. and Zarins, C. K.},
  Journal	= {Comput. Meth. Appl. Mech. Engrg},
  Pages		= {155--196},
  Title		= {Finite element modeling of blood flow in arteries},
  Volume	= {158},
  Year		= {1998}
}

###Article{	  taylor-hughes-zarins-98,
  Author	= {Taylor, C.A. and Hughes, T. J. R. and Zarins, C. K.},
  Journal	= {Comput. Meth. Appl. Mech. Engrg},
  Pages		= {155--196},
  Title		= {Finite element modeling of blood flow in arteries},
  Volume	= {158},
  Year		= {1998}
}

@Article{	  taylor2013ffr,
  Title		= {Computational fluid dynamics applied to cardiac computed
		  tomography for noninvasive quantification of fractional
		  flow reserve: scientific basis},
  Author	= {Taylor, Charles A and Fonte, Timothy A and Min, James K},
  Journal	= {Journal of the American College of Cardiology},
  Volume	= {61},
  Number	= {22},
  Pages		= {2233--2241},
  Year		= {2013},
  Publisher	= {Am Coll Cardio Found}
}

@Article{	  taylor_experimental_2004,
  langid	= {english},
  Title		= {Experimental and {{Computational Methods}} in
		  {{Cardiovascular Fluid Mechanics}}},
  Volume	= {36},
  ISSN		= {0066-4189, 1545-4479},
  URL		= {http://arjournals.annualreviews.org/doi/abs/10.1146%2Fannurev.fluid.36.050802.121944},
  DOI		= {10.1146/annurev.fluid.36.050802.121944},
  Number	= {1},
  JournalTitle	= {Annual Review of Fluid Mechanics},
  URLDate	= {2019-02-21},
  Year		= {2004-01},
  Pages		= {197-231},
  Author	= {Taylor, Charles A. and Draney, Mary T.}
}

@Article{	  taylor_image-based_2010,
  Title		= {Image-Based Modeling of Blood Flow and Vessel Wall
		  Dynamics: Applications, Methods and Future Directions},
  Volume	= {38},
  ShortTitle	= {Image-Based Modeling of Blood Flow and Vessel Wall
		  Dynamics},
  Number	= {3},
  JournalTitle	= {Annals of biomedical engineering},
  Year		= {2010},
  Pages		= {1188--1203},
  Author	= {Taylor, Charles A. and Steinman, David A.}
}

@Article{	  taylor_predictive_1999,
  langid	= {english},
  Title		= {Predictive Medicine: Computational Techniques in
		  Therapeutic Decision-Making},
  Volume	= {4},
  ISSN		= {1092-9088},
  DOI		= {10.1002/(SICI)1097-0150(1999)4:5<231::AID-IGS1>3.0.CO;2-Z},
  ShortTitle	= {Predictive Medicine},
  Abstract	= {The current paradigm for surgery planning for the
		  treatment of cardiovascular disease relies exclusively on
		  diagnostic imaging data to define the present state of the
		  patient, empirical data to evaluate the efficacy of prior
		  treatments for similar patients, and the judgement of the
		  surgeon to decide on a preferred treatment. The individual
		  variability and inherent complexity of human biological
		  systems is such that diagnostic imaging and empirical data
		  alone are insufficient to predict the outcome of a given
		  treatment for an individual patient. We propose a new
		  paradigm of predictive medicine in which the physician
		  utilizes computational tools to construct and evaluate a
		  combined anatomic/physiologic model to predict the outcome
		  of alternative treatment plans for an individual patient.
		  The predictive medicine paradigm is implemented in a
		  software system developed for Simulation-Based Medical
		  Planning. This system provides an integrated set of tools
		  to test hypotheses regarding the effect of alternate
		  treatment plans on blood flow in the cardiovascular system
		  of an individual patient. It combines an Internet-based
		  user interface developed using Java and VRML, image
		  segmentation, geometric solid modeling, automatic finite
		  element mesh generation, computational fluid dynamics, and
		  scientific visualization techniques. This system is applied
		  to the evaluation of alternate, patient-specific treatments
		  for a case of lower extremity occlusive cardiovascular
		  disease.},
  Number	= {5},
  JournalTitle	= {Computer Aided Surgery: Official Journal of the
		  International Society for Computer Aided Surgery},
  ShortJournal	= {Comput. Aided Surg.},
  Year		= {1999},
  Pages		= {231-247},
  Author	= {Taylor, C. A. and Draney, M. T. and Ku, J. P. and Parker,
		  D. and Steele, B. N. and Wang, K. and Zarins, C. K.},
  EPrintType	= {pmid},
  EPrint	= {10581521}
}

@Article{	  temam-68,
  Author	= {Temam, R.},
  Journal	= {Bull. Soc. Math. France},
  Pages		= {115--152},
  Title		= {Une m{\'e}thode d'approximation de la solution des
		  {\'e}quations de {N}avier-{S}tokes},
  Volume	= {96},
  Year		= {1968}
}

###Article{	  temam-68,
  Author	= {Temam, R.},
  Journal	= {Bull. Soc. Math. France},
  Pages		= {115--152},
  Title		= {Une m{\'e}thode d'approximation de la solution des
		  {\'e}quations de {N}avier-{S}tokes},
  Volume	= {96},
  Year		= {1968}
}

@Book{		  temam-79,
  Author	= {Temam, R.},
  Publisher	= {North-Holland},
  Title		= {{Navier-Stokes Equations, Theory and Numerical Analysis}},
  Year		= {1979}
}

###Book{	  temam-79,
  Author	= {Temam, R.},
  Publisher	= {North-Holland},
  Title		= {{Navier-Stokes Equations, Theory and Numerical Analysis}},
  Year		= {1979}
}

@Book{		  temam-88,
  Author	= {Temam, R.},
  Publisher	= {{Springer-Verlag}},
  Title		= {{Infinite-dimensional dynamical systems in mechanics and
		  physics}},
  Year		= {1988}
}

###Book{	  temam-88,
  Author	= {Temam, R.},
  Publisher	= {{Springer-Verlag}},
  Title		= {{Infinite-dimensional dynamical systems in mechanics and
		  physics}},
  Year		= {1988}
}

@Book{		  temam-95,
  Author	= {Temam, R.},
  Edition	= {2d},
  Publisher	= {{CBMS-NSF Regional Conference Series in Applied
		  Mathematics, SIAM}},
  Title		= {{Navier-Stokes Equations and Nonlinear Functional
		  Analysis}},
  Year		= {1995}
}

###Book{	  temam-95,
  Author	= {Temam, R.},
  Edition	= {2d},
  Publisher	= {{CBMS-NSF Regional Conference Series in Applied
		  Mathematics, SIAM}},
  Title		= {{Navier-Stokes Equations and Nonlinear Functional
		  Analysis}},
  Year		= {1995}
}

@Article{	  temam1968bsmf,
  Title		= {Une m{\'e}thode d'approximation de la solution des
		  {\'e}quations de {N}avier-{S}tokes},
  Author	= {Temam, R.},
  Journal	= {Bull. Soc. Math. France},
  Year		= {1968},
  Pages		= {115--152},
  Volume	= {96},
  Keywords	= {Navier-Stokes}
}

@Article{	  temam1968methode,
  Title		= {Une m{\'e}thode d'approximation de la solution des
		  {\'e}quations de Navier-Stokes},
  Author	= {Temam, Roger},
  Journal	= {Bulletin de la Soci{\'e}t{\'e} Math{\'e}matique de France},
  Volume	= {96},
  Pages		= {115--152},
  Year		= {1968}
}

###Article{	  temam1968methode,
  Title		= {Une m{\'e}thode d'approximation de la solution des
		  {\'e}quations de Navier-Stokes},
  Author	= {Temam, Roger},
  Journal	= {Bulletin de la Soci{\'e}t{\'e} Math{\'e}matique de France},
  Volume	= {96},
  Pages		= {115--152},
  Year		= {1968}
}

@Article{	  temam69-1,
  Author	= "Temam, R.",
  Title		= "{Sur l'approximation de la solution des equations de
		  Navier-Stokes par la m\'{e}thode des pas fractionaires I}",
  Journal	= {Arch. Rational Mech. Anal.},
  fjournal	= {Archive for Rational Mechanics and Analysis},
  Volume	= "32",
  Pages		= "135--153",
  Year		= "1969"
}

###Article{	  temam69-1,
  Author	= "Temam, R.",
  Title		= "{Sur l'approximation de la solution des equations de
		  Navier-Stokes par la m\'{e}thode des pas fractionaires I}",
  Journal	= {Arch. Rational Mech. Anal.},
  fjournal	= {Archive for Rational Mechanics and Analysis},
  Volume	= "32",
  Pages		= "135--153",
  Year		= "1969"
}

@Article{	  temam69-2,
  Author	= "Temam, R.",
  Title		= "{Sur l'approximation de la solution des equations de
		  Navier-Stokes par la m\'{e}thode des pas fractionaires II}",
  Journal	= {Arch. Rational Mech. Anal.},
  fjournal	= {Archive for Rational Mechanics and Analysis},
  Volume	= "32",
  Pages		= "377--385",
  Year		= "1969"
}

###Article{	  temam69-2,
  Author	= "Temam, R.",
  Title		= "{Sur l'approximation de la solution des equations de
		  Navier-Stokes par la m\'{e}thode des pas fractionaires II}",
  Journal	= {Arch. Rational Mech. Anal.},
  fjournal	= {Archive for Rational Mechanics and Analysis},
  Volume	= "32",
  Pages		= "377--385",
  Year		= "1969"
}

@Book{		  temam_navier-stokes_2001,
  Title		= {Navier-{{Stokes}} Equations: Theory and Numerical
		  Analysis},
  ShortTitle	= {Navier-{{Stokes}} Equations},
  Author	= {Temam, Roger},
  Year		= {2001},
  Volume	= {343},
  Publisher	= {{American Mathematical Soc.}}
}

@InCollection{	  teshukov-99,
  Address	= {Basel},
  Author	= {Teshukov, V. M.},
  BookTitle	= {Hyperbolic problems: theory, numerics, applications, Vol.
		  II (Z{\"u}rich, 1998)},
  Pages		= {953--962},
  Publisher	= {Birkh{\"a}user},
  Series	= {Internat. Ser. Numer. Math., 130},
  Title		= {The {R}iemann problem for the integrodifferential
		  equations of the shallow water theory},
  Year		= {1999}
}

###InCollection{  teshukov-99,
  Address	= {Basel},
  Author	= {Teshukov, V. M.},
  BookTitle	= {Hyperbolic problems: theory, numerics, applications, Vol.
		  II (Z{\"u}rich, 1998)},
  Pages		= {953--962},
  Publisher	= {Birkh{\"a}user},
  Series	= {Internat. Ser. Numer. Math., 130},
  Title		= {The {R}iemann problem for the integrodifferential
		  equations of the shallow water theory},
  Year		= {1999}
}

@Article{	  tezduyar-01,
  Author	= {Tezduyar, T.E.},
  Journal	= {Arch. Comput. Methods Engrg.},
  Pages		= {83--130},
  Title		= {Finite Element Methods for Fluid Dynamics with Moving
		  Boundaries and Interfaces},
  Volume	= {8},
  Year		= {2001}
}

###Article{	  tezduyar-01,
  Author	= {Tezduyar, T.E.},
  Journal	= {Arch. Comput. Methods Engrg.},
  Pages		= {83--130},
  Title		= {Finite Element Methods for Fluid Dynamics with Moving
		  Boundaries and Interfaces},
  Volume	= {8},
  Year		= {2001}
}

@Article{	  thenappan2016critical,
  Title		= {The critical role of pulmonary arterial compliance in
		  pulmonary hypertension},
  Author	= {Thenappan, Thenappan and Prins, Kurt W and Pritzker, Marc
		  R and Scandurra, John and Volmers, Karl and Weir, E
		  Kenneth},
  Journal	= {Annals of the American Thoracic Society},
  Volume	= {13},
  Number	= {2},
  Pages		= {276--284},
  Year		= {2016},
  Publisher	= {American Thoracic Society}
}

@Article{	  thiriet-martin-borret-hecht-96,
  Annote	= {hemodynamics, non newtonian},
  Author	= {Thiriet, M. and Martin-Borret, G. and Hecht, F.},
  code		= {hemo},
  Journal	= {J. Phys III France},
  Pages		= {529-542},
  Title		= {Ecoulement rh{\'e}ofluidifiant dans un coude et une
		  bifurcation plane sym{\'e}trique. Application {\`a}
		  l'{\'e}coulement sanguin dans la grande circulation},
  Volume	= {6},
  Year		= {1996}
}

###Article{	  thiriet-martin-borret-hecht-96,
  Annote	= {hemodynamics, non newtonian},
  Author	= {Thiriet, M. and Martin-Borret, G. and Hecht, F.},
  code		= {hemo},
  Journal	= {J. Phys III France},
  Pages		= {529-542},
  Title		= {Ecoulement rh{\'e}ofluidifiant dans un coude et une
		  bifurcation plane sym{\'e}trique. Application {\`a}
		  l'{\'e}coulement sanguin dans la grande circulation},
  Volume	= {6},
  Year		= {1996}
}

@Book{		  thom06,
  Address	= {Berlin},
  Author	= {Thom{\'e}e, V.},
  Edition	= {Second},
  Publisher	= {Springer-Verlag},
  Series	= {Springer Series in Computational Mathematics},
  Title		= {Galerkin finite element methods for parabolic problems},
  Volume	= {25},
  Year		= {2006}
}

###Book{	  thom06,
  Address	= {Berlin},
  Author	= {Thom{\'e}e, V.},
  Edition	= {Second},
  Publisher	= {Springer-Verlag},
  Series	= {Springer Series in Computational Mathematics},
  Title		= {Galerkin finite element methods for parabolic problems},
  Volume	= {25},
  Year		= {2006}
}

@Article{	  thomas-trujillo-99,
  Author	= {Thomas, J.-M. and Trujillo, D.},
  code		= {por13},
  fjournal	= {International Journal for Numerical Methods in
		  Engineering},
  Journal	= {Internat. J. Numer. Methods Engrg.},
  Note		= {Fourth World Congress on Computational Mechanics (Buenos
		  Aires, 1998)},
  Number	= {9},
  Pages		= {1351--1366},
  Title		= {Mixed finite volume methods},
  Volume	= {46},
  Year		= {1999}
}

###Article{	  thomas-trujillo-99,
  Author	= {Thomas, J.-M. and Trujillo, D.},
  code		= {por13},
  fjournal	= {International Journal for Numerical Methods in
		  Engineering},
  Journal	= {Internat. J. Numer. Methods Engrg.},
  Note		= {Fourth World Congress on Computational Mechanics (Buenos
		  Aires, 1998)},
  Number	= {9},
  Pages		= {1351--1366},
  Title		= {Mixed finite volume methods},
  Volume	= {46},
  Year		= {1999}
}

@Book{		  thomee-06,
  Author	= {Thom{\'e}e, V.},
  Title		= {Galerkin finite element methods for parabolic problems},
  Series	= {Springer Series in Computational Mathematics},
  Volume	= {25},
  Edition	= {Second},
  Publisher	= {Springer-Verlag},
  Address	= {Berlin},
  Year		= {2006}
}

###Book{	  thomee-06,
  Author	= {Thom{\'e}e, V.},
  Title		= {Galerkin finite element methods for parabolic problems},
  Series	= {Springer Series in Computational Mathematics},
  Volume	= {25},
  Edition	= {Second},
  Publisher	= {Springer-Verlag},
  Address	= {Berlin},
  Year		= {2006}
}

@Article{	  thygesen2007jacc,
  Title		= {Universal Definition of Myocardial Infarction},
  Author	= {Thygesen, Kristian and Alpert, Joseph S. and White, Harvey
		  D.},
  Journal	= {Journal of the American College of Cardiology},
  Year		= {2007},
  Number	= {22},
  Pages		= {2173-2195},
  Volume	= {50},
  DOI		= {10.1016/j.jacc.2007.09.011},
  EPrint	= {/data/Journals/JAC/23108/09011.pdf},
  File		= {thygesen07.pdf:thygesen07.pdf:PDF},
  timestamp	= {2015/09/11},
  URL		= { + http://dx.doi.org/10.1016/j.jacc.2007.09.011}
}

@Article{	  tiago_patient-specific_2014,
  Title		= {Patient-Specific Blood Flow Simulations: Setting
		  {{Dirichlet}} Boundary Conditions for Minimal Error with
		  Respect to Measured Data},
  Volume	= {9},
  ShortTitle	= {Patient-Specific Blood Flow Simulations},
  Number	= {6},
  JournalTitle	= {Mathematical Modelling of Natural Phenomena},
  Year		= {2014},
  Pages		= {98--116},
  Author	= {Tiago, Jorge and Gambaruto, Alberto and Sequeira, Adelia}
}

@Article{	  tiago_velocity_2017,
  langid	= {english},
  Title		= {A Velocity Tracking Approach for the Data Assimilation
		  Problem in Blood Flow Simulations},
  Volume	= {33},
  ISSN		= {2040-7947},
  URL		= {https://onlinelibrary.wiley.com/doi/abs/10.1002/cnm.2856},
  DOI		= {10.1002/cnm.2856},
  Abstract	= {Several advances have been made in data assimilation
		  techniques applied to blood flow modeling. Typically,
		  idealized boundary conditions, only verified in straight
		  parts of the vessel, are assumed. We present a general
		  approach, on the basis of a Dirichlet boundary control
		  problem, that may potentially be used in different parts of
		  the arterial system. The relevance of this method appears
		  when computational reconstructions of the 3D domains, prone
		  to be considered sufficiently extended, are either not
		  possible, or desirable, because of computational costs. On
		  the basis of taking a fully unknown velocity profile as the
		  control, the approach uses a discretize then optimize
		  methodology to solve the control problem numerically. The
		  methodology is applied to a realistic 3D geometry
		  representing a brain aneurysm. The results show that this
		  data assimilation approach may be preferable to a pressure
		  control strategy and that it can significantly improve the
		  accuracy associated to typical solutions obtained using
		  idealized velocity profiles.},
  Number	= {10},
  JournalTitle	= {International Journal for Numerical Methods in Biomedical
		  Engineering},
  URLDate	= {2019-02-20},
  Year		= {2017},
  Pages		= {e2856},
  Author	= {Tiago, J. and Guerra, T. and Sequeira, A.}
}

@Article{	  tian,
  Author	= {Tian-Xiao Zhou and Min-Fu Feng},
  Journal	= {Math. of Comp.},
  Number	= {202},
  Pages		= {531-543},
  Title		= {{A least squares Petrov-Galerkin finite element method for
		  the stationary Navier-Stokes equations}},
  Volume	= {60},
  Year		= {1993}
}

###Article{	  tian,
  Author	= {Tian-Xiao Zhou and Min-Fu Feng},
  Journal	= {Math. of Comp.},
  Number	= {202},
  Pages		= {531-543},
  Title		= {{A least squares Petrov-Galerkin finite element method for
		  the stationary Navier-Stokes equations}},
  Volume	= {60},
  Year		= {1993}
}

@Article{	  timmermans-minev-vandevosse-96,
  Title		= {{An approximate projection scheme for incompressible flow
		  using spectral elements}},
  Author	= "Timmermans, L.~J.~P. and Minev, P.~D. and Van De Vosse,
		  F.~N.",
  Journal	= ijnmf,
  Volume	= {22},
  Number	= {7},
  Pages		= {673--688},
  Year		= {1996},
  Publisher	= {Chichester; New York: Wiley, c1981-}
}

###Article{	  timmermans-minev-vandevosse-96,
  Title		= {{An approximate projection scheme for incompressible flow
		  using spectral elements}},
  Author	= "Timmermans, L.~J.~P. and Minev, P.~D. and Van De Vosse,
		  F.~N.",
  Journal	= ijnmf,
  Volume	= {22},
  Number	= {7},
  Pages		= {673--688},
  Year		= {1996},
  Publisher	= {Chichester; New York: Wiley, c1981-}
}

@Article{	  timmermans1996approximate,
  Title		= {An approximate projection scheme for incompressible flow
		  using spectral elements},
  Author	= {Timmermans, LJP and Minev, PD and Van De Vosse, FN},
  Journal	= {International journal for numerical methods in fluids},
  Volume	= {22},
  Number	= {7},
  Pages		= {673--688},
  Year		= {1996},
  Publisher	= {Wiley Online Library}
}

@PhdThesis{	  tinkl2014phd,
  Title		= {Towards a predictive computational growth model for
		  aneurysms},
  Author	= {Tinkl, Susanna},
  School	= {Technische Universit\"at M\"unchen},
  Year		= {2014},
  File		= {:tinkl14.pdf:PDF},
  owner		= {pfaller},
  timestamp	= {2014/12/01}
}

@Article{	  tippett_ensemble_2003,
  langid	= {english},
  Title		= {Ensemble {{Square Root Filters}}*},
  Volume	= {131},
  ISSN		= {0027-0644, 1520-0493},
  URL		= {http://journals.ametsoc.org/doi/abs/10.1175/1520-0493%282003%29131%3C1485%3AESRF%3E2.0.CO%3B2},
  DOI		= {10.1175/1520-0493(2003)131<1485:ESRF>2.0.CO;2},
  Number	= {7},
  JournalTitle	= {Monthly Weather Review},
  URLDate	= {2019-02-27},
  Year		= {2003-07},
  Pages		= {1485-1490},
  Author	= {Tippett, Michael K. and Anderson, Jeffrey L. and Bishop,
		  Craig H. and Hamill, Thomas M. and Whitaker, Jeffrey S.}
}

@InProceedings{	  tobar2015learning,
  Title		= {Learning Stationary Time Series using Gaussian Processes
		  with Nonparametric Kernels},
  Author	= {Tobar, F. and Bui, T. and Turner, R.},
  BookTitle	= {Neural Information Processing Systems 28},
  Year		= {2015}
}

@InProceedings{	  tobar2015modelling,
  Title		= {Modelling of Complex Signals Using Gaussian Processes},
  Author	= {Tobar, Felipe and Turner, Richard E},
  BookTitle	= {IEEE ICASSP},
  Year		= {2015}
}

@Article{	  tobiska-verurth-96,
  Author	= {Tobiska, L. and Verf{\"u}rth, R.},
  Journal	= {SIAM J. Numer. Anal.},
  Number	= {1},
  Pages		= {107--127},
  Title		= {Analysis of a streamline diffusion finite element method
		  for the {S}tokes and {N}avier-{S}tokes equations},
  Volume	= {33},
  Year		= {1996}
}

###Article{	  tobiska-verurth-96,
  Author	= {Tobiska, L. and Verf{\"u}rth, R.},
  Journal	= {SIAM J. Numer. Anal.},
  Number	= {1},
  Pages		= {107--127},
  Title		= {Analysis of a streamline diffusion finite element method
		  for the {S}tokes and {N}avier-{S}tokes equations},
  Volume	= {33},
  Year		= {1996}
}

@Article{	  tobon-gomez_understanding_2013,
  Title		= {Understanding the mechanisms amenable to {CRT} response:
		  from pre-operative multimodal image data to
		  patient-specific computational models},
  Author	= {Tobon-Gomez, C. and Duchateau, N. and Sebastian, R. and
		  Marchesseau, S. and Camara, O. and Donal, E. and De Craene,
		  M. and Pashaei, A. and Relan, J. and Steghofer, M. and
		  Lamata, P. and Delingette, H. and Duckett, S. and Garreau,
		  M. and Hernandez, A. and Rhode, K.S. and Sermesant, M. and
		  Ayache, N. and Leclercq, C. and Razavi, R. and Smith, N.P.
		  and Frangi, A.F.},
  Journal	= {Medical \& Biological Engineering \& Computing},
  Year		= {2013},
  Month		= nov,
  Number	= {11},
  Pages		= {1235--1250},
  Volume	= {51},
  DOI		= {10.1007/s11517-013-1044-7},
  File		= {Tobon2012.pdf:/home/hoermann/.zotero/zotero/krpbc0h6.default/zotero/storage/NH3Z9MSU/Tobon2012.pdf:application/pdf},
  ISSN		= {0140-0118, 1741-0444},
  Language	= {en},
  ShortTitle	= {Understanding the mechanisms amenable to {CRT} response},
  URL		= {http://link.springer.com/10.1007/s11517-013-1044-7},
  URLDate	= {2014-11-27}
}

@Article{	  toro2002aoco,
  Title		= {Long-term follow-up of patients after coarctation of the
		  aorta repair},
  Author	= {Toro-Salazar, Olga H and Steinberger, Julia and Thomas,
		  William and Rocchini, Albert P and Carpenter, Becky and
		  Moller, James H},
  Journal	= {The American journal of cardiology},
  Volume	= {89},
  Number	= {5},
  Pages		= {541--547},
  Year		= {2002},
  Publisher	= {Elsevier}
}

@Article{	  toro2002coao,
  Title		= {Long-term follow-up of patients after coarctation of the
		  aorta repair},
  Author	= {Toro-Salazar, Olga H and Steinberger, Julia and Thomas,
		  William and Rocchini, Albert P and Carpenter, Becky and
		  Moller, James H},
  Journal	= {The American journal of cardiology},
  Volume	= {89},
  Number	= {5},
  Pages		= {541--547},
  Year		= {2002},
  Publisher	= {Elsevier}
}

@Article{	  torrey1956physrev,
  Title		= {Bloch Equations with Diffusion Terms},
  Author	= {Torrey, H. C.},
  Journal	= {Physical Review},
  Year		= {1956},
  Month		= nov,
  Number	= {3},
  Pages		= {563--565},
  Volume	= {104},
  Abstract	= {The phenomenological Bloch equations in nuclear magnetic
		  resonance are generalized by the addition of terms due to
		  the transfer of magnetization by diffusion. The revised
		  equations describe phenomena under conditions of
		  inhomogeneity in magnetic field, relaxation rates, or
		  initial magnetization. As an example the equations are
		  solved in the case of the free precession of magnetic
		  moment in the presence of an inhomogeneous magnetic field
		  following the application of a 90{\textdegree} pulse with
		  subsequent applications of a succession of 180{\textdegree}
		  pulses. The spin-echo amplitudes agree with the results of
		  Carr and Purcell from a random walk theory.},
  DOI		= {10.1103/PhysRev.104.563},
  owner		= {david},
  timestamp	= {2015-05-05 20:18:11},
  URL		= {http://link.aps.org/doi/10.1103/PhysRev.104.563},
  URLDate	= {2015-05-05}
}

@InCollection{	  toussaint-etal-10,
  Year		= {2010},
  ISBN		= {978-3-642-15704-2},
  BookTitle	= {Medical Image Computing and Computer-Assisted Intervention
		  â MICCAI 2010},
  Volume	= {6361},
  Series	= {Lecture Notes in Computer Science},
  Editor	= {Jiang, Tianzi and Navab, Nassir and Pluim, JosienP.W. and
		  Viergever, MaxA.},
  Title		= {In vivo Human {3D} Cardiac Fibre Architecture:
		  Reconstruction Using Curvilinear Interpolation of Diffusion
		  Tensor Images},
  Publisher	= {Springer Berlin Heidelberg},
  Author	= {Toussaint, N. and Sermesant, M. and Stoeck, C.T. and
		  Kozerke, S. and Batchelor, P.G.},
  Pages		= {418-425}
}

@Article{	  toussaint-etal-2013,
  Title		= {In vivo human cardiac fibre architecture estimation using
		  shape-based diffusion tensor processing},
  Journal	= {Medical Image Analysis},
  Volume	= {17},
  Number	= {8},
  Pages		= {1243 - 1255},
  Year		= {2013},
  Note		= {},
  ISSN		= {1361-8415},
  Author	= {N. Toussaint and C. T. Stoeck and T. Schaeffter and S.
		  Kozerke and M. Sermesant and P.G. Batchelor},
  Keywords	= {Prolate spheroidal coordinates }
}

@Article{	  toussaint2010miccai,
  Title		= {In vivo human 3D cardiac fibre architecture:
		  reconstruction using curvilinear interpolation of diffusion
		  tensor images.},
  Author	= {Toussaint, Nicolas and Sermesant, Maxime and Stoeck,
		  Christian T. and Kozerke, Sebastian and Batchelor, Philip
		  G.},
  Journal	= {Med Image Comput Comput Assist Interv},
  Year		= {2010},
  Number	= {Pt 1},
  Pages		= {418--425},
  Volume	= {13},
  Abstract	= {In vivo imaging of the cardiac 3D fibre architecture is
		  still a challenge, but it would have many clinical
		  applications, for instance to better understand pathologies
		  and to follow up remodelling after therapy. Recently,
		  cardiac MRI enabled the acquisition of Diffusion Tensor
		  images (DTI) of 2D slices. We propose a method for the
		  complete 3D reconstruction of cardiac fibre architecture in
		  the left ventricular myocardium from sparse in vivo DTI
		  slices. This is achieved in two steps. First we map
		  non-linearly the left ventricular geometry to a truncated
		  ellipsoid. Second, we express coordinates and tensor
		  components in Prolate Spheroidal System, where an
		  anisotropic Gaussian kernel regression interpolation is
		  performed. The framework is initially applied to a
		  statistical cardiac DTI atlas in order to estimate the
		  optimal anisotropic bandwidths. Then, it is applied to in
		  vivo beating heart DTI data sparsely acquired on a healthy
		  subject. Resulting in vivo tensor field shows good
		  correlation with literature, especially the elevation
		  (helix) angle transmural variation. To our knowledge, this
		  is the first reconstruction of in vivo human 3D cardiac
		  fibre structure. Such approach opens up possibilities in
		  terms of analysis of the fibre architecture in patients.},
  Institution	= {King's College London, Imaging Sciences, London, UK.
		  nicolas.toussaint@kcl.ac.uk},
  Keywords	= {Algorithms; Diffusion Magnetic Resonance Imaging, methods;
		  Heart Ventricles, cytology; Humans; Image Enhancement,
		  methods; Image Interpretation, Computer-Assisted, methods;
		  Imaging, Three-Dimensional, methods; Pattern Recognition,
		  Automated, methods; Reproducibility of Results; Sensitivity
		  and Specificity; Subtraction Technique},
  Language	= {eng},
  medline-pst	= {ppublish},
  owner		= {stoeckc},
  pmid		= {20879258},
  timestamp	= {2015.07.24}
}

@TechReport{	  trompert-hansen-99,
  Annote	= {mhd, dynamo, finite volume},
  Author	= {Trompert, R. A. and Hansen, U.},
  code		= {mhd22},
  Institution	= {Utrecht Univ.},
  Title		= {A code for the simulation of dynamos in a strongly
		  rotating incompressible fluid},
  Year		= {1999}
}

###TechReport{	  trompert-hansen-99,
  Annote	= {mhd, dynamo, finite volume},
  Author	= {Trompert, R. A. and Hansen, U.},
  code		= {mhd22},
  Institution	= {Utrecht Univ.},
  Title		= {A code for the simulation of dynamos in a strongly
		  rotating incompressible fluid},
  Year		= {1999}
}

@Article{	  tseng2003,
  Title		= {Diffusion tensor MRI of myocardial fibers and sheets:
		  Correspondence with visible cut-face texture},
  Author	= {Tseng, W.-Y. I. and Wedeen, V. J. and Reese, T. G. and
		  Smith, R. N. and Halpern, E. F.},
  Journal	= {Journal of Magnetic Resonance Imaging},
  Volume	= {17},
  Number	= {1},
  Pages		= {31--42},
  Year		= {2003},
  Publisher	= {Wiley Online Library}
}

@Article{	  tuan-pham-verron-roubaud-98,
  Title		= {A singular evolutive extended Kalman filter for data
		  assimilation in oceanography},
  Author	= {Tuan Pham, D. and Verron, J. and Christine Roubaud, M.},
  Journal	= {Journal of Marine systems},
  Volume	= {16},
  Number	= {3-4},
  Pages		= {323--340},
  Year		= {1998},
  Publisher	= {Elsevier}
}

###Article{	  tuan-pham-verron-roubaud-98,
  Title		= {A singular evolutive extended Kalman filter for data
		  assimilation in oceanography},
  Author	= {Tuan Pham, D. and Verron, J. and Christine Roubaud, M.},
  Journal	= {Journal of Marine systems},
  Volume	= {16},
  Number	= {3-4},
  Pages		= {323--340},
  Year		= {1998},
  Publisher	= {Elsevier}
}

@Article{	  turkel-fiterman-van-leer-93,
  Author	= {Turkel, E. and Fiterman, A. and van Leer, B.},
  Journal	= {ICASE Report},
  Title		= {Preconditionning and the limit to the incompressible flow
		  equations},
  Volume	= {93-42},
  Year		= {1993}
}

###Article{	  turkel-fiterman-van-leer-93,
  Author	= {Turkel, E. and Fiterman, A. and van Leer, B.},
  Journal	= {ICASE Report},
  Title		= {Preconditionning and the limit to the incompressible flow
		  equations},
  Volume	= {93-42},
  Year		= {1993}
}

@Article{	  tyszka_three-dimensional_2000,
  Title		= {Three-Dimensional, Time-Resolved ({{4D}}) Relative
		  Pressure Mapping Using Magnetic Resonance Imaging},
  Volume	= {12},
  Number	= {2},
  JournalTitle	= {Journal of Magnetic Resonance Imaging: An Official Journal
		  of the International Society for Magnetic Resonance in
		  Medicine},
  Year		= {2000},
  Pages		= {321--329},
  Author	= {Tyszka, J. Michael and Laidlaw, David H. and Asa, Joseph
		  W. and Silverman, Jeffrey M.}
}

@InCollection{	  tzavaras-00,
  Author	= {Tzavaras, A. E.},
  BookTitle	= {Advances in Math. Fluid Mechanics},
  Editor	= {Malek, J. and Necas, J. and Rokyta, M. },
  Pages		= {192-222},
  Publisher	= {Springer},
  Title		= {On the mathematical theory of fluid dynamic limits to
		  conservation laws},
  Year		= {2000}
}

###InCollection{  tzavaras-00,
  Author	= {Tzavaras, A. E.},
  BookTitle	= {Advances in Math. Fluid Mechanics},
  Editor	= {Malek, J. and Necas, J. and Rokyta, M. },
  Pages		= {192-222},
  Publisher	= {Springer},
  Title		= {On the mathematical theory of fluid dynamic limits to
		  conservation laws},
  Year		= {2000}
}

@Article{	  ubbink2006mia,
  Title		= {Towards model-based analysis of cardiac \{MR\} tagging
		  data: Relation between left ventricular shear strain and
		  myofiber orientation },
  Author	= {S.W.J. Ubbink and P.H.M. Bovendeerd and T. Delhaas and T.
		  Arts and F.N. van de Vosse},
  Journal	= {Medical Image Analysis },
  Year		= {2006},
  Note		= {Special Issue on Functional Imaging and Modelling of the
		  Heart (FIMH 2005) },
  Number	= {4},
  Pages		= {632 - 641},
  Volume	= {10},
  Abstract	= {Many cardiac pathologies are reflected in abnormal
		  myocardial deformation, accessible through magnetic
		  resonance tagging (MRT). Interpretation of the \{MRT\} data
		  is difficult, since the relation between pathology and
		  deformation is not straightforward. Mathematical models of
		  cardiac mechanics could be used to translate measured
		  abnormalities into the underlying pathology, but, so far,
		  they even fail to correctly simulate myocardial deformation
		  in the healthy heart. In this study we investigated to what
		  extent (1) our previously published three-dimensional
		  finite element model of cardiac mechanics [Kerckhoffs,
		  R.C.P., Bovendeerd, P.H.M., Kotte, J.C.S., Prinzen, F.W.,
		  Smits, K., Arts, T., 2003. Homogeneity of cardiac
		  contraction despite physiological asynchrony of
		  depolarization: a model study. Ann. Biomed. Eng. 31,
		  536?547] can simulate measured cardiac deformation, and (2)
		  discrepancies between strains in model and experiment are
		  related to the choice of the myofiber orientation in the
		  model. To this end, we measured midwall circumferential
		  strain Ecc and circumferential-radial shear strain Ecr in
		  three healthy subjects using MRT. Ecc as computed in the
		  model agreed well with measured Ecc. Computed Ecr differed
		  significantly from measured Ecr. The time course of Ecr was
		  found to be very sensitive to the choice of the myofiber
		  orientation, in particular to the choice of the transverse
		  angle. Discrepancies between circumferential-radial shear
		  strain in model and experiment were reduced strongly by
		  increasing the transverse angle in the original model by
		  25%. },
  DOI		= {http://dx.doi.org/10.1016/j.media.2006.04.001},
  File		= {ubbink06.pdf:ubbink06.pdf:PDF},
  ISSN		= {1361-8415},
  Keywords	= {Magnetic resonance tagging},
  timestamp	= {2015/09/22},
  URL		= {http://www.sciencedirect.com/science/article/pii/S1361841506000326}
}

@Article{	  uniaxial-holzapfel-06,
  Author	= {Holzapfel, G.A.},
  Title		= {Determination of material models for arterial walls from
		  uniaxial extension tests and histological structure.},
  Journal	= {Journal of Theoretical Biology},
  Volume	= {238},
  Year		= {2006},
  Number	= {2},
  Pages		= {290-302},
  pubmedid	= {16043190},
  ISSN		= {0022-5193}
}

###Article{	  uniaxial-holzapfel-06,
  Author	= {Holzapfel, G.A.},
  Title		= {Determination of material models for arterial walls from
		  uniaxial extension tests and histological structure.},
  Journal	= {Journal of Theoretical Biology},
  Volume	= {238},
  Year		= {2006},
  Number	= {2},
  Pages		= {290-302},
  URL		= {http://www.biomedsearch.com/nih/Determination-material-models-arterial-walls/16043190.html},
  pubmedid	= {16043190},
  ISSN		= {0022-5193}
}

@Article{	  urbina2016phantom,
  Author	= {Urbina, J. and Sotelo, J. and Springmuller, D. and
		  Montalba, C. and Letelier, K. and Tejos, C. and
		  Irarrazaval, P. and Andia, M. and Razavi, R. and Valverde,
		  I. and Uribe, S.},
  Title		= {Realistic aortic phantom to study hemodynamics using MRI
		  and cardiac catheterization in normal and aortic
		  coarctation conditions},
  Journal	= {Journal of Magnetic Resonance Imaging},
  ISSN		= {1522-2586},
  URL		= {http://dx.doi.org/10.1002/jmri.25208},
  DOI		= {10.1002/jmri.25208},
  Volume	= {44},
  Number	= {3},
  Pages		= {683--697},
  Year		= {2016}
}

@Article{	  urbina_realistic_2016,
  Title		= {Realistic Aortic Phantom to Study Hemodynamics Using
		  {{MRI}} and Cardiac Catheterization in Normal and Aortic
		  Coarctation Conditions},
  Author	= {Urbina, Jes{\'u}s and Sotelo, Julio A. and
		  Springm{\"u}ller, Daniel and Montalba, Cristian and
		  Letelier, Karis and Tejos, Cristi{\'a}n and
		  Irarr{\'a}zaval, Pablo and Andia, Marcelo E. and Razavi,
		  Reza and Valverde, Israel},
  Year		= {2016},
  Volume	= {44},
  Pages		= {683--697},
  Journal	= {Journal of Magnetic Resonance Imaging},
  Number	= {3}
}

@Article{	  urchuk_mr_1994,
  Title		= {{{MR}} Measurement of Pulsatile Pressure Gradients},
  Volume	= {4},
  Number	= {6},
  JournalTitle	= {Journal of magnetic resonance imaging},
  Year		= {1994},
  Pages		= {829--836},
  Author	= {Urchuk, Steven N. and Plewes, Donald B.}
}

@Article{	  uribe-beerbaum-etal-09,
  Author	= {Uribe, S. and Beerbaum, P. and S\o{}rensen, T. and
		  Rasmusson, A. and Razavi, R. and Schaeffter, T.},
  Title		= {Four-dimensional (4D) flow of the whole heart and great
		  vessels using real-time respiratory self-gating},
  Journal	= {Magnetic Resonance in Medicine},
  Volume	= {62},
  Number	= {4},
  Publisher	= {Wiley Subscription Services, Inc., A Wiley Company},
  ISSN		= {1522-2594},
  DOI		= {10.1002/mrm.22090},
  Pages		= {984--992},
  Keywords	= {4D flow imaging, whole heart, self-gating, Hemodynamic
		  assessment, congenital heart disease},
  Year		= {2009}
}

###Article{	  uribe-beerbaum-etal-09,
  Author	= {Uribe, S. and Beerbaum, P. and S\o{}rensen, T. and
		  Rasmusson, A. and Razavi, R. and Schaeffter, T.},
  Title		= {Four-dimensional (4D) flow of the whole heart and great
		  vessels using real-time respiratory self-gating},
  Journal	= {Magnetic Resonance in Medicine},
  Volume	= {62},
  Number	= {4},
  Publisher	= {Wiley Subscription Services, Inc., A Wiley Company},
  ISSN		= {1522-2594},
  URL		= {http://dx.doi.org/10.1002/mrm.22090},
  DOI		= {10.1002/mrm.22090},
  Pages		= {984--992},
  Keywords	= {4D flow imaging, whole heart, self-gating, Hemodynamic
		  assessment, congenital heart disease},
  Year		= {2009}
}

@InProceedings{	  urquiza-venere-clara-feijoo-00,
  Address	= {Barcelona},
  Author	= {Urquiza, S.A. and Venere, M.J. and Clara, F.M. and
		  Feij{\'o}o, R.A.},
  BookTitle	= {ECCOMAS},
  Title		= {Finite element (one-dimensional) haemodynamic model of the
		  human arterial system},
  Year		= {2000}
}

###InProceedings{ urquiza-venere-clara-feijoo-00,
  Address	= {Barcelona},
  Author	= {Urquiza, S.A. and Venere, M.J. and Clara, F.M. and
		  Feij{\'o}o, R.A.},
  BookTitle	= {ECCOMAS},
  Title		= {Finite element (one-dimensional) haemodynamic model of the
		  human arterial system},
  Year		= {2000}
}

@Article{	  urquiza2014weak,
  Title		= {Weak imposition of the slip boundary condition on curved
		  boundaries for Stokes flow},
  Author	= {Urquiza, Jos{\'e} M and Garon, Andr{\'e} and Farinas,
		  Marie-Isabelle},
  Journal	= {Journal of Computational Physics},
  Volume	= {256},
  Pages		= {748--767},
  Year		= {2014},
  Publisher	= {Elsevier}
}

@Article{	  urquizablanco_2006,
  Author	= "Urquiza, S.~A. and Blanco, P.~J. and V\'ene`re, M.~J. and
		  Feij\'oo, R.~A.",
  Title		= "Multidimensional modelling for the carotid artery blood
		  Ãow",
  Journal	= "Comput. Methods Appl. Mech. Engrg.",
  Volume	= "195",
  Pages		= "4002--4017",
  Year		= "2006"
}

###Article{	  urquizablanco_2006,
  Author	= "Urquiza, S.~A. and Blanco, P.~J. and V\'ene`re, M.~J. and
		  Feij\'oo, R.~A.",
  Title		= "Multidimensional modelling for the carotid artery blood
		  Ãow",
  Journal	= "Comput. Methods Appl. Mech. Engrg.",
  Volume	= "195",
  Pages		= "4002--4017",
  Year		= "2006"
}

@Article{	  utz1987aajr,
  Title		= {Cine MR determination of left ventricular ejection
		  fraction.},
  Author	= {Utz, J. A. and Herfkens, R. J. and Heinsimer, J. A. and
		  Bashore, T. and Califf, R. and Glover, G. and Pelc, N. and
		  Shimakawa, A.},
  Journal	= {AJR Am J Roentgenol},
  Year		= {1987},
  Month		= {May},
  Number	= {5},
  Pages		= {839--843},
  Volume	= {148},
  Abstract	= {Cine MR imaging provides tomographic images of the heart
		  with both high spatial and high temporal resolution. As
		  many as 32 images per cardiac cycle can be acquired with up
		  to four separate anatomic slices and a total imaging time
		  of 128 cardiac cycles. End-diastolic and end-systolic
		  volumes were determined in 11 patients, and ejection
		  fractions were calculated. The results correlated linearly
		  with those from cardiac catheterization (correlation
		  coefficient of .88). We conclude that cine MR imaging can
		  be used to obtain quantitative information about the heart
		  and has the potential to become a valuable noninvasive
		  means of cardiac evaluation.},
  DOI		= {10.2214/ajr.148.5.839},
  Keywords	= {Cardiac Catheterization; Evaluation Studies as Topic;
		  Heart Ventricles, radiography; Humans; Magnetic Resonance
		  Spectroscopy, diagnostic use/methods; Motion Pictures as
		  Topic; Myocardium, pathology; Stroke Volume},
  Language	= {eng},
  medline-pst	= {ppublish},
  owner		= {stoeckc},
  pmid		= {3495115},
  timestamp	= {2015.07.24},
  URL		= {http://dx.doi.org/10.2214/ajr.148.5.839}
}

@Article{	  vadakkumpadan2012image,
  Title		= {Image-based estimation of ventricular fiber orientations
		  for personalized modeling of cardiac electrophysiology},
  Author	= {Vadakkumpadan, Fijoy and Arevalo, Hermenegild and
		  Ceritoglu, Can and Miller, Michael and Trayanova, Natalia},
  Journal	= {Medical Imaging, IEEE Transactions on},
  Volume	= {31},
  Number	= {5},
  Pages		= {1051--1060},
  Year		= {2012},
  Publisher	= {IEEE}
}

@Article{	  vadakkumpadan2013patient,
  Title		= {Patient-specific modeling of the heart: estimation of
		  ventricular fiber orientations},
  Author	= {Vadakkumpadan, Fijoy and Arevalo, Hermenegild and
		  Trayanova, Natalia A},
  Journal	= {Journal of visualized experiments},
  Number	= {71},
  Year		= {2013},
  Publisher	= {NIH Public Access}
}

@Article{	  vahanian2012eurheartj,
  Author	= { Vahanian, Alec and Alfieri, Ottavio and Andreotti,
		  Felicita and Antunes, Manuel J. and Bar{\'o}n-Esquivias,
		  Gonzalo and Baumgartner, Helmut and Borger, Michael Andrew
		  and Carrel, Thierry P. and De Bonis, Michele and
		  Evangelista, Arturo and Falk, Volkmar and Iung, Bernard and
		  Lancellotti, Patrizio and Pierard, Luc and Price, Susanna
		  and Sch{\"a}fers, Hans-Joachim and Schuler, Gerhard and
		  Stepinska, Janina and Swedberg, Karl and Takkenberg,
		  Johanna and Von Oppell, Ulrich Otto and Windecker, Stephan
		  and Zamorano, Jose Luis and Zembala, Marian and , and Bax,
		  Jeroen J. and Baumgartner, Helmut and Ceconi, Claudio and
		  Dean, Veronica and Deaton, Christi and Fagard, Robert and
		  Funck-Brentano, Christian and Hasdai, David and Hoes, Arno
		  and Kirchhof, Paulus and Knuuti, Juhani and Kolh, Philippe
		  and McDonagh, Theresa and Moulin, Cyril and Popescu, Bogdan
		  A. and Reiner, {\v Z}eljko and Sechtem, Udo and Sirnes, Per
		  Anton and Tendera, Michal and Torbicki, Adam and Vahanian,
		  Alec and Windecker, Stephan and , and Popescu, Bogdan A.
		  and Von Segesser, Ludwig and Badano, Luigi P. and Bunc,
		  Matja{\v z} and Claeys, Marc J. and Drinkovic, Niksa and
		  Filippatos, Gerasimos and Habib, Gilbert and Kappetein, A.
		  Pieter and Kassab, Roland and Lip, Gregory Y.H. and Moat,
		  Neil and Nickenig, Georg and Otto, Catherine M. and Pepper,
		  John and Piazza, Nicolo and Pieper, Petronella G. and
		  Rosenhek, Raphael and Shuka, Naltin and Schwammenthal, Ehud
		  and Schwitter, Juerg and Mas, Pilar Tornos and Trindade,
		  Pedro T. and Walther, Thomas},
  Title		= {Guidelines on the management of valvular heart disease
		  (version 2012)},
  Volume	= {33},
  Number	= {19},
  Pages		= {2451--2496},
  Year		= {2012},
  DOI		= {10.1093/eurheartj/ehs109},
  Publisher	= {The Oxford University Press},
  ISSN		= {0195-668X},
  URL		= {http://eurheartj.oxfordjournals.org/content/33/19/2451},
  EPrint	= {http://eurheartj.oxfordjournals.org/content/33/19/2451.full.pdf},
  Journal	= {European Heart Journal}
}

###Article{	  vahanian2012eurheartj,
  Author	= { Vahanian, A. and Alfieri, O. and Andreotti, F. and et
		  al},
  Title		= {Guidelines on the management of valvular heart disease
		  (version 2012)},
  Volume	= {33},
  Number	= {19},
  Pages		= {2451--2496},
  Year		= {2012},
  DOI		= {10.1093/eurheartj/ehs109},
  Publisher	= {The Oxford University Press},
  ISSN		= {0195-668X},
  EPrint	= {http://eurheartj.oxfordjournals.org/content/33/19/2451.full.pdf},
  Journal	= {European Heart Journal}
}

@Article{	  vahanian_guidelines_2012,
  langid	= {english},
  Title		= {Guidelines on the Management of Valvular Heart Disease
		  (Version 2012)},
  Volume	= {33},
  ISSN		= {1522-9645},
  DOI		= {10.1093/eurheartj/ehs109},
  Number	= {19},
  JournalTitle	= {European Heart Journal},
  ShortJournal	= {Eur. Heart J.},
  Year		= {2012-10},
  Pages		= {2451-2496},
  Author	= {Vahanian, Alec and Alfieri, Ottavio and Andreotti,
		  Felicita and Antunes, Manuel J. and BarÃ³n-Esquivias,
		  Gonzalo and Baumgartner, Helmut and Borger, Michael Andrew
		  and Carrel, Thierry P. and De Bonis, Michele and
		  Evangelista, Arturo and Falk, Volkmar and Iung, Bernard and
		  Lancellotti, Patrizio and Pierard, Luc and Price, Susanna
		  and SchÃ¤fers, Hans-Joachim and Schuler, Gerhard and
		  Stepinska, Janina and Swedberg, Karl and Takkenberg,
		  Johanna and Von Oppell, Ulrich Otto and Windecker, Stephan
		  and Zamorano, Jose Luis and Zembala, Marian},
  EPrintType	= {pmid},
  EPrint	= {22922415}
}

@PhdThesis{	  valverde-11,
  Author	= {Valverde, I.},
  School	= {King's College of London},
  Title		= {Evaluation of Magnetic Resonance Imaging for Image-Based
		  Computational Fluid Dynamic Modelling in Aaortic
		  Coarctation},
  Year		= {2012}
}

###PhdThesis{	  valverde-11,
  Author	= {Valverde, I.},
  School	= {King's College of London},
  Title		= {Evaluation of Magnetic Resonance Imaging for Image-Based
		  Computational Fluid Dynamic Modelling in Aaortic
		  Coarctation},
  Year		= {2012}
}

@InProceedings{	  van-leer-83,
  Author	= {B. van Leer},
  BookTitle	= {Von Karman Institute, Lecture series},
  Title		= {Computational methods for ideal compressible flows},
  Year		= {1983}
}

###InProceedings{ van-leer-83,
  Author	= {B. van Leer},
  BookTitle	= {Von Karman Institute, Lecture series},
  Title		= {Computational methods for ideal compressible flows},
  Year		= {1983}
}

@Article{	  van1986second,
  Title		= {A second-order accurate pressure-correction scheme for
		  viscous incompressible flow},
  Author	= {Van Kan, JJIM},
  Journal	= {SIAM Journal on Scientific and Statistical Computing},
  Volume	= {7},
  Number	= {3},
  Pages		= {870--891},
  Year		= {1986},
  Publisher	= {SIAM}
}

###Article{	  van1986second,
  Title		= {A second-order accurate pressure-correction scheme for
		  viscous incompressible flow},
  Author	= {Van Kan, JJIM},
  Journal	= {SIAM Journal on Scientific and Statistical Computing},
  Volume	= {7},
  Number	= {3},
  Pages		= {870--891},
  Year		= {1986},
  Publisher	= {SIAM}
}

@Article{	  veneziani_flow_2005,
  Title		= {Flow Rate Defective Boundary Conditions in Haemodynamics
		  Simulations},
  Volume	= {47},
  Number	= {8-9},
  JournalTitle	= {International Journal for Numerical Methods in Fluids},
  Year		= {2005},
  Pages		= {803--816},
  Author	= {Veneziani, Alessandro and Vergara, Christian}
}

@Article{	  vergara-08,
  Author	= {Nobile, F. and Vergara, C.},
  Journal	= {SIAM J. Sci. Comput.},
  Number	= 2,
  Pages		= {731--763},
  Title		= {An effective fluid-structure interaction formulation for
		  vascular dynamics by generalized {R}obin conditions},
  Volume	= 30,
  Year		= 2008
}

###Article{	  vergara-08,
  Author	= {Nobile, F. and Vergara, C.},
  Journal	= {SIAM J. Sci. Comput.},
  Number	= 2,
  Pages		= {731--763},
  Title		= {An effective fluid-structure interaction formulation for
		  vascular dynamics by generalized {R}obin conditions},
  Volume	= 30,
  Year		= 2008
}

@Article{	  verhaert2011jci,
  Title		= {Direct T2 quantification of myocardial edema in acute
		  ischemic injury.},
  Author	= {Verhaert, David and Thavendiranathan, Paaladinesh and
		  Giri, Shivraman and Mihai, Georgeta and Rajagopalan, Sanjay
		  and Simonetti, Orlando P. and Raman, Subha V.},
  Journal	= {JACC Cardiovasc Imaging},
  Year		= {2011},
  Month		= {Mar},
  Number	= {3},
  Pages		= {269--278},
  Volume	= {4},
  Abstract	= {To evaluate the utility of rapid, quantitative T2 mapping
		  compared with conventional T2-weighted imaging in patients
		  presenting with various forms of acute myocardial
		  infarction.T2-weighted cardiac magnetic resonance (CMR)
		  identifies myocardial edema before the onset of
		  irreversible ischemic injury and has shown value in
		  risk-stratifying patients with chest pain. Clinical
		  acceptance of T2-weighted CMR has, however, been limited by
		  well-known technical problems associated with existing
		  techniques. T2 quantification has recently been shown to
		  overcome these problems; we hypothesized that T2
		  measurement in infarcted myocardium versus remote regions
		  versus zones of microvascular obstruction in acute
		  myocardial infarction patients could help reduce
		  uncertainty in interpretation of T2-weighted images.T2
		  values using a novel mapping technique were prospectively
		  recorded in 16 myocardial segments in 27 patients admitted
		  with acute myocardial infarction. Regional T2 values were
		  averaged in the infarct zone and remote myocardium, both
		  defined by a reviewer blinded to the results of T2 mapping.
		  Myocardial T2 was also measured in a group of 21 healthy
		  volunteers.T2 of the infarct zone was 69 Â± 6 ms compared
		  with 56 Â± 3.4 ms for remote myocardium (p < 0.0001). No
		  difference in T2 was observed between remote myocardium and
		  myocardium of healthy volunteers (56 Â± 3.4 ms and 55.5 Â±
		  2.3 ms, respectively, p = NS). T2 mapping allowed for the
		  detection of edematous myocardium in 26 of 27 patients; by
		  comparison, segmented breath-hold T2-weighted short tau
		  inversion recovery images were negative in 7 and
		  uninterpretable in another 2 due to breathing artifacts.
		  Within the infarct zone, areas of microvascular obstruction
		  were characterized by a lower T2 value (59 Â± 6 ms)
		  compared with areas with no microvascular obstruction (71.6
		  Â± 10 ms, p < 0.0001). T2 mapping provided consistent
		  high-quality results in patients unable to breath-hold and
		  in those with irregular heart rhythms, in whom short tau
		  inversion recovery often yielded inadequate
		  imaging.Quantitative T2 mapping reliably identifies
		  myocardial edema without the limitations encountered by
		  T2-weighted short tau inversion recovery imaging, and may
		  therefore be clinically more robust in showing acute
		  ischemic injury.},
  DOI		= {10.1016/j.jcmg.2010.09.023},
  Institution	= {The Ohio State University, Columbus, Ohio 43210, USA.},
  Keywords	= {Acute Disease; Aged; Case-Control Studies; Edema,
		  diagnosis/etiology/pathology/physiopathology; Female;
		  Humans; Magnetic Resonance Imaging, Cine; Male; Middle
		  Aged; Myocardial Ischemia,
		  complications/diagnosis/pathology/physiopathology;
		  Myocardium, pathology; Observer Variation; Ohio; Predictive
		  Value of Tests; Prospective Studies; Reproducibility of
		  Results; Stroke Volume; Ventricular Function, Left},
  Language	= {eng},
  medline-pst	= {ppublish},
  owner		= {stoeckc},
  pii		= {S1936-878X(11)00004-0},
  pmid		= {21414575},
  timestamp	= {2015.07.24},
  URL		= {http://dx.doi.org/10.1016/j.jcmg.2010.09.023}
}

@Article{	  vierendeels-00,
  Author	= {Vierendeels, J.A. and Riemslagh, K. and Dick, E. and
		  Verdonck, P.R.},
  Journal	= {J. Biomech. Eng. -- Trans. ASME 2000},
  Number	= {6},
  Pages		= {667--674},
  Title		= {Computer simulation of intraventricular flow and pressure
		  gradients during diastole},
  Volume	= {122},
  Year		= {2000}
}

###Article{	  vierendeels-00,
  Author	= {Vierendeels, J.A. and Riemslagh, K. and Dick, E. and
		  Verdonck, P.R.},
  Journal	= {J. Biomech. Eng. -- Trans. ASME 2000},
  Number	= {6},
  Pages		= {667--674},
  Title		= {Computer simulation of intraventricular flow and pressure
		  gradients during diastole},
  Volume	= {122},
  Year		= {2000}
}

@InProceedings{	  vierendeels-98,
  Author	= {Riemslagh, K. and Vierendeels, J.A. and Dick, },
  BookTitle	= {Computational Fluid Dynamics '98: Proceeding of the Fourth
		  European Computational fluid Dynamics Conference},
  Pages		= { 1040--1045},
  Title		= {Coupling of a {N}avier-{S}tokes solver and an elastic
		  boundary solver for unsteady problems},
  Volume	= {2},
  Year		= {1998}
}

###InProceedings{ vierendeels-98,
  Author	= {Riemslagh, K. and Vierendeels, J.A. and Dick, },
  BookTitle	= {Computational Fluid Dynamics '98: Proceeding of the Fourth
		  European Computational fluid Dynamics Conference},
  Pages		= { 1040--1045},
  Title		= {Coupling of a {N}avier-{S}tokes solver and an elastic
		  boundary solver for unsteady problems},
  Volume	= {2},
  Year		= {1998}
}

@Article{	  vignon-clementel_outflow_2010,
  Title		= {Outflow Boundary Conditions for {{3D}} Simulations of
		  Non-Periodic Blood Flow and Pressure Fields in Deformable
		  Arteries},
  Volume	= {13},
  Number	= {5},
  JournalTitle	= {Computer methods in biomechanics and biomedical
		  engineering},
  Year		= {2010},
  Pages		= {625--640},
  Author	= {Vignon-Clementel, Irene E. and Figueroa, C. A. and Jansen,
		  K. E. and Taylor, C. A.}
}

@Article{	  vignon_2006,
  Author	= "Vignon-Clementel, I.~E. and Figueroa, C.~A. and Jansen,
		  K.~E. and Taylor, C.~A.",
  Title		= "OutÃow boundary conditions for three-dimensional Ãnite
		  element modeling of blood Ãow and pressure in arteries",
  Journal	= "Comput. Methods Appl. Mech. Engrg.",
  Volume	= "195",
  Pages		= "3776Ã3796",
  Year		= "2006"
}

###Article{	  vignon_2006,
  Author	= "Vignon-Clementel, I.~E. and Figueroa, C.~A. and Jansen,
		  K.~E. and Taylor, C.~A.",
  Title		= "OutÃow boundary conditions for three-dimensional Ãnite
		  element modeling of blood Ãow and pressure in arteries",
  Journal	= "Comput. Methods Appl. Mech. Engrg.",
  Volume	= "195",
  Pages		= "3776Ã3796",
  Year		= "2006"
}

@Article{	  vignon_2010,
  Author	= "Vignon-Clementel, I.~E. and Figueroa, C.~A. and Jansen,
		  K.~E. and Taylor, C.~A.",
  Title		= {"Outflow boundary conditions for 3D simulations of
		  non-periodic blood flow and pressure fields in deformable
		  arteries"},
  Journal	= {Comp. Meth. Biomech. Biomed. Engrg.},
  Volume	= "13",
  Pages		= "625--640",
  Year		= "2010"
}

###Article{	  vignon_2010,
  Author	= "Vignon-Clementel, I.~E. and Figueroa, C.~A. and Jansen,
		  K.~E. and Taylor, C.~A.",
  Title		= {"Outflow boundary conditions for 3D simulations of
		  non-periodic blood flow and pressure fields in deformable
		  arteries"},
  Journal	= {Comp. Meth. Biomech. Biomed. Engrg.},
  Volume	= "13",
  Pages		= "625--640",
  Year		= "2010"
}

@Article{	  vignong-et-al-2011,
  affiliation	= {Mechanical and Aerospace Engineering Department,
		  University of California, San Diego, USA},
  Author	= {Esmaily Moghadam, M. and Bazilevs, Y. and Hsia, T.-Y. and
		  Vignon-Clementel, I. and Marsden, A. and Modeling of
		  Congenital Hearts Alliance},
  ISSN		= {0178-7675},
  Issue		= {3},
  Journal	= {Computational Mechanics},
  keyword	= {Engineering},
  Note		= {10.1007/s00466-011-0599-0},
  Pages		= {277-291},
  Title		= {A comparison of outlet boundary treatments for prevention
		  of backflow divergence with relevance to blood flow
		  simulations},
  Volume	= {48},
  Year		= {2011}
}

@PhdThesis{	  virues-08,
  Author	= {Virues, J.},
  School	= {The University of British Columbia},
  Title		= {{Mechanical Properties of Arterial Wall}},
  Year		= {2008}
}

###PhdThesis{	  virues-08,
  Author	= {Virues, J.},
  School	= {The University of British Columbia},
  Title		= {{Mechanical Properties of Arterial Wall}},
  Year		= {2008}
}

@Article{	  vitiello_complications_1998,
  Title		= {Complications Associated with Pediatric Cardiac
		  Catheterization},
  Volume	= {32},
  Number	= {5},
  JournalTitle	= {Journal of the American College of Cardiology},
  Year		= {1998},
  Pages		= {1433--1440},
  Author	= {Vitiello, Renato and McCrindle, Brian W. and Nykanen,
		  David and Freedom, Robert M. and Benson, Lee N.}
}

@Article{	  voelk-etal-05,
  Author	= {V\"olkl, Thomas and Degenhardt, Karin and Koch, Andreas
		  and Simm, Diemud and D\"orr, Helmuth and Singer, Helmut},
  Title		= {Cardiovascular anomalies in children and young adults with
		  Ullrich-Turner syndrome the Erlangen experience},
  Journal	= {Clinical Cardiology},
  Volume	= {28},
  Year		= {2005},
  Number	= {2},
  Pages		= {88-92},
  pubmedid	= {15757080},
  ISSN		= {0160-9289}
}

###Article{	  voelk-etal-05,
  Author	= {V\"olkl, Thomas and Degenhardt, Karin and Koch, Andreas
		  and Simm, Diemud and D\"orr, Helmuth and Singer, Helmut},
  Title		= {Cardiovascular anomalies in children and young adults with
		  Ullrich-Turner syndrome the Erlangen experience},
  Journal	= {Clinical Cardiology},
  Volume	= {28},
  Year		= {2005},
  Number	= {2},
  Pages		= {88-92},
  URL		= {http://www.biomedsearch.com/nih/Cardiovascular-anomalies-in-children-young/15757080.html},
  pubmedid	= {15757080},
  ISSN		= {0160-9289}
}

@Article{	  vriend2005,
  Title		= "Late complications in patients after repair of aortic
		  coarctation: implications for management ",
  Journal	= "International Journal of Cardiology ",
  Volume	= "101",
  Number	= "3",
  Pages		= "399 - 406",
  Year		= "2005",
  Note		= "",
  ISSN		= "0167-5273",
  DOI		= "http://dx.doi.org/10.1016/j.ijcard.2004.03.056",
  URL		= "http://www.sciencedirect.com/science/article/pii/S016752730400405X",
  Author	= "Joris W.J. Vriend and Barbara J.M. Mulder",
  Keywords	= "Hypertension ",
  Abstract	= "Survival of patients with aortic coarctation has
		  dramatically improved after surgical repair became
		  available and the number of patients who were operated and
		  reach adulthood is steadily increasing. However, life
		  expectancy is still not as normal as in unaffected peers.
		  Cardiovascular complications are frequent and require
		  indefinite follow-up. Concern falls chiefly in seven
		  categories: recoarctation, aortic aneurysm formation or
		  aortic dissection, coexisting bicuspid aortic valve,
		  endocarditis, premature coronary atherosclerosis,
		  cerebrovascular accidents and systemic hypertension. In
		  this review, these complications, with particular reference
		  to late hypertension, are discussed and strategies for the
		  clinical management of post-coarctectomy patients are
		  described. "
}

@Article{	  vsvihlova2016determination,
  Title		= {Determination of pressure data from velocity data with a
		  view toward its application in cardiovascular mechanics.
		  {P}art 1. {T}heoretical considerations},
  Author	= {{\v{S}}vihlov{\'a}, H and Hron, J and M{\'a}lek, J and
		  Rajagopal, KR and Rajagopal, K},
  Journal	= {International Journal of Engineering Science},
  Year		= {2016, In press},
  URL		= {http://www.sciencedirect.com/science/article/pii/S0020722515001858},
  Publisher	= {Elsevier}
}

###Article{	  vsvihlova2016determination,
  Title		= {Determination of pressure data from velocity data with a
		  view toward its application in cardiovascular mechanics.
		  {P}art 1. {T}heoretical considerations},
  Author	= {{\v{S}}vihlov{\'a}, H and Hron, J and M{\'a}lek, J and
		  Rajagopal, KR and Rajagopal, K},
  Journal	= {International Journal of Engineering Science},
  Year		= {2016, In press},
  Publisher	= {Elsevier}
}

@Article{	  wake_choice_2009,
  langid	= {english},
  Title		= {Choice of {{In Vivo Versus Idealized Velocity Boundary
		  Conditions Influences Physiologically Relevant Flow
		  Patterns}} in a {{Subject}}-{{Specific Simulation}} of
		  {{Flow}} in the {{Human Carotid Bifurcation}}},
  Volume	= {131},
  ISSN		= {01480731},
  URL		= {http://Biomechanical.asmedigitalcollection.asme.org/article.aspx?articleid=1421173},
  DOI		= {10.1115/1.3005157},
  Number	= {2},
  JournalTitle	= {Journal of Biomechanical Engineering},
  URLDate	= {2019-02-21},
  Year		= {2009},
  Pages		= {021013},
  Author	= {Wake, Amanda K. and Oshinski, John N. and Tannenbaum,
		  Allen R. and Giddens, Don P.}
}

@Article{	  walker2005jtcs,
  Title		= {Helical myofiber orientation after myocardial infarction
		  and left ventricular surgical restoration in sheep },
  Author	= {Joseph C. Walker and Julius M. Guccione and Yi Jiang and
		  Peng Zhang and Arthur W. Wallace and Edward W. Hsu and Mark
		  B. Ratcliffe},
  Journal	= {The Journal of Thoracic and Cardiovascular Surgery },
  Year		= {2005},
  Number	= {2},
  Pages		= {382 - 390},
  Volume	= {129},
  Abstract	= {Objectives It has been proposed that successful left
		  ventricular surgical restoration should restore normal
		  helical myofiber orientation. A magnetic resonance imaging
		  technique, magnetic resonance diffusion tensor imaging, has
		  been developed to measure myocyte orientation. By using
		  magnetic resonance diffusion tensor imaging, this study
		  tested the hypothesis that (1) myocyte orientation is
		  altered after anteroapical myocardial infarction and (2)
		  left ventricular surgical restoration restores normal helix
		  angles. Methods Thirteen sheep underwent anteroapical
		  myocardial infarction (25% of left ventricular mass). Ten
		  weeks later, animals underwent either aneurysm plication (n
		  = 8) or sham operations (n = 5). Six weeks after this
		  operation, hearts were excised, perfusion fixed in
		  diastole, and underwent magnetic resonance diffusion tensor
		  imaging. Hearts from normal sheep (n = 5) were also
		  harvested and imaged. Primary eigenvectors of the diffusion
		  tensors from magnetic resonance diffusion tensor imaging
		  were resolved into helix angles relative to a local wall
		  coordinate system. Transmural samples of the helix angles
		  were compared at the border zone of the aneurysm or repair
		  (or a comparable distance from the base in normal sheep), 1
		  cm below the valves, and halfway between. Results The
		  helical myofiber orientation did not change after
		  myocardial infarction. However, aneurysm plication caused
		  myofibers in the anterior border zone to rotate
		  counterclockwise (?35.6 Â± 10.5Â°, P = .028) and those in
		  the lateral border zone to rotate clockwise (34.4 Â± 8.1Â°,
		  P = .031). Conclusions Surgical restoration alters myocyte
		  orientation adjacent to the surgical repair. However,
		  myofiber orientation is not abnormal after myocardial
		  infarction, and thus surgical restoration techniques intent
		  on restoring normal helix angles might not be warranted. },
  DOI		= {http://dx.doi.org/10.1016/j.jtcvs.2004.06.006},
  File		= {walker05.pdf:walker05.pdf:PDF},
  ISSN		= {0022-5223},
  timestamp	= {2015/09/22},
  URL		= {http://www.sciencedirect.com/science/article/pii/S0022522304008359}
}

@InProceedings{	  wall-mok-ramm-99,
  Author	= {Mok, D. P. and Wall, W. A. and Ramm, E.},
  BookTitle	= {Proceedings of the European Conference on Computational
		  Mechanics},
  code		= {fsi5},
  Editor	= {W. Wunderlich},
  Publisher	= {ECCM'99, TU Munich},
  Title		= {Partitioned analysis approach for the transient, coupled
		  response of viscous fluids and flexible structures},
  Year		= {1999}
}

###InProceedings{ wall-mok-ramm-99,
  Author	= {Mok, D. P. and Wall, W. A. and Ramm, E.},
  BookTitle	= {Proceedings of the European Conference on Computational
		  Mechanics},
  code		= {fsi5},
  Editor	= {W. Wunderlich},
  Publisher	= {ECCM'99, TU Munich},
  Title		= {Partitioned analysis approach for the transient, coupled
		  response of viscous fluids and flexible structures},
  Year		= {1999}
}

@Article{	  wall2010baci,
  Title		= {Baci: a parallel multiphysics finite element environment},
  Author	= {Wall, WA and Gee, MW},
  Journal	= {Institute for Computational Mechanics, Technische
		  Universit{\"a}t M{\"u}nchen},
  Year		= {2010}
}

@Article{	  wall2010ijnmbe,
  Title		= {Towards a comprehensive computational model for the
		  respiratory system},
  Author	= {Wall, Wolfgang A and Wiechert, Lena and Comerford, Andrew
		  and Rausch, Sophie},
  Journal	= {International Journal for Numerical Methods in Biomedical
		  Engineering},
  Volume	= {26},
  Number	= {7},
  Pages		= {807--827},
  Year		= {2010},
  Publisher	= {Wiley Online Library}
}

@Article{	  wang2009,
  Title		= "Modelling passive diastolic mechanics with quantitative
		  MRI of cardiac structure and function",
  Journal	= "Medical Image Analysis",
  Volume	= "13",
  Number	= "5",
  Pages		= "773 - 784",
  Year		= "2009",
  Note		= "<ce:title>Includes Special Section on the 12th
		  International Conference on Medical Imaging and Computer
		  Assisted Intervention</ce:title>",
  ISSN		= "1361-8415",
  DOI		= "10.1016/j.media.2009.07.006",
  Author	= "Vicky Y. Wang and H.I. Lam and Daniel B. Ennis and Brett
		  R. Cowan and Alistair A. Young and Martyn P. Nash",
  Keywords	= "Material parameter estimation"
}

@Article{	  wang2011pulmonary,
  Title		= {Pulmonary vascular wall stiffness: an important
		  contributor to the increased right ventricular afterload
		  with pulmonary hypertension},
  Author	= {Wang, Zhijie and Chesler, Naomi C},
  Journal	= {Pulmonary circulation},
  Volume	= {1},
  Number	= {2},
  Pages		= {212--223},
  Year		= {2011},
  Publisher	= {SAGE Publications Sage UK: London, England}
}

@Article{	  wang2014bmmmb,
  Title		= {A modified Holzapfel-Ogden law for a residually stressed
		  finite strain model of the human left ventricle in
		  diastole},
  Author	= {Wang, HM and Luo, XY and Gao, H and Ogden, RW and
		  Griffith, BE and Berry, C and Wang, TJ},
  Journal	= {Biomechanics and modeling in mechanobiology},
  Volume	= {13},
  Number	= {1},
  Pages		= {99--113},
  Year		= {2014},
  Publisher	= {Springer}
}

@Article{	  warburton-hesthaven-03,
  Author	= {Warburton, T. and Hesthaven, J. S.},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Number	= {25},
  Pages		= {2765--2773},
  Title		= {On the constants in {$hp$}-finite element trace inverse
		  inequalities},
  Volume	= {192},
  Year		= {2003}
}

###Article{	  warburton-hesthaven-03,
  Author	= {Warburton, T. and Hesthaven, J. S.},
  Journal	= {Comput. Methods Appl. Mech. Engrg.},
  Number	= {25},
  Pages		= {2765--2773},
  Title		= {On the constants in {$hp$}-finite element trace inverse
		  inequalities},
  Volume	= {192},
  Year		= {2003}
}

@Article{	  warnes2008acc,
  Title		= {{ACC}/{AHA} 2008 Guidelines for the Management of Adults
		  With Congenital Heart Disease},
  Author	= {Warnes, Carole A and Williams, Roberta G and Bashore,
		  Thomas M and others},
  Journal	= {Journal of the American College of Cardiology},
  Volume	= {52},
  Number	= {23},
  Pages		= {e143--e263},
  Year		= {2008},
  Publisher	= {Am Coll Cardio Found}
}

###Article{	  warnes2008acc,
  Title		= {{ACC}/{AHA} 2008 Guidelines for the Management of Adults
		  With Congenital Heart Disease},
  Author	= {Warnes, Carole A and Williams, Roberta G and Bashore,
		  Thomas M and Child, John S and Connolly, Heidi M and
		  Dearani, Joseph A and del Nido, Pedro and Fasules, James W
		  and Graham, Thomas P and Hijazi, Ziyad M and others},
  Journal	= {Journal of the American College of Cardiology},
  Volume	= {52},
  Number	= {23},
  Pages		= {e143--e263},
  Year		= {2008},
  Publisher	= {Am Coll Cardio Found}
}

@Article{	  warnes_acc/aha_2008,
  Title		= {{{ACC}}/{{AHA}} 2008 {{Guidelines}} for the {{Management}}
		  of {{Adults With Congenital Heart Disease}}: {{Executive
		  Summary}}: {{A Report}} of the {{American College}} of
		  {{Cardiology}}/{{American Heart Association Task Force}} on
		  {{Practice Guidelines}} ({{Writing Committee}} to {{Develop
		  Guidelines}} for the {{Management}} of {{Adults With
		  Congenital Heart Disease}}) {{Developed}} in
		  {{Collaboration With}} the {{American Society}} of
		  {{Echocardiography}}, {{Heart Rhythm Society}},
		  {{International Society}} for {{Adult Congenital Heart
		  Disease}}, {{Society}} for {{Cardiovascular Angiography}}
		  and {{Interventions}}, and {{Society}} of {{Thoracic
		  Surgeons}}},
  ShortTitle	= {{{ACC}}/{{AHA}} 2008 {{Guidelines}} for the {{Management}}
		  of {{Adults With Congenital Heart Disease}}},
  Author	= {Warnes, Carole A. and Williams, Roberta G. and Bashore,
		  Thomas M. and Child, John S. and Connolly, Heidi M. and
		  Dearani, Joseph A. and Del Nido, Pedro and Fasules, James
		  W. and Graham, Thomas P. and Hijazi, Ziyad M.},
  Year		= {2008},
  Volume	= {52},
  Pages		= {1890--1947},
  Journal	= {Journal of the American College of Cardiology},
  Number	= {23}
}

@Article{	  watton2004bmm,
  Title		= {A mathematical model for the growth of the abdominal
		  aortic aneurysm},
  Author	= {Watton, P.N. and Hill, N.A. and Heil, M.},
  Journal	= {Biomechanics and Modeling in Mechanobiology},
  Year		= {2004},
  Number	= {2},
  Pages		= {98-113},
  Volume	= {3},
  DOI		= {10.1007/s10237-004-0052-9},
  ISSN		= {1617-7959},
  Language	= {English},
  Publisher	= {Springer-Verlag},
  timestamp	= {2015/09/22},
  URL		= {http://dx.doi.org/10.1007/s10237-004-0052-9}
}

@Article{	  watton2011bmm,
  Title		= {Modelling evolution and the evolving mechanical
		  environment of saccular cerebral aneurysms},
  Author	= {Watton, P.N. and Selimovic, A. and Raberger, N.B. and
		  Huang, P. and Holzapfel, G.A. and Ventikos, Y.},
  Journal	= {Biomechanics and Modeling in Mechanobiology},
  Year		= {2011},
  Number	= {1},
  Pages		= {109-132},
  Volume	= {10},
  DOI		= {10.1007/s10237-010-0221-y},
  ISSN		= {1617-7959},
  Keywords	= {Aneurysm; Finite elasticity; Cerebral; Growth;
		  Remodelling; Haemodynamics; Cyclic stretch; WSS; WSSG; OSI;
		  RRT},
  Language	= {English},
  Publisher	= {Springer-Verlag},
  timestamp	= {2015/09/22},
  URL		= {http://dx.doi.org/10.1007/s10237-010-0221-y}
}

@Article{	  wen_investigation_2010,
  Title		= {Investigation of Pulsatile Flowfield in Healthy Thoracic
		  Aorta Models},
  Author	= {Wen, Chih-Yung and Yang, An-Shik and Tseng, Li-Yu and
		  Chai, Jyh-Wen},
  Year		= {2010},
  Volume	= {38},
  Pages		= {391--402},
  Journal	= {Annals of biomedical engineering},
  Number	= {2}
}

@Article{	  wendell2012including,
  Title		= {Including aortic valve morphology in computational fluid
		  dynamics simulations: Initial findings and application to
		  aortic coarctation},
  Author	= {Wendell, D.C. and Samyn, M.M. and Cava, J.R. and Ellwein,
		  L.M. and Krolikowski, M.M. and Gandy, K.L. and Pelech, A.N.
		  and Shadden, S.C. and LaDisa, J.F.},
  Journal	= {Medical Engineering \& Physics},
  Year		= {2012},
  Abstract	= {Computational fluid dynamics (CFD) simulations quantifying
		  thoracic aortic flow patterns have not included
		  disturbances from the aortic valve (AoV). 80\% of patients
		  with aortic coarctation (CoA) have a bicuspid aortic valve
		  (BAV) which may cause adverse flow patterns contributing to
		  morbidity. Our objectives were to develop a method to
		  account for the AoV in CFD simulations, and quantify its
		  impact on local hemodynamics. The method developed
		  facilitates segmentation of the AoV, spatiotemporal
		  interpolation of segments, and anatomic positioning of
		  segments at the CFD model inlet. The AoV was included in
		  CFD model examples of a normal (tricuspid AoV) and a
		  post-surgical CoA patient (BAV). Velocity, turbulent
		  kinetic energy (TKE), time-averaged wall shear stress
		  (TAWSS), and oscillatory shear index (OSI) results were
		  compared to equivalent simulations using a plug inlet
		  profile. The plug inlet greatly underestimated TKE for both
		  examples. TAWSS differences extended throughout the
		  thoracic aorta for the CoA BAV, but were limited to the
		  arch for the normal example. OSI differences existed mainly
		  in the ascending aorta for both cases. The impact of AoV
		  can now be included with CFD simulations to identify
		  regions of deleterious hemodynamics thereby advancing
		  simulations of the thoracic aorta one step closer to
		  reality.},
  Publisher	= {Elsevier}
}

###Article{	  wendell2012including,
  Title		= {Including aortic valve morphology in computational fluid
		  dynamics simulations: Initial findings and application to
		  aortic coarctation},
  Author	= {Wendell, D.C. and Samyn, M.M. and Cava, J.R. and Ellwein,
		  L.M. and Krolikowski, M.M. and Gandy, K.L. and Pelech, A.N.
		  and Shadden, S.C. and LaDisa, J.F.},
  Journal	= {Medical Engineering \& Physics},
  Year		= {2012},
  Abstract	= {Computational fluid dynamics (CFD) simulations quantifying
		  thoracic aortic flow patterns have not included
		  disturbances from the aortic valve (AoV). 80\% of patients
		  with aortic coarctation (CoA) have a bicuspid aortic valve
		  (BAV) which may cause adverse flow patterns contributing to
		  morbidity. Our objectives were to develop a method to
		  account for the AoV in CFD simulations, and quantify its
		  impact on local hemodynamics. The method developed
		  facilitates segmentation of the AoV, spatiotemporal
		  interpolation of segments, and anatomic positioning of
		  segments at the CFD model inlet. The AoV was included in
		  CFD model examples of a normal (tricuspid AoV) and a
		  post-surgical CoA patient (BAV). Velocity, turbulent
		  kinetic energy (TKE), time-averaged wall shear stress
		  (TAWSS), and oscillatory shear index (OSI) results were
		  compared to equivalent simulations using a plug inlet
		  profile. The plug inlet greatly underestimated TKE for both
		  examples. TAWSS differences extended throughout the
		  thoracic aorta for the CoA BAV, but were limited to the
		  arch for the normal example. OSI differences existed mainly
		  in the ascending aorta for both cases. The impact of AoV
		  can now be included with CFD simulations to identify
		  regions of deleterious hemodynamics thereby advancing
		  simulations of the thoracic aorta one step closer to
		  reality.},
  Publisher	= {Elsevier}
}

@Article{	  westerhof_arterial_2009,
  Title		= {The Arterial Windkessel},
  Volume	= {47},
  Number	= {2},
  JournalTitle	= {Medical \& biological engineering \& computing},
  Year		= {2009},
  Pages		= {131--141},
  Author	= {Westerhof, Nico and Lankhaar, Jan-Willem and Westerhof,
		  Berend E.}
}

@Article{	  white1987circ,
  Title		= {Left ventricular end-systolic volume as the major
		  determinant of survival after recovery from myocardial
		  infarction.},
  Author	= {White, H D and Norris, R M and Brown, M A and Brandt, P W
		  and Whitlock, R M and Wild, C J},
  Journal	= {Circulation},
  Year		= {1987},
  Number	= {1},
  Pages		= {44-51},
  Volume	= {76},
  Abstract	= {Impairment of left ventricular function is the major
		  predictor of mortality after acute myocardial infarction,
		  but it is not known whether this is best described by
		  ejection fraction or by end-systolic or end-diastolic
		  volume. We measured volumes, ejection fractions, and
		  severity of coronary arterial occlusions and stenoses in
		  605 male patients under 60 years of age at 1 to 2 months
		  after a first (n = 443) or recurrent (n = 162) myocardial
		  infarction and followed these patients for a mean of 78
		  months for survivors (range 15 to 165 months). There were
		  101 cardiac deaths, 71 (70%) of which were sudden
		  (instantaneous or found dead). Multivariate analysis with
		  log rank testing and the Cox proportional hazards model
		  showed that end-systolic volume (chi 2 = 82.9) had greater
		  predictive value for survival than end-diastolic volume
		  (chi 2 = 59.0) or ejection fraction (chi 2 = 46.6), whereas
		  stepwise analysis showed that once the relationship between
		  survival and end-systolic volume had been fitted, there was
		  no additional significant predictive information in either
		  end-diastolic volume or ejection fraction. Severity of
		  coronary occlusions and stenoses showed additional
		  prediction of only borderline significance (p = .04 in one
		  analysis), but continued cigarette smoking did remain an
		  independent risk factor after stepwise analysis. For a
		  subset of patients (n = 200) who had taken part in a
		  randomized trial of coronary artery surgery after recovery
		  from infarction, surgical "intention to treat" showed no
		  predictive value.(ABSTRACT TRUNCATED AT 250 WORDS)},
  DOI		= {10.1161/01.CIR.76.1.44},
  EPrint	= {http://circ.ahajournals.org/content/76/1/44.full.pdf+html},
  File		= {white87.pdf:white87.pdf:PDF},
  timestamp	= {2015/09/13},
  URL		= {http://circ.ahajournals.org/content/76/1/44.abstract}
}

@Article{	  white2008lancet,
  Title		= {Acute myocardial infarction },
  Author	= {Harvey D White and Derek P Chew},
  Journal	= {The Lancet },
  Year		= {2008},
  Number	= {9638},
  Pages		= {570 - 584},
  Volume	= {372},
  Abstract	= {Summary Modern management of acute myocardial infarction
		  is built on a clinical evidence base drawn from many
		  studies undertaken over the past three decades. The
		  evolution in clinical practice has substantially reduced
		  mortality and morbidity associated with the condition. Key
		  to this success is the effective integration of
		  antithrombotic therapy combined with timely reperfusion,
		  either primary percutaneous coronary intervention or
		  fibrinolysis for ST-elevation myocardial infarction, and
		  invasive investigation and revascularisation for
		  non-ST-elevation myocardial infarction, underpinned by risk
		  stratification and optimised systems of care. After the
		  development of troponin assays for the detection of
		  myonecrosis, the universal definition and classification of
		  myocardial infarction now indicates the underlying
		  pathophysiology. Additionally, an increasing appreciation
		  of the importance of adverse events, such as bleeding, has
		  emerged. Remaining challenges include the effective
		  translation of this evidence to all patients with
		  myocardial infarction, especially to those not well
		  represented in clinical trials who remain at increased risk
		  of adverse events, such as elderly patients and those with
		  renal failure. On a global level, the epidemic of diabetes
		  and obesity in the developed world and the transition from
		  infectious diseases to cardiovascular disease in the
		  developing world will place an increasing demand on
		  health-care infrastructures required to deliver
		  time-dependent and resource-intensive care. This Seminar
		  discusses the underlying pathophysiology, evolving
		  perspectives on diagnosis, risk stratification, and the
		  invasive and pharmacological management of myocardial
		  infarction. },
  DOI		= {http://dx.doi.org/10.1016/S0140-6736(08)61237-4},
  File		= {white08.pdf:white08.pdf:PDF},
  ISSN		= {0140-6736},
  timestamp	= {2015/09/14},
  URL		= {http://www.sciencedirect.com/science/article/pii/S0140673608612374}
}

@Book{		  whitham-99,
  Address	= {New York},
  Author	= {Whitham, G. B.},
  Publisher	= {John Wiley \& Sons Inc.},
  Title		= {Linear and nonlinear waves},
  Year		= {1999}
}

###Book{	  whitham-99,
  Address	= {New York},
  Author	= {Whitham, G. B.},
  Publisher	= {John Wiley \& Sons Inc.},
  Title		= {Linear and nonlinear waves},
  Year		= {1999}
}

@Report{	  who_global_2018,
  Location	= {{Geneva}},
  Title		= {Global {{Heath Estimates}} 2016: {{Deaths}} by {{Cause}},
		  {{Age}}, {{Sex}}, by {{Country}} and by {{Region}},
		  2000--2016},
  Institution	= {{World Health Organization}},
  Year		= {2018},
  Author	= {{WHO}}
}

@Article{	  wick2011phd,
  Title		= {Adaptive finite element simulation of fluid-structure
		  interaction with application to heart-valve dynamics},
  Author	= {Wick, Thomas},
  Year		= {2011},
  Journal	= {Ph.D Thesis, University of Heidelberg}
}

@article{wick2020optimizationFSI,
  title={Optimization with nonstationary, nonlinear monolithic fluid-structure interaction},
  author={Wick, Thomas and Wollner, Winnifried},
  journal={International Journal for Numerical Methods in Engineering},
  year={2020},
  publisher={Wiley Online Library}
}

@Article{	  wiechert2009jem,
  Title		= {Modeling the mechanical behavior of lung tissue at the
		  microlevel},
  Author	= {Wiechert, Lena and Metzke, Robert and Wall, Wolfgang A},
  Journal	= {Journal of engineering mechanics},
  Volume	= {135},
  Number	= {5},
  Pages		= {434--438},
  Year		= {2009},
  Publisher	= {American Society of Civil Engineers}
}

@Article{	  wiegel-perelson-82,
  Annote	= {blood, aggregation, red cells, rouleaux},
  Author	= {Wiegel, F.W. and Perelson, A.S.},
  code		= {cel6},
  Journal	= {J. Stat. Phys.},
  Number	= {4},
  Pages		= {813-848},
  Title		= {Statistical mechanics of red blood cell aggregation: the
		  distribution of rouleaux in thermal equilibrium},
  Volume	= {29},
  Year		= {1982}
}

###Article{	  wiegel-perelson-82,
  Annote	= {blood, aggregation, red cells, rouleaux},
  Author	= {Wiegel, F.W. and Perelson, A.S.},
  code		= {cel6},
  Journal	= {J. Stat. Phys.},
  Number	= {4},
  Pages		= {813-848},
  Title		= {Statistical mechanics of red blood cell aggregation: the
		  distribution of rouleaux in thermal equilibrium},
  Volume	= {29},
  Year		= {1982}
}

@Article{	  wigstroem1996mrm,
  Title		= {Temporally resolved 3D phase-contrast imaging.},
  Author	= {Wigstr{\"{o}}m, L. and Sj{\"{o}}qvist, L. and Wranne, B.},
  Journal	= {Magn Reson Med},
  Year		= {1996},
  Month		= {Nov},
  Number	= {5},
  Pages		= {800--803},
  Volume	= {36},
  Abstract	= {A conventional 3D phase contrast acquisition generates
		  images with good spatial resolution, but often gives rise
		  to artifacts due to pulsatile flow. 2D cine phase contrast,
		  on the other hand, can register dynamic flow, but has a
		  poor spatial resolution perpendicular to the imaging plane.
		  A combination of both high spatial and temporal resolution
		  may be advantageous in some cases, both in quantitative
		  flow measurements and in MR angiography. The described 3D
		  cine phase contrast pulse sequence creates a temporally
		  resolved series of 3D data sets with velocity encoded
		  data.},
  Institution	= {Department of Clinical Physiology, Faculty of Health
		  Sciences, LinkÃ¶ping University, Sweden.},
  Keywords	= {Electrocardiography; Humans; Magnetic Resonance
		  Angiography, methods; Magnetic Resonance Imaging, Cine,
		  methods},
  Language	= {eng},
  medline-pst	= {ppublish},
  owner		= {stoeckc},
  pmid		= {8916033},
  timestamp	= {2015.07.28}
}

@Article{	  wilkins2017european,
  Title		= {European cardiovascular disease statistics 2017},
  Author	= {Wilkins, Elizabeth and Wilson, L and Wickramasinghe,
		  Kremlin and Bhatnagar, Prachi and Leal, Jose and
		  Luengo-Fernandez, Ramon and Burns, R and Rayner, Mike and
		  Townsend, Nick},
  Year		= {2017},
  Publisher	= {European Heart Network},
  Note		= {EHN Registration No 16416/93}
}

@Report{	  wilkins_european_2017,
  Title		= {European Cardiovascular Disease Statistics 2017},
  Year		= {2017},
  Author	= {Wilkins, Elizabeth and Wilson, L. and Wickramasinghe,
		  Kremlin and Bhatnagar, Prachi and Leal, Jose and
		  Luengo-Fernandez, Ramon and Burns, R. and Rayner, Mike and
		  Townsend, Nick},
  Institution = {European Heart Network},
  Location = {Brussels}
}

@InProceedings{	  wilson-wang-dutton-taylor-01,
  Address	= {London, UK},
  Author	= {Wilson,, Nathan and Wang,, Kenneth and Dutton,, Robert W.
		  and Taylor,, Charles},
  BookTitle	= {MICCAI '01: Proceedings of the 4th International
		  Conference on Medical Image Computing and Computer-Assisted
		  Intervention},
  date-added	= {2009-03-10 12:15:56 -0700},
  date-modified	= {2009-03-10 12:16:40 -0700},
  ISBN		= {3-540-42697-3},
  Pages		= {449--456},
  Publisher	= {Springer-Verlag},
  Title		= {A Software Framework for Creating Patient Specific
		  Geometric Models from Medical Imaging Data for Simulation
		  Based Medical Planning of Vascular Surgery},
  Year		= {2001}
}

###InProceedings{ wilson-wang-dutton-taylor-01,
  Address	= {London, UK},
  Author	= {Wilson,, Nathan and Wang,, Kenneth and Dutton,, Robert W.
		  and Taylor,, Charles},
  BookTitle	= {MICCAI '01: Proceedings of the 4th International
		  Conference on Medical Image Computing and Computer-Assisted
		  Intervention},
  date-added	= {2009-03-10 12:15:56 -0700},
  date-modified	= {2009-03-10 12:16:40 -0700},
  ISBN		= {3-540-42697-3},
  Pages		= {449--456},
  Publisher	= {Springer-Verlag},
  Title		= {A Software Framework for Creating Patient Specific
		  Geometric Models from Medical Imaging Data for Simulation
		  Based Medical Planning of Vascular Surgery},
  Year		= {2001}
}

@Article{	  wilson2012procrsoc,
  Title		= {Parametric study of effects of collagen turnover on the
		  natural history of abdominal aortic aneurysms},
  Author	= {Wilson, J. S. and Baek, S. and Humphrey, J. D.},
  Journal	= {Proceedings of the Royal Society of London A:
		  Mathematical, Physical and Engineering Sciences},
  Year		= {2012},
  Number	= {2150},
  Volume	= {469},
  Abstract	= {Abdominal aortic aneurysms (AAAs) are characterized by
		  significant changes in the architecture of the aortic wall,
		  notably, loss of functional elastin and smooth muscle.
		  Because collagen is the principal remaining load-bearing
		  constituent of the aneurysmal wall, its turnover must play
		  a fundamental role in the natural history of the lesion.
		  Nevertheless, detailed investigations of the effects of
		  different aspects of collagen turnover on AAA development
		  are lacking. A finite-element membrane model of the growth
		  and remodelling of idealized AAAs was thus used to
		  investigate parametrically four of the primary aspects of
		  collagen turnover: rates of production, half-life,
		  deposition stretch (prestretch) and material stiffness. The
		  predicted rates of aneurysmal expansion and spatio-temporal
		  changes in wall thickness, biaxial stresses and maximum
		  collagen fibre stretch at the apex of the lesion depended
		  strongly on all four factors, as did the predicted clinical
		  endpoints (i.e. arrest, progressive expansion or rupture).
		  Collagen turnover also affected the axial expansion,
		  largely due to mechanical changes within the shoulder
		  region of the lesion. We submit, therefore, that assessment
		  of rupture risk could be improved by future experiments
		  that delineate and quantify different aspects of
		  patient-specific collagen turnover and that such
		  understanding could lead to new targeted therapeutics.},
  DOI		= {10.1098/rspa.2012.0556},
  File		= {wilson12.pdf:wilson12.pdf:PDF},
  ISSN		= {1364-5021},
  Publisher	= {The Royal Society},
  timestamp	= {2015/09/22}
}

@Article{	  wipperman-1985,
  Author	= {Wippermann, F.K.},
  Journal	= {Journal of Fluid Mechanics},
  Pages		= {487--501},
  Title		= {On the fluid dynamics of the aortic valve},
  Volume	= {159},
  Year		= {1985}
}

###Article{	  wipperman-1985,
  Author	= {Wippermann, F.K.},
  Journal	= {Journal of Fluid Mechanics},
  Pages		= {487--501},
  Title		= {On the fluid dynamics of the aortic valve},
  Volume	= {159},
  Year		= {1985}
}

@Article{	  wong-kuhl-12,
  Author	= {Wong, J. and Kuhl, E.},
  Title		= {Generating fibre orientation maps in human heart models
		  using Poisson interpolation},
  Journal	= {Computer Methods in Biomechanics and Biomedical
		  Engineering},
  Pages		= {1-10},
  Year		= {2012}
}

@Article{	  wong2004ajc,
  Title		= {Relation of left ventricular sphericity to 10-year
		  survival after acute myocardial infarction },
  Author	= {Selwyn P. Wong and John K. French and Anna-Maria Lydon and
		  Samuel O.M. Manda and Wanzhen Gao and Noel G. Ashton and
		  Harvey D. White},
  Journal	= {The American Journal of Cardiology },
  Year		= {2004},
  Number	= {10},
  Pages		= {1270 - 1275},
  Volume	= {94},
  Abstract	= {After ST-elevation myocardial infarction, the association
		  between left ventricular sphericity (measured by biplane
		  ventriculography) and survival rate at a median of 6.5
		  years was determined in 825 patients. The highest tertileof
		  sphericity (vs the lowest and middle tertiles) was
		  associated with a decreased 10-year survival rate in
		  patients who had anterior myocardial infarction (p =
		  0.002), inferior myocardial infarction (p = 0.011),
		  Thrombolysis In Myocardial Infarction (TIMI) grade 3 flow
		  (p = 0.005), or \{TIMI\} grade 0 to 2 flow (p = 0.001) in
		  the infarct artery. The independent multivariate predictors
		  of a 10-year survival rate were ejection fraction (p =
		  0.002), treadmill exercise duration (p = 0.004), biplane
		  left ventricular sphericity index (p = 0.032), age (p =
		  0.043), and end-systolic volume index (p = 0.047), but not
		  \{TIMI\} flow grade. },
  DOI		= {http://dx.doi.org/10.1016/j.amjcard.2004.07.110},
  File		= {wong04.pdf:wong04.pdf:PDF},
  ISSN		= {0002-9149},
  timestamp	= {2015/09/20},
  URL		= {http://www.sciencedirect.com/science/article/pii/S000291490401224X}
}

@Article{	  woodrum_romano_lerman_pandya_brosh_rossman_lerman_ehman_2006,
  Title		= {Vascular wall elasticity measurement by magnetic resonance
		  imaging.},
  Volume	= {56},
  Number	= {3},
  Journal	= {Magnetic Resonance in Medicine},
  Author	= {Woodrum, D.A. and Romano, A.J. and Lerman, A. and Pandya,
		  U.H. and Brosh, D. and Rossman, P.J. and Lerman, L.O. and
		  Ehman, R.L.},
  Year		= {2006},
  Pages		= {593--600}
}

###Article{	  woodrum_romano_lerman_pandya_brosh_rossman_lerman_ehman_2006,
  Title		= {Vascular wall elasticity measurement by magnetic resonance
		  imaging.},
  Volume	= {56},
  URL		= {http://www.scopus.com/inward/record.url?eid=2-s2.0-33748338132&partnerID=40&md5=87accf007d9aa1c5f05229d032bb4998},
  Number	= {3},
  Journal	= {Magnetic Resonance in Medicine},
  Author	= {Woodrum, D.A. and Romano, A.J. and Lerman, A. and Pandya,
		  U.H. and Brosh, D. and Rossman, P.J. and Lerman, L.O. and
		  Ehman, R.L.},
  Year		= {2006},
  Pages		= {593--600}
}

@Article{	  wu2007mrm,
  Title		= {MR diffusion tensor imaging study of postinfarct
		  myocardium structural remodeling in a porcine model.},
  Author	= {Wu, Ed X. and Wu, Yin and Nicholls, John M. and Wang, Jie
		  and Liao, Songyan and Zhu, Shuguang and Lau, Chu-Pak and
		  Tse, Hung-Fat},
  Journal	= {Magn Reson Med},
  Year		= {2007},
  Month		= {Oct},
  Number	= {4},
  Pages		= {687--695},
  Volume	= {58},
  __markedentry	= {[stoeckc:]},
  Abstract	= {This study aimed to investigate postinfarct left
		  ventricular (LV) fiber structural alterations by ex vivo
		  diffusion tensor imaging (DTI) in a porcine heart model. In
		  vivo cardiac MR imaging was first performed to measure
		  ventricular function in six adult pigs with septal
		  infarction near apex induced by the LAD ligation 13 weeks
		  earlier. Hearts were then excised from the infarct pigs (n
		  = 6) and six intact controls (n = 6) and fixed in formalin.
		  High-resolution DTI was employed to examine changes in
		  fractional anisotropy (FA), apparent diffusion coefficient
		  (ADC), and transmural helix angle distribution in the
		  infarct, adjacent and remote regions as compared to the
		  sham regions in the controls. FA values were found to
		  decrease in the infarct and differ between the adjacent and
		  remote regions. ADC increase in the infarct region was
		  substantial, while changes in the adjacent and remote
		  regions were insignificant. Structurally, the double-helix
		  myocardial structure shifted toward more left-handed around
		  the infarcted myocardium. Accordingly, the histological
		  analysis revealed clear fiber structural degradation in the
		  adjacent region. These findings confirmed the subtle
		  alterations in the myocardial fiber quality and structure
		  not only in the infarcted but also in the surrounding
		  noninfarcted myocardium or borderzone.},
  DOI		= {10.1002/mrm.21350},
  Institution	= {Laboratory of Biomedical Imaging and Signal Processing,
		  University of Hong Kong, Hong Kong. ewu@eee.hku.hk},
  Keywords	= {Animals; Anisotropy; Diffusion Magnetic Resonance Imaging;
		  Disease Models, Animal; Myocardial Infarction, pathology;
		  Swine; Swine, Miniature; Ventricular Remodeling,
		  physiology},
  Language	= {eng},
  medline-pst	= {ppublish},
  owner		= {stoeckc},
  pmid		= {17899595},
  timestamp	= {2015.07.28},
  URL		= {http://dx.doi.org/10.1002/mrm.21350}
}

@Article{	  wu2009cci,
  Title		= {Sequential changes of myocardial microstructure in
		  patients postmyocardial infarction by diffusion-tensor
		  cardiac MR: correlation with left ventricular structure and
		  function.},
  Author	= {Wu, Ming-Ting and Su, Mao-Yuan M. and Huang, Yi-Luan and
		  Chiou, Kuan-Rau and Yang, Pinchen and Pan, Huay-Ben and
		  Reese, Timothy G. and Wedeen, Van J. and Tseng, Wen-Yih
		  I.},
  Journal	= {Circ Cardiovasc Imaging},
  Year		= {2009},
  Month		= {Jan},
  Number	= {1},
  Pages		= {32--40, 6 p following 40},
  Volume	= {2},
  __markedentry	= {[stoeckc:6]},
  Abstract	= {We used diffusion-tensor cardiac MR to investigate
		  myocardial microstructure changes, including tissue
		  integrity (mean diffusivity [MD], fractional anisotropy)
		  and fiber architecture (helix angles) in patients with
		  recent myocardial infarction (MI). This study aimed to
		  investigate the sequential changes of myocardial
		  microstructure and its relationships with changes of
		  macrostructure and function of the left ventricle
		  post-MI.Seventeen patients (age, 55.1+/-11.5 years; all
		  men) participated in the follow-up study. Diffusion-tensor
		  cardiac MR, cine gradient echo for left ventricle function,
		  and late gadolinium enhancement for viability were measured
		  from recent to chronic MI (median interval, 191 days). When
		  compared with the remote zone, the infarct-adjacent zone
		  showed overall increase of MD (2-way MANOVA, F(1,16)=36.3;
		  P<0.001), decrease of fractional anisotropy (F(1,16)=5.8;
		  P=0.029), and decrease of mean helix angles (F(1,16)=62.0;
		  P<0.001). From recent to chronic MI, there was overall
		  sequential decrease of MD (F(1,16)=22.6; P<0.001) and
		  increase of fractional anisotropy (F(1,16)=7.8; P=0.013).
		  Multiple linear regression showed that the improvement of
		  wall thickening in the infarct-adjacent zone correlated
		  with sequential decrease of MD in the infarct-adjacent zone
		  (r=-0.70; P=0.002) and increase of mean helix angles (ie,
		  more right-handed helical myofiber reorientation,
		  predominantly subendocardial location) in the remote zone
		  (r=0.60; P=0.011). Likewise, wall thickening in the remote
		  zone correlated with MD in the remote zone (r=-0.72;
		  P=0.001) and mean helix angles in the infarct-adjacent zone
		  (r=0.72; P=0.001).Diffusion-tensor cardiac MR suggests that
		  sequential zonal improvement of tissue integrity and fiber
		  architecture remodeling both associate with sequential
		  recovery of zonal wall thickening of the left ventricle
		  from recent to chronic MI.},
  DOI		= {10.1161/CIRCIMAGING.108.778902},
  Institution	= {Faculty of Medicine, School of Medicine, National Yang
		  Ming University, Taipei, Taiwan, Republic of China.
		  wu.mingting@gmail.com},
  Keywords	= {Aged; Diffusion Magnetic Resonance Imaging; Heart
		  Ventricles, pathology; Humans; Male; Middle Aged;
		  Myocardial Infarction, pathology/physiopathology;
		  Ventricular Function, Left; Ventricular Remodeling},
  Language	= {eng},
  medline-pst	= {ppublish},
  owner		= {stoeckc},
  pii		= {2/1/32},
  pmid		= {19808562},
  timestamp	= {2015.07.28},
  URL		= {http://dx.doi.org/10.1161/CIRCIMAGING.108.778902}
}

@Article{	  wyman_current_1988,
  Title		= {Current Complications of Diagnostic and Therapeutic
		  Cardiac Catheterization},
  Volume	= {12},
  Number	= {6},
  JournalTitle	= {Journal of the American College of Cardiology},
  Year		= {1988},
  Pages		= {1400--1406},
  Author	= {Wyman, R. Michael and Safian, Robert D. and Portway,
		  Valerie and Skillman, John J. and McKAY, RAYMOND G. and
		  Baim, Donald S.}
}

@Article{	  xi-etal-2012,
  Title		= "The estimation of patient-specific cardiac diastolic
		  functions from clinical measurements",
  Journal	= "Medical Image Analysis ",
  Volume	= "17",
  Number	= "2",
  Pages		= "133 - 146",
  Year		= "2013",
  Note		= "",
  ISSN		= "1361-8415",
  DOI		= "http://dx.doi.org/10.1016/j.media.2012.08.001",
  URL		= "http://www.sciencedirect.com/science/article/pii/S1361841512001004",
  Author	= "Xi, J. and Lamata, P. and Niederer, S. and Land, S. and
		  Shi, W. and Zhuang, X. and Ourselin, S. and Duckett, S. G.
		  and Shetty, A. K. and Rinaldi, C. A. and Rueckert, D. and
		  Razavi, R. and Smith, N. P.",
  Keywords	= "Diastolic heart failure"
}

@Article{	  xi-moireau-chapelle-smith-11,
  Author	= {Xi, J. and Lamata, P. and Lee, J. and Moireau, P. and
		  Chapelle, D. and Smith, N.},
  date-added	= {2011-06-17 18:47:48 +0200},
  date-modified	= {2011-06-17 19:01:34 +0200},
  Journal	= {Journal of the Mechanical Behavior of Biomedical
		  Materials},
  Title		= {Myocardial transversely isotropic material parameter
		  estimation from in-silico measurements based on
		  reduced-order unscented Kalman filter},
  Year		= {2011}
}

###Article{	  xi-moireau-chapelle-smith-11,
  Author	= {Xi, J. and Lamata, P. and Lee, J. and Moireau, P. and
		  Chapelle, D. and Smith, N.},
  date-added	= {2011-06-17 18:47:48 +0200},
  date-modified	= {2011-06-17 19:01:34 +0200},
  Journal	= {Journal of the Mechanical Behavior of Biomedical
		  Materials},
  Title		= {Myocardial transversely isotropic material parameter
		  estimation from in-silico measurements based on
		  reduced-order unscented Kalman filter},
  Year		= {2011}
}

@Article{	  xie2013circ,
  Title		= {Pathological Ventricular Remodeling: Therapies: Part 2 of
		  2},
  Author	= {Xie, Min and Burchfield, Jana S. and Hill, Joseph A.},
  Journal	= {Circulation},
  Year		= {2013},
  Number	= {9},
  Pages		= {1021-1030},
  Volume	= {128},
  DOI		= {10.1161/CIRCULATIONAHA.113.001879},
  EPrint	= {http://circ.ahajournals.org/content/128/9/1021.full.pdf+html},
  File		= {xie13.pdf:xie13.pdf:PDF},
  timestamp	= {2015/09/20},
  URL		= {http://circ.ahajournals.org/content/128/9/1021.short}
}

@Article{	  xu2011ass,
  Title		= {Assessment of stiffness changes in the ex vivo porcine
		  aortic wall using magnetic resonance elastography.},
  Author	= {Xu, L. and Chen, J. and Yin, M. and Glaser, K.J. and Chen,
		  Q. and Woodrum, D.A. and Ehman, R.L.},
  Journal	= {Magnetic Resonance Imaging},
  Year		= {2012},
  Volume	= {30},
  Pages		= {122--127},
  Abstract	= {Magnetic resonance elastography (MRE) is a noninvasive
		  phase-contrast technique for estimating the mechanical
		  properties of tissues by imaging propagating mechanical
		  waves within the tissue. In this study, we hypothesize that
		  changes in arterial wall stiffness, experimentally induced
		  by formalin fixation, can be measured using MRE in ex vivo
		  porcine aortas. In agreement with our hypothesis, the
		  significant stiffness increase after sample fixation was
		  clearly demonstrated by MRE and confirmed by mechanical
		  testing. The results indicate that MRE can be used to
		  examine the stiffness changes of the aorta. This study has
		  provided evidence of the effectiveness of using MRE to
		  directly assess the stiffness change in aortic wall. The
		  results offer motivation to pursue MRE as a noninvasive
		  method for the evaluation of arterial wall mechanical
		  properties. }
}

###Article{	  xu2011ass,
  Title		= {Assessment of stiffness changes in the ex vivo porcine
		  aortic wall using magnetic resonance elastography.},
  Author	= {Xu, L. and Chen, J. and Yin, M. and Glaser, K.J. and Chen,
		  Q. and Woodrum, D.A. and Ehman, R.L.},
  Journal	= {Magnetic Resonance Imaging},
  Year		= {2012},
  Volume	= {30},
  Pages		= {122--127},
  Abstract	= {Magnetic resonance elastography (MRE) is a noninvasive
		  phase-contrast technique for estimating the mechanical
		  properties of tissues by imaging propagating mechanical
		  waves within the tissue. In this study, we hypothesize that
		  changes in arterial wall stiffness, experimentally induced
		  by formalin fixation, can be measured using MRE in ex vivo
		  porcine aortas. In agreement with our hypothesis, the
		  significant stiffness increase after sample fixation was
		  clearly demonstrated by MRE and confirmed by mechanical
		  testing. The results indicate that MRE can be used to
		  examine the stiffness changes of the aorta. This study has
		  provided evidence of the effectiveness of using MRE to
		  directly assess the stiffness change in aortic wall. The
		  results offer motivation to pursue MRE as a noninvasive
		  method for the evaluation of arterial wall mechanical
		  properties. }
}

@Article{	  yang_computation_1996,
  Title		= {Computation of Flow Pressure Fields from Magnetic
		  Resonance Velocity Mapping},
  Volume	= {36},
  Number	= {4},
  JournalTitle	= {Magnetic resonance in medicine},
  Year		= {1996},
  Pages		= {520--526},
  Author	= {Yang, Guang-Zhong and Kilner, Philip J. and Wood, Nigel B.
		  and Underwood, S. Richard and Firmin, David N.}
}

@Article{	  zeinali-davarani2011cmbbe,
  Title		= {A finite element model of stress-mediated vascular
		  adaptation: application to abdominal aortic aneurysms},
  Author	= { Shahrokh Zeinali-Davarani and Azadeh Sheidaei and Seungik
		  Baek },
  Journal	= {Computer Methods in Biomechanics and Biomedical
		  Engineering},
  Year		= {2011},
  Number	= {9},
  Pages		= {803-817},
  Volume	= {14},
  DOI		= {10.1080/10255842.2010.495344},
  EPrint	= { http://dx.doi.org/10.1080/10255842.2010.495344
		  
		  },
  File		= {zeinali-davarani11.pdf:zeinali-davarani11.pdf:PDF},
  URL		= { http://dx.doi.org/10.1080/10255842.2010.495344
		  
		  }
}

@Article{	  zeinali-davarani_raguin_vorp_baek_2010,
  Title		= {Identification of in vivo material and geometric
		  parameters of a human aorta: toward patient-specific
		  modeling of abdominal aortic aneurysm.},
  Volume	= {10},
  Number	= {5},
  Journal	= {Biomechanics and Modeling in Mechanobiology},
  Author	= {Zeinali-Davarani, S. and Raguin, L.G. and Vorp, D.A. and
		  Baek, S.},
  Year		= {2010},
  Pages		= {689--99}
}

###Article{	  zeinali-davarani_raguin_vorp_baek_2010,
  Title		= {Identification of in vivo material and geometric
		  parameters of a human aorta: toward patient-specific
		  modeling of abdominal aortic aneurysm.},
  Volume	= {10},
  URL		= {http://www.ncbi.nlm.nih.gov/pubmed/21053043},
  Number	= {5},
  Journal	= {Biomechanics and Modeling in Mechanobiology},
  Author	= {Zeinali-Davarani, S. and Raguin, L.G. and Vorp, D.A. and
		  Baek, S.},
  Year		= {2010},
  Pages		= {689--99}
}

@InProceedings{	  zhang-bathe-01,
  Author	= {Zhang, H. and Bathe, K.J. },
  BookTitle	= {Computational Fluid and Solid Mechanics},
  code		= {fsi15},
  Editor	= {K.J. Bathe},
  Pages		= {1440-1443},
  Publisher	= {Elsevier},
  Title		= {Direct and iterative computing of fluid flows fully
		  coupled with structures},
  Year		= {2001}
}

###InProceedings{ zhang-bathe-01,
  Author	= {Zhang, H. and Bathe, K.J. },
  BookTitle	= {Computational Fluid and Solid Mechanics},
  code		= {fsi15},
  Editor	= {K.J. Bathe},
  Pages		= {1440-1443},
  Publisher	= {Elsevier},
  Title		= {Direct and iterative computing of fluid flows fully
		  coupled with structures},
  Year		= {2001}
}

@Article{	  zhang-kuang-00,
  Author	= {Zhang, J.B. and Kuang, Z.B.},
  Journal	= {Jour. of Biomechanics},
  Pages		= {355-360},
  Title		= {Study on blood constitutive parameters in different blood
		  constitutive equations},
  Volume	= {33},
  Year		= {2000}
}

###Article{	  zhang-kuang-00,
  Author	= {Zhang, J.B. and Kuang, Z.B.},
  Journal	= {Jour. of Biomechanics},
  Pages		= {355-360},
  Title		= {Study on blood constitutive parameters in different blood
		  constitutive equations},
  Volume	= {33},
  Year		= {2000}
}

@Article{	  zhang-zhang-eal-03,
  Author	= {Zhang, H. and Zhang, X. and Ji, S. and Guo, Y. and
		  Ledezma, G. and Elabbasi, N. and deCougny, H.},
  Journal	= {Comp. \& Struct.},
  Number	= {8--11},
  Pages		= {1071--1085},
  Title		= {Recent development of fluid-structure interaction
		  capabilities in the {ADINA} system},
  Volume	= {81},
  Year		= {2003}
}

###Article{	  zhang-zhang-eal-03,
  Author	= {Zhang, H. and Zhang, X. and Ji, S. and Guo, Y. and
		  Ledezma, G. and Elabbasi, N. and deCougny, H.},
  Journal	= {Comp. \& Struct.},
  Number	= {8--11},
  Pages		= {1071--1085},
  Title		= {Recent development of fluid-structure interaction
		  capabilities in the {ADINA} system},
  Volume	= {81},
  Year		= {2003}
}

@Article{	  zhang-zhao-01,
  Author	= {Zhang, B. and Zhao, Y.},
  code		= {por15},
  Journal	= {Int. J. Numer. Meth. Engng},
  Pages		= {2443-2457},
  Title		= {Simulations of flow through fluid/porous layers by a
		  characteristic-based method on unstructured grids},
  Volume	= {50},
  Year		= {2001}
}

###Article{	  zhang-zhao-01,
  Author	= {Zhang, B. and Zhao, Y.},
  code		= {por15},
  Journal	= {Int. J. Numer. Meth. Engng},
  Pages		= {2443-2457},
  Title		= {Simulations of flow through fluid/porous layers by a
		  characteristic-based method on unstructured grids},
  Volume	= {50},
  Year		= {2001}
}

@Article{	  zhang-zuazua-07,
  Author	= {Zhang, X. and Zuazua, E.},
  date-added	= {2012-02-27 13:53:27 +0000},
  date-modified	= {2012-02-27 13:53:55 +0000},
  DOI		= {10.1007/s00205-006-0020-x},
  Journal	= {Arch. Ration. Mech. Anal.},
  Number	= {1},
  Pages		= {49--120},
  Title		= {Long-time behavior of a coupled heat-wave system arising
		  in fluid-structure interaction},
  Volume	= {184},
  Year		= {2007}
}

###Article{	  zhang-zuazua-07,
  Author	= {Zhang, X. and Zuazua, E.},
  date-added	= {2012-02-27 13:53:27 +0000},
  date-modified	= {2012-02-27 13:53:55 +0000},
  DOI		= {10.1007/s00205-006-0020-x},
  Journal	= {Arch. Ration. Mech. Anal.},
  Number	= {1},
  Pages		= {49--120},
  Title		= {Long-time behavior of a coupled heat-wave system arising
		  in fluid-structure interaction},
  Volume	= {184},
  Year		= {2007},
  bdsk-url-1	= {http://dx.doi.org/10.1007/s00205-006-0020-x}
}

@Article{	  zhu-quartapelle-loula-96,
  Author	= {Zhu, J. and Quartapelle, L. and Loula, A.F.D.},
  Journal	= {C. R. Acad. Sci. Paris, s{\'e}rie 1},
  Pages		= {971-976},
  Title		= {{Uncoupled variational formulation of a vector Poisson
		  problem}},
  Volume	= {323},
  Year		= {1996}
}

###Article{	  zhu-quartapelle-loula-96,
  Author	= {Zhu, J. and Quartapelle, L. and Loula, A.F.D.},
  Journal	= {C. R. Acad. Sci. Paris, s{\'e}rie 1},
  Pages		= {971-976},
  Title		= {{Uncoupled variational formulation of a vector Poisson
		  problem}},
  Volume	= {323},
  Year		= {1996}
}

@Unpublished{	  zhu2,
  Author	= {Zhu, J. and Loula, A.F.D. and Quartapelle, L.},
  Title		= {Finite element analysis of a nonstandard vector poisson
		  problem}
}

###Unpublished{	  zhu2,
  Author	= {Zhu, J. and Loula, A.F.D. and Quartapelle, L.},
  Note		= {Preprint},
  Title		= {Finite element analysis of a nonstandard vector poisson
		  problem}
}

@Article{	  zienkiewicz-smeler-peraire-90,
  Author	= {Zienkiewicz, O.C. and Smeler, J. and Peraire, J.},
  Journal	= {Comp. Meth. Appl. Mech. Engng.},
  Pages		= {105-121},
  Title		= {Compressible and incompressible flow ; an algorithm for
		  all seasons},
  Volume	= {78},
  Year		= {1990}
}

###Article{	  zienkiewicz-smeler-peraire-90,
  Author	= {Zienkiewicz, O.C. and Smeler, J. and Peraire, J.},
  Journal	= {Comp. Meth. Appl. Mech. Engng.},
  Pages		= {105-121},
  Title		= {Compressible and incompressible flow ; an algorithm for
		  all seasons},
  Volume	= {78},
  Year		= {1990}
}

@Article{	  zilberszac2017asymptomatic,
  Title		= {Asymptomatic severe aortic stenosis in the elderly},
  Author	= {Zilberszac, R. and Gabriel, H. and Schemper, M. and
		  Laufer, G. and Maurer, G. and Rosenhek, R.},
  Journal	= {JACC: Cardiovascular Imaging},
  Volume	= {10},
  Number	= {1},
  Pages		= {43--50},
  Year		= {2017},
  Publisher	= {Elsevier}
}
