diff --git a/.gitignore b/.gitignore
index 5c2376f..f93c9a0 100644
--- a/.gitignore
+++ b/.gitignore
@@ -32,7 +32,10 @@ MANIFEST
*.sh
# TeX exceptions
-!/tex/*.png
+!/tex/**/*.png
+
+# published article exception
+!article_published.pdf
# Generated results from FEniCS/Python plots, etc...
*.xdmf
@@ -40,7 +43,7 @@ MANIFEST
*.pyc
# Jupyter checkpoints
-#*.ipynb
+*.ipynb
.ipynb_checkpoints/
# Numerical results
@@ -48,3 +51,15 @@ tests/
# Paraview state files
*.pvsm
+
+*.aux
+*.log
+*.pdf
+*.synctex.gz
+*.sh
+
+# Submission 1
+**/*.synctex.gz
+**/*.log
+**/*.aux
+**/*.pdf
\ No newline at end of file
diff --git a/conferences/cbme2022/CMBE21_ale.tex b/conferences/cbme2022/CMBE21_ale.tex
new file mode 100644
index 0000000..dce26a1
--- /dev/null
+++ b/conferences/cbme2022/CMBE21_ale.tex
@@ -0,0 +1,112 @@
+
+%% CMBE TEMPLATE FOR ABSTRACT SUBMISSION
+%% USE CLASS cmbe17.cls ** DO NOT MODIFY CLASS FILE **
+
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+% The extended abstract should consist of a short abstract (SUMMARY)
+% and 2-4 keywords, followed by a short article. The length of the
+% extended abstract must not be longer than four pages incl. references.
+%
+% Guidelines to complete each section are provided below.
+% References are managed using thebibliography with cite_key and
+% the \bibitem{cite_key} command. Make sure they are arranged by
+% order of appearance in the text. ** No page numbering.
+%
+%
+% Consult the conference website for submission information.
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+
+\documentclass{cmbe21}
+% additional packages
+\usepackage{amsmath,amsfonts,amssymb}
+\usepackage{graphicx,wrapfig}
+% comment if not needed
+\usepackage[hyphens]{url}
+\usepackage{hyperref}
+
+
+% TITLE: replace text with your abstract title WITHOUT full stop
+\title{On monolithic and Chorin-Temam schemes for incompressible flows in moving domains.}
+% AUTHOR/AFFILIATION: handled by authblk.
+% Use only one of the two following methods for author listing. Delete or comment out the other.
+% Add/remove authors/affiliations as necessary, complete following the template without adding additional superscript/footnotes
+
+% 1- Authors have the same affiliation:
+% ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+%\author{First A. Author}
+%\author{Second B. Author}
+%\author{Third C. Author}
+%\affil{Affiliation, Postal Address, \texttt{\{First,Second,Third\}@affil}}
+
+% 2- Multiple authors with multiple affiliations. Complete as follows: author[i] <-> affiliation[i]
+% ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+%\author[1]{Jerem\'ias Garay}
+%\author[2]{Second B. Author}
+%\author[3]{Third C. Author}
+%\author[2]{Fourth D. Author}
+
+
+
+% \author[1]{Jerem\'ias Garay}
+\author[1]{Reidmen Ar\'ostica}
+% \author[1]{David Nolte}
+\author[1]{Crist\'obal Bertoglio}
+
+\affil[1]{{Bernoulli Institute}, {University of Groningen},
+{Groningen}, The Netherlands}
+%\affil[cmm]{{Center for Mathematical Modeling}, {Universidad de Chile}, {Santiago}, Chile}
+%\affil[tub]{{Department of Fluid Dynamics}, {Technische Universit\"at Berlin}, {Berlin}, Germany}
+
+%\affil[2]{{Bernoulli Institute}, {University of Groningen},
+%{Groningen}, The Netherlands}
+
+%\affil[2]{{Biomedical Imaging Center}, {Pontificia Universidad Cat\'olica de Chile},
+%{Santiago}, Chile}
+
+
+%\affil[3]{{School of Biomedical Engineering}, {Universidad de Valparaiso},
+%{Valparaiso}, Chile}
+%
+%\affil[4]{{Department of Mathematical Engineering}, {Universidad de Concepci\'on},
+%{Concepci\'on}, Chile}
+%
+%
+%\affil[5]{{Department of Mechanical Engineering}, {Universidad T\'ecnica Federico Santa Mar\'ia},
+%{Santiago}, Chile}
+%
+%\affil[6]{{Joint last authors}, {in alphabetical order}}
+
+
+
+
+%\affil[1]{Affiliation 1, Postal Address, \texttt{First@affil1}}
+%\affil[2]{Affiliation 2, Postal Address, \texttt{\{Second,Fourth\}@affil2}}
+%\affil[3]{Affiliation 3, Postal Address, \texttt{Third@affil3}}
+
+
+
+
+
+% SUMMARY: replace text with a short summary
+\summary{Several time discretized domain for the incompressible Navier-Stokes equations (iNSE) in moving domains have been proposed in literature. Here, we introduce a unified formulation that combines different approaches found in literature, allowing a common well posedness and time stability analysis. It can be therefore shown that only a particular choice of numerical schemes ensure such properties under some restrictions. The analysis will be shown for Chorin-Temam schemes using the insight found in the monolithic case. Results are supported from numerical simulations and its usage in fluid-solid interaction problems will be presented.}
+
+% KEYWORDS: replace text with 2-4 keywords, not capitalised, separated by comma, and without a full stop at the end.
+\keywords{numerical schemes, stability analysis, incompressible flows, fluid-structure interaction}
+
+
+\begin{document}
+Estimating parameters from heart contraction data, using e.g. magnetic resonance imaging \cite{imperiale2021tagged, markl20124d, marchesseau2013fast, marchesseau2013regionalvols}, requires several techniques such as the estimation algorithms, e.g. \cite{pfaller2020pod}, fluid-solid coupling schemes modeling the physics itself e.g. \cite{astorino-chouly-fernandez-09, bertoglio2013sisc} and in particular, the discretization of fluid problem arising from the blood movement e.g. \cite{bevan2016comparative}.
+
+In such a context, several works have been reported dealing with numerical solutions of the iNSE in moving domains within the Arbitrary Lagrangian Eulerian formulation (ALE). Different choices of time discretization have been reported , e.g. \cite{Basting2017}, \cite{Hessenthaler2017}. To the best of the authors knowledge, only a few monolithic schemes have been throughly analyzed, e.g. \cite{Lozovskiy2018, smaldone2014, le-tallec-mouro-01, Burtschell2017} while no analysis has been reported for Chorin-Temam (CT) methods, being an alternative option when requirements such a low time computations are needed, specially for future industrial applications.
+
+The goal of this talk is to present the finding of well-posedness and unconditional energy balance of the iNSE-ALE for several reported CT discretization schemes within a single formulation, published in \cite{arostica2021monolithic}. It will be supplemented with an usage case for fluid-solid interaction problems.
+
+
+\bibliography{biblio_merged.bib}
+\bibliographystyle{unsrt}
+
+\end{document}
+
+
+
+
diff --git a/conferences/cbme2022/biblio_merged.bib b/conferences/cbme2022/biblio_merged.bib
new file mode 100644
index 0000000..8d4e3e0
--- /dev/null
+++ b/conferences/cbme2022/biblio_merged.bib
@@ -0,0 +1,31051 @@
+@STRING{camwa = "Comput. Math. Appl." }
+@STRING{camwa = "Comput. Math. Appl." }
+@STRING{cma = "Comp. Meth. Appl. Mech. Engrg." }
+@STRING{cma = "Comp. Meth. Appl. Mech. Engrg." }
+@STRING{ijnme = "Int. J. Numer. Meth. Engrg." }
+@STRING{ijnme = "Int. J. Numer. Meth. Engrg." }
+@STRING{ijnmf = "Int. J. Numer. Meth. Fluids" }
+@STRING{ijnmf = "Int. J. Numer. Meth. Fluids" }
+@STRING{jcma = "J. Comp. Appl. Math." }
+@STRING{jcma = "J. Comp. Appl. Math." }
+@STRING{jcp = "J. Comp. Phys." }
+@STRING{jcp = "J. Comp. Phys." }
+@STRING{jsp = "J. Stat. Phys." }
+@STRING{jsp = "J. Stat. Phys." }
+@STRING{m2an = " Math. Model. Num. Anal. (M2AN)" }
+@STRING{m2an = " Math. Model. Num. Anal. (M2AN)" }
+@STRING{mc = " Math. Comp." }
+@STRING{mc = " Math. Comp." }
+@STRING{pre = "Phys. Rew. E" }
+@STRING{pre = "Phys. Rew. E" }
+@STRING{prl = "Phys. Rew. Lett." }
+@STRING{prl = "Phys. Rew. Lett." }
+@STRING{sisc = "SIAM J. Sci. Comp." }
+@STRING{sisc = "SIAM J. Sci. Comp." }
+
+@article{Burtschell2017,
+ year = {2017},
+ month = apr,
+ publisher = {Elsevier {BV}},
+ volume = {182},
+ pages = {313--324},
+ author = {Bruno Burtschell and Dominique Chapelle and Philippe Moireau},
+ title = {Effective and energy-preserving time discretization for a general nonlinear poromechanical formulation},
+ journal = {Computers {\&} Structures}
+}
+
+
+@phdthesis{smaldone2014,
+ TITLE = {{Numerical analysis and simulations of coupled problems for the cariovascular system}},
+ AUTHOR = {Smaldone, Saverio},
+ SCHOOL = {{L'universit{\'e} Pierre et Marie Curie - Paris VI }},
+ YEAR = {2014},
+ MONTH = Oct,
+ TYPE = {Theses},
+ HAL_ID = {tel-01287506},
+ HAL_VERSION = {v1},
+}
+
+@article{Lozovskiy2018,
+ year = {2018},
+ month = may,
+ publisher = {Elsevier {BV}},
+ volume = {333},
+ pages = {55--73},
+ author = {Alexander Lozovskiy and Maxim A. Olshanskii and Yuri V. Vassilevski},
+ title = {A quasi-Lagrangian finite element method for the Navier{\textendash}Stokes equations in a time-dependent domain},
+ journal = {Computer Methods in Applied Mechanics and Engineering}
+}
+
+@article{Hessenthaler2017,
+ year = {2017},
+ month = feb,
+ publisher = {Wiley},
+ volume = {33},
+ number = {8},
+ pages = {e2845},
+ author = {Andreas Hessenthaler and Oliver R\"{o}hrle and David Nordsletten},
+ title = {Validation of a non-conforming monolithic fluid-structure interaction method using phase-contrast {MRI}},
+ journal = {International Journal for Numerical Methods in Biomedical Engineering}
+}
+
+@article{Basting2017,
+ year = {2017},
+ month = feb,
+ publisher = {Elsevier {BV}},
+ volume = {331},
+ pages = {312--336},
+ author = {Steffen Basting and Annalisa Quaini and Sun{\v{c}}ica {\v{C}}ani{\'{c}} and Roland Glowinski},
+ title = {Extended {ALE} Method for fluid{\textendash}structure interaction problems with large structural displacements},
+ journal = {Journal of Computational Physics}
+}
+
+
+@article{manganotti2021coupling,
+ title={Coupling reduced-order blood flow and cardiac models through energy-consistent strategies: modeling and discretization},
+ author={Manganotti, Jessica and Caforio, Federica and Kimmig, Fran{\c{c}}ois and Moireau, Philippe and Imperiale, S{\'e}bastien},
+ journal={Advanced Modeling and Simulation in Engineering Sciences},
+ volume={8},
+ number={1},
+ pages={1--37},
+ year={2021},
+ publisher={SpringerOpen}
+}
+
+@article{piersanti20223d,
+ title={3D--0D closed-loop model for the simulation of cardiac biventricular electromechanics},
+ author={Piersanti, Roberto and Regazzoni, Francesco and Salvador, Matteo and Corno, Antonio F and Vergara, Christian and Quarteroni, Alfio and others},
+ journal={Computer Methods in Applied Mechanics and Engineering},
+ volume={391},
+ pages={114607},
+ year={2022},
+ publisher={Elsevier}
+}
+
+@article{holzapfel2009constitutive,
+ title={Constitutive modelling of passive myocardium: a structurally based framework for material characterization},
+ author={Holzapfel, Gerhard A and Ogden, Ray W},
+ journal={Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences},
+ volume={367},
+ number={1902},
+ pages={3445--3475},
+ year={2009},
+ publisher={The Royal Society Publishing}
+}
+
+@article{pfaller2020pod,
+ title={Using parametric model order reduction for inverse analysis of large nonlinear cardiac simulations},
+ author={Pfaller, Martin R and Cruz Varona, Maria and Lang, Johannes and Bertoglio, Crist{\'o}bal and Wall, Wolfgang A},
+ journal={International journal for numerical methods in biomedical engineering},
+ volume={36},
+ number={4},
+ pages={e3320},
+ year={2020},
+ publisher={Wiley Online Library}
+}
+
+@article{marchesseau2013regionalvols,
+ title={Personalization of a cardiac electromechanical model using reduced order unscented Kalman filtering from regional volumes},
+ author={Marchesseau, St{\'e}phanie and Delingette, Herv{\'e} and Sermesant, Maxime and Cabrera-Lozoya, R and Tobon-Gomez, Catalina and Moireau, Philippe and i Ventura, RM Figueras and Lekadir, Karim and Hernandez, Alfredo and Garreau, Mireille and others},
+ journal={Medical image analysis},
+ volume={17},
+ number={7},
+ pages={816--829},
+ year={2013},
+ publisher={Elsevier}
+}
+
+@article{chabiniok2012estimation,
+ title={Estimation of tissue contractility from cardiac cine-MRI using a biomechanical heart model},
+ author={Chabiniok, Radomir and Moireau, Philippe and Lesault, P-F and Rahmouni, Alain and Deux, J-F and Chapelle, Dominique},
+ journal={Biomechanics and modeling in mechanobiology},
+ volume={11},
+ number={5},
+ pages={609--630},
+ year={2012},
+ publisher={Springer}
+}
+
+@article{marchesseau2013fast,
+ title={Fast parameter calibration of a cardiac electromechanical model from medical images based on the unscented transform},
+ author={Marchesseau, St{\'e}phanie and Delingette, Herv{\'e} and Sermesant, Maxime and Ayache, Nicholas},
+ journal={Biomechanics and modeling in mechanobiology},
+ volume={12},
+ number={4},
+ pages={815--831},
+ year={2013},
+ publisher={Springer}
+}
+
+@article{imperiale2021tagged,
+ title={Sequential data assimilation for mechanical systems with complex image data: application to tagged-MRI in cardiac mechanics},
+ author={Imperiale, Alexandre and Chapelle, Dominique and Moireau, Philippe},
+ journal={Advanced Modeling and Simulation in Engineering Sciences},
+ volume={8},
+ number={1},
+ pages={1--47},
+ year={2021},
+ publisher={SpringerOpen}
+}
+
+@book{vlachopoulos2011mcdonald,
+ title={McDonald's blood flow in arteries: theoretical, experimental and clinical principles},
+ author={Vlachopoulos, Charalambos and O'Rourke, Michael and Nichols, Wilmer W},
+ year={2011},
+ publisher={CRC press}
+}
+
+@article{arostica2021monolithic,
+ title={On monolithic and Chorin--Temam schemes for incompressible flows in moving domains},
+ author={Ar{\'o}stica, Reidmen and Bertoglio, Crist{\'o}bal},
+ journal={Applied Mathematics Letters},
+ volume={112},
+ pages={106830},
+ year={2021},
+ publisher={Elsevier}
+}
+
+@article{de2014catheter,
+ title={Catheter-induced errors in pressure measurements in vessels: an in-vitro and numerical study},
+ author={de Vecchi, Adelaide and Clough, Rachel E and Gaddum, Nicholas R and Rutten, Marcel CM and Lamata, Pablo and Schaeffter, Tobias and Nordsletten, David A and Smith, Nicolas P},
+ journal={IEEE Transactions on Biomedical Engineering},
+ volume={61},
+ number={6},
+ pages={1844--1850},
+ year={2014},
+ publisher={IEEE}
+}
+
+@article{NAKANISHI20123,
+title = {Myocardial bridging on coronary CTA: An innocent bystander or a culprit in myocardial infarction?},
+journal = {Journal of Cardiovascular Computed Tomography},
+volume = {6},
+number = {1},
+pages = {3-13},
+year = {2012},
+issn = {1934-5925},
+doi = {https://doi.org/10.1016/j.jcct.2011.10.015},
+url = {https://www.sciencedirect.com/science/article/pii/S193459251100414X},
+author = {Rine Nakanishi and Ronak Rajani and Yukio Ishikawa and Toshiharu Ishii and Daniel S. Berman},
+keywords = {Myocardial bridge, Coronary artery, Cardiac computed tomography, Myocardial infarction},
+}
+
+@article{aguayo2021oseen,
+ title={A distributed resistance inverse method for flow obstacle identification from internal velocity measurements},
+ author={Aguayo, Jorge and Bertoglio, Crist{\'o}bal and Osses, Axel},
+ journal={Inverse Problems},
+ volume={37},
+ number={2},
+ pages={025010},
+ year={2021},
+ publisher={IOP Publishing}
+}
+
+@article{arthurs2020flexible,
+ title={A flexible framework for sequential estimation of model parameters in computational hemodynamics},
+ author={Arthurs, Christopher J and Xiao, Nan and Moireau, Philippe and Schaeffter, Tobias and Figueroa, C Alberto},
+ journal={Advanced modeling and simulation in engineering sciences},
+ volume={7},
+ number={1},
+ pages={1--37},
+ year={2020},
+ publisher={SpringerOpen}
+}
+
+@article{fevola2021optimal,
+ title={An optimal control approach to determine resistance-type boundary conditions from in-vivo data for cardiovascular simulations},
+ author={Fevola, Elisa and Ballarin, Francesco and Jim{\'e}nez-Juan, Laura and Fremes, Stephen and Grivet-Talocia, Stefano and Rozza, Gianluigi and Triverio, Piero},
+ journal={arXiv preprint arXiv:2104.13284},
+ year={2021}
+}
+
+@article{pozzi2021surrogate,
+ title={A surrogate model for plaque modeling in carotids based on Robin conditions calibrated by cine MRI data},
+ author={Pozzi, Silvia and Domanin, Maurizio and Forzenigo, Laura and Votta, Emiliano and Zunino, E and Redaelli, Alberto and Vergara, Christian},
+ journal={Int. J. Numer. Methods Biomed. Eng.},
+ pages={e3447},
+ year={2021}
+}
+
+@article{moireau2012external,
+ title={External tissue support and fluid--structure simulation in blood flows},
+ author={Moireau, Philippe and Xiao, Nan and Astorino, Matteo and Figueroa, C Alberto and Chapelle, Dominique and Taylor, CA and Gerbeau, J-F},
+ journal={Biomechanics and modeling in mechanobiology},
+ volume={11},
+ number={1},
+ pages={1--18},
+ year={2012},
+ publisher={Springer}
+}
+
+@book{smith2010introduction,
+ title={Introduction to medical imaging: physics, engineering and clinical applications},
+ author={Smith, Nadine Barrie and Webb, Andrew},
+ year={2010},
+ publisher={Cambridge university press}
+}
+
+@article{walheim2019multipoint,
+ title={Multipoint 5D flow cardiovascular magnetic resonance-accelerated cardiac-and respiratory-motion resolved mapping of mean and turbulent velocities},
+ author={Walheim, Jonas and Dillinger, Hannes and Kozerke, Sebastian},
+ journal={Journal of Cardiovascular Magnetic Resonance},
+ volume={21},
+ number={1},
+ pages={1--13},
+ year={2019},
+ publisher={BioMed Central}
+}
+
+@book{mcrobbie2017mri,
+ title={MRI from Picture to Proton},
+ author={McRobbie, Donald W and Moore, Elizabeth A and Graves, Martin J and Prince, Martin R},
+ year={2017},
+ publisher={Cambridge university press}
+}
+
+@article{fleischmann2016cta,
+ title={Computed tomography angiography: a review and technical update},
+ author={Fleischmann, Dominik and Chin, Anne S and Molvin, Lior and Wang, Jia and Hallett, Richard},
+ journal={Radiologic Clinics},
+ volume={54},
+ number={1},
+ pages={1--12},
+ year={2016},
+ publisher={Elsevier}
+}
+
+
+@article{kumar2021past,
+ title={Past, present and future of blood pressure measuring instruments and their calibration},
+ author={Kumar, Rahul and Dubey, PK and Zafer, Afaqul and Kumar, Ashok and Yadav, Sanjay},
+ journal={Measurement},
+ volume={172},
+ pages={108845},
+ year={2021},
+ publisher={Elsevier}
+}
+
+@article{babbs2012oscillometric,
+ title={Oscillometric measurement of systolic and diastolic blood pressures validated in a physiologic mathematical model},
+ author={Babbs, Charles F},
+ journal={Biomedical engineering online},
+ volume={11},
+ number={1},
+ pages={1--22},
+ year={2012},
+ publisher={BioMed Central}
+}
+
+@article{quarteroni2016geometric,
+ title={Geometric multiscale modeling of the cardiovascular system, between theory and practice},
+ author={Quarteroni, Alfio and Veneziani, Alessandro and Vergara, Christian},
+ journal={Computer Methods in Applied Mechanics and Engineering},
+ volume={302},
+ pages={193--252},
+ year={2016},
+ publisher={Elsevier}
+}
+
+@article{perinajova2021geometrically,
+ title={Geometrically induced wall shear stress variability in CFD-MRI coupled simulations of blood flow in the thoracic aortas},
+ author={Perinajov{\'a}, Romana and Juffermans, Joe F and Westenberg, Jos JM and van der Palen, Roel LF and van den Boogaard, Pieter J and Lamb, Hildo J and Kenjere{\v{s}}, Sa{\v{s}}a},
+ journal={Computers in Biology and Medicine},
+ pages={104385},
+ year={2021},
+ publisher={Elsevier}
+}
+
+@article{itu2017,
+ title={Personalized blood flow computations: A hierarchical parameter estimation framework for tuning boundary conditions},
+ author={Itu, Lucian and Sharma, Puneet and Suciu, Constantin and Moldoveanu, Florin and Comaniciu, Dorin},
+ journal={International journal for numerical methods in biomedical engineering},
+ volume={33},
+ number={3},
+ pages={e02803},
+ year={2017},
+ publisher={Wiley Online Library}
+}
+
+@article{gerbeau2003quasi,
+ title={A quasi-Newton algorithm based on a reduced model for fluid-structure interaction problems in blood flows},
+ author={Gerbeau, Jean-Fr{\'e}d{\'e}ric and Vidrascu, Marina},
+ journal={ESAIM: Mathematical Modelling and Numerical Analysis},
+ volume={37},
+ number={4},
+ pages={631--647},
+ year={2003},
+ publisher={EDP Sciences}
+}
+
+@article{spilker2010,
+ title={Tuning multidomain hemodynamic simulations to match physiological measurements},
+ author={Spilker, Ryan L and Taylor, Charles A},
+ journal={Annals of biomedical engineering},
+ volume={38},
+ number={8},
+ pages={2635--2648},
+ year={2010},
+ publisher={Springer}
+}
+
+@article{gaidzik2019,
+ title={Transient flow prediction in an idealized aneurysm geometry using data assimilation},
+ author={Gaidzik, Franziska and Stucht, Daniel and Roloff, Christoph and Speck, Oliver and Th{\'e}venin, Dominique and Janiga, G{\'a}bor},
+ journal={Computers in biology and medicine},
+ volume={115},
+ pages={103507},
+ year={2019},
+ publisher={Elsevier}
+}
+
+@article{gaidzik2020willis,
+ title={Hemodynamic Data Assimilation in a Subject-specific Circle of Willis Geometry},
+ author={Gaidzik, Franziska and Pathiraja, Sahani and Saalfeld, Sylvia and Stucht, Daniel and Speck, Oliver and Th{\'e}venin, Dominique and Janiga, G{\'a}bor},
+ journal={Clinical Neuroradiology},
+ pages={1--9},
+ year={2020},
+ publisher={Springer}
+}
+
+@inproceedings{koltukluoglu_harmonic_2019,
+ title={Fourier Spectral Dynamic Data Assimilation: Interlacing CFD with 4D Flow MRI},
+ author={Koltukluo{\u{g}}lu, Taha Sabri},
+ booktitle={International Conference on Medical Image Computing and Computer-Assisted Intervention},
+ pages={741--749},
+ year={2019},
+ organization={Springer}
+}
+
+@article{toeger2020mrm,
+ title={Blood flow imaging by optimal matching of computational fluid dynamics to 4D-flow data},
+ author={T{\"o}ger, Johannes and Zahr, Matthew J and Aristokleous, Nicolas and Markenroth Bloch, Karin and Carlsson, Marcus and Persson, Per-Olof},
+ journal={Magnetic Resonance in Medicine},
+ year={2020},
+ publisher={Wiley Online Library}
+}
+
+@article{rispoli2015,
+ title={Computational fluid dynamics simulations of blood flow regularized by 3D phase contrast MRI},
+ author={Rispoli, Vinicius C and Nielsen, Jon F and Nayak, Krishna S and Carvalho, Joao LA},
+ journal={Biomedical engineering online},
+ volume={14},
+ number={1},
+ pages={110},
+ year={2015},
+ publisher={Springer}
+}
+
+@article{delosreyes2009regularizedNSE,
+ title={Regularized state-constrained boundary optimal control of the Navier--Stokes equations},
+ author={de los Reyes, Juan Carlos and Yousept, Irwin},
+ journal={Journal of mathematical analysis and applications},
+ volume={356},
+ number={1},
+ pages={257--279},
+ year={2009},
+ publisher={Elsevier}
+}
+
+@article{guerra_velocity_2014,
+ title={Optimal control in blood flow simulations},
+ author={Guerra, Telma and Tiago, Jorge and Sequeira, Ad{\'e}lia},
+ journal={International Journal of Non-Linear Mechanics},
+ volume={64},
+ pages={57--69},
+ year={2014},
+ publisher={Elsevier}
+}
+
+@article{backflowBenchmark2018,
+ title={Benchmark problems for numerical treatment of backflow at open boundaries},
+ author={Bertoglio, Crist{\'o}bal and Caiazzo, Alfonso and Bazilevs, Yuri and Braack, Malte and Esmaily, Mahdi and Gravemeier, Volker and L. Marsden, Alison and Pironneau, Olivier and E. Vignon-Clementel, Irene and A. Wall, Wolfgang},
+ journal={International journal for numerical methods in biomedical engineering},
+ volume={34},
+ number={2},
+ pages={e2918},
+ year={2018},
+ publisher={Wiley Online Library}
+}
+
+@article{tiago_2014,
+ title={Patient-specific blood flow simulations: setting Dirichlet boundary conditions for minimal error with respect to measured data},
+ author={Tiago, Jorge and Gambaruto, Alberto and Sequeira, Adelia},
+ journal={Mathematical Modelling of Natural Phenomena},
+ volume={9},
+ number={6},
+ pages={98--116},
+ year={2014},
+ publisher={EDP Sciences}
+}
+
+@article{delia_variational_2010,
+ title={Methods for assimilating blood velocity measures in hemodynamics simulations: Preliminary results},
+ author={D'Elia, Marta and Veneziani, Alessandro},
+ journal={Procedia Computer Science},
+ volume={1},
+ number={1},
+ pages={1231--1239},
+ year={2010},
+ publisher={Elsevier}
+}
+
+@article{bruning2018uncertainty,
+ title={Uncertainty quantification for non-invasive assessment of pressure drop across a coarctation of the aorta using CFD},
+ author={Br{\"u}ning, Jan and Hellmeier, Florian and Yevtushenko, Pavlo and K{\"u}hne, Titus and Goubergrits, Leonid},
+ journal={Cardiovascular engineering and technology},
+ volume={9},
+ number={4},
+ pages={582--596},
+ year={2018},
+ publisher={Springer}
+}
+
+
+@Unpublished{ 2004_fernandez_lecture_harvard_estimationtheory,
+ Author = {Fern\'andez, M. M.},
+ Institution = {Laboratory of Mathematics in Imaging, Harvard University},
+ HowPublished = {University Lecture},
+ Year = {2004},
+ Title = {Fundamentals on Estimation Theory},
+ URL = {http://lmi.bwh.harvard.edu/papers/pdfs/2004/martin-fernandezCOURSE04b.pdf}
+}
+
+@InCollection{ 2011_krueger-etal_fimh11_rbmatria,
+ Year = {2011},
+ ISBN = {978-3-642-21027-3},
+ BookTitle = {Functional Imaging and Modeling of the Heart},
+ DOI = {10.1007/978-3-642-21028-0_28},
+ Title = {Modeling Atrial Fiber Orientation in Patient-Specific
+ Geometries: A Semi-automatic Rule-Based Approach},
+ URL = {http://dx.doi.org/10.1007/978-3-642-21028-0_28},
+ Publisher = {Springer Berlin Heidelberg},
+ Keywords = {patient-specific modeling; atrial modeling; fiber
+ orientation; atrial heterogeneity; atrial anisotropy},
+ Author = {Kr\"uger, M. and Schmidt, V. and Tob\'on, C. and Weber, F.
+ and Lorenz, C. and Keller, D. and Barschdorf, H. and
+ Burdumy, M. and Neher, P. and Plank, G. and Rhode, K. and
+ Seemann, G. and Sanchez-Quintana, D. and Saiz, J. and
+ Razavi, R. and D\"ossel, O.},
+ Pages = {223-232}
+}
+
+@Article{ 2012_young_torsion_short,
+ Title = "Ventricular Torsion: An Aid to Ejection?",
+ Journal = "JACC: Cardiovascular Imaging",
+ Volume = "5",
+ Number = "3",
+ Pages = "282 - 284",
+ Year = "2012",
+ Note = "",
+ ISSN = "1936-878X",
+ DOI = "http://dx.doi.org/10.1016/j.jcmg.2011.11.016",
+ URL = "http://www.sciencedirect.com/science/article/pii/S1936878X11009363",
+ Author = "Young, Alistair A.",
+ Keywords = "transverse shear "
+}
+
+
+@phdthesis{failer2017optimal,
+ title={Optimal control of time-dependent nonlinear fluid-structure interaction},
+ author={Failer, Lukas},
+ year={2017},
+ school={Technische Universit{\"a}t M{\"u}nchen}
+}
+
+@Article{ abraham2002nejm,
+ Title = {Cardiac resynchronization in chronic heart failure},
+ Author = {Abraham, W.T. and Fisher, W.G. and Smith, A.L. and
+ Delurgio, D.B. and Leon, A.R. and Loh, E. and Kocovic, D.Z.
+ and Packer, M. and Clavell, A.L. and Hayes, D.L. and
+ {others}},
+ Journal = {New England Journal of Medicine},
+ Year = {2002},
+ Number = {24},
+ Pages = {1845--1853},
+ Volume = {346},
+ File = {Abraham_2002.pdf:/home/hoermann/.zotero/zotero/krpbc0h6.default/zotero/storage/V9EPGE8S/Abraham_2002.pdf:application/pdf},
+ Keywords = {CRT},
+ URL = {http://www.nejm.org/doi/full/10.1056/nejmoa013168},
+ URLDate = {2014-11-27}
+}
+
+@Article{ abujudeh2010ajr,
+ Title = {Acute Adverse Reactions to Gadopentetate Dimeglumine and
+ Gadobenate Dimeglumine: Experience With 32,659 Injections},
+ Author = {Abujudeh, Hani H. and Kosaraju, Vijaya K. and Kaewlai,
+ Rathachai},
+ Journal = {American Journal of Roentgenology},
+ Year = {2010},
+ Month = {Feb},
+ Number = {2},
+ Pages = {430--434},
+ Volume = {194},
+ DOI = {10.2214/ajr.09.3099},
+ File = {:Abujudeh2010AJR.pdf:PDF},
+ ISSN = {1546-3141},
+ Keywords = {acute adverse reaction, gadobenate dimeglumine,
+ gadolinium-based contrast agents, gadopentetate
+ dimeglumine},
+ Publisher = {American Roentgen Ray Society},
+ URL = {http://dx.doi.org/10.2214/AJR.09.3099}
+}
+
+@Unpublished{ achdou-bernardi-coquel-01,
+ Author = {Achdou, Y. and Bernardi, C. and Coquel, F.},
+ code = {por16},
+ Title = {A priori and a posteriori analysis of finite volume
+ discretizations of {D}arcy's equations}
+}
+
+###Unpublished{ achdou-bernardi-coquel-01,
+ Author = {Achdou, Y. and Bernardi, C. and Coquel, F.},
+ code = {por16},
+ Note = {Preprint Univ. Paris 6, 2001},
+ Title = {A priori and a posteriori analysis of finite volume
+ discretizations of {D}arcy's equations}
+}
+
+@Article{ achdou-pironneau-valentin-98,
+ Author = {Achdou, Y. and Pironneau, O. and Valentin, F.},
+ Journal = {J. Comp. Phys.},
+ Pages = {187-218},
+ Title = {Effective boundary conditions for laminar flows over
+ periodic rough boundaries},
+ Volume = {147},
+ Year = {1998}
+}
+
+###Article{ achdou-pironneau-valentin-98,
+ Author = {Achdou, Y. and Pironneau, O. and Valentin, F.},
+ Journal = {J. Comp. Phys.},
+ Pages = {187-218},
+ Title = {Effective boundary conditions for laminar flows over
+ periodic rough boundaries},
+ Volume = {147},
+ Year = {1998}
+}
+
+@Article{ adib_new_2017,
+ Title = {A New Concept of Data Assimilation Method between
+ {{PC}}-{{MRI}} Measurement and {{CFD}} Simulation of Blood
+ Flow Analysis on Patient-Specific Cerebral Aneurysm},
+ Year = {2017},
+ Author = {Adib, Mohd and Bin, Mohd Azrul Hisham}
+}
+
+@Article{ aha-circulation-08,
+ Author = "Warnes, C.A. and Williams, R.G. and Bashore, T.M. and
+ Child, J.S. and Connolly, H.M. and Dearani, J.A. and del
+ Nido, P. and Fasules, J.W. and Graham, T.P. and Hijazi,
+ Z.M. and Hunt, S.A. and King, M.E. and Landzberg, M.J. and
+ Miner, P.D. and Radford, M.J. and Walsh, E.P. and Webb,
+ G.D.",
+ Title = "{ACC/AHA 2008 Guidelines for the Management of Adults with
+ Congenital Heart Disease: a report of the American College
+ of Cardiology/American Heart Association Task Force on
+ Practice Guidelines (writing committee to develop
+ guidelines on the management of adults with congenital
+ heart disease)}",
+ Journal = "Circulation",
+ Volume = 118,
+ Pages = "714-833",
+ Number = "1",
+ Year = "2008"
+}
+
+###Article{ aha-circulation-08,
+ Author = "Warnes, C.A. and Williams, R.G. and Bashore, T.M. and
+ Child, J.S. and Connolly, H.M. and Dearani, J.A. and del
+ Nido, P. and Fasules, J.W. and Graham, T.P. and Hijazi,
+ Z.M. and Hunt, S.A. and King, M.E. and Landzberg, M.J. and
+ Miner, P.D. and Radford, M.J. and Walsh, E.P. and Webb,
+ G.D.",
+ Title = "{ACC/AHA 2008 Guidelines for the Management of Adults with
+ Congenital Heart Disease: a report of the American College
+ of Cardiology/American Heart Association Task Force on
+ Practice Guidelines (writing committee to develop
+ guidelines on the management of adults with congenital
+ heart disease)}",
+ Journal = "Circulation",
+ Volume = 118,
+ Pages = "714-833",
+ Number = "1",
+ Year = "2008"
+}
+
+###Article{ aha-circulation-08,
+ Author = "Warnes, C.A. and Williams, R.G. and Bashore, T.M. and
+ Child, J.S. and Connolly, H.M. and Dearani, J.A. and del
+ Nido, P. and Fasules, J.W. and Graham, T.P. and Hijazi,
+ Z.M. and Hunt, S.A. and King, M.E. and Landzberg, M.J. and
+ Miner, P.D. and Radford, M.J. and Walsh, E.P. and Webb,
+ G.D.",
+ Title = "{ACC/AHA 2008 Guidelines for the Management of Adults with
+ Congenital Heart Disease: a report of the American College
+ of Cardiology/American Heart Association Task Force on
+ Practice Guidelines (writing committee to develop
+ guidelines on the management of adults with congenital
+ heart disease)}",
+ Journal = "Circulation",
+ Volume = 118,
+ Pages = "714-833",
+ Number = "1",
+ Year = "2008"
+}
+
+@Book{ ainsworth2011posteriori,
+ Title = {A posteriori error estimation in finite element analysis},
+ Author = {Ainsworth, Mark and Oden, J Tinsley},
+ Volume = {37},
+ Year = {2011},
+ Publisher = {John Wiley \& Sons}
+}
+
+@Article{ akaike1974ieee,
+ Title = {A new look at the statistical model identification},
+ Author = {Akaike, Hirotugu},
+ Journal = "IEEE Trans. Autom. Control",
+ Volume = {19},
+ Number = {6},
+ Pages = {716--723},
+ Year = {1974},
+ Publisher = {Ieee}
+}
+
+@Article{ akrivis2010posteriori,
+ Title = {A posteriori error estimates for the two-step backward
+ differentiation formula method for parabolic equations},
+ Author = {Akrivis, Georgios and Chatzipantelidis, Panagiotis},
+ Journal = {SIAM Journal on Numerical Analysis},
+ Volume = {48},
+ Number = {1},
+ Pages = {109--132},
+ Year = {2010},
+ Publisher = {SIAM}
+}
+
+@Article{ aletras1999jmr,
+ Title = {DENSE: displacement encoding with stimulated echoes in
+ cardiac functional MRI.},
+ Author = {Aletras, A. H. and Ding, S. and Balaban, R. S. and Wen,
+ H.},
+ Journal = {J Magn Reson},
+ Year = {1999},
+ Month = {Mar},
+ Number = {1},
+ Pages = {247--252},
+ Volume = {137},
+ Abstract = {Displacement encoding with stimulated echoes (DENSE) was
+ developed for high-resolution myocardial displacement
+ mapping. Pixel phase is modulated by myocardial
+ displacement and data spatial resolution is limited only by
+ pixel size. 2D displacement vector maps were generated for
+ the systolic action in canines with 0.94 x 1.9 mm nominal
+ in-plane resolution and 2.3 mm/pi displacement encoding. A
+ radial strain of 0.208 was measured across the free left
+ ventricular wall over 105 ms during systole. DENSE
+ displacement maps require small first-order gradient
+ moments for encoding. DENSE magnitude images exhibit
+ black-blood contrast which allows for better myocardial
+ definition and reduced motion-related artifacts.},
+ DOI = {10.1006/jmre.1998.1676},
+ Institution = {Laboratory of Cardiac Energetics, NHLBI, Bethesda,
+ Maryland, 20892-1061, USA.},
+ Keywords = {Animals; Artifacts; Computer Simulation; Dogs; Heart,
+ anatomy /&/ histology/physiology; Humans; Image Processing,
+ Computer-Assisted; Magnetic Resonance Imaging, methods;
+ Myocardial Contraction; Sensitivity and Specificity},
+ Language = {eng},
+ medline-pst = {ppublish},
+ owner = {stoeckc},
+ pii = {S1090-7807(98)91676-7},
+ pmid = {10053155},
+ timestamp = {2015.07.24},
+ URL = {http://dx.doi.org/10.1006/jmre.1998.1676}
+}
+
+@Article{ alexander2001,
+ Title = {Spatial transformations of diffusion tensor magnetic
+ resonance images},
+ Author = {Alexander, Daniel C and Pierpaoli, Carlo and Basser, Peter
+ J and Gee, James C},
+ Journal = {IEEE Transactions on Medical Imaging},
+ Volume = {20},
+ Number = {11},
+ Pages = {1131--1139},
+ Year = {2001},
+ Publisher = {IEEE}
+}
+
+@InCollection{ allain-85,
+ Author = {Allain, G.},
+ BookTitle = {Res. notes in Math.},
+ Journal = {Appl. Math. Optim.},
+ Pages = {355-364},
+ Publisher = {Pitman},
+ Title = {Small-time existence for the {Navier-Stokes} equations
+ with a free surface and surface tension},
+ Volume = {121},
+ Year = {1985}
+}
+
+###InCollection{ allain-85,
+ Author = {Allain, G.},
+ BookTitle = {Res. notes in Math.},
+ Journal = {Appl. Math. Optim.},
+ Pages = {355-364},
+ Publisher = {Pitman},
+ Title = {Small-time existence for the {Navier-Stokes} equations
+ with a free surface and surface tension},
+ Volume = {121},
+ Year = {1985}
+}
+
+@Article{ allain-87,
+ Author = {Allain, G.},
+ Journal = {Appl. Math. Optim.},
+ Pages = {37-50},
+ Title = {Small-time existence for the {Navier-Stokes} equations
+ with a free surface},
+ Volume = {16},
+ Year = {1987}
+}
+
+###Article{ allain-87,
+ Author = {Allain, G.},
+ Journal = {Appl. Math. Optim.},
+ Pages = {37-50},
+ Title = {Small-time existence for the {Navier-Stokes} equations
+ with a free surface},
+ Volume = {16},
+ Year = {1987}
+}
+
+@Article{ allaire-89,
+ Author = {Allaire, Gr{\'e}goire},
+ fjournal = {Asymptotic Analysis},
+ Journal = {Asymptotic Anal.},
+ Number = {3},
+ Pages = {203--222},
+ Title = {Homogenization of the {S}tokes flow in a connected porous
+ medium},
+ Volume = {2},
+ Year = {1989}
+}
+
+###Article{ allaire-89,
+ Author = {Allaire, Gr{\'e}goire},
+ fjournal = {Asymptotic Analysis},
+ Journal = {Asymptotic Anal.},
+ Number = {3},
+ Pages = {203--222},
+ Title = {Homogenization of the {S}tokes flow in a connected porous
+ medium},
+ Volume = {2},
+ Year = {1989}
+}
+
+@Article{ allaire-90,
+ Author = {Allaire, G.},
+ fjournal = {Archive for Rational Mechanics and Analysis},
+ Journal = {Arch. Rational Mech. Anal.},
+ Number = {3},
+ Pages = {209--259},
+ Title = {Homogenization of the {N}avier-{S}tokes equations in open
+ sets perforated with tiny holes. {I}. {A}bstract framework,
+ a volume distribution of holes},
+ Volume = {113},
+ Year = {1990}
+}
+
+###Article{ allaire-90,
+ Author = {Allaire, G.},
+ fjournal = {Archive for Rational Mechanics and Analysis},
+ Journal = {Arch. Rational Mech. Anal.},
+ Number = {3},
+ Pages = {209--259},
+ Title = {Homogenization of the {N}avier-{S}tokes equations in open
+ sets perforated with tiny holes. {I}. {A}bstract framework,
+ a volume distribution of holes},
+ Volume = {113},
+ Year = {1990}
+}
+
+@Article{ allaire-90b,
+ Author = {Allaire, G.},
+ fjournal = {Archive for Rational Mechanics and Analysis},
+ Journal = {Arch. Rational Mech. Anal.},
+ Number = {3},
+ Pages = {261--298},
+ Title = {Homogenization of the {N}avier-{S}tokes equations in open
+ sets perforated with tiny holes. {II}. {N}oncritical sizes
+ of the holes for a volume distribution and a surface
+ distribution of holes},
+ Volume = {113},
+ Year = {1990}
+}
+
+###Article{ allaire-90b,
+ Author = {Allaire, G.},
+ fjournal = {Archive for Rational Mechanics and Analysis},
+ Journal = {Arch. Rational Mech. Anal.},
+ Number = {3},
+ Pages = {261--298},
+ Title = {Homogenization of the {N}avier-{S}tokes equations in open
+ sets perforated with tiny holes. {II}. {N}oncritical sizes
+ of the holes for a volume distribution and a surface
+ distribution of holes},
+ Volume = {113},
+ Year = {1990}
+}
+
+@Article{ allaire-91,
+ Author = {Allaire, G.},
+ fjournal = {Annali della Scuola Normale Superiore di Pisa. Classe di
+ Scienze. Serie IV},
+ Journal = {Ann. Scuola Norm. Sup. Pisa Cl. Sci. (4)},
+ Number = {4},
+ Pages = {475--499},
+ Title = {Continuity of the {D}arcy's law in the low-volume fraction
+ limit},
+ Volume = {18},
+ Year = {1991}
+}
+
+###Article{ allaire-91,
+ Author = {Allaire, G.},
+ fjournal = {Annali della Scuola Normale Superiore di Pisa. Classe di
+ Scienze. Serie IV},
+ Journal = {Ann. Scuola Norm. Sup. Pisa Cl. Sci. (4)},
+ Number = {4},
+ Pages = {475--499},
+ Title = {Continuity of the {D}arcy's law in the low-volume fraction
+ limit},
+ Volume = {18},
+ Year = {1991}
+}
+
+@Article{ allaire-91a,
+ Author = {Allaire, G.},
+ fjournal = {Communications on Pure and Applied Mathematics},
+ Journal = {Comm. Pure Appl. Math.},
+ Number = {6},
+ Pages = {605--641},
+ Title = {Homogenization of the {N}avier-{S}tokes equations with a
+ slip boundary condition},
+ Volume = {44},
+ Year = {1991}
+}
+
+###Article{ allaire-91a,
+ Author = {Allaire, G.},
+ fjournal = {Communications on Pure and Applied Mathematics},
+ Journal = {Comm. Pure Appl. Math.},
+ Number = {6},
+ Pages = {605--641},
+ Title = {Homogenization of the {N}avier-{S}tokes equations with a
+ slip boundary condition},
+ Volume = {44},
+ Year = {1991}
+}
+
+@InCollection{ alle1,
+ Address = {New York},
+ Author = {Allaire, G. and Mikeli{\'c}, A.},
+ BookTitle = {Homogenization and porous media},
+ Pages = {45--76, 259--275},
+ Publisher = {Springer},
+ Series = {Interdiscip. Appl. Math.},
+ Title = {One-phase {N}ewtonian flow},
+ Volume = {6},
+ Year = {1997}
+}
+
+###InCollection{ alle1,
+ Address = {New York},
+ Author = {Allaire, G. and Mikeli{\'c}, A.},
+ BookTitle = {Homogenization and porous media},
+ Pages = {45--76, 259--275},
+ Publisher = {Springer},
+ Series = {Interdiscip. Appl. Math.},
+ Title = {One-phase {N}ewtonian flow},
+ Volume = {6},
+ Year = {1997}
+}
+
+@Book{ allen2013moss,
+ Title = {Moss \& Adams' Heart Disease in Infants, Children, and
+ Adolescents: Including the Fetus and Young Adult},
+ Author = {Allen, Hugh D and Driscoll, David J and Shaddy, Robert E
+ and Feltes, Timothy F},
+ Year = {2013},
+ Publisher = {Lippincott Williams \& Wilkins}
+}
+
+@Article{ alnaes_fenics_2015,
+ Title = {The {{FEniCS Project Version}} 1.5},
+ Author = {Aln{\ae}s, Martin and Blechta, Jan and Hake, Johan and
+ Johansson, August and Kehlet, Benjamin and Logg, Anders and
+ Richardson, Chris and Ring, Johannes and Rognes, Marie E.
+ and Wells, Garth N.},
+ Year = {2015},
+ Volume = {3},
+ ISSN = {2197-8263},
+ DOI = {10.11588/ans.2015.100.20553},
+ Abstract = {The FEniCS Project is a collaborative project for the
+ development of innovative concepts and tools for automated
+ scientific computing, with a particular focus on the
+ solution of differential equations by finite element
+ methods. The FEniCS Projects software consists of a
+ collection of interoperable software components, including
+ DOLFIN, FFC, FIAT, Instant, UFC, UFL, and mshr. This note
+ describes the new features and changes introduced in the
+ release of FEniCS version 1.5.},
+ copyright = {Copyright (c) 2015 Archive of Numerical Software},
+ Journal = {Archive of Numerical Software},
+ Language = {en},
+ Number = {100}
+}
+
+###Article{ alnaes_fenics_2015,
+ langid = {english},
+ Title = {The {{FEniCS Project Version}} 1.5},
+ Volume = {3},
+ ISSN = {2197-8263},
+ URL = {http://journals.ub.uni-heidelberg.de/index.php/ans/article/view/20553},
+ DOI = {10.11588/ans.2015.100.20553},
+ Abstract = {The FEniCS Project is a collaborative project for the
+ development of innovative concepts and tools for automated
+ scientific computing, with a particular focus on the
+ solution of differential equations by finite element
+ methods. The FEniCS Projects software consists of a
+ collection of interoperable software components, including
+ DOLFIN, FFC, FIAT, Instant, UFC, UFL, and mshr. This note
+ describes the new features and changes introduced in the
+ release of FEniCS version 1.5.},
+ Number = {100},
+ JournalTitle = {Archive of Numerical Software},
+ URLDate = {2016-01-29},
+ Date = {2015},
+ Author = {Alnæs, Martin and Blechta, Jan and Hake, Johan and
+ Johansson, August and Kehlet, Benjamin and Logg, Anders and
+ Richardson, Chris and Ring, Johannes and Rognes, Marie E.
+ and Wells, Garth N.}
+}
+
+@Article{ alnaesblechta2015a,
+ Title = {The FEniCS Project Version 1.5},
+ Author = {Martin S. Aln{\ae}s and Jan Blechta and Johan Hake and
+ August Johansson and Benjamin Kehlet and Anders Logg and
+ Chris Richardson and Johannes Ring and Marie E. Rognes and
+ Garth N. Wells},
+ Year = {2015},
+ Journal = {Archive of Numerical Software},
+ Volume = {3},
+ Number = {100},
+ DOI = {10.11588/ans.2015.100.20553},
+ page = {9-23}
+}
+
+@Article{ ambrosi2011jmps,
+ Title = {Perspectives on biological growth and remodeling},
+ Author = {Ambrosi, D and Ateshian, GA and Arruda, EM and Cowin, SC
+ and Dumais, J and Goriely, A and Holzapfel, Gerhard A and
+ Humphrey, JD and Kemkemer, R and Kuhl, E and others},
+ Journal = {Journal of the Mechanics and Physics of Solids},
+ Year = {2011},
+ Number = {4},
+ Pages = {863--883},
+ Volume = {59},
+ File = {:ambrosi11.pdf:PDF},
+ Keywords = {growth, remodeling},
+ Publisher = {Elsevier},
+ timestamp = {2015/01/12}
+}
+
+@Article{ amestoy_fully_2001,
+ Title = {A Fully Asynchronous Multifrontal Solver Using Distributed
+ Dynamic Scheduling},
+ Author = {Amestoy, Patrick R. and Duff, Iain S. and L'Excellent,
+ Jean-Yves and Koster, Jacko},
+ Year = {2001},
+ Volume = {23},
+ Pages = {15--41},
+ Journal = {SIAM Journal on Matrix Analysis and Applications},
+ Number = {1}
+}
+
+@Book{ amher-meddict-07,
+ Title = {{The American Heritage Medical Dictionary}},
+ Author = {},
+ Year = {2007},
+ Publisher = {Houghton Mifflin Company},
+ Edition = {}
+}
+
+###Book{ amher-meddict-07,
+ Title = {{The American Heritage Medical Dictionary}},
+ Author = {},
+ Year = {2007},
+ Publisher = {Houghton Mifflin Company},
+ Edition = {}
+}
+
+@Book{ anderson-tannehill-pletcher-84,
+ Author = {Anderson, D.A. and Tannehill, J.C. and Pletcher, R.H.},
+ Publisher = {Hemisphere, Mc Graw Hill},
+ Title = {Computational fluid mechanics and heat transfer},
+ Year = {1984}
+}
+
+###Book{ anderson-tannehill-pletcher-84,
+ Author = {Anderson, D.A. and Tannehill, J.C. and Pletcher, R.H.},
+ Publisher = {Hemisphere, Mc Graw Hill},
+ Title = {Computational fluid mechanics and heat transfer},
+ Year = {1984}
+}
+
+@Article{ andersson-halden-glomsaker-00,
+ Author = {Andersson, H.I. and Halden, R. and Glomsaker, T.},
+ Journal = {J. Biomechanics},
+ Pages = {1257-1262},
+ Title = {Effects of surface irregularities on flow resistance in
+ differently shaped arterial stenoses},
+ Volume = {33},
+ Year = {2000}
+}
+
+###Article{ andersson-halden-glomsaker-00,
+ Author = {Andersson, H.I. and Halden, R. and Glomsaker, T.},
+ Journal = {J. Biomechanics},
+ Pages = {1257-1262},
+ Title = {Effects of surface irregularities on flow resistance in
+ differently shaped arterial stenoses},
+ Volume = {33},
+ Year = {2000}
+}
+
+@InProceedings{ angelini-gerard-06,
+ Author = {Angelini, E. and G\'erard, O.},
+ BookTitle = {Proc. of the 28th IEEE EMBS Annual International
+ Conference},
+ date-added = {2009-03-10 12:17:56 -0700},
+ date-modified = {2009-03-10 12:18:08 -0700},
+ Title = {Review of Myocardial Motion Estimation Methods from
+ Optical Flow Tracking on Ultrasound Data},
+ Year = {2006}
+}
+
+###InProceedings{ angelini-gerard-06,
+ Author = {Angelini, E. and G\'erard, O.},
+ BookTitle = {Proc. of the 28th IEEE EMBS Annual International
+ Conference},
+ date-added = {2009-03-10 12:17:56 -0700},
+ date-modified = {2009-03-10 12:18:08 -0700},
+ Title = {Review of Myocardial Motion Estimation Methods from
+ Optical Flow Tracking on Ultrasound Data},
+ Year = {2006}
+}
+
+@Article{ angot-99,
+ Author = {Angot, Ph.},
+ code = {por10},
+ Journal = {Math. Meth. Appl. Sci.},
+ Pages = {1395-1412},
+ Title = {Analysis of singular perturbations on the Brinkman problem
+ for fictitious domain models of viscous flows},
+ Volume = {22},
+ Year = {1999}
+}
+
+###Article{ angot-99,
+ Author = {Angot, Ph.},
+ code = {por10},
+ Journal = {Math. Meth. Appl. Sci.},
+ Pages = {1395-1412},
+ Title = {Analysis of singular perturbations on the Brinkman problem
+ for fictitious domain models of viscous flows},
+ Volume = {22},
+ Year = {1999}
+}
+
+@Article{ angot-bruneau-fabrie-99,
+ Author = {Angot, Ph. and Bruneau, C.H and Fabrie, P.},
+ code = {por11},
+ Journal = {Numer. Math.},
+ Pages = {497--520},
+ Title = {A penalization method to take into account obstales in
+ incompressible viscous flows},
+ Volume = {81},
+ Year = {1999}
+}
+
+###Article{ angot-bruneau-fabrie-99,
+ Author = {Angot, Ph. and Bruneau, C.H and Fabrie, P.},
+ code = {por11},
+ Journal = {Numer. Math.},
+ Pages = {497--520},
+ Title = {A penalization method to take into account obstales in
+ incompressible viscous flows},
+ Volume = {81},
+ Year = {1999}
+}
+
+@Article{ ansalone2003ajc,
+ Title = {Biventricular pacing in heart failure: back to basics in
+ the pathophysiology of left bundle branch block to reduce
+ the number of nonresponders},
+ Author = {Ansalone, G. and Giannantoni, P. and Ricci, R. and
+ Trambaiolo, P. and Fedele, F. and Santini, M.},
+ Journal = {The American Journal of Cardiology},
+ Year = {2003},
+ Month = may,
+ Number = {9},
+ Pages = {55--61},
+ Volume = {91},
+ DOI = {10.1016/S0002-9149(02)03339-8},
+ File = {Ansalone_2003.pdf:/home/hoermann/.zotero/zotero/krpbc0h6.default/zotero/storage/JI8G97E8/Ansalone_2003.pdf:application/pdf},
+ ISSN = {00029149},
+ Keywords = {CRT},
+ Language = {en},
+ ShortTitle = {Biventricular pacing in heart failure},
+ URL = {http://linkinghub.elsevier.com/retrieve/pii/S0002914902033398},
+ URLDate = {2014-11-27}
+}
+
+@Article{ antiga2004robust,
+ Title = {Robust and objective decomposition and mapping of
+ bifurcating vessels},
+ Author = {Antiga, Luca and Steinman, David A},
+ Journal = {IEEE transactions on medical imaging},
+ Volume = {23},
+ Number = {6},
+ Pages = {704--713},
+ Year = {2004},
+ Publisher = {IEEE}
+}
+
+@Article{ antiga_image-based_2008,
+ Title = {An Image-Based Modeling Framework for Patient-Specific
+ Computational Hemodynamics},
+ Volume = {46},
+ Number = {11},
+ JournalTitle = {Medical \& biological engineering \& computing},
+ Year = {2008},
+ Pages = {1097},
+ Author = {Antiga, Luca and Piccinelli, Marina and Botti, Lorenzo and
+ Ene-Iordache, Bogdan and Remuzzi, Andrea and Steinman,
+ David A.}
+}
+
+@Article{ antille-descloux-flueck-romerio-99,
+ Annote = {mhd, aluminium, stability},
+ Author = {Antille, J.P. and Descloux, J. and Flueck, M. and Romerio,
+ M. V.},
+ code = {mhd24},
+ Journal = {Light Metal},
+ Pages = {333-338},
+ Title = {Eigenmodes and interface description in a {Hall-Heroult}
+ cell},
+ Year = {1999}
+}
+
+###Article{ antille-descloux-flueck-romerio-99,
+ Annote = {mhd, aluminium, stability},
+ Author = {Antille, J.P. and Descloux, J. and Flueck, M. and Romerio,
+ M. V.},
+ code = {mhd24},
+ Journal = {Light Metal},
+ Pages = {333-338},
+ Title = {Eigenmodes and interface description in a {Hall-Heroult}
+ cell},
+ Year = {1999}
+}
+
+@Book{ antontsev-kazhikov-monakhov-93,
+ Author = {Antontsev, S.N. and Kazhikov, A.V. and Monakhov, V.N.},
+ Publisher = {North-Holland},
+ Title = {Boundary values problems in mechanics of nonhomogeneous
+ fluids},
+ Year = {1993}
+}
+
+###Book{ antontsev-kazhikov-monakhov-93,
+ Author = {Antontsev, S.N. and Kazhikov, A.V. and Monakhov, V.N.},
+ Publisher = {North-Holland},
+ Title = {Boundary values problems in mechanics of nonhomogeneous
+ fluids},
+ Year = {1993}
+}
+
+@Article{ arai2011jcpt,
+ Title = {Magnetic resonance imaging for area at risk, myocardial
+ infarction, and myocardial salvage.},
+ Author = {Arai, Andrew E.},
+ Journal = {J Cardiovasc Pharmacol Ther},
+ Year = {2011},
+ Number = {3-4},
+ Pages = {313--320},
+ Volume = {16},
+ Abstract = {Almost all published preclinical studies of
+ cardioprotective agents include a measurement of area at
+ risk, infarct size, and thus allow determination of
+ myocardial salvage as an indicator of therapeutic benefit.
+ Until recently, single-photon emission tomography (SPECT)
+ imaging with injection of sestamibi prior to intervention
+ was the only clinical method suitable for making similar
+ assessments in patients. Over the past 5 years, a large
+ number of articles have documented that magnetic resonance
+ imaging (MRI) can noninvasively determine area at risk,
+ infarct size, and myocardial salvage. While T2-weighted
+ imaging has been the method used most commonly, precontrast
+ T1-weighted images and early gadolinium enhancement (EGE)
+ images can also determine the size of the area at risk. All
+ 3 of these MRI methods detect the area at risk based on
+ myocardial edema resulting from ischemia. Late gadolinium
+ enhancement (LGE) images provide a well-accepted reference
+ standard for infarct size in all of those methods. Finally,
+ LGE images can also provide a single modality measure of
+ myocardial salvage based on the "wave front" of myocardial
+ injury associated with the progressively more severe damage
+ associated with acute myocardial infarction (MI).
+ Essentially, the LGE images can provide an
+ endocardial-based snap shot of infarct size and salvaged
+ myocardium is estimated as the viable myocardium within the
+ circumferential extent of the infarct. Thus, the purpose of
+ this review is to provide an overview of how MRI can
+ determine the area at risk, infarct size, and thus measure
+ myocardial salvage.},
+ DOI = {10.1177/1074248411412378},
+ Institution = {Department of Health and Human Services, Cardiovascular
+ and Pulmonary Branch, National Heart, Lung and Blood
+ Institute, National Institutes of Health, Bethesda, MD
+ 20892, USA. araia@nih.gov},
+ Keywords = {Contrast Media, diagnostic use; Gadolinium, diagnostic
+ use; Humans; Magnetic Resonance Imaging, methods;
+ Myocardial Infarction,
+ diagnosis/physiopathology/radionuclide imaging;
+ Organotechnetium Compounds, diagnostic use},
+ Language = {eng},
+ medline-pst = {ppublish},
+ owner = {stoeckc},
+ pii = {16/3-4/313},
+ pmid = {21821534},
+ timestamp = {2015.07.24},
+ URL = {http://dx.doi.org/10.1177/1074248411412378}
+}
+
+@Article{ armero-simo-96,
+ Annote = {mhd, numerical scheme},
+ Author = {Armero, F. and Simo, J.C.},
+ code = {mhd16},
+ Journal = {Comp. Methods Appl. Mech. Engrg.},
+ Pages = {41-90},
+ Title = {Long-time dissipativity of time-stepping algorithms for an
+ abstract evolution equation with applications to the
+ incompressible {MHD} and {Navier-Stokes} equations},
+ Volume = {131},
+ Year = {1996}
+}
+
+###Article{ armero-simo-96,
+ Annote = {mhd, numerical scheme},
+ Author = {Armero, F. and Simo, J.C.},
+ code = {mhd16},
+ Journal = {Comp. Methods Appl. Mech. Engrg.},
+ Pages = {41-90},
+ Title = {Long-time dissipativity of time-stepping algorithms for an
+ abstract evolution equation with applications to the
+ incompressible {MHD} and {Navier-Stokes} equations},
+ Volume = {131},
+ Year = {1996}
+}
+
+@Article{ armour1970,
+ Author = {Armour, J.A. and Randall, W.C.},
+ Title = {Structural basis for cardiac function},
+ Volume = {218},
+ Number = {6},
+ Pages = {1517-1523},
+ Year = {1970},
+ Journal = {American Journal of Physiology -- Legacy Content}
+}
+
+@Article{ arzani_vivo_2012,
+ langid = {english},
+ Title = {In {{Vivo Validation}} of {{Numerical Prediction}} for
+ {{Turbulence Intensity}} in an {{Aortic Coarctation}}},
+ Volume = {40},
+ ISSN = {0090-6964, 1573-9686},
+ URL = {http://link.springer.com/10.1007/s10439-011-0447-6},
+ DOI = {10.1007/s10439-011-0447-6},
+ Number = {4},
+ JournalTitle = {Annals of Biomedical Engineering},
+ URLDate = {2019-02-06},
+ Year = {2012-04},
+ Pages = {860-870},
+ Author = {Arzani, Amirhossein and Dyverfeldt, Petter and Ebbers,
+ Tino and Shadden, Shawn C.}
+}
+
+@Article{ ashikaga2013hrythm,
+ Title = {Feasibility of image-based simulation to estimate ablation
+ target in human ventricular arrhythmia},
+ Author = {Ashikaga, Hiroshi and Arevalo, Hermenegild and
+ Vadakkumpadan, Fijoy and Blake, Robert C and Bayer, Jason D
+ and Nazarian, Saman and Zviman, M Muz and Tandri,
+ Harikrishna and Berger, Ronald D and Calkins, Hugh and
+ others},
+ Journal = {Heart Rhythm},
+ Volume = {10},
+ Number = {8},
+ Pages = {1109--1116},
+ Year = {2013},
+ Publisher = {Elsevier}
+}
+
+@Article{ assous-degond-heintze-raviart-segre-93,
+ Author = {Assous, F. and Degond, P. and Heintze, E. and Raviart,
+ P.A. and Segre J.},
+ Journal = {Jour. Comp. Phys.},
+ Pages = {222-237},
+ Title = {On a finite-element method for solving the three
+ dimensional {Maxwell} equations},
+ Volume = {109},
+ Year = {1993}
+}
+
+###Article{ assous-degond-heintze-raviart-segre-93,
+ Author = {Assous, F. and Degond, P. and Heintze, E. and Raviart,
+ P.A. and Segre J.},
+ Journal = {Jour. Comp. Phys.},
+ Pages = {222-237},
+ Title = {On a finite-element method for solving the three
+ dimensional {Maxwell} equations},
+ Volume = {109},
+ Year = {1993}
+}
+
+@PhdThesis{ astorino-10,
+ Author = {Astorino, M.},
+ Title = {Fluid-Structure Interaction in the Cardiovascular System.
+ Numerical Analysis and Simulation},
+ School = {Universit\'e Pierre et Marie Curie, Paris 6},
+ Year = 2010
+}
+
+###PhdThesis{ astorino-10,
+ Author = {Astorino, M.},
+ Title = {Fluid-Structure Interaction in the Cardiovascular System.
+ Numerical Analysis and Simulation},
+ School = {Universit\'e Pierre et Marie Curie, Paris 6},
+ Year = 2010
+}
+
+@Article{ astorino-chouly-fernandez-09,
+ Author = {Astorino, M. and Chouly, F. and Fern\'andez, M.A.},
+ DOI = {10.1016/j.crma.2008.11.003},
+ Journal = { C. R. Acad. Sci. Paris S\'er. I Math.},
+ Number = {1--2},
+ Pages = {99--104},
+ Title = {An added-mass free semi-implicit coupling scheme for
+ fluid-structure interaction},
+ Volume = {347},
+ Year = {2009}
+}
+
+###Article{ astorino-chouly-fernandez-09,
+ Author = {Astorino, M. and Chouly, F. and Fern\'andez, M.A.},
+ DOI = {10.1016/j.crma.2008.11.003},
+ Journal = { C. R. Acad. Sci. Paris S\'er. I Math.},
+ Number = {1--2},
+ Pages = {99--104},
+ Title = {An added-mass free semi-implicit coupling scheme for
+ fluid-structure interaction},
+ Volume = {347},
+ Year = {2009},
+ bdsk-url-1 = {http://dx.doi.org/10.1016/j.crma.2008.11.003}
+}
+
+@Unpublished{ astorino-grandmont-xx,
+ Author = {Astorino, M. and Grandmont, C.},
+ Note = {Submitted},
+ Title = {Convergence analysis of a projection semi-implicit
+ coupling scheme for fluid-structure interaction problems}
+}
+
+###Unpublished{ astorino-grandmont-xx,
+ Author = {Astorino, M. and Grandmont, C.},
+ Note = {Submitted},
+ Title = {Convergence analysis of a projection semi-implicit
+ coupling scheme for fluid-structure interaction problems}
+}
+
+@Article{ astorino09_robinsemiimpl,
+ Author = "Astorino, M. and Chouly, F. and Fern\'{a}ndez, M.~A.",
+ collaboration = {},
+ Title = {Robin Based Semi-Implicit Coupling in Fluid-Structure
+ Interaction: Stability Analysis and Numerics},
+ Publisher = {SIAM},
+ Year = {2009},
+ Journal = sisc,
+ Volume = {31},
+ Number = {6},
+ Pages = {4041-4065},
+ DOI = {10.1137/090749694}
+}
+
+###Article{ astorino09_robinsemiimpl,
+ Author = "Astorino, M. and Chouly, F. and Fern\'{a}ndez, M.~A.",
+ collaboration = {},
+ Title = {Robin Based Semi-Implicit Coupling in Fluid-Structure
+ Interaction: Stability Analysis and Numerics},
+ Publisher = {SIAM},
+ Year = {2009},
+ Journal = sisc,
+ Volume = {31},
+ Number = {6},
+ Pages = {4041-4065},
+ DOI = {10.1137/090749694}
+}
+
+@Article{ astorino2009fsivalves,
+ Title = {Fluid--structure interaction and multi-body contact:
+ application to aortic valves},
+ Author = {Astorino, Matteo and Gerbeau, Jean-Fr{\'e}d{\'e}ric and
+ Pantz, Olivier and Traore, Karim-Fr{\'e}d{\'e}ric},
+ Journal = {Computer Methods in Applied Mechanics and Engineering},
+ Volume = {198},
+ Number = {45-46},
+ Pages = {3603--3612},
+ Year = {2009},
+ Publisher = {Elsevier}
+}
+
+@Article{ astorino2012ris,
+ Title = {A robust and efficient valve model based on resistive
+ immersed surfaces},
+ Author = {Astorino, M. and Hamers, J. and Shadden, S. and Gerbeau,
+ J.},
+ Journal = {International Journal for Numerical Methods in Biomedical
+ Engineering},
+ Volume = {28},
+ Number = {9},
+ Pages = {937--959},
+ Year = {2012},
+ Publisher = {Wiley Online Library}
+}
+
+@Article{ astorino_robin_2010,
+ langid = {english},
+ Title = {Robin {{Based Semi}}-{{Implicit Coupling}} in
+ {{Fluid}}-{{Structure Interaction}}: {{Stability Analysis}}
+ and {{Numerics}}},
+ Volume = {31},
+ ISSN = {1064-8275, 1095-7197},
+ URL = {http://epubs.siam.org/doi/10.1137/090749694},
+ DOI = {10.1137/090749694},
+ ShortTitle = {Robin {{Based Semi}}-{{Implicit Coupling}} in
+ {{Fluid}}-{{Structure Interaction}}},
+ Abstract = {In this paper, we propose a semi-implicit coupling scheme
+ for the numerical simulation of ï¬uid-structure
+ interaction systems involving a viscous incompressible
+ ï¬uid. The scheme is stable irrespective of the so-called
+ added-mass eï¬ect and allows for conservative
+ time-stepping within the structure. The eï¬ciency of the
+ scheme is based on the explicit splitting of the viscous
+ eï¬ects and geometrical/convective nonlinearities through
+ the use of the ChorinâTemam projection scheme within the
+ ï¬uid. Stability comes from the implicit pressure-solid
+ coupling and a speciï¬c Robin treatment of the explicit
+ viscous-solid coupling, derived from Nitscheâs method.},
+ Number = {6},
+ JournalTitle = {SIAM Journal on Scientific Computing},
+ URLDate = {2018-09-19},
+ Date = {2010-01},
+ Pages = {4041-4065},
+ Author = {Astorino, Matteo and Chouly, Franz and Fernández, Miguel
+ A.}
+}
+
+@Article{ astrand-etal-11,
+ Author = {Astrand, H. and Stalhand, J. and Karlsson, J. and
+ Karlsson, M. and Sonesson, B. and L\"anne, T.},
+ Title = {In vivo estimation of the contribution of elastin and
+ collagen to the mechanical properties in the human
+ abdominal aorta: effect of age and sex},
+ Volume = {110},
+ Number = {1},
+ Pages = {176-187},
+ Year = {2011},
+ DOI = {10.1152/japplphysiol.00579.2010},
+ Abstract = {The mechanical properties of the aorta affect cardiac
+ function and are related to cardiovascular
+ morbidity/mortality. This study was designed to evaluate
+ the isotropic (mainly elastin, elastiniso) and anisotropic
+ (mainly collagen, collagenani) material parameters within
+ the human aorta in vivo. Thirty healthy men and women in
+ three different age categories (23â30, 41â54, and
+ 67â72 yr) were included. A novel mechanical model was
+ used to identify the mechanical properties and the strain
+ field with aid of simultaneously recorded pressure and
+ radius in the abdominal aorta. The magnitudes of the
+ material parameters relating to both the stiffness of
+ elastiniso and collagenani were in agreement with earlier
+ in vitro studies. The load-bearing fraction attributed to
+ collagenani oscillated from 10 to 30\% between diastolic
+ and systolic pressures during the cardiac cycle. With age,
+ stiffness of elastiniso increased in men, despite the
+ decrease in elastin content that has been found due to
+ elastolysis. Furthermore, an increase in stiffness of
+ collagenani at high physiological pressure was found. This
+ might be due to increased glycation, as well as changed
+ isoforms of collagen in the aortic wall with age. A marked
+ sex difference was observed, with a much less age-related
+ effect, both on elastiniso and collagenani stiffness in
+ women. Possible factors of importance could be the effect
+ of sex hormones, as well as differing collagen isoforms,
+ between the sexes.},
+ Journal = {Journal of Applied Physiology}
+}
+
+###Article{ astrand-etal-11,
+ Author = {Astrand, H. and Stalhand, J. and Karlsson, J. and
+ Karlsson, M. and Sonesson, B. and L\"anne, T.},
+ Title = {In vivo estimation of the contribution of elastin and
+ collagen to the mechanical properties in the human
+ abdominal aorta: effect of age and sex},
+ Volume = {110},
+ Number = {1},
+ Pages = {176-187},
+ Year = {2011},
+ DOI = {10.1152/japplphysiol.00579.2010},
+ Abstract = {The mechanical properties of the aorta affect cardiac
+ function and are related to cardiovascular
+ morbidity/mortality. This study was designed to evaluate
+ the isotropic (mainly elastin, elastiniso) and anisotropic
+ (mainly collagen, collagenani) material parameters within
+ the human aorta in vivo. Thirty healthy men and women in
+ three different age categories (23â30, 41â54, and
+ 67â72 yr) were included. A novel mechanical model was
+ used to identify the mechanical properties and the strain
+ field with aid of simultaneously recorded pressure and
+ radius in the abdominal aorta. The magnitudes of the
+ material parameters relating to both the stiffness of
+ elastiniso and collagenani were in agreement with earlier
+ in vitro studies. The load-bearing fraction attributed to
+ collagenani oscillated from 10 to 30\% between diastolic
+ and systolic pressures during the cardiac cycle. With age,
+ stiffness of elastiniso increased in men, despite the
+ decrease in elastin content that has been found due to
+ elastolysis. Furthermore, an increase in stiffness of
+ collagenani at high physiological pressure was found. This
+ might be due to increased glycation, as well as changed
+ isoforms of collagen in the aortic wall with age. A marked
+ sex difference was observed, with a much less age-related
+ effect, both on elastiniso and collagenani stiffness in
+ women. Possible factors of importance could be the effect
+ of sex hormones, as well as differing collagen isoforms,
+ between the sexes.},
+ URL = {http://jap.physiology.org/content/110/1/176.abstract},
+ EPrint = {http://jap.physiology.org/content/110/1/176.full.pdf+html},
+ Journal = {Journal of Applied Physiology}
+}
+
+@TechReport{ audusse-bristeau-perthame-00,
+ Author = {Audusse, E. and Bristeau, M. O. and Perthame, B.},
+ Institution = {INRIA},
+ Note = {http://www.inria.fr/RRRT/RR-3989.html},
+ Number = {3989},
+ Title = {Kinetic schemes for solving {S}aint-{V}enant equations
+ with source terms},
+ Type = {Rapport de Recherche},
+ Year = {2000}
+}
+
+###TechReport{ audusse-bristeau-perthame-00,
+ Author = {Audusse, E. and Bristeau, M. O. and Perthame, B.},
+ Institution = {INRIA},
+ Note = {http://www.inria.fr/RRRT/RR-3989.html},
+ Number = {3989},
+ Title = {Kinetic schemes for solving {S}aint-{V}enant equations
+ with source terms},
+ Type = {Rapport de Recherche},
+ Year = {2000}
+}
+
+@Article{ augustin2011assessment,
+ Title = {An assessment of discretizations for convection-dominated
+ convection--diffusion equations},
+ Author = {Augustin, Matthias and Caiazzo, Alfonso and Fiebach,
+ Andr{\'e} and Fuhrmann, J{\"u}rgen and John, Volker and
+ Linke, Alexander and Umla, Rudolf},
+ Journal = {Computer Methods in Applied Mechanics and Engineering},
+ Volume = {200},
+ Number = {47},
+ Pages = {3395--3409},
+ Year = {2011},
+ Publisher = {Elsevier}
+}
+
+@Article{ auroux-blum-08,
+ Author = {Auroux, D. and Blum, J.},
+ date-added = {2009-03-10 12:06:21 -0700},
+ date-modified = {2009-03-10 12:07:39 -0700},
+ Journal = {Nonlinear Processes Geophysics},
+ Pages = {305-319},
+ Title = {A nudging-based data assimilation method: the Back and
+ Forth Nudging (BFN) algorithm},
+ Volume = {15},
+ Year = {2008}
+}
+
+###Article{ auroux-blum-08,
+ Author = {Auroux, D. and Blum, J.},
+ date-added = {2009-03-10 12:06:21 -0700},
+ date-modified = {2009-03-10 12:07:39 -0700},
+ Journal = {Nonlinear Processes Geophysics},
+ Pages = {305-319},
+ Title = {A nudging-based data assimilation method: the Back and
+ Forth Nudging (BFN) algorithm},
+ Volume = {15},
+ Year = {2008}
+}
+
+@Article{ auroux-blum-08-npg,
+ Author = {Auroux, D. and Blum, J.},
+ Title = {A nudging-based data assimilation method for oceanographic
+ problems: the Back and Forth Nudging (BFN) algorithm},
+ Journal = {Nonlin. Proc. Geophys.},
+ Volume = {15},
+ Year = {2008},
+ Pages = {305--319}
+}
+
+###Article{ auroux-blum-08-npg,
+ Author = {Auroux, D. and Blum, J.},
+ Title = {A nudging-based data assimilation method for oceanographic
+ problems: the Back and Forth Nudging (BFN) algorithm},
+ Journal = {Nonlin. Proc. Geophys.},
+ Volume = {15},
+ Year = {2008},
+ Pages = {305--319}
+}
+
+@Article{ avril2010ani,
+ Title = {Anisotropic and hyperelastic identification of in vitro
+ human arteries from full-field optical measurements.},
+ Author = {Avril, S. and Badel, P. and Duprey, A.},
+ Journal = {J Biomech},
+ Volume = {43},
+ Number = {15},
+ Pages = {2978-85},
+ Year = {2010},
+ Abstract = {In this paper, we present a new approach for the bi-axial
+ characterization of in vitro human arteries and we prove
+ its feasibility on an example. The specificity of the
+ approach is that it can handle heterogeneous strain and
+ stress distributions in arterial segments. From the
+ full-field experimental data obtained in
+ inflation/extension tests, an inverse approach, called the
+ virtual fields method (VFM), is used for deriving the
+ material parameters of the tested arterial segment. The
+ obtained results are promising and the approach can
+ effectively provide relevant values for the anisotropic
+ hyperelastic properties of the tested sample. }
+}
+
+###Article{ avril2010ani,
+ Title = {Anisotropic and hyperelastic identification of in vitro
+ human arteries from full-field optical measurements.},
+ Author = {Avril, S. and Badel, P. and Duprey, A.},
+ Journal = {J Biomech},
+ Volume = {43},
+ Number = {15},
+ Pages = {2978-85},
+ Year = {2010},
+ Abstract = {In this paper, we present a new approach for the bi-axial
+ characterization of in vitro human arteries and we prove
+ its feasibility on an example. The specificity of the
+ approach is that it can handle heterogeneous strain and
+ stress distributions in arterial segments. From the
+ full-field experimental data obtained in
+ inflation/extension tests, an inverse approach, called the
+ virtual fields method (VFM), is used for deriving the
+ material parameters of the tested arterial segment. The
+ obtained results are promising and the approach can
+ effectively provide relevant values for the anisotropic
+ hyperelastic properties of the tested sample. }
+}
+
+@Article{ avril2015regional,
+ Title = {Regional identification of mechanical properties in
+ arteries},
+ Author = {Avril, St{\'e}phane and Bersi, Matthew R and Bellini,
+ Chiara and Genovese, Katia and Humphrey, Jay D},
+ Journal = {Computer methods in biomechanics and biomedical
+ engineering},
+ Volume = {18},
+ Number = {sup1},
+ Pages = {1874--1875},
+ Year = {2015},
+ Publisher = {Taylor \& Francis}
+}
+
+@Article{ axel1989r,
+ Title = {MR imaging of motion with spatial modulation of
+ magnetization.},
+ Author = {Axel, L. and Dougherty, L.},
+ Journal = {Radiology},
+ Year = {1989},
+ Month = {Jun},
+ Number = {3},
+ Pages = {841--845},
+ Volume = {171},
+ Abstract = {A novel magnetic resonance imaging technique provides
+ direct imaging of motion by spatially modulating the degree
+ of magnetization prior to imaging. The preimaging pulse
+ sequence consists of a radio-frequency (RF) pulse to
+ produce transverse magnetization, a magnetic field gradient
+ to "wrap" the phase along the direction of the gradient,
+ and a second RF pulse to mix the modulated transverse
+ magnetization with the longitudinal magnetization. The
+ resulting images show periodic stripes due to the
+ modulation. Motion between the time of striping and image
+ formation is directly demonstrated as a corresponding
+ displacement of the stripes. This technique can be used to
+ study heart wall motion, to distinguish slowly moving blood
+ from thrombus, and to study the flow of blood and
+ cerebrospinal fluid.},
+ DOI = {10.1148/radiology.171.3.2717762},
+ Institution = {Department of Radiology, Hospital of the University of
+ Pennsylvania, Philadelphia 19104.},
+ Keywords = {Adult; Blood Flow Velocity; Female; Heart Diseases,
+ diagnosis/etiology; Humans; Magnetic Resonance Imaging,
+ methods; Magnetics; Middle Aged; Mitral Valve Stenosis,
+ complications/physiopathology; Models, Structural; Motion;
+ Myocardial Contraction; Spinal Cord Neoplasms,
+ cerebrospinal fluid; Thrombosis, diagnosis/etiology},
+ Language = {eng},
+ medline-pst = {ppublish},
+ owner = {stoeckc},
+ pmid = {2717762},
+ timestamp = {2015.07.24},
+ URL = {http://dx.doi.org/10.1148/radiology.171.3.2717762}
+}
+
+@Article{ baaijens-01,
+ Author = {Baaijens, F.},
+ Journal = {Int. Jour. Num. Meth. Fluids},
+ Pages = {743-761},
+ Title = {A fictitious domain/mortar element method for
+ fluid-structure interaction},
+ Volume = {35},
+ Year = {2001}
+}
+
+###Article{ baaijens-01,
+ Author = {Baaijens, F.},
+ Journal = {Int. Jour. Num. Meth. Fluids},
+ Pages = {743-761},
+ Title = {A fictitious domain/mortar element method for
+ fluid-structure interaction},
+ Volume = {35},
+ Year = {2001}
+}
+
+@Article{ badel2011mec,
+ Title = {Mechanical identification of layer-specific properties of
+ mouse carotid arteries using 3D-DIC and a hyperelastic
+ anisotropic constitutive model.},
+ Author = {Badel, P. and Avril, S. and Lessner, S. and Sutton, M.},
+ Journal = {Computer Methods in Biomechanics and Biomedical
+ Engineering},
+ Pages = {37-48},
+ Volume = {15},
+ Number = {1},
+ Year = {2012},
+ Abstract = {The role of mechanics is known to be of primary order in
+ many arterial diseases; however, determining mechanical
+ properties of arteries remains a challenge. This paper
+ discusses the identifiability of the passive mechanical
+ properties of a mouse carotid artery, taking into account
+ the orientation of collagen fibres in the medial and
+ adventitial layers. On the basis of 3D digital image
+ correlation measurements of the surface strain during an
+ inflation/extension test, an inverse identification method
+ is set up. It involves a 3D finite element mechanical model
+ of the mechanical test and an optimisation algorithm. A
+ two-layer constitutive model derived from the Holzapfel
+ model is used, with five and then seven parameters. The
+ five-parameter model is successfully identified providing
+ layer-specific fibre angles. The seven-parameter model is
+ over parameterised, yet it is shown that additional data
+ from a simple tension test make the identification of
+ refined layer-specific data reliable. }
+}
+
+###Article{ badel2011mec,
+ Title = {Mechanical identification of layer-specific properties of
+ mouse carotid arteries using 3D-DIC and a hyperelastic
+ anisotropic constitutive model.},
+ Author = {Badel, P. and Avril, S. and Lessner, S. and Sutton, M.},
+ Journal = {Computer Methods in Biomechanics and Biomedical
+ Engineering},
+ Pages = {37-48},
+ Volume = {15},
+ Number = {1},
+ Year = {2012},
+ Abstract = {The role of mechanics is known to be of primary order in
+ many arterial diseases; however, determining mechanical
+ properties of arteries remains a challenge. This paper
+ discusses the identifiability of the passive mechanical
+ properties of a mouse carotid artery, taking into account
+ the orientation of collagen fibres in the medial and
+ adventitial layers. On the basis of 3D digital image
+ correlation measurements of the surface strain during an
+ inflation/extension test, an inverse identification method
+ is set up. It involves a 3D finite element mechanical model
+ of the mechanical test and an optimisation algorithm. A
+ two-layer constitutive model derived from the Holzapfel
+ model is used, with five and then seven parameters. The
+ five-parameter model is successfully identified providing
+ layer-specific fibre angles. The seven-parameter model is
+ over parameterised, yet it is shown that additional data
+ from a simple tension test make the identification of
+ refined layer-specific data reliable. }
+}
+
+@Article{ badia-codina-07,
+ Author = {Badia, S. and Codina, R.},
+ Journal = {Numer. Math.},
+ Pages = {533-557},
+ Title = {{Convergence analysis of the FEM approximation of the
+ first order projection method for incompressible flows with
+ and without the inf-sup condition}},
+ Volume = {107},
+ Year = {2007}
+}
+
+###Article{ badia-codina-07,
+ Author = {Badia, S. and Codina, R.},
+ Journal = {Numer. Math.},
+ Pages = {533-557},
+ Title = {{Convergence analysis of the FEM approximation of the
+ first order projection method for incompressible flows with
+ and without the inf-sup condition}},
+ Volume = {107},
+ Year = {2007}
+}
+
+@Article{ badia-nobile-vergara-08,
+ Author = {Badia, S. and Nobile, F. and Vergara, C.},
+ Journal = {J. Comp. Phys.},
+ Pages = {7027--7051},
+ Title = {Fluid-structure partitioned procedures based on {R}obin
+ transmission conditions},
+ Volume = {227},
+ Year = {2008}
+}
+
+###Article{ badia-nobile-vergara-08,
+ Author = {Badia, S. and Nobile, F. and Vergara, C.},
+ Journal = {J. Comp. Phys.},
+ Pages = {7027--7051},
+ Title = {Fluid-structure partitioned procedures based on {R}obin
+ transmission conditions},
+ Volume = {227},
+ Year = {2008}
+}
+
+@Article{ badia-quaini-quarteroni-08,
+ Author = {Badia, S. and Quaini, A. and Quarteroni, A.},
+ Journal = {SIAM J. Sci. Comput.},
+ Number = {4},
+ Pages = {1778--1805},
+ Title = {Splitting methods based on algebraic factorization for
+ fluid-structure interaction},
+ Volume = {30},
+ Year = {2008}
+}
+
+###Article{ badia-quaini-quarteroni-08,
+ Author = {Badia, S. and Quaini, A. and Quarteroni, A.},
+ Journal = {SIAM J. Sci. Comput.},
+ Number = {4},
+ Pages = {1778--1805},
+ Title = {Splitting methods based on algebraic factorization for
+ fluid-structure interaction},
+ Volume = {30},
+ Year = {2008}
+}
+
+@Article{ badiacodina07,
+ Author = "Badia, S. and Codina, R.",
+ Title = "{Convergence analysis of the FEM approximation of the
+ first order projection method for incompressible flows with
+ and without the inf-sup condition}",
+ Journal = "{Num. Math.}",
+ Volume = "107",
+ Pages = "533--557",
+ Year = "2007"
+}
+
+###Article{ badiacodina07,
+ Author = "Badia, S. and Codina, R.",
+ Title = "{Convergence analysis of the FEM approximation of the
+ first order projection method for incompressible flows with
+ and without the inf-sup condition}",
+ Journal = "{Num. Math.}",
+ Volume = "107",
+ Pages = "533--557",
+ Year = "2007"
+}
+
+@Article{ baek2005jelast,
+ Title = {Competition between radial expansion and thickening in the
+ enlargement of an intracranial saccular aneurysm},
+ Author = {Baek, S and Rajagopal, KR and Humphrey, JD},
+ Journal = {Journal of Elasticity},
+ Year = {2005},
+ Number = {1-3},
+ Pages = {13--31},
+ Volume = {80},
+ File = {baek05.pdf:baek05.pdf:PDF},
+ Publisher = {Springer},
+ timestamp = {2015/03/27}
+}
+
+@Article{ baer-cairncross-schunk-sackinger-rao-00,
+ Author = {Baer, T.A. and Cairncross, R.A. and Schunk, P.R. and
+ Sackinger, P.A. and Rao, R.R.},
+ code = {mob6},
+ Journal = {Int. Jour. Num. Meth. Fluids},
+ Pages = {405-427},
+ Title = {A finite element method for free surface flows of
+ incompressible fluids in three dimensions. {Part II}:
+ dynamic wetting line},
+ Volume = {33},
+ Year = {2000}
+}
+
+###Article{ baer-cairncross-schunk-sackinger-rao-00,
+ Author = {Baer, T.A. and Cairncross, R.A. and Schunk, P.R. and
+ Sackinger, P.A. and Rao, R.R.},
+ code = {mob6},
+ Journal = {Int. Jour. Num. Meth. Fluids},
+ Pages = {405-427},
+ Title = {A finite element method for free surface flows of
+ incompressible fluids in three dimensions. {Part II}:
+ dynamic wetting line},
+ Volume = {33},
+ Year = {2000}
+}
+
+@Article{ baiocchi-brezzi-franca-93,
+ Author = {Baiocchi, C. and Brezzi, F. and Franca, L.P.},
+ Journal = {Comp. Meth. Appl. Mech. Eng.},
+ Pages = {125-141},
+ Title = {Virtual bubbles and {Galerkin}-least-squares type
+ methods},
+ Volume = {105},
+ Year = {1993}
+}
+
+###Article{ baiocchi-brezzi-franca-93,
+ Author = {Baiocchi, C. and Brezzi, F. and Franca, L.P.},
+ Journal = {Comp. Meth. Appl. Mech. Eng.},
+ Pages = {125-141},
+ Title = {Virtual bubbles and {Galerkin}-least-squares type
+ methods},
+ Volume = {105},
+ Year = {1993}
+}
+
+@Article{ balaban2017high,
+ Title = {High-resolution data assimilation of cardiac mechanics
+ applied to a dyssynchronous ventricle},
+ Author = {Balaban, Gabriel and Finsberg, Henrik and Odland, Hans
+ Henrik and Rognes, Marie E and Ross, Stian and Sundnes,
+ Joakim and Wall, Samuel},
+ Journal = {International journal for numerical methods in biomedical
+ engineering},
+ Volume = {33},
+ Number = {11},
+ Pages = {e2863},
+ Year = {2017},
+ Publisher = {Wiley Online Library}
+}
+
+@TechReport{ balay_petsc_2018,
+ Title = {{{PETSc Users Manual}}},
+ Author = {Balay, Satish and Abhyankar, Shrirang and Adams, Mark F.
+ and Brown, Jed and Brune, Peter and Buschelman, Kris and
+ Dalcin, Lisandro and Dener, Alp and Eijkhout, Victor and
+ Gropp, William D. and Kaushik, Dinesh and Knepley, Matthew
+ G. and May, Dave A. and McInnes, Lois Curfman and Mills,
+ Richard Tran and Munson, Todd and Rupp, Karl and Sanan,
+ Patrick and Smith, Barry F. and Zampini, Stefano and Zhang,
+ Hong and Zhang, Hong},
+ Year = {2018},
+ Institution = {{Argonne National Laboratory}},
+ Number = {ANL-95/11 - Revision 3.10}
+}
+
+###Report{ balay_petsc_2018,
+ Title = {{{PETSc Users Manual}}},
+ URL = {http://www.mcs.anl.gov/petsc},
+ Number = {ANL-95/11 - Revision 3.10},
+ Institution = {{Argonne National Laboratory}},
+ Date = {2018},
+ Author = {Balay, Satish and Abhyankar, Shrirang and Adams, Mark F.
+ and Brown, Jed and Brune, Peter and Buschelman, Kris and
+ Dalcin, Lisandro and Dener, Alp and Eijkhout, Victor and
+ Gropp, William D. and Kaushik, Dinesh and Knepley, Matthew
+ G. and May, Dave A. and McInnes, Lois Curfman and Mills,
+ Richard Tran and Munson, Todd and Rupp, Karl and Sanan,
+ Patrick and Smith, Barry F. and Zampini, Stefano and Zhang,
+ Hong and Zhang, Hong}
+}
+
+@Article{ balocco-camara-frangi-08,
+ Title = {Towards regional elastography of intracranial aneurysms},
+ Author = {Balocco, S. and Camara, O. and Frangi, A.},
+ Journal = {Medical Image Computing and Computer-Assisted
+ Intervention--MICCAI 2008},
+ Pages = {131--138},
+ Year = {2008},
+ Publisher = {Springer}
+}
+
+###Article{ balocco-camara-frangi-08,
+ Title = {Towards regional elastography of intracranial aneurysms},
+ Author = {Balocco, S. and Camara, O. and Frangi, A.},
+ Journal = {Medical Image Computing and Computer-Assisted
+ Intervention--MICCAI 2008},
+ Pages = {131--138},
+ Year = {2008},
+ Publisher = {Springer}
+}
+
+@Article{ balocco-etal-07,
+ Title = {{Noninvasive Young's modulus evaluation of tissues
+ surrounding pulsatile vessels using ultrasound doppler
+ measurement}},
+ Author = {Balocco, S. and Basset, O. and Courbebaisse, G. and Boni,
+ E. and Tortoli, P. and Cachard, C.},
+ Journal = {Ultrasonics, Ferroelectrics and Frequency Control, IEEE
+ Transactions on},
+ Volume = {54},
+ Number = {6},
+ Pages = {1265--1271},
+ Year = {2007},
+ Publisher = {IEEE}
+}
+
+###Article{ balocco-etal-07,
+ Title = {{Noninvasive Young's modulus evaluation of tissues
+ surrounding pulsatile vessels using ultrasound doppler
+ measurement}},
+ Author = {Balocco, S. and Basset, O. and Courbebaisse, G. and Boni,
+ E. and Tortoli, P. and Cachard, C.},
+ Journal = {Ultrasonics, Ferroelectrics and Frequency Control, IEEE
+ Transactions on},
+ Volume = {54},
+ Number = {6},
+ Pages = {1265--1271},
+ Year = {2007},
+ Publisher = {IEEE}
+}
+
+@Article{ balocco-etal-10,
+ Title = {{Estimation of the viscoelastic properties of vessel walls
+ using a computational model and Doppler ultrasound}},
+ Author = {Balocco, S. and Basset, O. and Courbebaisse, G. and Boni,
+ E. and Frangi, A.F. and Tortoli, P. and Cachard, C.},
+ Journal = {Physics in Medicine and Biology},
+ Volume = {55},
+ Number = {12},
+ Pages = {3557},
+ Year = {2010},
+ Publisher = {IOP Publishing}
+}
+
+###Article{ balocco-etal-10,
+ Title = {{Estimation of the viscoelastic properties of vessel walls
+ using a computational model and Doppler ultrasound}},
+ Author = {Balocco, S. and Basset, O. and Courbebaisse, G. and Boni,
+ E. and Frangi, A.F. and Tortoli, P. and Cachard, C.},
+ Journal = {Physics in Medicine and Biology},
+ Volume = {55},
+ Number = {12},
+ Pages = {3557},
+ Year = {2010},
+ Publisher = {IOP Publishing}
+}
+
+@Article{ balossino_computational_2009,
+ Title = {Computational Models to Predict Stenosis Growth in Carotid
+ Arteries: Which Is the Role of Boundary Conditions?},
+ Volume = {12},
+ ShortTitle = {Computational Models to Predict Stenosis Growth in Carotid
+ Arteries},
+ Number = {1},
+ JournalTitle = {Computer methods in biomechanics and biomedical
+ engineering},
+ Year = {2009},
+ Pages = {113--123},
+ Author = {Balossino, R. and Pennati, Giancarlo and Migliavacca,
+ Francesco and Formaggia, Luca and Veneziani, A. and Tuveri,
+ M. and Dubini, G.}
+}
+
+@Article{ bang-lukkassen-99,
+ Author = {Bang, B. and Lukkassen, D.},
+ fjournal = {Applications of Mathematics},
+ Journal = {Appl. Math.},
+ Number = {4},
+ Pages = {309--319},
+ Title = {Application of homogenization theory related to {S}tokes
+ flow in porous media},
+ Volume = {44},
+ Year = {1999}
+}
+
+###Article{ bang-lukkassen-99,
+ Author = {Bang, B. and Lukkassen, D.},
+ fjournal = {Applications of Mathematics},
+ Journal = {Appl. Math.},
+ Number = {4},
+ Pages = {309--319},
+ Title = {Application of homogenization theory related to {S}tokes
+ flow in porous media},
+ Volume = {44},
+ Year = {1999}
+}
+
+@Book{ bankkunisch1989book,
+ Title = {Estimation techniques for distributed parameter systems},
+ Author = {Banks, H. T. and Kunisch, K.},
+ Publisher = {Birkh\"auser Boston Inc.},
+ Year = {1989},
+ Address = {Boston, MA},
+ Series = {Systems \& Control: Foundations \& Applications},
+ Volume = {1},
+ date-added = {2009-03-10 18:50:38 -0700},
+ date-modified = {2009-03-10 18:50:45 -0700}
+}
+
+@Book{ banks-kunisch-89,
+ Address = {Boston, MA},
+ Author = {Banks, H. T. and Kunisch, K.},
+ date-added = {2009-03-10 18:50:38 -0700},
+ date-modified = {2009-03-10 18:50:45 -0700},
+ Publisher = {Birkh\"auser Boston Inc.},
+ Series = {Systems \& Control: Foundations \& Applications},
+ Title = {Estimation techniques for distributed parameter systems},
+ Volume = {1},
+ Year = {1989}
+}
+
+###Book{ banks-kunisch-89,
+ Address = {Boston, MA},
+ Author = {Banks, H. T. and Kunisch, K.},
+ date-added = {2009-03-10 18:50:38 -0700},
+ date-modified = {2009-03-10 18:50:45 -0700},
+ Publisher = {Birkh\"auser Boston Inc.},
+ Series = {Systems \& Control: Foundations \& Applications},
+ Title = {Estimation techniques for distributed parameter systems},
+ Volume = {1},
+ Year = {1989}
+}
+
+@Article{ bansch2016posteriori,
+ Title = {A Posteriori Error Estimates for Pressure-Correction
+ Schemes},
+ Author = {BaÌnsch, E and Brenner, A},
+ Journal = {SIAM Journal on Numerical Analysis},
+ Volume = {54},
+ Number = {4},
+ Pages = {2323--2358},
+ Year = {2016},
+ Publisher = {SIAM}
+}
+
+@Article{ bao2003noise,
+ Title = {Noise reduction for magnetic resonance images via adaptive
+ multiscale products thresholding},
+ Author = {Bao, Paul and Zhang, Lei},
+ Journal = {Medical Imaging, IEEE Transactions on},
+ Volume = {22},
+ Number = {9},
+ Pages = {1089--1099},
+ Year = {2003},
+ Publisher = {IEEE}
+}
+
+###Article{ bao2003noise,
+ Title = {Noise reduction for magnetic resonance images via adaptive
+ multiscale products thresholding},
+ Author = {Bao, Paul and Zhang, Lei},
+ Journal = {Medical Imaging, IEEE Transactions on},
+ Volume = {22},
+ Number = {9},
+ Pages = {1089--1099},
+ Year = {2003},
+ Publisher = {IEEE}
+}
+
+@InProceedings{ baranger-guillope-saut-96,
+ Author = {Baranger, J. and Guillope, C. and Saut, J-C.},
+ BookTitle = {Rheology for polymer melt processing},
+ Editor = {Piau, J-M. and Agassant, J-F.},
+ Publisher = {Elsevier Sciences},
+ Title = {Mathematical analysis of differential models for
+ viscoelastics fluids},
+ Year = {1996}
+}
+
+###InProceedings{ baranger-guillope-saut-96,
+ Author = {Baranger, J. and Guillope, C. and Saut, J-C.},
+ BookTitle = {Rheology for polymer melt processing},
+ Editor = {Piau, J-M. and Agassant, J-F.},
+ Publisher = {Elsevier Sciences},
+ Title = {Mathematical analysis of differential models for
+ viscoelastics fluids},
+ Year = {1996}
+}
+
+@PhdThesis{ barbe-2001,
+ Author = {Barbe, L.},
+ School = {Univ. Paris 7},
+ Title = {M{\'e}canismes d'adh{\'e}rence des leucocytes aux fibres
+ synth{\'e}tiques. Application {\`a} la filtration du sang.},
+ Year = {2002}
+}
+
+###PhdThesis{ barbe-2001,
+ Author = {Barbe, L.},
+ School = {Univ. Paris 7},
+ Title = {M{\'e}canismes d'adh{\'e}rence des leucocytes aux fibres
+ synth{\'e}tiques. Application {\`a} la filtration du sang.},
+ Year = {2002}
+}
+
+@Article{ barber-etal-07,
+ Title = "Efficient computational fluid dynamics mesh generation by
+ image registration",
+ Journal = "Medical Image Analysis",
+ Volume = "11",
+ Number = "6",
+ Pages = "648 - 662",
+ Year = "2007",
+ Note = "",
+ ISSN = "1361-8415",
+ DOI = "10.1016/j.media.2007.06.011",
+ Author = "D.C. Barber and E. Oubel and A.F. Frangi and D.R. Hose",
+ Keywords = "CFD"
+}
+
+###Article{ barber-etal-07,
+ Title = "Efficient computational fluid dynamics mesh generation by
+ image registration",
+ Journal = "Medical Image Analysis",
+ Volume = "11",
+ Number = "6",
+ Pages = "648 - 662",
+ Year = "2007",
+ Note = "",
+ ISSN = "1361-8415",
+ DOI = "10.1016/j.media.2007.06.011",
+ Author = "D.C. Barber and E. Oubel and A.F. Frangi and D.R. Hose",
+ Keywords = "CFD"
+}
+
+@Article{ barber-etal-12,
+ Title = "Registration based segment growing for vascular
+ segmentation",
+ Journal = "Submitted to IEEE Transactions on Medical Imaging",
+ Volume = "",
+ Number = "",
+ Pages = "",
+ Year = "2012",
+ Note = "",
+ ISSN = "",
+ DOI = "",
+ Author = "Barber, D.C. and Staicu, C. and Valverde, I. and Beerbaum,
+ P. and Hose, D.R.",
+ Keywords = "CFD"
+}
+
+###Article{ barber-etal-12,
+ Title = "Registration based segment growing for vascular
+ segmentation",
+ Journal = "Submitted to IEEE Transactions on Medical Imaging",
+ Volume = "",
+ Number = "",
+ Pages = "",
+ Year = "2012",
+ Note = "",
+ ISSN = "",
+ DOI = "",
+ Author = "Barber, D.C. and Staicu, C. and Valverde, I. and Beerbaum,
+ P. and Hose, D.R.",
+ Keywords = "CFD"
+}
+
+@Article{ baretta_virtual_2011,
+ langid = {english},
+ Title = {Virtual Surgeries in Patients with Congenital Heart
+ Disease: A Multi-Scale Modelling Test Case},
+ URL = {https://royalsocietypublishing.org/doi/abs/10.1098/rsta.2011.0130},
+ ShortTitle = {Virtual Surgeries in Patients with Congenital Heart
+ Disease},
+ Abstract = {The objective of this work is to perform a virtual
+ planning of surgical repairs in patients with congenital
+ heart diseasesto test the predictive capability of a
+ closed-loop multi-scale model. As a first step, we
+ reproduced the pre-operative state of a specific patient
+ with a univentricular circulation and a bidirectional
+ cavopulmonary anastomosis (BCPA), starting from the
+ patient's clinical data. Namely, by adopting a closed-loop
+ multi-scale approach, the boundary conditions at the inlet
+ and outlet sections of the three-dimensional model were
+ automatically calculated by a lumped parameter network.
+ Successively, we simulated three alternative surgical
+ designs of the total cavopulmonary connection (TCPC). In
+ particular, a T-junction of the venae cavae to the
+ pulmonary arteries (T-TCPC), a design with an offset
+ between the venae cavae (O-TCPC) and a Y-graft design
+ (Y-TCPC) were compared. A multi-scale closed-loop model
+ consisting of a lumped parameter network representing the
+ whole circulation and a patient-...},
+ JournalTitle = {Philosophical Transactions of the Royal Society A:
+ Mathematical, Physical and Engineering Sciences},
+ URLDate = {2019-03-09},
+ Year = {2011-11-13},
+ Author = {Baretta, A. and Corsini, C. and Yang, W. and
+ Vignon-Clementel, I. E. and Marsden, A. L. and Feinstein,
+ J. A. and Hsia, T.-Y. and Dubini, G. and Migliavacca, F.
+ and Pennati, G. and Investigators, The Modeling of
+ Congenital Hearts Alliance (MOCHA)}
+}
+
+@Book{ barret-94,
+ Author = {R. Barrett and M. Berry and T. F. Chan and J. Demmel and
+ J. Donato and J. Dongarra and V. Eijkhout and R. Pozo and
+ C. Romine and H. Van der Vorst },
+ Publisher = {SIAM},
+ Title = {Templates for the Solution of Linear Systems: Building
+ Blocks for Iterative Methods, 2nd Edition},
+ Year = {1994}
+}
+
+###Book{ barret-94,
+ Author = {R. Barrett and M. Berry and T. F. Chan and J. Demmel and
+ J. Donato and J. Dongarra and V. Eijkhout and R. Pozo and
+ C. Romine and H. Van der Vorst },
+ Publisher = {SIAM},
+ Title = {Templates for the Solution of Linear Systems: Building
+ Blocks for Iterative Methods, 2nd Edition},
+ Year = {1994}
+}
+
+@Article{ barrett-01,
+ Author = {Barrett, K.E.},
+ code = {mhd40},
+ Journal = {Int. J. Numer. Meth. Engng},
+ Pages = {1893-1906},
+ Title = {Duct flow with a transverse magnetic field at high
+ Hartmann numbers},
+ Volume = {50},
+ Year = {2001}
+}
+
+###Article{ barrett-01,
+ Author = {Barrett, K.E.},
+ code = {mhd40},
+ Journal = {Int. J. Numer. Meth. Engng},
+ Pages = {1893-1906},
+ Title = {Duct flow with a transverse magnetic field at high
+ Hartmann numbers},
+ Volume = {50},
+ Year = {2001}
+}
+
+@Article{ baskurt_blood_2003,
+ langid = {english},
+ Title = {Blood Rheology and Hemodynamics},
+ Volume = {29},
+ ISSN = {0094-6176},
+ DOI = {10.1055/s-2003-44551},
+ Abstract = {Blood is a two-phase suspension of formed elements (i.e.,
+ red blood cells [RBCs], white blood cells [WBCs],
+ platelets) suspended in an aqueous solution of organic
+ molecules, proteins, and salts called plasma. The apparent
+ viscosity of blood depends on the existing shear forces
+ (i.e., blood behaves as a non-Newtonian fluid) and is
+ determined by hematocrit, plasma viscosity, RBC
+ aggregation, and the mechanical properties of RBCs. RBCs
+ are highly deformable, and this physical property
+ significantly contributes to aiding blood flow both under
+ bulk flow conditions and in the microcirculation. The
+ tendency of RBCs to undergo reversible aggregation is an
+ important determinant of apparent viscosity because the
+ size of RBC aggregates is inversely proportional to the
+ magnitude of shear forces; the aggregates are dispersed
+ with increasing shear forces, then reform under low-flow or
+ static conditions. RBC aggregation also affects the in vivo
+ fluidity of blood, especially in the low-shear regions of
+ the circulatory system. Blood rheology has been reported to
+ be altered in various physiopathological processes: (1)
+ Alterations of hematocrit significantly contribute to
+ hemorheological variations in diseases and in certain
+ extreme physiological conditions; (2) RBC deformability is
+ sensitive to local and general homeostasis, with RBC
+ deformability affected by alterations of the properties and
+ associations of membrane skeletal proteins, the ratio of
+ RBC membrane surface area to cell volume, cell morphology,
+ and cytoplasmic viscosity. Such alterations may result from
+ genetic disorders or may be induced by such factors as
+ abnormal local tissue metabolism, oxidant stress, and
+ activated leukocytes; and (3) RBC aggregation is mainly
+ determined by plasma protein composition and surface
+ properties of RBCs, with increased plasma concentrations of
+ acute phase reactants in inflammatory disorders a common
+ cause of increased RBC aggregation. In addition, RBC
+ aggregation tendency can be modified by alterations of RBC
+ surface properties because of RBC in vivo aging,
+ oxygen-free radicals, or proteolytic enzymes. Impairment of
+ blood fluidity may significantly affect tissue perfusion
+ and result in functional deteriorations, especially if
+ disease processes also disturb vascular properties.},
+ Number = {5},
+ JournalTitle = {Seminars in Thrombosis and Hemostasis},
+ ShortJournal = {Semin. Thromb. Hemost.},
+ Year = {2003-10},
+ Pages = {435-450},
+ Author = {Baskurt, Oguz K. and Meiselman, Herbert J.},
+ EPrintType = {pmid},
+ EPrint = {14631543}
+}
+
+@Collection{ baskurt_handbook_2007,
+ Location = {{Amsterdam ; Washington, DC}},
+ Title = {Handbook of Hemorheology and Hemodynamics},
+ ISBN = {978-1-58603-771-0},
+ PageTotal = {455},
+ Number = {v. 69},
+ Series = {Biomedical and Health Research},
+ Publisher = {{IOS Press}},
+ Year = {2007},
+ Editor = {Baskurt, OÄuz K.},
+ Note = {OCLC: ocn183145995}
+}
+
+@Article{ basser1994,
+ Title = {{Estimation of the Effective Self-Diffusion Tensor from
+ the NMR Spin Echo}},
+ Journal = "Journal of Magnetic Resonance, Series B",
+ Volume = "103",
+ Number = "3",
+ Pages = "247 - 254",
+ Year = "1994",
+ Note = "",
+ ISSN = "1064-1866",
+ Author = "P.J. Basser and J. Mattiello and D. Lebihan"
+}
+
+@Book{ batchelor_introduction_2010,
+ langid = {english},
+ Location = {{Cambridge}},
+ Title = {An Introduction to Fluid Dynamics},
+ Edition = {1. Cambridge mathematical ed., 14. print},
+ ISBN = {978-0-521-66396-0},
+ PageTotal = {615},
+ Series = {Cambridge Mathematical Library},
+ Publisher = {{Cambridge Univ. Press}},
+ Date = {2010},
+ Author = {Batchelor, G. K.},
+ Note = {OCLC: 838184093}
+}
+
+@Book{ bathe-96,
+ Author = {Bathe, K.J.},
+ Publisher = {Prentice Hall},
+ Title = {Finite Element Procedures},
+ Year = 1996
+}
+
+###Book{ bathe-96,
+ Author = {Bathe, K.J.},
+ Publisher = {Prentice Hall},
+ Title = {Finite Element Procedures},
+ Year = 1996
+}
+
+@Article{ bathe-kamm-99,
+ Author = {Bathe, M. and Kamm, R.D.},
+ code = {fsi10},
+ Journal = {J. Biomech. Engng.},
+ Pages = {361-369},
+ Title = {A fluid-structure interaction finite element analysis of
+ pulsative blood flow through a compliant stenotic artery},
+ Volume = {121},
+ Year = {1999}
+}
+
+###Article{ bathe-kamm-99,
+ Author = {Bathe, M. and Kamm, R.D.},
+ code = {fsi10},
+ Journal = {J. Biomech. Engng.},
+ Pages = {361-369},
+ Title = {A fluid-structure interaction finite element analysis of
+ pulsative blood flow through a compliant stenotic artery},
+ Volume = {121},
+ Year = {1999}
+}
+
+@Article{ bathe-zhang-04,
+ Author = {Bathe, K.J. and Zhang, H.},
+ Journal = {Int. J. Num. Meth. Engng.},
+ Title = {Finite element developments for general fluid flows with
+ structural interactions},
+ Year = {2004}
+}
+
+###Article{ bathe-zhang-04,
+ Author = {Bathe, K.J. and Zhang, H.},
+ Journal = {Int. J. Num. Meth. Engng.},
+ Title = {Finite element developments for general fluid flows with
+ structural interactions},
+ Year = {2004}
+}
+
+@Article{ bathe-zhang-ji-99,
+ Author = {Bathe, K.J. and Zhang, H. and Ji, S.},
+ Journal = {Comp. \& Struct.},
+ Number = {1-3},
+ Pages = {1-16},
+ Title = {Finite element analysis of fluid flows fully coupled with
+ structural interaction},
+ Volume = {72},
+ Year = {1999}
+}
+
+###Article{ bathe-zhang-ji-99,
+ Author = {Bathe, K.J. and Zhang, H. and Ji, S.},
+ Journal = {Comp. \& Struct.},
+ Number = {1-3},
+ Pages = {1-16},
+ Title = {Finite element analysis of fluid flows fully coupled with
+ structural interaction},
+ Volume = {72},
+ Year = {1999}
+}
+
+@Article{ baumgartner2009echo,
+ Title = "Echocardiographic Assessment of Valve Stenosis: EAE/ASE
+ Recommendations for Clinical Practice",
+ Author = "Helmut Baumgartner and Judy Hung and Javier Bermejo and
+ Chambers, {John B.} and Arturo Evangelista and Griffin,
+ {Brian P.} and Bernard Iung and Otto, {Catherine M.} and
+ Pellikka, {Patricia A.} and Miguel Quiñones",
+ Year = "2009",
+ Month = "1",
+ DOI = "10.1016/j.echo.2008.11.029",
+ Volume = "22",
+ Pages = "1--23",
+ Journal = "Journal of the American Society of Echocardiography",
+ ISSN = "0894-7317",
+ Publisher = "Mosby Inc.",
+ Number = "1"
+}
+
+@Article{ baumgartner_echocardiographic_2009,
+ langid = {english},
+ Title = {Echocardiographic {{Assessment}} of {{Valve Stenosis}}:
+ {{EAE}}/{{ASE Recommendations}} for {{Clinical Practice}}},
+ Volume = {22},
+ ISSN = {08947317},
+ URL = {https://linkinghub.elsevier.com/retrieve/pii/S0894731708007761},
+ DOI = {10.1016/j.echo.2008.11.029},
+ ShortTitle = {Echocardiographic {{Assessment}} of {{Valve Stenosis}}},
+ Number = {1},
+ JournalTitle = {Journal of the American Society of Echocardiography},
+ URLDate = {2019-02-09},
+ Year = {2009-01},
+ Pages = {1-23},
+ Author = {Baumgartner, Helmut and Hung, Judy and Bermejo, Javier and
+ Chambers, John B. and Evangelista, Arturo and Griffin,
+ Brian P. and Iung, Bernard and Otto, Catherine M. and
+ Pellikka, Patricia A. and Qui\~{}nones, Miguel}
+}
+
+@Article{ baumgartner_esc_2010,
+ Title = {{{ESC Guidelines}} for the Management of Grown-up
+ Congenital Heart Disease (New Version 2010) {{The Task
+ Force}} on the {{Management}} of {{Grown}}-up {{Congenital
+ Heart Disease}} of the {{European Society}} of
+ {{Cardiology}} ({{ESC}})},
+ Volume = {31},
+ Number = {23},
+ JournalTitle = {European heart journal},
+ Year = {2010},
+ Pages = {2915--2957},
+ Author = {Baumgartner, Helmut and Bonhoeffer, Philipp and De Groot,
+ Natasja MS and de Haan, Fokko and Deanfield, John Erik and
+ Galie, Nazzareno and Gatzoulis, Michael A. and
+ Gohlke-Baerwolf, Christa},
+ Options = {useprefix=true}
+}
+
+@Article{ baumgartner_overestimation_1999,
+ Title = {?Overestimation? of catheter gradients by Doppler
+ ultrasound in patients with aortic stenosis: a predictable
+ manifestation of pressure recovery},
+ Author = {Baumgartner, Helmut and Stefenelli, Thomas and
+ Niederberger, Julia and Schima, Heinrich and Maurer,
+ Gerald},
+ Journal = {Journal of the American College of Cardiology},
+ Volume = {33},
+ Number = {6},
+ Pages = {1655--1661},
+ Year = {1999},
+ Publisher = {Journal of the American College of Cardiology}
+}
+
+@Article{ bayer-etal-12,
+ Year = {2012},
+ ISSN = {0090-6964},
+ Journal = {Annals of Biomedical Engineering},
+ Volume = {40},
+ Issue = {10},
+ Title = {A Novel Rule-Based Algorithm for Assigning Myocardial
+ Fiber Orientation to Computational Heart Models},
+ Publisher = {Springer US},
+ Keywords = {Diffusion tensor; Magnetic resonance; Imaging; Finite
+ element; Mesh; LaplaceâDirichlet},
+ Author = {Bayer, J.D. and Blake, R.C. and Plank, G. and Trayanova,
+ N.A.},
+ Pages = {2243-2254},
+ Language = {English}
+}
+
+@Article{ bazilevs-gohean-hughes-09,
+ Author = {Bazilevs, Y. and Gohean, JR and Hughes, TJR and Moser, RD
+ and Zhang, Y.},
+ Journal = {Computer Methods in Applied Mechanics and Engineering},
+ Number = {45-46},
+ Pages = {3534--3550},
+ Publisher = {Elsevier},
+ Title = {Patient-specific isogeometric fluid-structure interaction
+ analysis of thoracic aortic blood flow due to implantation
+ of the Jarvik 2000 left ventricular assist device},
+ Volume = {198},
+ Year = {2009}
+}
+
+###Article{ bazilevs-gohean-hughes-09,
+ Author = {Bazilevs, Y. and Gohean, JR and Hughes, TJR and Moser, RD
+ and Zhang, Y.},
+ Journal = {Computer Methods in Applied Mechanics and Engineering},
+ Number = {45-46},
+ Pages = {3534--3550},
+ Publisher = {Elsevier},
+ Title = {Patient-specific isogeometric fluid-structure interaction
+ analysis of thoracic aortic blood flow due to implantation
+ of the Jarvik 2000 left ventricular assist device},
+ Volume = {198},
+ Year = {2009}
+}
+
+@Article{ bazilevs_variational_2007,
+ Title = {Variational Multiscale Residual-Based Turbulence Modeling
+ for Large Eddy Simulation of Incompressible Flows},
+ Volume = {197},
+ URL = {http://www.sciencedirect.com/science/article/pii/S0045782507003027},
+ Number = {1},
+ JournalTitle = {Computer Methods in Applied Mechanics and Engineering},
+ URLDate = {2016-11-06},
+ Date = {2007},
+ Pages = {173--201},
+ Author = {Bazilevs, Y. and Calo, V. M. and Cottrell, J. A. and
+ Hughes, T. J. R. and Reali, A. and Scovazzi, G.}
+}
+
+@Article{ beale-81,
+ Author = {Beale, J.T.},
+ Journal = {Comm. Pure Appl. Math.},
+ Pages = {359-392},
+ Title = {The initial value problem for the {Navier-Stokes}
+ equations with a free surface},
+ Volume = {34},
+ Year = {1981}
+}
+
+###Article{ beale-81,
+ Author = {Beale, J.T.},
+ Journal = {Comm. Pure Appl. Math.},
+ Pages = {359-392},
+ Title = {The initial value problem for the {Navier-Stokes}
+ equations with a free surface},
+ Volume = {34},
+ Year = {1981}
+}
+
+@Article{ beale-84,
+ Author = {Beale, J.T.},
+ Journal = {Arch. Rat. Mech. Anal.},
+ Pages = {307-352},
+ Title = {Large time regularity of viscous surface waves},
+ Volume = {84},
+ Year = {1984}
+}
+
+###Article{ beale-84,
+ Author = {Beale, J.T.},
+ Journal = {Arch. Rat. Mech. Anal.},
+ Pages = {307-352},
+ Title = {Large time regularity of viscous surface waves},
+ Volume = {84},
+ Year = {1984}
+}
+
+@Article{ beale-hou-lowengrub-93,
+ Author = {Beale, J.T. and Hou, T.Y. and Lowengrub, J.S.},
+ Journal = {Comm. Pure Appl. Math.},
+ Pages = {1269-1301},
+ Title = {Growth rates for the linearized motion of fluid interfaces
+ away from equilibrium},
+ Volume = {46},
+ Year = {1993}
+}
+
+###Article{ beale-hou-lowengrub-93,
+ Author = {Beale, J.T. and Hou, T.Y. and Lowengrub, J.S.},
+ Journal = {Comm. Pure Appl. Math.},
+ Pages = {1269-1301},
+ Title = {Growth rates for the linearized motion of fluid interfaces
+ away from equilibrium},
+ Volume = {46},
+ Year = {1993}
+}
+
+@InCollection{ beale-nishida-85,
+ Author = {Beale, J.T. and Nishida, T.},
+ BookTitle = {Recent topics in nonlinear {PDE II}},
+ Pages = {1-14},
+ Publisher = {North-Holland},
+ Series = {Lect. Notes Numer. Appl. Anal.},
+ Title = {Large-time behaviour of viscous surface waves},
+ Volume = {8},
+ Year = {1985}
+}
+
+###InCollection{ beale-nishida-85,
+ Author = {Beale, J.T. and Nishida, T.},
+ BookTitle = {Recent topics in nonlinear {PDE II}},
+ Pages = {1-14},
+ Publisher = {North-Holland},
+ Series = {Lect. Notes Numer. Appl. Anal.},
+ Title = {Large-time behaviour of viscous surface waves},
+ Volume = {8},
+ Year = {1985}
+}
+
+@Article{ becker-braack-vexler-05,
+ Author = {Becker, R. and Braack, M. and Vexler, B.},
+ Title = {Parameter identification for chemical models in combustion
+ problems},
+ Journal = {Appl. Numer. Math.},
+ Volume = {54},
+ Year = {2005},
+ Number = {3-4},
+ Pages = {519--536}
+}
+
+###Article{ becker-braack-vexler-05,
+ Author = {Becker, R. and Braack, M. and Vexler, B.},
+ Title = {Parameter identification for chemical models in combustion
+ problems},
+ Journal = {Appl. Numer. Math.},
+ Volume = {54},
+ Year = {2005},
+ Number = {3-4},
+ Pages = {519--536}
+}
+
+@Article{ becker-hansbo-stenberg-03,
+ Author = {Becker, R. and Hansbo, P. and Stenberg, R.},
+ Journal = {M2AN Math. Model. Numer. Anal.},
+ Number = {2},
+ Pages = {209--225},
+ Title = {A finite element method for domain decomposition with
+ non-matching grids},
+ Volume = {37},
+ Year = {2003}
+}
+
+###Article{ becker-hansbo-stenberg-03,
+ Author = {Becker, R. and Hansbo, P. and Stenberg, R.},
+ Journal = {M2AN Math. Model. Numer. Anal.},
+ Number = {2},
+ Pages = {209--225},
+ Title = {A finite element method for domain decomposition with
+ non-matching grids},
+ Volume = {37},
+ Year = {2003}
+}
+
+@Article{ becker03,
+ Author = "Becker, R. and Hansbo, P. and Stenberg, R.",
+ Title = "{A finite element method for domain decomposition with
+ non-matching grids}",
+ Journal = m2an,
+ Volume = "37",
+ Number = "2",
+ Pages = "209--225",
+ Year = "2003"
+}
+
+###Article{ becker03,
+ Author = "Becker, R. and Hansbo, P. and Stenberg, R.",
+ Title = "{A finite element method for domain decomposition with
+ non-matching grids}",
+ Journal = m2an,
+ Volume = "37",
+ Number = "2",
+ Pages = "209--225",
+ Year = "2003"
+}
+
+@Book{ becker1996weighted,
+ Title = {Weighted a posteriori error control in FE methods},
+ Author = {Becker, Roland and Rannacher, Rolf},
+ Year = {1996},
+ Publisher = {Citeseer}
+}
+
+@Article{ beekman-etal-83,
+ Author = {Beekman, R.H. and Katz, B.P. and Moorehead-Steffens, C.
+ and Rocchini, A.P.},
+ Title = {Altered baroreceptor function in children with systolic
+ hypertension after coarctation repair},
+ Journal = {Am J Cardiol},
+ Volume = {52},
+ Year = {1983},
+ Number = {1},
+ Pages = {112-7},
+ pubmedid = {6858899},
+ ISSN = {0002-9149}
+}
+
+###Article{ beekman-etal-83,
+ Author = {Beekman, R.H. and Katz, B.P. and Moorehead-Steffens, C.
+ and Rocchini, A.P.},
+ Title = {Altered baroreceptor function in children with systolic
+ hypertension after coarctation repair},
+ Journal = {Am J Cardiol},
+ Volume = {52},
+ Year = {1983},
+ Number = {1},
+ Pages = {112-7},
+ URL = {http://www.biomedsearch.com/nih/Altered-baroreceptor-function-in-children/6858899.html},
+ pubmedid = {6858899},
+ ISSN = {0002-9149}
+}
+
+@InCollection{ begue-conca-murat-pironneau-88,
+ Address = {Harlow},
+ Author = {B{\`e}gue, C. and Conca, C. and Murat, F. and Pironneau,
+ O.},
+ BookTitle = {Nonlinear partial differential equations and their
+ applications. Coll{\`e}ge de France Seminar, Vol.\ IX
+ (Paris, 1985--1986)},
+ Pages = {179--264},
+ Publisher = {Longman Sci. Tech.},
+ Title = {Les {\'e}quations de {S}tokes et de {N}avier-{S}tokes avec
+ des conditions aux limites sur la pression},
+ Year = {1988}
+}
+
+###InCollection{ begue-conca-murat-pironneau-88,
+ Address = {Harlow},
+ Author = {B{\`e}gue, C. and Conca, C. and Murat, F. and Pironneau,
+ O.},
+ BookTitle = {Nonlinear partial differential equations and their
+ applications. Coll{\`e}ge de France Seminar, Vol.\ IX
+ (Paris, 1985--1986)},
+ Pages = {179--264},
+ Publisher = {Longman Sci. Tech.},
+ Title = {Les {\'e}quations de {S}tokes et de {N}avier-{S}tokes avec
+ des conditions aux limites sur la pression},
+ Year = {1988}
+}
+
+@Article{ beirao-96,
+ Author = {Beirao da Veiga, H.},
+ Journal = {Nonlinear Anal., Theory, Meth. Appl.},
+ Number = {11},
+ Pages = {1229-1239},
+ Title = {Long time behaviour of the solutions to the
+ {Navier-Stokes} equations with diffusion},
+ Volume = {27},
+ Year = {1996}
+}
+
+###Article{ beirao-96,
+ Author = {Beirao da Veiga, H.},
+ Journal = {Nonlinear Anal., Theory, Meth. Appl.},
+ Number = {11},
+ Pages = {1229-1239},
+ Title = {Long time behaviour of the solutions to the
+ {Navier-Stokes} equations with diffusion},
+ Volume = {27},
+ Year = {1996}
+}
+
+@Article{ bel-brunon2014jmbbm,
+ Title = {Numerical identification method for the non-linear
+ viscoelastic compressible behavior of soft tissue using
+ uniaxial tensile tests and image registration ? Application
+ to rat lung parenchyma },
+ Author = {A. Bel-Brunon and S. Kehl and C. Martin and S. Uhlig and
+ W.A. Wall},
+ Journal = {Journal of the Mechanical Behavior of Biomedical Materials
+ },
+ Year = {2014},
+ Pages = {360 - 374},
+ Volume = {29},
+ Abstract = {Abstract This paper presents an improved identification
+ method of the constitutive properties of lung parenchyma.
+ We aim to determine the non-linear viscoelastic behavior of
+ lung parenchyma with a particular focus on the compressible
+ properties - i.e. the ability to change volume. Uniaxial
+ tensile tests are performed on living precision-cut rat
+ lung slices. Image registration is used to compute the
+ displacement field at the surface of the sample. The
+ constitutive model consists of a hyperelastic potential
+ split into volumetric and isochoric contributions and a
+ viscous contribution. This allows for the description of
+ the experimentally observed hysteresis loop. The
+ identification is performed numerically: each test is
+ simulated using the realistic geometry of the sample; the
+ difference between the measured and computed displacements
+ is minimized with an optimization algorithm. We compare
+ several hyperelastic potentials and we can determine the
+ most suitable law for rat lung parenchyma. An exponential
+ potential or a polynomial potential with a first order term
+ and a third or higher order term give similarly
+ satisfactory results. The identified parameters are: for
+ the volumetric contribution: ? =7.25e4 Pa, for the
+ exponential form: k1=4.34e3 Pa, k2=5.92, for the polynomial
+ form: C1=2.87e3 Pa, C3=3.83e4 Pa. The identification of the
+ time parameter for the viscous contribution shows that it
+ depends on the loading frequency (0.2 Hz: ? =0.257 s, 0.4
+ Hz: ? =0.123 s, 0.8 Hz: ? =0.050 s). Adding a viscous
+ contribution significantly increases the accuracy of the
+ identification. },
+ DOI = {http://dx.doi.org/10.1016/j.jmbbm.2013.09.018},
+ File = {bel-brunon14.pdf:bel-brunon14.pdf:PDF},
+ ISSN = {1751-6161},
+ Keywords = {Lung parenchyma},
+ timestamp = {2015/09/23},
+ URL = {http://www.sciencedirect.com/science/article/pii/S1751616113003196}
+}
+
+@Unpublished{ belhadj,
+ Author = {Belhadj, M.},
+ Note = {Thesis in preparation, Univ. Paris 6 and ENIT},
+ Title = {Modelling and simulation of white blood cells filtration}
+}
+
+###Unpublished{ belhadj,
+ Author = {Belhadj, M.},
+ Note = {Thesis in preparation, Univ. Paris 6 and ENIT},
+ Title = {Modelling and simulation of white blood cells filtration}
+}
+
+@Unpublished{ belhadj-cances-gerbeau-mikelic,
+ Author = {Belhadj, M. and Canc{\`e}s, E. and Gerbeau, J.F. and
+ Mikelic, A.},
+ Note = {INRIA Research Report No 5277, 2004},
+ Title = { Homogenization approach to filtration through a fibrous
+ medium}
+}
+
+###Unpublished{ belhadj-cances-gerbeau-mikelic,
+ Author = {Belhadj, M. and Canc{\`e}s, E. and Gerbeau, J.F. and
+ Mikelic, A.},
+ Note = {INRIA Research Report No 5277, 2004},
+ Title = { Homogenization approach to filtration through a fibrous
+ medium}
+}
+
+@Article{ belhadj-gerbeau-perthame-03,
+ Author = {Belhadj, M. and Gerbeau, J-F. and Perthame, B.},
+ Journal = {Asymptotic Analysis},
+ Number = {1},
+ Pages = {41-54},
+ Title = { A multiscale colloid transport model with anistropic
+ degenerate diffusion},
+ Volume = {34},
+ Year = {2003}
+}
+
+###Article{ belhadj-gerbeau-perthame-03,
+ Author = {Belhadj, M. and Gerbeau, J-F. and Perthame, B.},
+ Journal = {Asymptotic Analysis},
+ Number = {1},
+ Pages = {41-54},
+ Title = { A multiscale colloid transport model with anistropic
+ degenerate diffusion},
+ Volume = {34},
+ Year = {2003}
+}
+
+@Article{ beliaev-kozlov-96,
+ Author = {Beliaev, A. Yu. and Kozlov, S. M.},
+ fjournal = {Communications on Pure and Applied Mathematics},
+ Journal = {Comm. Pure Appl. Math.},
+ Number = {1},
+ Pages = {1--34},
+ Title = {Darcy equation for random porous media},
+ Volume = {49},
+ Year = {1996}
+}
+
+###Article{ beliaev-kozlov-96,
+ Author = {Beliaev, A. Yu. and Kozlov, S. M.},
+ fjournal = {Communications on Pure and Applied Mathematics},
+ Journal = {Comm. Pure Appl. Math.},
+ Number = {1},
+ Pages = {1--34},
+ Title = {Darcy equation for random porous media},
+ Volume = {49},
+ Year = {1996}
+}
+
+@Book{ bellman-57,
+ Author = {Bellman, R.E.},
+ date-added = {2011-08-24 11:52:57 +0200},
+ date-modified = {2011-08-24 11:53:28 +0200},
+ Publisher = {Princeton University Press},
+ Title = {Dynamic programming},
+ Year = {1957}
+}
+
+###Book{ bellman-57,
+ Author = {Bellman, R.E.},
+ date-added = {2011-08-24 11:52:57 +0200},
+ date-modified = {2011-08-24 11:53:28 +0200},
+ Publisher = {Princeton University Press},
+ Title = {Dynamic programming},
+ Year = {1957}
+}
+
+@Article{ beltrami1994circ,
+ Title = {Structural basis of end-stage failure in ischemic
+ cardiomyopathy in humans.},
+ Author = {Beltrami, C A and Finato, N and Rocco, M and Feruglio, G A
+ and Puricelli, C and Cigola, E and Quaini, F and
+ Sonnenblick, E H and Olivetti, G and Anversa, P},
+ Journal = {Circulation},
+ Year = {1994},
+ Number = {1},
+ Pages = {151-63},
+ Volume = {89},
+ Abstract = {BACKGROUND Ischemic cardiomyopathy is characterized by
+ myocyte loss, reactive cellular hypertrophy, and
+ ventricular scarring. However, the relative contribution of
+ these tissue and cellular processes to late failure remains
+ to be determined.METHODS AND RESULTS Ten hearts were
+ obtained from individuals undergoing cardiac
+ transplantation as a result of chronic coronary artery
+ disease in its terminal stage. An identical number of
+ control hearts were collected at autopsy from patients who
+ died from causes other than cardiovascular disease, and
+ morphometric methodologies were applied to the analysis of
+ the left and right ventricular myocardium. Left ventricular
+ hypertrophy evaluated as a change in organ weight,
+ aggregate myocyte mass, and myocyte cell volume per nucleus
+ showed increases of 85%, 47%, and 103%, respectively.
+ Corresponding increases in the right ventricle were 75%,
+ 74%, and 112%. Myocyte loss, which accounted for 28% and
+ 30% in the left and right ventricles, was responsible for
+ the difference in the assessment of myocyte hypertrophy at
+ the ventricular, tissue, and cellular levels. Left
+ ventricular muscle cell hypertrophy was accomplished
+ through a 16% and 51% increase in myocyte diameter and
+ length, whereas right ventricular myocyte hypertrophy was
+ the consequence of a 13% and 67% increase in these linear
+ dimensions, respectively. Moreover, a 36% reduction in the
+ number of myocytes included in the thickness of the left
+ ventricular wall was found. Collagen accumulation in the
+ form of segmental, replacement, and interstitial fibrosis
+ comprised an average 28% and 13% of the left and right
+ ventricular myocardia, respectively. The combination of
+ cell loss and myocardial fibrosis, myocyte lengthening, and
+ mural slippage of cells resulted in 4.6-fold expansion of
+ left ventricular cavitary volume and a 56% reduction in the
+ ventricular mass-to-chamber volume ratio.CONCLUSIONS These
+ results are consistent with the contention that both
+ myocyte and collagen compartments participate in the
+ development of decompensated eccentric ventricular
+ hypertrophy in the cardiomyopathic heart of ischemic
+ origin.},
+ DOI = {10.1161/01.CIR.89.1.151},
+ EPrint = {http://circ.ahajournals.org/content/89/1/151.full.pdf+html},
+ File = {beltrami94.pdf:beltrami94.pdf:PDF},
+ timestamp = {2015/09/17},
+ URL = {http://circ.ahajournals.org/content/89/1/151.abstract}
+}
+
+@PhdThesis{ ben-salah-99,
+ Annote = {mhd, finite element},
+ Author = {Ben Salah, N.},
+ code = {mhd37},
+ School = {Concordia University},
+ Title = {A finite element method for the fully-coupled
+ magnetohydrodynamics},
+ Year = {1999}
+}
+
+###PhdThesis{ ben-salah-99,
+ Annote = {mhd, finite element},
+ Author = {Ben Salah, N.},
+ code = {mhd37},
+ School = {Concordia University},
+ Title = {A finite element method for the fully-coupled
+ magnetohydrodynamics},
+ Year = {1999}
+}
+
+@TechReport{ ben-salah-soulaimani-habashi-99,
+ Annote = {mhd, finite element, stabilization},
+ Author = {Ben Salah, N. and Soulaimani, A. and Habashi, W. G.},
+ code = {mhd20},
+ Institution = {AIAA 99-3322},
+ Title = {A fully coupled finite element method for the 3{D} {MHD}
+ equations with a {GMRES}-based algorithm},
+ Year = {1999}
+}
+
+###TechReport{ ben-salah-soulaimani-habashi-99,
+ Annote = {mhd, finite element, stabilization},
+ Author = {Ben Salah, N. and Soulaimani, A. and Habashi, W. G.},
+ code = {mhd20},
+ Institution = {AIAA 99-3322},
+ Title = {A fully coupled finite element method for the 3{D} {MHD}
+ equations with a {GMRES}-based algorithm},
+ Year = {1999}
+}
+
+@Article{ ben-salah-soulaimani-habashi-fortin-99,
+ Annote = {mhd, finite element, stabilization},
+ Author = {Ben Salah, N. and Soulaimani, A. and Habashi, W. G. and
+ Fortin, M.},
+ code = {mhd21},
+ Journal = {Int. Jour. Num. Meth. Fluids},
+ Pages = {535-554},
+ Title = {A conservative stabilized finite element method for the
+ magneto-hydrodynamic equations},
+ Volume = {29},
+ Year = {1999}
+}
+
+###Article{ ben-salah-soulaimani-habashi-fortin-99,
+ Annote = {mhd, finite element, stabilization},
+ Author = {Ben Salah, N. and Soulaimani, A. and Habashi, W. G. and
+ Fortin, M.},
+ code = {mhd21},
+ Journal = {Int. Jour. Num. Meth. Fluids},
+ Pages = {535-554},
+ Title = {A conservative stabilized finite element method for the
+ magneto-hydrodynamic equations},
+ Volume = {29},
+ Year = {1999}
+}
+
+@Article{ benney-73,
+ Author = {Benney, D. J.},
+ Journal = {Stud. Appl. Math.},
+ Pages = {45--50},
+ Title = {Some properties of long waves},
+ Volume = {52},
+ Year = {1973}
+}
+
+###Article{ benney-73,
+ Author = {Benney, D. J.},
+ Journal = {Stud. Appl. Math.},
+ Pages = {45--50},
+ Title = {Some properties of long waves},
+ Volume = {52},
+ Year = {1973}
+}
+
+@Book{ bensoussan-71,
+ Author = {Bensoussan, A.},
+ date-added = {2009-03-10 12:00:24 -0700},
+ date-modified = {2009-03-10 12:00:34 -0700},
+ Publisher = {Dunod},
+ rating = {5},
+ read = {Yes},
+ Title = {Filtrage optimal des syst{\`e}mes lin{\'e}aires},
+ Year = {1971}
+}
+
+###Book{ bensoussan-71,
+ Author = {Bensoussan, A.},
+ date-added = {2009-03-10 12:00:24 -0700},
+ date-modified = {2009-03-10 12:00:34 -0700},
+ Publisher = {Dunod},
+ rating = {5},
+ read = {Yes},
+ Title = {Filtrage optimal des syst{\`e}mes lin{\'e}aires},
+ Year = {1971}
+}
+
+@Book{ bensoussan-lions-papanicolaou-78,
+ Address = {Amsterdam},
+ Author = {Bensoussan, A. and Lions, J.-L. and Papanicolaou, G.},
+ Pages = {xxiv+700},
+ Publisher = {North-Holland Publishing Co.},
+ Series = {Studies in Mathematics and its Applications},
+ Title = {Asymptotic analysis for periodic structures},
+ Volume = {5},
+ Year = {1978}
+}
+
+###Book{ bensoussan-lions-papanicolaou-78,
+ Address = {Amsterdam},
+ Author = {Bensoussan, A. and Lions, J.-L. and Papanicolaou, G.},
+ Pages = {xxiv+700},
+ Publisher = {North-Holland Publishing Co.},
+ Series = {Studies in Mathematics and its Applications},
+ Title = {Asymptotic analysis for periodic structures},
+ Volume = {5},
+ Year = {1978}
+}
+
+@Article{ benzi_numerical_2005,
+ Title = {Numerical Solution of Saddle Point Problems},
+ Author = {Benzi, Michele and Golub, Gene H. and Liesen, J{\"o}rg},
+ Year = {2005},
+ Month = may,
+ Volume = {14},
+ Pages = {1--137},
+ ISSN = {0962-4929, 1474-0508},
+ DOI = {10.1017/S0962492904000212},
+ Journal = {Acta Numerica},
+ Language = {en}
+}
+
+@Article{ berberoglu2014ejms,
+ Title = {Computational modeling of coupled cardiac electromechanics
+ incorporating cardiac dysfunctions },
+ Author = {Ezgi Berbero?lu and H. Onur Solmaz and Serdar Göktepe},
+ Journal = {European Journal of Mechanics - A/Solids },
+ Year = {2014},
+ Note = {Frontiers in Finite-Deformation Electromechanics },
+ Pages = {60 - 73},
+ Volume = {48},
+ Abstract = {Abstract Computational models have huge potential to
+ improve our understanding of the coupled biological,
+ electrical, and mechanical underpinning mechanisms of
+ cardiac function and diseases. This contribution is
+ concerned with the computational modeling of different
+ cardiac dysfunctions related to the excitation?contraction
+ coupling in the heart. To this end, the coupled problem of
+ cardiac electromechanics is formulated through the
+ conservation of linear momentum equation and the excitation
+ equation formulated in the Eulerian setting and solved
+ monolithically through an entirely finite element-based
+ implicit algorithm. To model the electromechanical
+ coupling, we use the recently proposed, novel generalized
+ Hill model that is based on the multiplicative
+ decomposition of the deformation gradient into the active
+ and passive parts and on the additive split of the free
+ energy function. This framework enables us to combine the
+ advantageous features of the active-stress and the active-
+ strain models suggested in literature. The proposed coupled
+ approach is further supplemented by the Windkesel-based
+ model to account for the pressure evolution within the
+ ventricular chambers during the cardiac cycle. This allows
+ us to generate the pressure?volume curves as a diagnostic
+ tool to detect possible cardiac dysfunctions and to assess
+ the efficiency of the heart function. The proposed model is
+ employed to investigate different pathological cases that
+ include infarction, eccentric hypertrophy, and concentric
+ hypertrophy. The effects of these distinct cardiac
+ dysfunctions on the pressure?volume curves and on the
+ overall excitation?contraction of the heart are
+ computationally examined and compared to the clinical
+ observations reported in literature. },
+ DOI = {http://dx.doi.org/10.1016/j.euromechsol.2014.02.021},
+ File = {berberoglu14.pdf:berberoglu14.pdf:PDF},
+ ISSN = {0997-7538},
+ Keywords = {Coupled cardiac electromechanics},
+ timestamp = {2015/09/22},
+ URL = {http://www.sciencedirect.com/science/article/pii/S0997753814000540}
+}
+
+@Article{ berger-jameson-85,
+ Author = {Berger, M.J. and Jameson, A.},
+ Journal = {AIAA J.},
+ Number = {4},
+ Pages = {561--568},
+ Title = {{Automatic adaptive grid refinement for Euler equations}},
+ Volume = {23},
+ Year = {1985}
+}
+
+###Article{ berger-jameson-85,
+ Author = {Berger, M.J. and Jameson, A.},
+ Journal = {AIAA J.},
+ Number = {4},
+ Pages = {561--568},
+ Title = {{Automatic adaptive grid refinement for Euler equations}},
+ Volume = {23},
+ Year = {1985}
+}
+
+@Book{ bergh-lofstrom-76,
+ Author = {Bergh, J. and L{\"o}fstr{\"o}m, J.},
+ Publisher = {Springer-Verlag},
+ Title = {Interpolation spaces, an introduction},
+ Year = {1976}
+}
+
+###Book{ bergh-lofstrom-76,
+ Author = {Bergh, J. and L{\"o}fstr{\"o}m, J.},
+ Publisher = {Springer-Verlag},
+ Title = {Interpolation spaces, an introduction},
+ Year = {1976}
+}
+
+@Article{ bermudez-salgado,
+ Author = {Berm{\'u}dez, A. and Salgado, P.},
+ code = {mhd46},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Number = {1-3},
+ Pages = {391--412},
+ Title = {A domain decomposition/finite element method for the
+ numerical simulation of electrolytic cells},
+ Volume = {188},
+ Year = {2000}
+}
+
+###Article{ bermudez-salgado,
+ Author = {Berm{\'u}dez, A. and Salgado, P.},
+ code = {mhd46},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Number = {1-3},
+ Pages = {391--412},
+ Title = {A domain decomposition/finite element method for the
+ numerical simulation of electrolytic cells},
+ Volume = {188},
+ Year = {2000}
+}
+
+@InCollection{ bernardi-maday-patera-93,
+ Address = {Dordrecht},
+ Author = {Bernardi, C. and Maday, Y. and Patera, A. T.},
+ BookTitle = {Asymptotic and numerical methods for partial differential
+ equations with critical parameters (Beaune, 1992)},
+ Pages = {269--286},
+ Publisher = {Kluwer Acad. Publ.},
+ Series = {NATO Adv. Sci. Inst. Ser. C Math. Phys. Sci.},
+ Title = {Domain decomposition by the mortar element method},
+ Volume = {384},
+ Year = {1993}
+}
+
+###InCollection{ bernardi-maday-patera-93,
+ Address = {Dordrecht},
+ Author = {Bernardi, C. and Maday, Y. and Patera, A. T.},
+ BookTitle = {Asymptotic and numerical methods for partial differential
+ equations with critical parameters (Beaune, 1992)},
+ Pages = {269--286},
+ Publisher = {Kluwer Acad. Publ.},
+ Series = {NATO Adv. Sci. Inst. Ser. C Math. Phys. Sci.},
+ Title = {Domain decomposition by the mortar element method},
+ Volume = {384},
+ Year = {1993}
+}
+
+@InCollection{ bernardi-maday-patera-94,
+ Author = {Bernardi, C. and Maday, Y. and Patera, A. T.},
+ BookTitle = {Nonlinear partial differential equations and their
+ applications. Coll{\`e}ge de France Seminar, Vol.\ XI
+ (Paris, 1989--1991)},
+ Pages = {13--51},
+ Publisher = {Longman Sci. Tech.},
+ Series = {Pitman Res. Notes Math. Ser.},
+ Title = {A new nonconforming approach to domain decomposition: the
+ mortar element method},
+ Volume = {299},
+ Year = {1994}
+}
+
+###InCollection{ bernardi-maday-patera-94,
+ Author = {Bernardi, C. and Maday, Y. and Patera, A. T.},
+ BookTitle = {Nonlinear partial differential equations and their
+ applications. Coll{\`e}ge de France Seminar, Vol.\ XI
+ (Paris, 1989--1991)},
+ Pages = {13--51},
+ Publisher = {Longman Sci. Tech.},
+ Series = {Pitman Res. Notes Math. Ser.},
+ Title = {A new nonconforming approach to domain decomposition: the
+ mortar element method},
+ Volume = {299},
+ Year = {1994}
+}
+
+@Article{ bernardi-metivet-pernaud-thomas-95,
+ Author = {Bernardi, C. and M{\'e}tivet, B. and Pernaud-Thomas, B.},
+ Journal = {Mod{\'e}lisation math{\'e}\-matique et Analyse
+ num{\'e}\-rique},
+ Number = {7},
+ Pages = {871-921},
+ Title = {Couplage des {\'e}quations de {Navier-Stokes} et de la
+ chaleur~: le mod{\`e}le et son approximation par
+ {\'e}l{\'e}ments finis},
+ Volume = {29},
+ Year = {1995}
+}
+
+###Article{ bernardi-metivet-pernaud-thomas-95,
+ Author = {Bernardi, C. and M{\'e}tivet, B. and Pernaud-Thomas, B.},
+ Journal = {Mod{\'e}lisation math{\'e}\-matique et Analyse
+ num{\'e}\-rique},
+ Number = {7},
+ Pages = {871-921},
+ Title = {Couplage des {\'e}quations de {Navier-Stokes} et de la
+ chaleur~: le mod{\`e}le et son approximation par
+ {\'e}l{\'e}ments finis},
+ Volume = {29},
+ Year = {1995}
+}
+
+@Article{ bernardi-pironneau-91,
+ Author = {Bernardi, C. and Pironneau, O.},
+ Journal = {Comm. Partial Differential Equations},
+ Number = {1},
+ Pages = {59--104},
+ Title = {On the shallow water equations at low {R}eynolds number},
+ Volume = {16},
+ Year = {1991}
+}
+
+###Article{ bernardi-pironneau-91,
+ Author = {Bernardi, C. and Pironneau, O.},
+ Journal = {Comm. Partial Differential Equations},
+ Number = {1},
+ Pages = {59--104},
+ Title = {On the shallow water equations at low {R}eynolds number},
+ Volume = {16},
+ Year = {1991}
+}
+
+@Book{ bernstein2004mripulseseq,
+ Title = {Handbook of {MRI} Pulse Sequences},
+ Author = {Bernstein, Matt A. and King, Kevin F. and Zhou, Xiaohong
+ Joe},
+ Publisher = {Elsevier},
+ Year = {2004},
+ Abstract = {Magnetic Resonance Imaging (MRI) is among the most
+ important medical imaging techniques available today. There
+ is an installed base of approximately 15,000 MRI scanners
+ worldwide. Each of these scanners is capable of running
+ many different "pulse sequences", which are governed by
+ physics and engineering principles, and implemented by
+ software programs that control the MRI hardware. To utilize
+ an MRI scanner to the fullest extent, a conceptual
+ understanding of its pulse sequences is crucial. This book
+ offers a complete guide that can help the scientists,
+ engineers, clinicians, and technologists in the field of
+ MRI understand and better employ their
+ scanner.\ensuremath{\cdot}Explains pulse sequences, their
+ components, and the associated image reconstruction methods
+ commonly used in MRI\ensuremath{\cdot}Provides
+ self-contained sections for individual
+ techniques\ensuremath{\cdot}Can be used as a quick
+ reference guide or as a resource for deeper
+ study\ensuremath{\cdot}Includes both non-mathematical and
+ mathematical descriptions \ensuremath{\cdot}Contains
+ numerous figures, tables, references, and worked example problems},
+ ISBN = {9780080533124},
+ Language = {en},
+ owner = {david},
+ timestamp = {2015-05-27 21:31:22}
+}
+
+@Article{ bersi2016novel,
+ Title = {Novel methodology for characterizing regional variations
+ in the material properties of murine aortas},
+ Author = {Bersi, Matthew R and Bellini, Chiara and Di Achille, Paolo
+ and Humphrey, Jay D and Genovese, Katia and Avril,
+ St{\'e}phane},
+ Journal = {Journal of biomechanical engineering},
+ Volume = {138},
+ Number = {7},
+ Pages = {071005},
+ Year = {2016},
+ Publisher = {American Society of Mechanical Engineers}
+}
+
+@Article{ bersi2018local,
+ Title = {Local variations in material and structural properties
+ characterize murine thoracic aortic aneurysm mechanics},
+ Author = {Bersi, Matthew R and Bellini, Chiara and Humphrey, Jay D
+ and Avril, St{\'e}phane},
+ Journal = {Biomechanics and modeling in mechanobiology},
+ Pages = {1--16},
+ Year = {2018},
+ Publisher = {Springer}
+}
+
+@InCollection{ bertagna_data_2014,
+ langid = {english},
+ Location = {{Basel}},
+ Title = {Data {{Assimilation}} in {{Cardiovascular
+ Fluid}}--{{Structure Interaction Problems}}: {{An
+ Introduction}}},
+ ISBN = {978-3-0348-0822-4},
+ URL = {https://doi.org/10.1007/978-3-0348-0822-4_6},
+ ShortTitle = {Data {{Assimilation}} in {{Cardiovascular
+ Fluid}}--{{Structure Interaction Problems}}},
+ Abstract = {Numerical methods for incompressible fluid dynamics have
+ recently received a strong impulse from the applications to
+ the cardiovascular system. In particular, fluid--structure
+ interaction methods have been extensively investigated in
+ view of an accurate and possibly fast simulation of blood
+ flow in arteries and veins. This has been strongly
+ motivated by the progressive interest in using numerical
+ tools not only for understanding the general physiology and
+ pathology of the vascular system. The opportunity offered
+ by medical images properly preprocessed and elaborated to
+ simulate blood flow in real patients highlighted the
+ potential impact of scientific computing on the clinical
+ practice. Therefore, in silico experiments are currently
+ extensively used in bioengineering for completing (and
+ sometimes driving) more traditional in vivo and in vitro
+ investigations. Parallel to the development of numerical
+ models, the need for quantitative analysis for diagnostic
+ purposes has strongly stimulated the design of new methods
+ and instruments for measurements and imaging. Thanks to
+ these developments, a huge amount of data is nowadays
+ available. Data Assimilation is the accurate merging of
+ measures (including images) and numerical simulations for a
+ mathematically sound integration of different sources of
+ information. The outcome of this process includes both the
+ patient-specific measures and the general principles
+ underlying the development of mathematical models. In this
+ way, simulations are adapted to the availability of
+ individual data and are therefore supposed to be more
+ reliable; measures are correspondingly filtered by the
+ mathematical models assumed to describe the underlying
+ phenomena, resulting in a (hopefully) significant reduction
+ of the noise.This chapter provides an introduction to
+ methods for data assimilation, mostly developed in fields
+ like meteorology, applied to computational hemodynamics. We
+ focus mainly on two of them: methods based on stochastic
+ arguments (Kalman filtering) and variational methods. We
+ also address some examples that have been approached with
+ different techniques, in particular the estimation of
+ vascular compliance from displacement measures.},
+ BookTitle = {Fluid-{{Structure Interaction}} and {{Biomedical
+ Applications}}},
+ Series = {Advances in {{Mathematical Fluid Mechanics}}},
+ Publisher = {{Springer Basel}},
+ URLDate = {2019-02-20},
+ Year = {2014},
+ Pages = {395-481},
+ Author = {Bertagna, Luca and D'Elia, Marta and Perego, Mauro and
+ Veneziani, Alessandro},
+ Editor = {Bodnár, Tomáš and Galdi, Giovanni P. and Nečasová, Šárka},
+ DOI = {10.1007/978-3-0348-0822-4_6}
+}
+
+@Article{ bertoglio-etal-observers-12,
+ Author = {Bertoglio, C. and Chapelle, D. and Fern\'andez, M. and
+ Gerbeau, JF. and Moireau, P.},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Title = {State observers of a vascular fluidâstructure
+ interaction model through measurements in the solid},
+ Year = {2013},
+ Volume = {256},
+ Pages = {149--168}
+}
+
+@Article{ bertoglio-etal-observersfsi-12,
+ Author = {Bertoglio, C. and Chapelle, D. and Fern\'andez, M.A. and
+ Gerbeau, J-F. and Moireau, P.},
+ date-modified = {2012-05-01 12:52:26 +0000},
+ Journal = cmame,
+ Title = {{State observers of a vascular fluid-structure interaction
+ model through measurements in the solid}},
+ Year = {2012},
+ Note = {To appear}
+}
+
+###Article{ bertoglio-etal-observersfsi-12,
+ Author = {Bertoglio, C. and Chapelle, D. and Fern\'andez, M.A. and
+ Gerbeau, J-F. and Moireau, P.},
+ date-modified = {2012-05-01 12:52:26 +0000},
+ Journal = cmame,
+ Title = {{State observers of a vascular fluid-structure interaction
+ model through measurements in the solid}},
+ Year = {2012},
+ Note = {To appear}
+}
+
+@InProceedings{ bertoglio-fernandez-gerbeau-moireau-09,
+ Author = {Bertoglio, C. and Fern\'andez, M.A. and Gerbeau, J-F. and
+ Moireau, Ph. },
+ Title = {Filtering-based data assimilation in fluid-structure
+ interaction: towards personalization of vascular models },
+ BookTitle = {1st International Conference on Mathematical and
+ Computational Biomedical Engineering - CMBE},
+ Year = 2009,
+ Editor = {P.Nithiarasu and R.L\"ohner}
+}
+
+###InProceedings{ bertoglio-fernandez-gerbeau-moireau-09,
+ Author = {Bertoglio, C. and Fern\'andez, M.A. and Gerbeau, J-F. and
+ Moireau, Ph. },
+ Title = {Filtering-based data assimilation in fluid-structure
+ interaction: towards personalization of vascular models },
+ BookTitle = {1st International Conference on Mathematical and
+ Computational Biomedical Engineering - CMBE},
+ Year = 2009,
+ Editor = {P.Nithiarasu and R.L\"ohner}
+}
+
+@Article{ bertoglio-moireau-gerbeau-11,
+ Author = "Bertoglio, C. and Moireau, P. and Gerbeau, J.-F.",
+ Title = "{Sequential parameter estimation for fluid-structure
+ problems. Application to hemodynamics}",
+ Journal = "Int. J. Num. Meth. Biomed. Engn",
+ Volume = 0,
+ Pages = "00-00",
+ Year = "2011"
+}
+
+###Article{ bertoglio-moireau-gerbeau-11,
+ Author = "Bertoglio, C. and Moireau, P. and Gerbeau, J.-F.",
+ Title = "{Sequential parameter estimation for fluid-structure
+ problems. Application to hemodynamics}",
+ Journal = "Int. J. Num. Meth. Biomed. Engn",
+ Volume = 0,
+ Pages = "00-00",
+ Year = "2011"
+}
+
+@Article{ bertoglio2012ijnmbe,
+ Title = {Sequential parameter estimation in fluid-structure
+ problems. Application to hemodynamics},
+ Author = {Bertoglio, C. and Moireau, P. and Gerbeau, JF.},
+ Journal = {International Journal for Numerical Methods in Biomedical
+ Engineering},
+ Year = {2012},
+ Pages = {434--455},
+ Volume = {28},
+ bdsk-url-1 = {http://dx.doi.org/0.1002/cnm.1476},
+ date-modified = {2012-05-01 13:06:30 +0000},
+ DOI = {0.1002/cnm.1476},
+ Issue = {4},
+ Keywords = {FSI, inverse problems, Kalman Filter}
+}
+
+@Article{ bertoglio2013cmame,
+ Title = {State observers of a vascular fluid-structure interaction
+ model through measurements in the solid},
+ Author = {Bertoglio, C. and Chapelle, D. and Fern\'andez, M.A. and
+ Gerbeau, J-F. and Moireau, P.},
+ Journal = {Computational Methods in Applied Mechanics and
+ Engineering},
+ Year = {2013},
+ Note = {To appear},
+ date-modified = {2012-05-01 12:52:26 +0000},
+ Keywords = {FSI, luenberger observer}
+}
+
+@Article{ bertoglio2013sisc,
+ Title = {Fractional-step schemes for the coupling of distributed
+ and lumped models in hemodynamics},
+ Author = {Bertoglio, C. and Caiazzo, A. and Fern\'andez, M.A.},
+ Journal = {SIAM Journal of Scientific Computing},
+ Year = {2013},
+ Number = {3},
+ Pages = {B551-B575},
+ Volume = {35},
+ date-modified = {2012-05-01 13:06:38 +0000},
+ DOI = {10.1137/120874412},
+ Keywords = {windkessel, projection method, Navier-Stokes}
+}
+
+@Article{ bertoglio2014jbmech,
+ Title = {Identification of artery wall stiffness: in vitro
+ validation and in vivo results of a data assimilation
+ procedure applied to a 3D fluid-structure interaction
+ model},
+ Author = {Bertoglio, C. and Barber, D. and Gaddum, N. and Valverde,
+ I. and Rutten, M. and Beerbaum, P. and Moireau, P. and
+ Hose, R. and Gerbeau, JF.},
+ Journal = {Journal of Biomechanics},
+ Year = {2014},
+ Number = {5},
+ Pages = {1027--1034},
+ Volume = {47},
+ date-modified = {2012-05-01 13:07:00 +0000},
+ DOI = {10.1016/j.jbiomech.2013.12.029},
+ ISSN = {0021-9290},
+ Keywords = {FSI, inverse problems},
+ URL = {http://dx.doi.org/10.1016/j.jbiomech.2013.12.029}
+}
+
+@Article{ bertoglio2014tangential,
+ Title = {A tangential regularization method for backflow
+ stabilization in hemodynamics},
+ Author = {Bertoglio, Crist{\'o}bal and Caiazzo, Alfonso},
+ Journal = {Journal of Computational Physics},
+ Volume = {261},
+ Pages = {162--171},
+ Year = {2014},
+ Publisher = {Academic Press}
+}
+
+@Article{ bertoglio2016stab,
+ Title = {A Stokes-residual backflow stabilization method applied to
+ physiological flows},
+ Author = {Bertoglio, Crist{\'o}bal and Caiazzo, Alfonso},
+ Journal = {Journal of Computational Physics},
+ Volume = {313},
+ Pages = {260--278},
+ Year = {2016},
+ Publisher = {Elsevier}
+}
+
+@Article{ bertoglio2016stokes,
+ Title = {A {S}tokes-residual backflow stabilization method applied
+ to physiological flows},
+ Author = {Bertoglio, Crist{\'o}bal and Caiazzo, Alfonso},
+ Journal = {Journal of Computational Physics},
+ Volume = {313},
+ Pages = {260--278},
+ Year = {2016},
+ Publisher = {Elsevier}
+}
+
+###Article{ bertoglio2016stokes,
+ Title = {A {S}tokes-residual backflow stabilization method applied
+ to physiological flows},
+ Author = {Bertoglio, Crist{\'o}bal and Caiazzo, Alfonso},
+ Journal = {Journal of Computational Physics},
+ Volume = {313},
+ Pages = {260--278},
+ Year = {2016},
+ Publisher = {Elsevier}
+}
+
+@Article{ bertoglio_benchmark_2017,
+ Title = {Benchmark Problems for Numerical Treatment of Backflow at
+ Open Boundaries},
+ Volume = {34},
+ ISSN = {2040-7939},
+ URL = {https://onlinelibrary.wiley.com/doi/full/10.1002/cnm.2918},
+ DOI = {10.1002/cnm.2918},
+ Abstract = {Abstract In computational fluid dynamics, incoming
+ velocity at open boundaries, or backflow, often yields
+ unphysical instabilities already for moderate Reynolds
+ numbers. Several treatments to overcome these backflow
+ instabilities have been proposed in the literature.
+ However, these approaches have not yet been compared in
+ detail in terms of accuracy in different physiological
+ regimes, in particular because of the difficulty to
+ generate stable reference solutions apart from analytical
+ forms. In this work, we present a set of benchmark problems
+ in order to compare different methods in different backflow
+ regimes (with a full reversal flow and with propagating
+ vortices after a stenosis). The examples are implemented in
+ FreeFem++, and the source code is openly available, making
+ them a solid basis for future method developments.},
+ Number = {2},
+ JournalTitle = {International Journal for Numerical Methods in Biomedical
+ Engineering},
+ ShortJournal = {International Journal for Numerical Methods in Biomedical
+ Engineering},
+ URLDate = {2018-12-12},
+ Date = {2017-07-25},
+ Pages = {e2918},
+ Author = {Bertoglio, Cristóbal and Caiazzo, Alfonso and Bazilevs,
+ Yuri and Braack, Malte and Esmaily, Mahdi and Gravemeier,
+ Volker and L. Marsden, Alison and Pironneau, Olivier and E.
+ Vignon-Clementel, Irene and A. Wall, Wolfgang}
+}
+
+@article{funamoto2013pressure,
+ title={Reproduction of pressure field in ultrasonic-measurement-integrated simulation of blood flow},
+ author={Funamoto, Kenichi and Hayase, Toshiyuki},
+ journal={International journal for numerical methods in biomedical engineering},
+ volume={29},
+ number={7},
+ pages={726--740},
+ year={2013},
+ publisher={Wiley Online Library}
+}
+
+@article{adib2017minimizing,
+ title={Minimizing the blood velocity differences between phase-contrast magnetic resonance imaging and computational fluid dynamics simulation in cerebral arteries and aneurysms},
+ author={Adib, Mohd Azrul Hisham Mohd and Ii, Satoshi and Watanabe, Yoshiyuki and Wada, Shigeo},
+ journal={Medical \& biological engineering \& computing},
+ volume={55},
+ number={9},
+ pages={1605--1619},
+ year={2017},
+ publisher={Springer}
+}
+
+@PhdThesis{ bertoglio_forward_2012,
+ Title = {Forward and {{Inverse Problems}} in {{Fluid}}-{{Structure
+ Interaction}}. {{Application}} to {{Hemodynamics}}},
+ URL = {https://tel.archives-ouvertes.fr/tel-00768188/document},
+ Abstract = {In this thesis we deal with the simulation of
+ fluid-structure interac- tion (FSI) problems in
+ hemodynamics, with the emphasis in data assimilation and
+ simulation in physiological regimes. The first part
+ presents and analyzes a semi-implicit coupling scheme
+ between the three-dimensional Navier-Stokes equations (NSE)
+ and lumped parameter models, when the NSE are solved in a
+ projection framework. This allows to simulate fluid and FSI
+ problems more robustly, i.e., avoiding instabilities that
+ may occur when dealing with realistic test-cases. The
+ second part of the work is devoted to the study of
+ sequential data assimila- tion techniques in FSI. We first
+ present a study about the application of a reduced- order
+ Unscented Kalman Filter for the effective estimation of
+ relevant physical pa- rameters, like the stiffness
+ distribution of the vessel wall and the proximal resistance
+ in the fluid, from displacement measurements at the
+ fluid-structure interface. Next, we analyze some Luenberger
+ observers from solid mechanics in FSI, with the aim to
+ construct tractable state estimators for large-scale FSI
+ problems. In the third and final part, we apply some of the
+ aforementioned methodologies to real physical problems.
+ First, we perform the estimation of the wall stiffness (for
+ linear and non-linear solid models) from data coming from
+ MR-images of a silicone rubber aortic phantom. To finish,
+ we deal with the forward analysis of a real aorta with
+ repaired coarctation and we test the estimation techniques
+ with synthetic data and show some results with the
+ patient's data.},
+ Institution = {{Université Pierre et Marie Curie - Paris VI}},
+ URLDate = {2016-04-01},
+ Date = {2012-11-23},
+ Author = {Bertoglio, Cristobal}
+}
+
+@Article{ bertoglio_fractional-step_2013,
+ Title = {Fractional-Step Schemes for the Coupling of Distributed
+ and Lumped Models in Hemodynamics},
+ Volume = {35},
+ Number = {3},
+ JournalTitle = {SIAM Journal on Scientific Computing},
+ Date = {2013},
+ Pages = {B551-B575},
+ Author = {Bertoglio, Cristóbal and Caiazzo, Alfonso and Fernández,
+ Miguel A},
+ Publisher = {{SIAM}}
+}
+
+@Article{ bertoglio_identification_2014,
+ Title = {Identification of Artery Wall Stiffness: {{In}} Vitro
+ Validation and in Vivo Results of a Data Assimilation
+ Procedure Applied to a {{3D}} Fluid-Structure Interaction
+ Model},
+ Volume = {47},
+ URL = {http://www.sciencedirect.com/science/article/pii/S0021929014000098},
+ ShortTitle = {Identification of Artery Wall Stiffness},
+ Number = {5},
+ JournalTitle = {Journal of biomechanics},
+ URLDate = {2016-11-21},
+ Year = {2014},
+ Pages = {1027--1034},
+ Author = {Bertoglio, Cristobal and Barber, David and Gaddum,
+ Nicholas and Valverde, Israel and Rutten, Marcel and
+ Beerbaum, Philipp and Moireau, Philippe and Hose, Rodney
+ and Gerbeau, Jean-Frederic}
+}
+
+@Article{ bertoglio_relative_2018,
+ Title = {Relative Pressure Estimation from Velocity Measurements in
+ Blood Flows: {{State}}-of-the-Art and New Approaches},
+ ShortTitle = {Relative Pressure Estimation from Velocity Measurements in
+ Blood Flows},
+ Author = {Bertoglio, Crist{\'o}bal and Nu{\~n}ez, Rodolfo and
+ Galarce, Felipe and Nordsletten, David and Osses, Axel},
+ Year = {2018},
+ Month = feb,
+ Volume = {34},
+ Pages = {e2925},
+ ISSN = {20407939},
+ DOI = {10.1002/cnm.2925},
+ Journal = {IJNMBE},
+ Language = {en},
+ Number = {2}
+}
+
+###Article{ bertoglio_relative_2018,
+ langid = {english},
+ Title = {Relative Pressure Estimation from Velocity Measurements in
+ Blood Flows: {{State}}-of-the-Art and New Approaches:
+ {{Relative}} Pressure Estimation},
+ Volume = {34},
+ ISSN = {20407939},
+ URL = {http://doi.wiley.com/10.1002/cnm.2925},
+ DOI = {10.1002/cnm.2925},
+ ShortTitle = {Relative Pressure Estimation from Velocity Measurements in
+ Blood Flows},
+ Number = {2},
+ JournalTitle = {International Journal for Numerical Methods in Biomedical
+ Engineering},
+ URLDate = {2018-12-10},
+ Date = {2018-02},
+ Pages = {e2925},
+ Author = {Bertoglio, Cristóbal and Nuñez, Rodolfo and Galarce,
+ Felipe and Nordsletten, David and Osses, Axel}
+}
+
+###Article{ bertoglio_relative_2018,
+ Title = {Relative pressure estimation from velocity measurements in
+ blood flows: State-of-the-art and new approaches},
+ Author = {Bertoglio, Crist{\'o}bal and N{\'u}nez, Rodolfo and
+ Galarce, Felipe and Nordsletten, David and Osses, Axel},
+ Journal = {International journal for numerical methods in biomedical
+ engineering},
+ Volume = {34},
+ Number = {2},
+ Pages = {e2925},
+ Year = {2018},
+ Publisher = {Wiley Online Library}
+}
+
+@Article{ bertoglio_sequential_2012,
+ Title = {Sequential Parameter Estimation for Fluid-Structure
+ Problems: {{Application}} to Hemodynamics},
+ Volume = {28},
+ ShortTitle = {Sequential Parameter Estimation for FluidâStructure
+ Problems},
+ Number = {4},
+ JournalTitle = {International Journal for Numerical Methods in Biomedical
+ Engineering},
+ Year = {2012},
+ Pages = {434--455},
+ Author = {Bertoglio, Crist\'obal and Moireau, Philippe and Gerbeau,
+ Jean-Frederic}
+}
+
+@Article{ bertoglio_state_2013,
+ Title = {State Observers of a Vascular Fluid-Structure Interaction
+ Model through Measurements in the Solid},
+ Volume = {256},
+ JournalTitle = {Computer Methods in Applied Mechanics and Engineering},
+ Year = {2013},
+ Pages = {149--168},
+ Author = {Bertoglio, Cristobal and Chapelle, Dominique and
+ Fernández, Miguel Angel and Gerbeau, J.-F. and Moireau,
+ Philippe}
+}
+
+@Article{ bertoglio_stokes-residual_2016,
+ Title = {A {{Stokes}}-Residual Backflow Stabilization Method
+ Applied to Physiological Flows},
+ Volume = {313},
+ ISSN = {0021-9991},
+ URL = {http://www.sciencedirect.com/science/article/pii/S0021999116001157},
+ DOI = {10.1016/j.jcp.2016.02.045},
+ Abstract = {In computational fluid dynamics, the presence of incoming
+ flow at open boundaries (backflow) might often yield
+ unphysical oscillations and instabilities issues, even for
+ moderate Reynolds numbers. It is widely accepted that this
+ problem is caused by the incoming convective energy at the
+ open boundary, which cannot be controlled a priori when the
+ velocity at the boundary is unknown. In this work, we
+ propose a stabilized finite element formulation for the
+ incompressible NavierâStokes equations, in which the
+ stabilization term is based on the residual of a weak
+ Stokes problem normal to the open boundary, driven by an
+ approximated boundary pressure gradient. In particular, the
+ viscous term introduces additional dissipation which
+ controls the incoming convective energy. This method has
+ the advantage as it does not require modifications or
+ extensions of the computational domain. Moreover, it does
+ not require a priori assumptions on the shape of the
+ boundary velocity field. We illustrate our approach through
+ several numerical examples relevant to blood and
+ respiratory flows, including Womersley flows and realistic
+ geometries coming from medical imaging. The performance of
+ the simulations is compared to recently reported
+ approaches.},
+ JournalTitle = {Journal of Computational Physics},
+ ShortJournal = {Journal of Computational Physics},
+ URLDate = {2016-11-15},
+ Date = {2016-05-15},
+ Pages = {260-278},
+ Author = {Bertoglio, Cristóbal and Caiazzo, Alfonso}
+}
+
+@Article{ bertoglio_tangential_2014,
+ Title = {A Tangential Regularization Method for Backflow
+ Stabilization in Hemodynamics},
+ Volume = {261},
+ JournalTitle = {Journal of Computational Physics},
+ Date = {2014},
+ Pages = {162-171},
+ Author = {Bertoglio, Cristóbal and Caiazzo, Alfonso},
+ Publisher = {{Academic Press}}
+}
+
+@Book{ berton-91,
+ Annote = {mhd},
+ Author = {Berton, R.},
+ code = {mhd 29},
+ Publisher = {Masson},
+ Title = {Magn{\'e}tohydrodynamique},
+ Year = {1991}
+}
+
+###Book{ berton-91,
+ Annote = {mhd},
+ Author = {Berton, R.},
+ code = {mhd 29},
+ Publisher = {Masson},
+ Title = {Magn{\'e}tohydrodynamique},
+ Year = {1991}
+}
+
+@Article{ besson-bourgeois-chevalier-rappaz-touzani-89,
+ Annote = {mhd, casting},
+ Author = {Bourgeois, J. and Chevalier, P.-A. and Picasso, M. and
+ Rappaz, J. and Touzani, R.},
+ code = {mhd14},
+ Journal = {Jour. Comp. Phys.},
+ Number = {2},
+ Pages = {482-507},
+ Title = {Numerical modelling of electromagnetic casting processes},
+ Volume = {92},
+ Year = {1989}
+}
+
+###Article{ besson-bourgeois-chevalier-rappaz-touzani-89,
+ Annote = {mhd, casting},
+ Author = {Bourgeois, J. and Chevalier, P.-A. and Picasso, M. and
+ Rappaz, J. and Touzani, R.},
+ code = {mhd14},
+ Journal = {Jour. Comp. Phys.},
+ Number = {2},
+ Pages = {482-507},
+ Title = {Numerical modelling of electromagnetic casting processes},
+ Volume = {92},
+ Year = {1989}
+}
+
+@InProceedings{ bestel2001biomechanical,
+ Title = {A biomechanical model of muscle contraction},
+ Author = {Bestel, Julie and Cl{\'e}ment, Fr{\'e}d{\'e}rique and
+ Sorine, Michel},
+ BookTitle = {International Conference on Medical Image Computing and
+ Computer-Assisted Intervention},
+ Pages = {1159--1161},
+ Year = {2001},
+ Organization = {Springer}
+}
+
+@InProceedings{ bestel2001miccai,
+ Title = {A biomechanical model of muscle contraction},
+ Author = {Bestel, Julie and Cl{\'e}ment, Fr{\'e}d{\'e}rique and
+ Sorine, Michel},
+ BookTitle = {Medical Image Computing and Computer-Assisted
+ Intervention--MICCAI 2001},
+ Pages = {1159--1161},
+ Year = {2001},
+ Organization = {Springer}
+}
+
+@Article{ bevan2016comparative,
+ Title = {A comparative study of fractional step method in its
+ quasi-implicit, semi-implicit and fully-explicit forms for
+ incompressible flows},
+ Author = {Bevan, Rhodri LT and Boileau, Etienne and van Loon, Raoul
+ and Lewis, Roland W and Nithiarasu, Perumal and Lewis, RW
+ and Lewis, RW},
+ Journal = {International Journal of Numerical Methods for Heat \&
+ Fluid Flow},
+ Volume = {26},
+ Number = {3/4},
+ Year = {2016},
+ Publisher = {Emerald Group Publishing Limited}
+}
+
+@Article{ bh07,
+ Author = {Burman, E. and Hansbo, P.},
+ Journal = {J. Comput. Appl. Math.},
+ Pages = {35-51},
+ Title = {A unified stabilized method for {S}tokes' and {D}arcy's
+ equations},
+ Volume = {198},
+ Year = { 2007}
+}
+
+###Article{ bh07,
+ Author = {Burman, E. and Hansbo, P.},
+ Journal = {J. Comput. Appl. Math.},
+ Pages = {35-51},
+ Title = {A unified stabilized method for {S}tokes' and {D}arcy's
+ equations},
+ Volume = {198},
+ Year = { 2007}
+}
+
+@Article{ bibriv0,
+ Author = {M.C. Rivara},
+ Journal = { Commn. App. Numer. Methods},
+ Pages = {281--290},
+ Title = {A {3-D Refinement Algorithm Suitable for Adaptive and
+ Multi-Grid Techniques}},
+ Volume = {8},
+ Year = {1992}
+}
+
+###Article{ bibriv0,
+ Author = {M.C. Rivara},
+ Journal = { Commn. App. Numer. Methods},
+ Pages = {281--290},
+ Title = {A {3-D Refinement Algorithm Suitable for Adaptive and
+ Multi-Grid Techniques}},
+ Volume = {8},
+ Year = {1992}
+}
+
+@Article{ biehler2015towards,
+ Title = {Towards efficient uncertainty quantification in complex
+ and large-scale biomechanical problems based on a Bayesian
+ multi-fidelity scheme},
+ Author = {Biehler, Jonas and Gee, Michael W and Wall, Wolfgang A},
+ Journal = {Biomechanics and modeling in mechanobiology},
+ Volume = {14},
+ Number = {3},
+ Pages = {489--513},
+ Year = {2015},
+ Publisher = {Springer}
+}
+
+@InProceedings{ billet-sermesant-delingette-ayache-08,
+ Author = {Billet, F. and Sermesant,M. and Delingette, H. and Ayache,
+ N.},
+ BookTitle = {Proc. of the Workshop on Computational Biomechanics for
+ Medicine III. (Workshop MICCAI-2008)},
+ date-added = {2009-03-10 12:20:33 -0700},
+ date-modified = {2009-03-10 12:22:13 -0700},
+ Editor = {K. Miller and P.M.F. Nielsen},
+ Month = {September},
+ Title = {Cardiac Motion Recovery by Coupling an Electromechanical
+ Model and Cine-{MRI} Data: First Steps},
+ Year = 2008
+}
+
+###InProceedings{ billet-sermesant-delingette-ayache-08,
+ Author = {Billet, F. and Sermesant,M. and Delingette, H. and Ayache,
+ N.},
+ BookTitle = {Proc. of the Workshop on Computational Biomechanics for
+ Medicine III. (Workshop MICCAI-2008)},
+ date-added = {2009-03-10 12:20:33 -0700},
+ date-modified = {2009-03-10 12:22:13 -0700},
+ Editor = {K. Miller and P.M.F. Nielsen},
+ Month = {September},
+ Title = {Cardiac Motion Recovery by Coupling an Electromechanical
+ Model and Cine-{MRI} Data: First Steps},
+ Year = 2008
+}
+
+@InProceedings{ billet2008miccai,
+ Title = {Cardiac Motion Recovery by Coupling an Electromechanical
+ Model and Cine-{MRI} Data: First Steps},
+ Author = {Billet, F. and Sermesant,M. and Delingette, H. and Ayache,
+ N.},
+ BookTitle = {Proc. of the Workshop on Computational Biomechanics for
+ Medicine III. (Workshop MICCAI-2008)},
+ Year = {2008},
+ Editor = {K. Miller and P.M.F. Nielsen},
+ Month = {September},
+ date-added = {2009-03-10 12:20:33 -0700},
+ date-modified = {2009-03-10 12:22:13 -0700},
+ Keywords = {CRT, motion}
+}
+
+@Collection{ bird_dynamics_1987,
+ Location = {{New York}},
+ Title = {Dynamics of Polymeric Liquids},
+ Edition = {2nd ed},
+ ISBN = {978-0-471-80245-7 978-0-471-80244-0},
+ PageTotal = {2},
+ Publisher = {{Wiley}},
+ Year = {1987},
+ Editor = {Bird, R. Byron}
+}
+
+@Article{ birks2006nejm,
+ Title = {Left Ventricular Assist Device and Drug Therapy for the
+ Reversal of Heart Failure},
+ Author = {Birks, Emma J. and Tansley, Patrick D. and Hardy, James
+ and George, Robert S. and Bowles, Christopher T. and Burke,
+ Margaret and Banner, Nicholas R. and Khaghani, Asghar and
+ Yacoub, Magdi H.},
+ Journal = {New England Journal of Medicine},
+ Year = {2006},
+ Note = {PMID: 17079761},
+ Number = {18},
+ Pages = {1873-1884},
+ Volume = {355},
+ DOI = {10.1056/NEJMoa053063},
+ EPrint = {http://dx.doi.org/10.1056/NEJMoa053063},
+ File = {birks06.pdf:birks06.pdf:PDF},
+ timestamp = {2015/09/14},
+ URL = {http://dx.doi.org/10.1056/NEJMoa053063}
+}
+
+@Article{ bishop2010,
+ Author = {Bishop, Martin J. and Plank, Gernot and Burton, Rebecca A.
+ B. and Schneider, Jürgen E. and Gavaghan, David J. and
+ Grau, Vicente and Kohl, Peter},
+ Title = {Development of an anatomically detailed MRI-derived rabbit
+ ventricular model and assessment of its impact on
+ simulations of electrophysiological function},
+ Volume = {298},
+ Number = {2},
+ Pages = {H699-H718},
+ Year = {February 2010},
+ DOI = {10.1152/ajpheart.00606.2009},
+ Journal = {American Journal of Physiology - Heart and Circulatory
+ Physiology}
+}
+
+@Article{ bjorstad-widlund-86,
+ Author = {Bjorstad, P.E. and Widlund, O.B.},
+ Journal = {SIAM J. Numer. Anal.},
+ Number = {23},
+ Pages = {1097--1120},
+ Title = {Iterative methods for the solution of elliptic problems on
+ regions partitioned in subdomains},
+ Volume = {31},
+ Year = {1986}
+}
+
+###Article{ bjorstad-widlund-86,
+ Author = {Bjorstad, P.E. and Widlund, O.B.},
+ Journal = {SIAM J. Numer. Anal.},
+ Number = {23},
+ Pages = {1097--1120},
+ Title = {Iterative methods for the solution of elliptic problems on
+ regions partitioned in subdomains},
+ Volume = {31},
+ Year = {1986}
+}
+
+@Article{ blanc-entner-80,
+ Author = {Blanc, J.M. and Entner, P.},
+ Journal = {AIME},
+ Pages = {285-295},
+ Title = {Application of computer calculations to improve
+ electromagnetic behaviour of pots},
+ Year = {1980}
+}
+
+###Article{ blanc-entner-80,
+ Author = {Blanc, J.M. and Entner, P.},
+ Journal = {AIME},
+ Pages = {285-295},
+ Title = {Application of computer calculations to improve
+ electromagnetic behaviour of pots},
+ Year = {1980}
+}
+
+@Article{ blancher-creff-gagneux-01,
+ Author = {Blancher, S. and Creff, R. and Gagneux, G. and Lacabanne,
+ B. and Montel, F. and Trujillo, D.},
+ code = {por14},
+ Journal = {M2AN Math. Model. Numer. Anal.},
+ Number = {3},
+ Pages = {481--512},
+ Title = {Multicomponent flow in a porous medium. {A}dsorption and
+ soret effect phenomena: local study and upscaling process},
+ Volume = {35},
+ Year = {2001}
+}
+
+###Article{ blancher-creff-gagneux-01,
+ Author = {Blancher, S. and Creff, R. and Gagneux, G. and Lacabanne,
+ B. and Montel, F. and Trujillo, D.},
+ code = {por14},
+ Journal = {M2AN Math. Model. Numer. Anal.},
+ Number = {3},
+ Pages = {481--512},
+ Title = {Multicomponent flow in a porous medium. {A}dsorption and
+ soret effect phenomena: local study and upscaling process},
+ Volume = {35},
+ Year = {2001}
+}
+
+@Article{ bloch1946physrev,
+ Title = {Nuclear Induction},
+ Author = {Bloch, F.},
+ Journal = {Physical Review},
+ Year = {1946},
+ Number = {7-8},
+ Pages = {460--474},
+ Volume = {70},
+ Abstract = {The magnetic moments of nuclei in normal matter will
+ result in a nuclear paramagnetic polarization upon
+ establishment of equilibrium in a constant magnetic field.
+ It is shown that a radiofrequency field at right angles to
+ the constant field causes a forced precession of the total
+ polarization around the constant field with decreasing
+ latitude as the Larmor frequency approaches adiabatically
+ the frequency of the r-f field. Thus there results a
+ component of the nuclear polarization at right angles to
+ both the constant and the r-f field and it is shown that
+ under normal laboratory conditions this component can
+ induce observable voltages. In Section 3 we discuss this
+ nuclear induction, considering the effect of external
+ fields only, while in Section 4 those modifications are
+ described which originate from internal fields and finite
+ relaxation times.},
+ DOI = {10.1103/PhysRev.70.460},
+ owner = {david},
+ timestamp = {2015-05-05 19:49:42},
+ URL = {http://link.aps.org/doi/10.1103/PhysRev.70.460},
+ URLDate = {2015-05-05}
+}
+
+@InCollection{ blum-ledimet-navon-08,
+ Author = {Blum, J. and Le Dimet, F. X. and Navon, I. M.},
+ BookTitle = {Handbook of Numerical Analysis: Computational Methods for
+ the Atmosphere and the Oceans},
+ date-added = {2009-03-10 11:40:58 -0700},
+ date-modified = {2009-03-10 12:02:08 -0700},
+ Editor = {Temam, R. and Tribbia, J.},
+ Publisher = {Elsevier},
+ Title = {Data assimilation for geophysical fluids},
+ Year = {2008}
+}
+
+###InCollection{ blum-ledimet-navon-08,
+ Author = {Blum, J. and Le Dimet, F. X. and Navon, I. M.},
+ BookTitle = {Handbook of Numerical Analysis: Computational Methods for
+ the Atmosphere and the Oceans},
+ date-added = {2009-03-10 11:40:58 -0700},
+ date-modified = {2009-03-10 12:02:08 -0700},
+ Editor = {Temam, R. and Tribbia, J.},
+ Publisher = {Elsevier},
+ Title = {Data assimilation for geophysical fluids},
+ Year = {2008}
+}
+
+@Article{ blum-verron-98,
+ Author = {Luong, Bruno and Blum, Jacques and Verron, Jacques},
+ Title = {A variational method for the resolution of a data
+ assimilation problem in oceanography},
+ Journal = {Inverse Problems},
+ Volume = {14},
+ Year = {1998},
+ Number = {4},
+ Pages = {979--997}
+}
+
+###Article{ blum-verron-98,
+ Author = {Luong, Bruno and Blum, Jacques and Verron, Jacques},
+ Title = {A variational method for the resolution of a data
+ assimilation problem in oceanography},
+ Journal = {Inverse Problems},
+ Volume = {14},
+ Year = {1998},
+ Number = {4},
+ Pages = {979--997}
+}
+
+@Article{ bock_4d_2010,
+ Title = {{{4D}} Phase Contrast {{MRI}} at 3 {{T}}: {{Effect}} of
+ Standard and Blood-Pool Contrast Agents on {{SNR}},
+ {{PC}}-{{MRA}}, and Blood Flow Visualization},
+ ShortTitle = {{{4D}} Phase Contrast {{MRI}} at 3 {{T}}},
+ Author = {Bock, Jelena and Frydrychowicz, Alex and Stalder,
+ Aur{\'e}lien F. and Bley, Thorsten A. and Burkhardt, Hans
+ and Hennig, J{\"u}rgen and Markl, Michael},
+ Year = {2010},
+ Volume = {63},
+ Pages = {330--338},
+ Journal = {Magnetic Resonance in Medicine: An Official Journal of the
+ International Society for Magnetic Resonance in Medicine},
+ Number = {2}
+}
+
+@Article{ bock_vivo_2011,
+ Title = {In Vivo Noninvasive {{4D}} Pressure Difference Mapping in
+ the Human Aorta: {{Phantom}} Comparison and Application in
+ Healthy Volunteers and Patients},
+ ShortTitle = {In Vivo Noninvasive {{4D}} Pressure Difference Mapping in
+ the Human Aorta},
+ Author = {Bock, Jelena and Frydrychowicz, Alex and Lorenz, Ramona
+ and Hirtler, Daniel and Barker, Alex J. and Johnson, Kevin
+ M. and Arnold, Raoul and Burkhardt, Hans and Hennig,
+ Juergen and Markl, Michael},
+ Year = {2011},
+ Volume = {66},
+ Pages = {1079--1088},
+ ISSN = {1522-2594},
+ DOI = {10.1002/mrm.22907},
+ Abstract = {In this work, we present a systematic phantom comparison
+ and clinical application of noninvasive pressure difference
+ mapping in the human aorta based on time-resolved 3D phase
+ contrast data. Relative pressure differences were
+ calculated based on integration and iterative refinement of
+ pressure gradients derived from MR-based three-directional
+ velocity vector fields (flow-sensitive 4D MRI with
+ spatial/temporal resolution {$\sim$} 2.1 mm3/40 ms) using
+ the Navier-Stokes equation. After in vitro study using a
+ stenosis phantom, time-resolved 3D pressure gradients were
+ systematically evaluated in the thoracic aorta in a group
+ of 12 healthy subjects and 6 patients after repair for
+ aortic coarctation. Results from the phantom study showed
+ good agreement with expected values and standard methods
+ (Bernoulli). Data of healthy subjects showed good
+ intersubject consistency and good agreement with the
+ literature. In patients, pressure waveforms showed elevated
+ peak values. Pressure gradients across the stenosis were
+ compared with reference measurements from Doppler
+ ultrasound. The MRI findings demonstrated a significant
+ correlation (r = 0.96, P {$<$} 0.05) but moderate
+ underestimation (14.7\% {$\pm$} 15.5\%) compared with
+ ultrasound when the maximum pressure difference for all
+ possible paths connecting proximal and distal locations of
+ the stenosis were used. This study demonstrates the
+ potential of the applied approach to derive additional
+ quantitative information such as pressure gradients from
+ time-resolved 3D phase contrast MRI. Magn Reson Med, 2011.
+ \textcopyright{} 2011 Wiley-Liss, Inc.},
+ Journal = {Magnetic Resonance in Medicine},
+ Language = {en},
+ Number = {4}
+}
+
+###Article{ bock_vivo_2011,
+ langid = {english},
+ Title = {In Vivo Noninvasive {{4D}} Pressure Difference Mapping in
+ the Human Aorta: {{Phantom}} Comparison and Application in
+ Healthy Volunteers and Patients},
+ Volume = {66},
+ ISSN = {1522-2594},
+ URL = {https://onlinelibrary.wiley.com/doi/abs/10.1002/mrm.22907},
+ DOI = {10.1002/mrm.22907},
+ ShortTitle = {In Vivo Noninvasive {{4D}} Pressure Difference Mapping in
+ the Human Aorta},
+ Abstract = {In this work, we present a systematic phantom comparison
+ and clinical application of noninvasive pressure difference
+ mapping in the human aorta based on time-resolved 3D phase
+ contrast data. Relative pressure differences were
+ calculated based on integration and iterative refinement of
+ pressure gradients derived from MR-based three-directional
+ velocity vector fields (flow-sensitive 4D MRI with
+ spatial/temporal resolution â¼ 2.1 mm3/40 ms) using the
+ Navier-Stokes equation. After in vitro study using a
+ stenosis phantom, time-resolved 3D pressure gradients were
+ systematically evaluated in the thoracic aorta in a group
+ of 12 healthy subjects and 6 patients after repair for
+ aortic coarctation. Results from the phantom study showed
+ good agreement with expected values and standard methods
+ (Bernoulli). Data of healthy subjects showed good
+ intersubject consistency and good agreement with the
+ literature. In patients, pressure waveforms showed elevated
+ peak values. Pressure gradients across the stenosis were
+ compared with reference measurements from Doppler
+ ultrasound. The MRI findings demonstrated a significant
+ correlation (r = 0.96, P {$<$} 0.05) but moderate
+ underestimation (14.7\% ± 15.5\%) compared with ultrasound
+ when the maximum pressure difference for all possible paths
+ connecting proximal and distal locations of the stenosis
+ were used. This study demonstrates the potential of the
+ applied approach to derive additional quantitative
+ information such as pressure gradients from time-resolved
+ 3D phase contrast MRI. Magn Reson Med, 2011. © 2011
+ Wiley-Liss, Inc.},
+ Number = {4},
+ JournalTitle = {Magnetic Resonance in Medicine},
+ URLDate = {2019-01-28},
+ Year = {2011},
+ Pages = {1079-1088},
+ Author = {Bock, Jelena and Frydrychowicz, Alex and Lorenz, Ramona
+ and Hirtler, Daniel and Barker, Alex J. and Johnson, Kevin
+ M. and Arnold, Raoul and Burkhardt, Hans and Hennig,
+ Juergen and Markl, Michael}
+}
+
+@Collection{ bodnar_fluid-structure_2014,
+ langid = {english},
+ Location = {{Basel}},
+ Title = {Fluid-{{Structure Interaction}} and {{Biomedical
+ Applications}}},
+ ISBN = {978-3-0348-0821-7 978-3-0348-0822-4},
+ URL = {http://link.springer.com/10.1007/978-3-0348-0822-4},
+ Series = {Advances in {{Mathematical Fluid Mechanics}}},
+ Publisher = {{Springer Basel}},
+ URLDate = {2019-02-20},
+ Year = {2014},
+ Editor = {Bodnár, Tomáš and Galdi, Giovanni P. and NeÄasová,
+ Šárka},
+ DOI = {10.1007/978-3-0348-0822-4}
+}
+
+@Article{ bolster-mills-hornberger-01,
+ Author = {Bolster, C.H. and Mills, A.L. and Hornberger, G. M. and
+ Herman, J.S.},
+ code = {por17},
+ Journal = {Journal of Contaminant Hydrology},
+ Pages = {287-305},
+ Title = {Effect of surface coatings, grain size, and ionic strength
+ on the maximum attainable coverage of bacteria on sand
+ surfaces},
+ Volume = {50},
+ Year = {2001}
+}
+
+###Article{ bolster-mills-hornberger-01,
+ Author = {Bolster, C.H. and Mills, A.L. and Hornberger, G. M. and
+ Herman, J.S.},
+ code = {por17},
+ Journal = {Journal of Contaminant Hydrology},
+ Pages = {287-305},
+ Title = {Effect of surface coatings, grain size, and ionic strength
+ on the maximum attainable coverage of bacteria on sand
+ surfaces},
+ Volume = {50},
+ Year = {2001}
+}
+
+@InCollection{ bonito2015modified,
+ Title = {Modified pressure-correction projection methods: Open
+ boundary and variable time stepping},
+ Author = {Bonito, Andrea and Guermond, Jean-Luc and Lee, Sanghyun},
+ BookTitle = {Numerical Mathematics and Advanced Applications-ENUMATH
+ 2013},
+ Pages = {623--631},
+ Year = {2015},
+ Publisher = {Springer}
+}
+
+@Article{ borchers-miyakawa-92,
+ Author = {Borchers, W. and Miyakawa, T.},
+ Journal = {Arch. Rat. Mech. Anal},
+ Pages = {273-295},
+ Title = {{L$^2$}-decay for {Navier-Stokes} flows in unbounded
+ domains with application to exterior stationary flows},
+ Volume = {118},
+ Year = {1992}
+}
+
+###Article{ borchers-miyakawa-92,
+ Author = {Borchers, W. and Miyakawa, T.},
+ Journal = {Arch. Rat. Mech. Anal},
+ Pages = {273-295},
+ Title = {{L$^2$}-decay for {Navier-Stokes} flows in unbounded
+ domains with application to exterior stationary flows},
+ Volume = {118},
+ Year = {1992}
+}
+
+@InProceedings{ boretti-89,
+ Author = {Boretti, A.},
+ BookTitle = {Numerical combustion, Lecture notes in physics},
+ Editor = {Dervieux, A. and Larrouturou, B.},
+ Publisher = {Springer-Verlag, Heidelberg},
+ Title = {An explicit {R}unge-{K}utta method for turbulent reactive
+ flow calculations},
+ Volume = {351},
+ Year = {1989}
+}
+
+###InProceedings{ boretti-89,
+ Author = {Boretti, A.},
+ BookTitle = {Numerical combustion, Lecture notes in physics},
+ Editor = {Dervieux, A. and Larrouturou, B.},
+ Publisher = {Springer-Verlag, Heidelberg},
+ Title = {An explicit {R}unge-{K}utta method for turbulent reactive
+ flow calculations},
+ Volume = {351},
+ Year = {1989}
+}
+
+@Article{ borouchaki-frey-97,
+ Author = {Borouchaki, H. and Frey, P.J.},
+ Journal = {Int. J. Numer. Methods Eng.},
+ Pages = {915-934},
+ Title = {Adaptive triangular-quadrilateral mesh generation},
+ Volume = {41},
+ Year = {1997}
+}
+
+###Article{ borouchaki-frey-97,
+ Author = {Borouchaki, H. and Frey, P.J.},
+ Journal = {Int. J. Numer. Methods Eng.},
+ Pages = {915-934},
+ Title = {Adaptive triangular-quadrilateral mesh generation},
+ Volume = {41},
+ Year = {1997}
+}
+
+@Book{ bossavit-93,
+ Author = {Bossavit, A.},
+ Publisher = {Springer-{Verlag}},
+ Title = {Electromagn{\'e}tisme en vue de la mod{\'e}lisation},
+ Year = {1993}
+}
+
+###Book{ bossavit-93,
+ Author = {Bossavit, A.},
+ Publisher = {Springer-{Verlag}},
+ Title = {Electromagn{\'e}tisme en vue de la mod{\'e}lisation},
+ Year = {1993}
+}
+
+@Book{ bossavit-emson-mayergoyz-91,
+ Author = {Bossavit, A. and Emson, C. and Mayergoyz, I.D.},
+ Publisher = {Eyrolles},
+ Title = {M{\'e}thodes num{\'e}riques en {\'e}lectromagn{\'e}tisme},
+ Year = {1991}
+}
+
+###Book{ bossavit-emson-mayergoyz-91,
+ Author = {Bossavit, A. and Emson, C. and Mayergoyz, I.D.},
+ Publisher = {Eyrolles},
+ Title = {M{\'e}thodes num{\'e}riques en {\'e}lectromagn{\'e}tisme},
+ Year = {1991}
+}
+
+@Article{ botker2012cr,
+ Title = {Measuring myocardial salvage.},
+ Author = {B{\o}tker, Hans Erik and Kaltoft, Anne Kjer and Pedersen,
+ Steen Fjord and Kim, Won Yong},
+ Journal = {Cardiovasc Res},
+ Year = {2012},
+ Month = {May},
+ Number = {2},
+ Pages = {266--275},
+ Volume = {94},
+ Abstract = {The efficacy of cardioprotective strategies can be
+ quantified by myocardial salvage as an indicator of
+ therapeutic benefit. Salvage is calculated as the
+ difference between the area at risk (AAR) and the final
+ infarct size (FIS). AAR has been quantified by angiographic
+ assessment followed by quantification of FIS by biochemical
+ ischaemic markers or imaging modalities such as
+ cardiovascular magnetic resonance (CMR). Angiographical
+ methods may overestimate AAR and since methodological
+ differences may exist between different modalities, the use
+ of different modalities for estimating AAR and FIS may not
+ be recommended. (99m)Technetium (Tc)-Sestamibi
+ single-photon emission tomography (SPECT) allows
+ quantification of AAR and FIS by tracer injection prior to
+ revascularization and after 1 month, respectively. SPECT
+ provides the most validated measure of myocardial salvage
+ and has been utilized in multiple randomized clinical
+ trials. However, SPECT is logistically challenging,
+ expensive, and includes radiation exposure. More recently,
+ a large number of studies have suggested that CMR can
+ determine salvage in a single examination by combining
+ measures of myocardial oedema in the AAR exposed to
+ ischaemia reperfusion with FIS quantification by late
+ gadolinium enhancement. The T1- and T2-weighted CMR
+ approaches for quantification of AAR utilize non-contrast,
+ early and late gadolinium enhancement techniques. The
+ technical progress, high spatial resolution and the
+ potential for retrospective quantification of the AAR makes
+ CMR the most appropriate technique for assessment of
+ myocardial salvage. However, the optimum CMR technique for
+ assessment of myocardial AAR remains to be defined.
+ Consequently, we recommend a comprehensive CMR protocol to
+ ensure reliable assessment of myocardial salvage.},
+ DOI = {10.1093/cvr/cvs081},
+ Institution = {Department of Cardiology, Aarhus University Hospital
+ Skejby, Aarhus N, Denmark. heb@dadlnet.dk},
+ Keywords = {Humans; Magnetic Resonance Imaging, methods; Myocardial
+ Infarction, diagnosis/radiography/radionuclide imaging;
+ Myocardium, pathology; Risk Assessment; Technetium,
+ diagnostic use; Tomography, Emission-Computed,
+ Single-Photon, methods},
+ Language = {eng},
+ medline-pst = {ppublish},
+ owner = {stoeckc},
+ pii = {cvs081},
+ pmid = {22311720},
+ timestamp = {2015.07.24},
+ URL = {http://dx.doi.org/10.1093/cvr/cvs081}
+}
+
+@Article{ botnar-rappitsch-00,
+ Author = {Botnar, R. and Rappitsch, G. and Scheidegger, M.B. and
+ Liepsch, D. and Perktold, K. and Boesiger, P.},
+ Journal = {J. Biomechanics},
+ Pages = {137--144},
+ Title = {Hemodynamics in the carotid artery bifurcation: A
+ comparison between numerical simulations and in-vitro
+ measurements},
+ Volume = {33},
+ Year = {2000}
+}
+
+###Article{ botnar-rappitsch-00,
+ Author = {Botnar, R. and Rappitsch, G. and Scheidegger, M.B. and
+ Liepsch, D. and Perktold, K. and Boesiger, P.},
+ Journal = {J. Biomechanics},
+ Pages = {137--144},
+ Title = {Hemodynamics in the carotid artery bifurcation: A
+ comparison between numerical simulations and in-vitro
+ measurements},
+ Volume = {33},
+ Year = {2000}
+}
+
+@Article{ bouaou_analysis_2019,
+ langid = {english},
+ Title = {Analysis of Aortic Pressure Fields from {{4D}} Flow
+ {{MRI}} in Healthy Volunteers: {{Associations}} with Age
+ and Left Ventricular Remodeling: {{4D Flow MRI Aortic
+ Pressure}} in {{Aging}}},
+ ISSN = {10531807},
+ URL = {http://doi.wiley.com/10.1002/jmri.26673},
+ DOI = {10.1002/jmri.26673},
+ ShortTitle = {Analysis of Aortic Pressure Fields from {{4D}} Flow
+ {{MRI}} in Healthy Volunteers},
+ JournalTitle = {Journal of Magnetic Resonance Imaging},
+ URLDate = {2019-02-27},
+ Year = {2019-02-04},
+ Author = {Bouaou, Kevin and Bargiotas, Ioannis and Dietenbeck,
+ Thomas and Bollache, Emilie and Soulat, Gilles and Craiem,
+ Damian and Houriez-Gombaud-Saintonge, Sophia and De Cesare,
+ Alain and Gencer, Umit and Giron, Alain and Redheuil, Alban
+ and Messas, Emmanuel and Lucor, Didier and Mousseaux, Elie
+ and Kachenoura, Nadjia}
+}
+
+@Article{ boulakia-05,
+ Author = {Boulakia, M.},
+ date-added = {2012-02-27 09:44:22 +0000},
+ date-modified = {2012-02-27 09:44:34 +0000},
+ Journal = {Journal de Math{\'e}matiques Pures et Appliqu\'es},
+ Number = {11},
+ Pages = {1515--1554},
+ Title = {Existence of weak solutions for an interaction problem
+ between an elastic structure and a compressible viscous
+ fluid},
+ Volume = {84},
+ Year = {2005}
+}
+
+###Article{ boulakia-05,
+ Author = {Boulakia, M.},
+ date-added = {2012-02-27 09:44:22 +0000},
+ date-modified = {2012-02-27 09:44:34 +0000},
+ Journal = {Journal de Math{\'e}matiques Pures et Appliqu\'es},
+ Number = {11},
+ Pages = {1515--1554},
+ Title = {Existence of weak solutions for an interaction problem
+ between an elastic structure and a compressible viscous
+ fluid},
+ Volume = {84},
+ Year = {2005}
+}
+
+@InCollection{ bourgeois-chevalier-picasso-rappaz-touzani-92,
+ Annote = {mhd, casting},
+ Author = {Bourgeois, J. and Chevalier, P.-A. and Picasso, M. and
+ Rappaz, J. and Touzani, R.},
+ BookTitle = {Finite Element in Fluids},
+ Chapter = {19},
+ code = {mhd13},
+ Editor = {T.J. Chung},
+ Pages = {479-507},
+ Publisher = {Hemisphere Publishing Corporation},
+ Series = {Series in Computational and physical processes in
+ mechanics and thermal sciences},
+ Title = {Magnetohydrodynamic problem in the aluminium industry},
+ Volume = {8},
+ Year = {1992}
+}
+
+###InCollection{ bourgeois-chevalier-picasso-rappaz-touzani-92,
+ Annote = {mhd, casting},
+ Author = {Bourgeois, J. and Chevalier, P.-A. and Picasso, M. and
+ Rappaz, J. and Touzani, R.},
+ BookTitle = {Finite Element in Fluids},
+ Chapter = {19},
+ code = {mhd13},
+ Editor = {T.J. Chung},
+ Pages = {479-507},
+ Publisher = {Hemisphere Publishing Corporation},
+ Series = {Series in Computational and physical processes in
+ mechanics and thermal sciences},
+ Title = {Magnetohydrodynamic problem in the aluminium industry},
+ Volume = {8},
+ Year = {1992}
+}
+
+@Article{ bovendeerd2012jbiomech,
+ Title = {Modeling of cardiac growth and remodeling of myofiber
+ orientation },
+ Author = {Peter H.M. Bovendeerd},
+ Journal = {Journal of Biomechanics },
+ Year = {2012},
+ Note = {Special Issue on Cardiovascular Solid Mechanics },
+ Number = {5},
+ Pages = {872 - 881},
+ Volume = {45},
+ Abstract = {The heart has the ability to respond to long-term changes
+ in its environment through changes in mass (growth), shape
+ (morphogenesis) and tissue properties (remodeling). For
+ improved quantitative understanding of cardiac growth and
+ remodeling (G&R) experimental studies need to be
+ complemented by mathematical models. This paper reviews
+ models for cardiac growth and remodeling of myofiber
+ orientation, as induced by mechanical stimuli. A
+ distinction is made between optimization models, that focus
+ on the end stage of G&R, and adaptation models, that
+ aim to more closely describe the mechanistic relation
+ between stimulus and effect. While many models demonstrate
+ qualitatively promising results, a lot of questions remain,
+ e.g. with respect to the choice of the stimulus for G&R
+ or the long-term stability of the outcome of the model. A
+ continued effort combining information on
+ mechanotransduction at the cellular level, experimental
+ observations on G&R at organ level, and testing of
+ hypotheses on stimulus?effect relations in mathematical
+ models is needed to answer these questions on cardiac
+ G&R. Ultimately, models of cardiac G&R seem
+ indispensable for patient-specific modeling, both to
+ reconstruct the actual state of the heart and to assess the
+ long-term effect of potential interventions. },
+ DOI = {http://dx.doi.org/10.1016/j.jbiomech.2011.11.029},
+ File = {bovendeerd12.pdf:bovendeerd12.pdf:PDF},
+ ISSN = {0021-9290},
+ Keywords = {Adaptation},
+ timestamp = {2015/09/22},
+ URL = {http://www.sciencedirect.com/science/article/pii/S0021929011007111}
+}
+
+@Article{ bozzi_uncertainty_2017,
+ Title = {Uncertainty Propagation of Phase Contrast-{{MRI}} Derived
+ Inlet Boundary Conditions in Computational Hemodynamics
+ Models of Thoracic Aorta},
+ Volume = {20},
+ ISSN = {1025-5842},
+ URL = {https://doi.org/10.1080/10255842.2017.1334770},
+ DOI = {10.1080/10255842.2017.1334770},
+ Abstract = {This study investigates the impact that uncertainty in
+ phase contrast-MRI derived inlet boundary conditions has on
+ patient-specific computational hemodynamics models of the
+ healthy human thoracic aorta. By means of Monte Carlo
+ simulations, we provide advice on where, when and how, it
+ is important to account for this source of uncertainty. The
+ study shows that the uncertainty propagates not only to the
+ intravascular flow, but also to the shear stress
+ distribution at the vessel wall. More specifically, the
+ results show an increase in the uncertainty of the
+ predicted output variables, with respect to the input
+ uncertainty, more marked for blood pressure and wall shear
+ stress. The methodological approach proposed here can be
+ easily extended to study uncertainty propagation in both
+ healthy and pathological computational hemodynamic
+ models.},
+ Number = {10},
+ JournalTitle = {Computer Methods in Biomechanics and Biomedical
+ Engineering},
+ URLDate = {2019-02-20},
+ Year = {2017-07-27},
+ Pages = {1104-1112},
+ Author = {Bozzi, Silvia and Morbiducci, Umberto and Gallo, Diego and
+ Ponzini, Raffaele and Rizzo, Giovanna and Bignardi,
+ Cristina and Passoni, Giuseppe},
+ EPrintType = {pmid},
+ EPrint = {28553722}
+}
+
+@Article{ brackbill-76,
+ Author = {Brackbill, J.U.},
+ code = {mhd44},
+ Journal = {Methods in Computational Physics},
+ Pages = {1-41},
+ Title = {Numerical magnetohydrodynamics for high-beta plasmas},
+ Volume = {16},
+ Year = {1976}
+}
+
+###Article{ brackbill-76,
+ Author = {Brackbill, J.U.},
+ code = {mhd44},
+ Journal = {Methods in Computational Physics},
+ Pages = {1-41},
+ Title = {Numerical magnetohydrodynamics for high-beta plasmas},
+ Volume = {16},
+ Year = {1976}
+}
+
+@Article{ brackbill-pracht-73,
+ Author = {Brackbill, J.U. and Pracht, W.E.},
+ code = {mhd43},
+ Journal = {J. Comp. Phys.},
+ Pages = {455-482},
+ Title = {An Implicit, Almost-Lagrangian Algorithm for
+ Magnetohydrodynamics},
+ Volume = {13},
+ Year = {1973}
+}
+
+###Article{ brackbill-pracht-73,
+ Author = {Brackbill, J.U. and Pracht, W.E.},
+ code = {mhd43},
+ Journal = {J. Comp. Phys.},
+ Pages = {455-482},
+ Title = {An Implicit, Almost-Lagrangian Algorithm for
+ Magnetohydrodynamics},
+ Volume = {13},
+ Year = {1973}
+}
+
+@Article{ brady-morris-97,
+ Author = {Brady, J. F and Morris, J-F.},
+ code = {cel18},
+ Journal = {J. Fluid Mech.},
+ Pages = {103--139},
+ Title = {Microstructure of strongly sheared suspensions and its
+ impact on rheology and diffusion},
+ Volume = {348},
+ Year = {1997}
+}
+
+###Article{ brady-morris-97,
+ Author = {Brady, J. F and Morris, J-F.},
+ code = {cel18},
+ Journal = {J. Fluid Mech.},
+ Pages = {103--139},
+ Title = {Microstructure of strongly sheared suspensions and its
+ impact on rheology and diffusion},
+ Volume = {348},
+ Year = {1997}
+}
+
+@Article{ braess-wriggers-00,
+ Author = {Braess, H. and Wriggers, P.},
+ code = {mob10},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Number = 190,
+ Pages = {95-109},
+ Title = {Arbitrary {L}agrangian {E}ulerian finite element analysis
+ of free surface flow},
+ Volume = 2000,
+ Year = 2000
+}
+
+###Article{ braess-wriggers-00,
+ Author = {Braess, H. and Wriggers, P.},
+ code = {mob10},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Number = 190,
+ Pages = {95-109},
+ Title = {Arbitrary {L}agrangian {E}ulerian finite element analysis
+ of free surface flow},
+ Volume = 2000,
+ Year = 2000
+}
+
+@Article{ bramwell-hill-22,
+ Author = {Bramwell, J.C. and Hill, A.V.},
+ Title = {The Velocity of the Pulse Wave in Man},
+ Volume = {93},
+ Number = {652},
+ Pages = {298-306},
+ Year = {1922},
+ DOI = {10.1098/rspb.1922.0022},
+ Journal = {Proceedings of the Royal Society of London. Series B,
+ Containing Papers of a Biological Character}
+}
+
+###Article{ bramwell-hill-22,
+ Author = {Bramwell, J.C. and Hill, A.V.},
+ Title = {The Velocity of the Pulse Wave in Man},
+ Volume = {93},
+ Number = {652},
+ Pages = {298-306},
+ Year = {1922},
+ DOI = {10.1098/rspb.1922.0022},
+ URL = {http://rspb.royalsocietypublishing.org/content/93/652/298.short},
+ EPrint = {http://rspb.royalsocietypublishing.org/content/93/652/298.full.pdf+html},
+ Journal = {Proceedings of the Royal Society of London. Series B,
+ Containing Papers of a Biological Character}
+}
+
+@Article{ branch1999subspace,
+ Author = {Branch, Mary Ann and Thomas F. Coleman and Li, Yuying},
+ Title = {A Subspace, Interior, and Conjugate Gradient Method for
+ Large-Scale Bound-Constrained Minimization Problems},
+ Journal = {SIAM Journal on Scientific Computing},
+ Year = {1999},
+ Volume = {21},
+ Pages = {1-23},
+ Abstract = {A subspace adaptation of the Coleman-Li trust region and
+ interior method is proposed for solving large-scale
+ bound-constrained minimization problems. This method can be
+ implemented with either sparse Cholesky factorization or
+ conjugate gradient computation. Under reasonable conditions
+ the convergence properties of this subspace trust region
+ method are as strong as those of its full-space version.
+ Computational},
+ timestamp = {2015.06.02}
+}
+
+@Article{ brenier-99,
+ Author = {Brenier, Y.},
+ Journal = {Nonlinearity},
+ Number = {3},
+ Pages = {495--512},
+ Title = {Homogeneous hydrostatic flows with convex velocity
+ profiles},
+ Volume = {12},
+ Year = {1999}
+}
+
+###Article{ brenier-99,
+ Author = {Brenier, Y.},
+ Journal = {Nonlinearity},
+ Number = {3},
+ Pages = {495--512},
+ Title = {Homogeneous hydrostatic flows with convex velocity
+ profiles},
+ Volume = {12},
+ Year = {1999}
+}
+
+@Article{ brenner-99,
+ Author = {Brenner, S.},
+ Journal = {Numerische Mathematik},
+ Number = {2},
+ Pages = {187--203},
+ Title = {The condition number of the Schur complement in domain
+ decomposition},
+ Volume = {83},
+ Year = {1999}
+}
+
+###Article{ brenner-99,
+ Author = {Brenner, S.},
+ Journal = {Numerische Mathematik},
+ Number = {2},
+ Pages = {187--203},
+ Title = {The condition number of the Schur complement in domain
+ decomposition},
+ Volume = {83},
+ Year = {1999}
+}
+
+@Book{ brenner-scott-02,
+ Title = {{The mathematical theory of finite element methods}},
+ Author = {Brenner, S.~C. and Scott, L.~R.},
+ Year = {2002},
+ Publisher = {Springer Verlag}
+}
+
+###Book{ brenner-scott-02,
+ Title = {{The mathematical theory of finite element methods}},
+ Author = {Brenner, S.~C. and Scott, L.~R.},
+ Year = {2002},
+ Publisher = {Springer Verlag}
+}
+
+@Book{ brezis-83,
+ Author = {Brezis, H.},
+ Publisher = {Masson},
+ Title = {Analyse fonctionnelle, Th{\'e}orie et applications},
+ Year = {1983}
+}
+
+###Book{ brezis-83,
+ Author = {Brezis, H.},
+ Publisher = {Masson},
+ Title = {Analyse fonctionnelle, Th{\'e}orie et applications},
+ Year = {1983}
+}
+
+@Article{ brezzi-bristeau-franca-mallet-92,
+ Author = {Brezzi, F. and Bristeau, M.O. and Franca, L.P. and Mallet,
+ M. and Rog{\'e}, G.},
+ Journal = {Comp. Meth App. Mech. Eng.},
+ Pages = {117-129},
+ Title = {A relationship between stabilized finite element method
+ and the Galerkin method with bubble functions},
+ Volume = {96},
+ Year = {1992}
+}
+
+###Article{ brezzi-bristeau-franca-mallet-92,
+ Author = {Brezzi, F. and Bristeau, M.O. and Franca, L.P. and Mallet,
+ M. and Rog{\'e}, G.},
+ Journal = {Comp. Meth App. Mech. Eng.},
+ Pages = {117-129},
+ Title = {A relationship between stabilized finite element method
+ and the Galerkin method with bubble functions},
+ Volume = {96},
+ Year = {1992}
+}
+
+@InProceedings{ brezzi-marini-russo-96,
+ Author = {Brezzi, F. and Marini, D. and Russo, A.},
+ BookTitle = {Computational method in Applied sciences},
+ Organization = {ECCOMAS},
+ Publisher = {Wiley},
+ Title = {Pseudo residual-free bubbles and stabilized methods},
+ Year = {1996}
+}
+
+###InProceedings{ brezzi-marini-russo-96,
+ Author = {Brezzi, F. and Marini, D. and Russo, A.},
+ BookTitle = {Computational method in Applied sciences},
+ Organization = {ECCOMAS},
+ Publisher = {Wiley},
+ Title = {Pseudo residual-free bubbles and stabilized methods},
+ Year = {1996}
+}
+
+@InCollection{ brezzi-pitkaranta-84,
+ Author = {Brezzi, F. and Pitk{\"a}ranta, J.},
+ Title = {On the stabilization of finite element approximations of
+ the {S}tokes equations},
+ BookTitle = {Efficient solutions of elliptic systems (Kiel, 1984)},
+ Series = {Notes Numer. Fluid Mech.},
+ Volume = {10},
+ Pages = {11--19},
+ Publisher = {Vieweg},
+ Year = {1984}
+}
+
+###InCollection{ brezzi-pitkaranta-84,
+ Author = {Brezzi, F. and Pitk{\"a}ranta, J.},
+ Title = {On the stabilization of finite element approximations of
+ the {S}tokes equations},
+ BookTitle = {Efficient solutions of elliptic systems (Kiel, 1984)},
+ Series = {Notes Numer. Fluid Mech.},
+ Volume = {10},
+ Pages = {11--19},
+ Publisher = {Vieweg},
+ Year = {1984}
+}
+
+@Article{ brezzi-russo-94,
+ Author = {Brezzi, F. and Russo, A.},
+ Journal = {Math. Mod. Meth. Appl. Sci.},
+ Pages = {571-587},
+ Title = {Choosing bubbles for advection-diffusion problems},
+ Volume = {4},
+ Year = {1994}
+}
+
+###Article{ brezzi-russo-94,
+ Author = {Brezzi, F. and Russo, A.},
+ Journal = {Math. Mod. Meth. Appl. Sci.},
+ Pages = {571-587},
+ Title = {Choosing bubbles for advection-diffusion problems},
+ Volume = {4},
+ Year = {1994}
+}
+
+@Article{ brezzi1985two,
+ Title = {Two families of mixed finite elements for second order
+ elliptic problems},
+ Author = {Brezzi, Franco and Douglas Jr, Jim and Marini, L
+ Donatella},
+ Journal = {Numerische Mathematik},
+ Volume = {47},
+ Number = {2},
+ Pages = {217--235},
+ Year = {1985},
+ Publisher = {Springer}
+}
+
+@PhdThesis{ briane-90,
+ Author = {Briane, M.},
+ Note = {th{\`e}se},
+ School = {Universit{\'e} Paris VI},
+ Title = {Homog{\'e}n{\'e}isation de mat{\'e}riaux fibr{\'e}s et
+ multi-couches},
+ Year = {1990}
+}
+
+###PhdThesis{ briane-90,
+ Author = {Briane, M.},
+ Note = {th{\`e}se},
+ School = {Universit{\'e} Paris VI},
+ Title = {Homog{\'e}n{\'e}isation de mat{\'e}riaux fibr{\'e}s et
+ multi-couches},
+ Year = {1990}
+}
+
+@Article{ briane-93,
+ Author = {Briane, M.},
+ fjournal = {RAIRO Mod{\'e}lisation Math{\'e}matique et Analyse
+ Num{\'e}rique},
+ Journal = {RAIRO Mod{\'e}l. Math. Anal. Num{\'e}r.},
+ Number = {6},
+ Pages = {759--775},
+ Title = {Three models of nonperiodic fibrous materials obtained by
+ homogenization},
+ Volume = {27},
+ Year = {1993}
+}
+
+###Article{ briane-93,
+ Author = {Briane, M.},
+ fjournal = {RAIRO Mod{\'e}lisation Math{\'e}matique et Analyse
+ Num{\'e}rique},
+ Journal = {RAIRO Mod{\'e}l. Math. Anal. Num{\'e}r.},
+ Number = {6},
+ Pages = {759--775},
+ Title = {Three models of nonperiodic fibrous materials obtained by
+ homogenization},
+ Volume = {27},
+ Year = {1993}
+}
+
+@Article{ briane-94,
+ Author = {Briane, M.},
+ fjournal = {Journal de Math{\'e}matiques Pures et Appliqu{\'e}es.
+ Neuvi{\`e}me S{\'e}rie},
+ Journal = {J. Math. Pures Appl. (9)},
+ Number = {1},
+ Pages = {47--66},
+ Title = {Homogenization of a nonperiodic material},
+ Volume = {73},
+ Year = {1994}
+}
+
+###Article{ briane-94,
+ Author = {Briane, M.},
+ fjournal = {Journal de Math{\'e}matiques Pures et Appliqu{\'e}es.
+ Neuvi{\`e}me S{\'e}rie},
+ Journal = {J. Math. Pures Appl. (9)},
+ Number = {1},
+ Pages = {47--66},
+ Title = {Homogenization of a nonperiodic material},
+ Volume = {73},
+ Year = {1994}
+}
+
+@Article{ brooks-hughes-82,
+ Author = {Brooks, A.N. and Hughes, T.J.R.},
+ Journal = {Comp. Meth. App. Mech. Eng.},
+ Pages = {199-259},
+ Title = {Streamline upwind/{Petrov-Galerkin} formulations for
+ convection dominated flows with particular emphasis on the
+ incompressible {Navier-Stokes} equations},
+ Volume = {32},
+ Year = {1982}
+}
+
+###Article{ brooks-hughes-82,
+ Author = {Brooks, A.N. and Hughes, T.J.R.},
+ Journal = {Comp. Meth. App. Mech. Eng.},
+ Pages = {199-259},
+ Title = {Streamline upwind/{Petrov-Galerkin} formulations for
+ convection dominated flows with particular emphasis on the
+ incompressible {Navier-Stokes} equations},
+ Volume = {32},
+ Year = {1982}
+}
+
+@Article{ brooks1982streamline,
+ Title = {Streamline upwind/{P}etrov-{G}alerkin formulations for
+ convection dominated flows with particular emphasis on the
+ incompressible {N}avier-{S}tokes equations},
+ Author = {Brooks, Alexander N and Hughes, Thomas JR},
+ Journal = {Computer methods in applied mechanics and engineering},
+ Volume = {32},
+ Number = {1},
+ Pages = {199--259},
+ Year = {1982},
+ Publisher = {Elsevier}
+}
+
+###Article{ brooks1982streamline,
+ Title = {Streamline upwind/{P}etrov-{G}alerkin formulations for
+ convection dominated flows with particular emphasis on the
+ incompressible {N}avier-{S}tokes equations},
+ Author = {Brooks, Alexander N and Hughes, Thomas JR},
+ Journal = {Computer methods in applied mechanics and engineering},
+ Volume = {32},
+ Number = {1},
+ Pages = {199--259},
+ Year = {1982},
+ Publisher = {Elsevier}
+}
+
+@Article{ brown-saad-94,
+ Author = {Brown, P. N. and Saad, Y.},
+ fjournal = {SIAM Journal on Optimization},
+ Journal = {SIAM J. Optim.},
+ Number = {2},
+ Pages = {297--330},
+ Title = {Convergence theory of nonlinear {N}ewton-{K}rylov
+ algorithms},
+ Volume = {4},
+ Year = {1994}
+}
+
+###Article{ brown-saad-94,
+ Author = {Brown, P. N. and Saad, Y.},
+ fjournal = {SIAM Journal on Optimization},
+ Journal = {SIAM J. Optim.},
+ Number = {2},
+ Pages = {297--330},
+ Title = {Convergence theory of nonlinear {N}ewton-{K}rylov
+ algorithms},
+ Volume = {4},
+ Year = {1994}
+}
+
+@Book{ brown_magnetic_2014,
+ Location = {{Hoboken, New Jersey}},
+ Title = {Magnetic {{Resonance Imaging}}: {{Physical Principles}}
+ and {{Sequence Design}}},
+ Edition = {Second edition},
+ ISBN = {978-0-471-72085-0},
+ ShortTitle = {Magnetic Resonance Imaging},
+ PageTotal = {944},
+ Publisher = {{John Wiley \& Sons, Inc}},
+ Year = {2014},
+ Author = {Brown, Robert W. and Cheng, Yu-Chung N. and Haacke, E.
+ Mark and Thompson, Michael R. and Venkatesan, Ramesh}
+}
+
+@Article{ bruil-beugeling-feijen-van-aken-95,
+ Annote = {blood, filtration, porous},
+ Author = {Bruil, A. and Beugeling, T and Feijen, J. and van Aken, W.
+ G.},
+ code = {cel17},
+ Journal = {Transfusion Medicine Reviews},
+ Number = {2},
+ Pages = {145-166},
+ Title = {The mechanisms of leukocyte removal by filtration},
+ Volume = {9},
+ Year = {1995}
+}
+
+###Article{ bruil-beugeling-feijen-van-aken-95,
+ Annote = {blood, filtration, porous},
+ Author = {Bruil, A. and Beugeling, T and Feijen, J. and van Aken, W.
+ G.},
+ code = {cel17},
+ Journal = {Transfusion Medicine Reviews},
+ Number = {2},
+ Pages = {145-166},
+ Title = {The mechanisms of leukocyte removal by filtration},
+ Volume = {9},
+ Year = {1995}
+}
+
+@Article{ buenoorovio2008jtb,
+ Title = "Minimal model for human ventricular action potentials in
+ tissue ",
+ Journal = "Journal of Theoretical Biology ",
+ Volume = "253",
+ Number = "3",
+ Pages = "544 - 560",
+ Year = "2008",
+ Note = "",
+ ISSN = "0022-5193",
+ DOI = "http://dx.doi.org/10.1016/j.jtbi.2008.03.029",
+ URL = "http://www.sciencedirect.com/science/article/pii/S0022519308001690",
+ Author = "Alfonso Bueno-Orovio and Elizabeth M. Cherry and Flavio H.
+ Fenton",
+ Keywords = "Reentrant arrhythmias "
+}
+
+@PhdThesis{ buffard-93,
+ Author = {T. Buffard},
+ Month = {d{\'e}cembre},
+ School = {universit{\'e} de Paris VI},
+ Title = {Analyse de quelques m{\'e}thodes de Volumes Finis non
+ structur{\'e}s pour la r{\'e}solution des {\'e}quations
+ d'Euler},
+ Year = {1993}
+}
+
+###PhdThesis{ buffard-93,
+ Author = {T. Buffard},
+ Month = {d{\'e}cembre},
+ School = {universit{\'e} de Paris VI},
+ Title = {Analyse de quelques m{\'e}thodes de Volumes Finis non
+ structur{\'e}s pour la r{\'e}solution des {\'e}quations
+ d'Euler},
+ Year = {1993}
+}
+
+@Article{ bull2013h,
+ Title = {Human non-contrast T1 values and correlation with
+ histology in diffuse fibrosis.},
+ Author = {Bull, Sacha and White, Steven K. and Piechnik, Stefan K.
+ and Flett, Andrew S. and Ferreira, Vanessa M. and Loudon,
+ Margaret and Francis, Jane M. and Karamitsos, Theodoros D.
+ and Prendergast, Bernard D. and Robson, Matthew D. and
+ Neubauer, Stefan and Moon, James C. and Myerson, Saul G.},
+ Journal = {Heart},
+ Year = {2013},
+ Month = {Jul},
+ Number = {13},
+ Pages = {932--937},
+ Volume = {99},
+ Abstract = {Aortic stenosis (AS) leads to diffuse fibrosis in the
+ myocardium, which is linked to adverse outcome. Myocardial
+ T1 values change with tissue composition.To test the
+ hypothesis that our recently developed non-contrast cardiac
+ magnetic resonance (CMR) T1 mapping sequence could identify
+ myocardial fibrosis without contrast agent.A prospective
+ CMR non-contrast T1 mapping study of 109 patients with
+ moderate and severe AS and 33 age- and gender-matched
+ controls.CMR at 1.5 T, including non-contrast T1 mapping
+ using a shortened modified Look-Locker inversion recovery
+ sequence, was carried out. Biopsy samples for histological
+ assessment of collagen volume fraction (CVF\%) were
+ obtained in 19 patients undergoing aortic valve
+ replacement.There was a significant correlation between T1
+ values and CVF\% (r=0.65, p=0.002). Mean T1 values were
+ significantly longer in all groups with severe AS (972 ±
+ 33 ms in severe asymptomatic, 1014 ± 38 ms in severe
+ symptomatic) than in normal controls (944 ± 16 ms)
+ (p<0.05). The strongest associations with T1 values were
+ for aortic valve area (r=-0.40, p=0.001) and left
+ ventricular mass index (LVMI) (r=0.36, p=0.008), and these
+ were the only independent predictors on multivariate
+ analysis.Non-contrast T1 values are increased in patients
+ with severe AS and further increase in symptomatic compared
+ with asymptomatic patients. T1 values lengthened with
+ greater LVMI and correlated with the degree of
+ biopsy-quantified fibrosis. This may provide a useful
+ clinical assessment of diffuse myocardial fibrosis in the
+ future.},
+ DOI = {10.1136/heartjnl-2012-303052},
+ Institution = {Department of Cardiovascular Medicine, University of
+ Oxford Centre for Clinical Magnetic Resonance Research,
+ John Radcliffe Hospital, Level 0, Headley Way, Oxford OX3
+ 9DU, UK.},
+ Keywords = {Aged; Aged, 80 and over; Aortic Valve Stenosis,
+ diagnosis/metabolism/pathology; Aortic Valve,
+ chemistry/pathology; Asymptomatic Diseases; Biological
+ Markers, analysis; Biopsy; Case-Control Studies; Chi-Square
+ Distribution; Collagen, analysis; England; Female;
+ Fibrosis; Heart Ventricles, chemistry/pathology; Humans;
+ Magnetic Resonance Imaging; Male; Middle Aged; Multivariate
+ Analysis; Myocardium, chemistry/pathology; Predictive Value
+ of Tests; Prospective Studies; Severity of Illness Index},
+ Language = {eng},
+ medline-pst = {ppublish},
+ owner = {stoeckc},
+ pii = {heartjnl-2012-303052},
+ pmid = {23349348},
+ timestamp = {2015.07.24},
+ URL = {http://dx.doi.org/10.1136/heartjnl-2012-303052}
+}
+
+@Article{ burchfield2013circ,
+ Title = {Pathological Ventricular Remodeling: Mechanisms: Part 1 of
+ 2},
+ Author = {Burchfield, Jana S. and Xie, Min and Hill, Joseph A.},
+ Journal = {Circulation},
+ Year = {2013},
+ Number = {4},
+ Pages = {388-400},
+ Volume = {128},
+ Abstract = {Despite declines in heart failure morbidity and mortality
+ with current therapies, rehospitalization rates remain
+ distressingly high, substantially affecting individuals,
+ society, and the economy. As a result, the need for new
+ therapeutic advances and novel medical devices is urgent.
+ Disease-related left ventricular remodeling is a complex
+ process involving cardiac myocyte growth and death,
+ vascular rarefaction, fibrosis, inflammation, and
+ electrophysiological remodeling. Because these events are
+ highly interrelated, targeting a single molecule or process
+ may not be sufficient. Here, we review molecular and
+ cellular mechanisms governing pathological ventricular
+ remodeling.},
+ DOI = {10.1161/CIRCULATIONAHA.113.001878},
+ EPrint = {http://circ.ahajournals.org/content/128/4/388.full.pdf+html},
+ File = {burchfield13.pdf:burchfield13.pdf:PDF},
+ timestamp = {2015/09/20},
+ URL = {http://circ.ahajournals.org/content/128/4/388.abstract}
+}
+
+@Article{ burman-fernandez-07,
+ Author = {Burman, E. and Fern{\'a}ndez, M.A.},
+ Journal = {C. R. Math. Acad. Sci. Paris},
+ Number = {8},
+ Pages = {467--472},
+ Title = {Stabilized explicit coupling for fluid-structure
+ interaction using {N}itsche's method},
+ Volume = {345},
+ Year = {2007}
+}
+
+###Article{ burman-fernandez-07,
+ Author = {Burman, E. and Fern{\'a}ndez, M.A.},
+ Journal = {C. R. Math. Acad. Sci. Paris},
+ Number = {8},
+ Pages = {467--472},
+ Title = {Stabilized explicit coupling for fluid-structure
+ interaction using {N}itsche's method},
+ Volume = {345},
+ Year = {2007}
+}
+
+@Article{ burman-fernandez-09,
+ Author = {Burman, E. and Fern\'andez, M.A.},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Number = {5--8},
+ Pages = {766--784},
+ Title = {Stabilization of explicit coupling in fluid-structure
+ interaction involving fluid incompressibility},
+ Volume = {198},
+ Year = {2009}
+}
+
+###Article{ burman-fernandez-09,
+ Author = {Burman, E. and Fern\'andez, M.A.},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Number = {5--8},
+ Pages = {766--784},
+ Title = {Stabilization of explicit coupling in fluid-structure
+ interaction involving fluid incompressibility},
+ Volume = {198},
+ Year = {2009}
+}
+
+@Unpublished{ burman-fernandez-xx,
+ Author = {Burman, E. and Fern\'andez, M.A.},
+ Note = {In preparation},
+ Title = {On the {N}itsche implicit/explicit coupling of
+ parabolic-hyperbolic systems}
+}
+
+###Unpublished{ burman-fernandez-xx,
+ Author = {Burman, E. and Fern\'andez, M.A.},
+ Note = {In preparation},
+ Title = {On the {N}itsche implicit/explicit coupling of
+ parabolic-hyperbolic systems}
+}
+
+@Article{ burmanhansbo07,
+ Author = {Burman, Erik and Hansbo, Peter},
+ Title = {A unified stabilized method for {S}tokes' and {D}arcy's
+ equations},
+ Journal = {J. Comput. Appl. Math.},
+ fjournal = {Journal of Computational and Applied Mathematics},
+ Volume = {198},
+ Year = {2007},
+ Number = {1},
+ Pages = {35--51},
+ ISSN = {0377-0427},
+ coden = {JCAMDI},
+ mrclass = {65M60 (35Q35 76M10 76S05)},
+ mrnumber = {MR2250387 (2007i:65076)},
+ mrreviewer = {Michael Fr{\"o}hner},
+ DOI = {10.1016/j.cam.2005.11.022}
+}
+
+###Article{ burmanhansbo07,
+ Author = {Burman, Erik and Hansbo, Peter},
+ Title = {A unified stabilized method for {S}tokes' and {D}arcy's
+ equations},
+ Journal = {J. Comput. Appl. Math.},
+ fjournal = {Journal of Computational and Applied Mathematics},
+ Volume = {198},
+ Year = {2007},
+ Number = {1},
+ Pages = {35--51},
+ ISSN = {0377-0427},
+ coden = {JCAMDI},
+ mrclass = {65M60 (35Q35 76M10 76S05)},
+ mrnumber = {MR2250387 (2007i:65076)},
+ mrreviewer = {Michael Fr{\"o}hner},
+ DOI = {10.1016/j.cam.2005.11.022},
+ URL = {http://dx.doi.org/10.1016/j.cam.2005.11.022}
+}
+
+@Article{ bz06,
+ Author = {Burman, E. and Zunino, P.},
+ Journal = {Siam Jour. Num. Anal.},
+ Pages = {1612--1638},
+ Title = {A domain decomposition method based on interior penalties
+ for advection--diffusion--reaction problems},
+ Volume = {44},
+ Year = {2006}
+}
+
+###Article{ bz06,
+ Author = {Burman, E. and Zunino, P.},
+ Journal = {Siam Jour. Num. Anal.},
+ Pages = {1612--1638},
+ Title = {A domain decomposition method based on interior penalties
+ for advection--diffusion--reaction problems},
+ Volume = {44},
+ Year = {2006}
+}
+
+@Article{ caballero_numerical_2015,
+ langid = {english},
+ Title = {Numerical Simulation of Non-{{Newtonian}} Blood Flow
+ Dynamics in Human Thoracic Aorta},
+ Volume = {18},
+ ISSN = {1025-5842, 1476-8259},
+ URL = {http://www.tandfonline.com/doi/abs/10.1080/10255842.2014.887698},
+ DOI = {10.1080/10255842.2014.887698},
+ Number = {11},
+ JournalTitle = {Computer Methods in Biomechanics and Biomedical
+ Engineering},
+ URLDate = {2019-02-13},
+ Year = {2015-08-18},
+ Pages = {1200-1216},
+ Author = {Caballero, A.D. and LaÃn, S.}
+}
+
+@InCollection{ caiazzo2018mathematical,
+ Title = {Mathematical Modeling of Blood Flow in the Cardiovascular
+ System},
+ Author = {Caiazzo, A. and Vignon-Clementel, I.},
+ BookTitle = {Quantification of Biophysical Parameters in Medical
+ Imaging},
+ Pages = {45--70},
+ Year = {2018},
+ Publisher = {Springer}
+}
+
+@Article{ caiazzo_assessment_2017,
+ Title = {Assessment of Reduced-Order Unscented {{Kalman}} Filter
+ for Parameter Identification in 1-Dimensional Blood Flow
+ Models Using Experimental Data},
+ Volume = {33},
+ Number = {8},
+ JournalTitle = {International journal for numerical methods in biomedical
+ engineering},
+ Year = {2017},
+ Pages = {e2843},
+ Author = {Caiazzo, A. and Caforio, Federica and Montecinos, Gino and
+ Muller, Lucas O. and Blanco, Pablo J. and Toro, Eluterio
+ F.}
+}
+
+@Report{ caiazzo_projection_2010,
+ Title = {Projection Schemes for Fluid Flows through a Porous
+ Interface},
+ Number = {7725},
+ Institution = {{INRIA}},
+ Type = {Research Report},
+ Date = {2010},
+ Author = {Caiazzo, Alfonso and Fernández, Miguel A. and Gerbeau,
+ Jean-Frédéric and Martin, Vincent}
+}
+
+@Article{ cairncross-schunk-baer-rao-sackinger-00,
+ Author = {Cairncross, R.A. and Schunk, P.R. and Baer, T.A. and Rao,
+ R. and Sackinger, P.A.},
+ code = {mob5},
+ Journal = {Int. Jour. Num. Meth. Fluids},
+ Pages = {375-403},
+ Title = {A finite element method for free surface flows of
+ incompressible fluids in three dimensions. {Part I}:
+ Boundary fitted mesh motion},
+ Volume = {33},
+ Year = {2000}
+}
+
+###Article{ cairncross-schunk-baer-rao-sackinger-00,
+ Author = {Cairncross, R.A. and Schunk, P.R. and Baer, T.A. and Rao,
+ R. and Sackinger, P.A.},
+ code = {mob5},
+ Journal = {Int. Jour. Num. Meth. Fluids},
+ Pages = {375-403},
+ Title = {A finite element method for free surface flows of
+ incompressible fluids in three dimensions. {Part I}:
+ Boundary fitted mesh motion},
+ Volume = {33},
+ Year = {2000}
+}
+
+@Article{ callot2003mrm,
+ Title = {In vivo study of microcirculation in canine myocardium
+ using the IVIM method},
+ Author = {Callot, Virginie and Bennett, Eric and Decking, Ulrich
+ K.M. and Balaban, Robert S. and Wen, Han},
+ Journal = {Magnetic Resonance in Medicine},
+ Year = {2003},
+ Number = {3},
+ Pages = {531--540},
+ Volume = {50},
+ DOI = {10.1002/mrm.10568},
+ File = {:Callot2003MRM.pdf:PDF},
+ ISSN = {1522-2594},
+ Keywords = {IVIM, heart},
+ Publisher = {Wiley-Blackwell},
+ URL = {http://dx.doi.org/10.1002/mrm.10568}
+}
+
+@Article{ campbell_effect_2012,
+ Title = {Effect of Inlet Velocity Profiles on Patient-Specific
+ Computational Fluid Dynamics Simulations of the Carotid
+ Bifurcation},
+ Volume = {134},
+ Number = {5},
+ JournalTitle = {Journal of biomechanical engineering},
+ Year = {2012},
+ Pages = {051001},
+ Author = {Campbell, Ian C. and Ries, Jared and Dhawan, Saurabh S.
+ and Quyyumi, Arshed A. and Taylor, W. Robert and Oshinski,
+ John N.}
+}
+
+@Unpublished{ cances-gerbeau-mikelic,
+ Author = {Canc{\`e}s, E. and Gerbeau, J-F. and Mikelic, A.},
+ Note = {en pr{\'e}paration}
+}
+
+###Unpublished{ cances-gerbeau-mikelic,
+ Author = {Canc{\`e}s, E. and Gerbeau, J-F. and Mikelic, A.},
+ Note = {en pr{\'e}paration}
+}
+
+@Unpublished{ cannone,
+ Author = {Cannone, M. and Planchon, F.},
+ Note = {submitted to {\it Diff. Int. Eq.}},
+ Title = {On the nonstationary {Navier-Stokes} equations with an
+ external force}
+}
+
+###Unpublished{ cannone,
+ Author = {Cannone, M. and Planchon, F.},
+ Note = {submitted to {\it Diff. Int. Eq.}},
+ Title = {On the nonstationary {Navier-Stokes} equations with an
+ external force}
+}
+
+@Unpublished{ cannone2,
+ Author = {Cannone, M. and Planchon, F.},
+ Note = {submitted to {\it Revista Matematica Iberoamericana}},
+ Title = {On the regularity of the bilinear terms for solutions to
+ the incompressible {Navier-Stokes} equations}
+}
+
+###Unpublished{ cannone2,
+ Author = {Cannone, M. and Planchon, F.},
+ Note = {submitted to {\it Revista Matematica Iberoamericana}},
+ Title = {On the regularity of the bilinear terms for solutions to
+ the incompressible {Navier-Stokes} equations}
+}
+
+@Article{ canstein_3d_2008,
+ Title = {{{3D MR}} Flow Analysis in Realistic Rapid-Prototyping
+ Model Systems of the Thoracic Aorta: Comparison with in
+ Vivo Data and Computational Fluid Dynamics in Identical
+ Vessel Geometries},
+ ShortTitle = {{{3D MR}} Flow Analysis in Realistic Rapid-Prototyping
+ Model Systems of the Thoracic Aorta},
+ Author = {Canstein, C. and Cachot, P. and Faust, A. and Stalder, A.
+ F. and Bock, J. and Frydrychowicz, A. and K{\"u}ffer, J.
+ and Hennig, J. and Markl, Michael},
+ Year = {2008},
+ Volume = {59},
+ Pages = {535--546},
+ Journal = {Magnetic Resonance in Medicine: An Official Journal of the
+ International Society for Magnetic Resonance in Medicine},
+ Number = {3}
+}
+
+@Unpublished{ carmody-2005,
+ Author = {Carmody, C.J. and Burriesci, G. and Howard, I.C. and
+ Patterson, E.A.},
+ Journal = {Journal of Biomechanics},
+ Title = {An approach to the simulation of fluid-structure
+ interaction in the aortic valve},
+ Year = {2005}
+}
+
+###Unpublished{ carmody-2005,
+ Author = {Carmody, C.J. and Burriesci, G. and Howard, I.C. and
+ Patterson, E.A.},
+ Journal = {Journal of Biomechanics},
+ Title = {An approach to the simulation of fluid-structure
+ interaction in the aortic valve},
+ Year = {2005}
+}
+
+@Article{ carrillo-99,
+ Author = {Carrillo, J.},
+ Journal = {Arch. Rational Mech. Anal.},
+ Pages = {269-361},
+ Volume = {147},
+ Year = {1999}
+}
+
+###Article{ carrillo-99,
+ Author = {Carrillo, J.},
+ Journal = {Arch. Rational Mech. Anal.},
+ Pages = {269-361},
+ Volume = {147},
+ Year = {1999}
+}
+
+@Article{ carrillo2018optimal,
+ Title = {Optimal Dual-VENC Unwrapping in Phase-Contrast MRI},
+ Author = {Carrillo, Hugo and Osses, Axel and Uribe, Sergio and
+ Bertoglio, Crist{\'o}bal},
+ Journal = {IEEE transactions on medical imaging},
+ Volume = {38},
+ Number = {5},
+ Pages = {1263--1270},
+ Year = {2018},
+ Publisher = {IEEE}
+}
+
+@Article{ carrillo_optimal_2018,
+ Title = {Optimal {{Dual}}-{{VENC}} ({{ODV}}) {{Unwrapping}} in
+ {{Phase}}-{{Contrast MRI}}},
+ Author = {Carrillo, Hugo and Osses, Axel and Uribe, Sergio and
+ Bertoglio, Crist{\'o}bal},
+ Year = {2018},
+ Journal = {IEEE transactions on medical imaging}
+}
+
+@Article{ carrillo_optimal_2018-1,
+ Title = {Optimal {{Dual}}-{{VENC}} ({{ODV}}) {{Unwrapping}} in
+ {{Phase}}-{{Contrast MRI}}},
+ ISSN = {0278-0062},
+ DOI = {10.1109/TMI.2018.2882553},
+ JournalTitle = {IEEE Transactions on Medical Imaging},
+ Date = {2018},
+ Pages = {1-1},
+ Author = {Carrillo, H. and Osses, A. and Uribe, S. and Bertoglio,
+ C.}
+}
+
+@Article{ carrive-le-tallec-mouro-95,
+ Author = {Carrive, M. and Le Tallec, P. and Mouro, J.},
+ Journal = {Revue Europ{\'e}enne des El{\'e}ments Finis},
+ Number = {5-6},
+ Pages = {633-662},
+ Title = {Approximation par El{\'e}ments Finis d'un mod{\`e}le de
+ coques minces g{\'e}om{\'e}triquement exact},
+ Volume = {4},
+ Year = {1995}
+}
+
+###Article{ carrive-le-tallec-mouro-95,
+ Author = {Carrive, M. and Le Tallec, P. and Mouro, J.},
+ Journal = {Revue Europ{\'e}enne des El{\'e}ments Finis},
+ Number = {5-6},
+ Pages = {633-662},
+ Title = {Approximation par El{\'e}ments Finis d'un mod{\`e}le de
+ coques minces g{\'e}om{\'e}triquement exact},
+ Volume = {4},
+ Year = {1995}
+}
+
+@Article{ casas_4d_2016,
+ Title = {{{4D}} Flow {{MRI}}-{{Based}} Pressure Loss Estimation in
+ Stenotic Flows: {{Evaluation}} Using Numerical
+ Simulations},
+ Volume = {75},
+ ShortTitle = {{{4D}} Flow {{MRI}}-{{Based}} Pressure Loss Estimation in
+ Stenotic Flows},
+ Number = {4},
+ JournalTitle = {Magnetic resonance in medicine},
+ Year = {2016},
+ Pages = {1808--1821},
+ Author = {Casas, Belen and Lantz, Jonas and Dyverfeldt, Petter and
+ Ebbers, Tino}
+}
+
+@InBook{ caseau-62,
+ Annote = {mhd, flow},
+ Author = {Caseau, P.},
+ code = {mhd19},
+ Pages = {63-83},
+ Publisher = {Eyrolles},
+ Series = {Collection du Laboratoire National d'Hydraulique},
+ Title = {Ecoulements plans en magn{\'e}tohydrodynamique},
+ Year = {1962}
+}
+
+###InBook{ caseau-62,
+ Annote = {mhd, flow},
+ Author = {Caseau, P.},
+ code = {mhd19},
+ Pages = {63-83},
+ Publisher = {Eyrolles},
+ Series = {Collection du Laboratoire National d'Hydraulique},
+ Title = {Ecoulements plans en magn{\'e}tohydrodynamique},
+ Year = {1962}
+}
+
+@InProceedings{ castro-diaz-hecht-mohammadi-95,
+ Author = {Castro-Diaz, M.J. and Hecht, F. and Mohammadi, B.},
+ BookTitle = {Proc. of the 4th Int. meshing Roundtable, Albuquerque,
+ USA},
+ Month = {Oct.},
+ Title = {New progress in anisotropic grid adaptation for inviscid
+ and viscous flows simulations},
+ Year = {1995}
+}
+
+###InProceedings{ castro-diaz-hecht-mohammadi-95,
+ Author = {Castro-Diaz, M.J. and Hecht, F. and Mohammadi, B.},
+ BookTitle = {Proc. of the 4th Int. meshing Roundtable, Albuquerque,
+ USA},
+ Month = {Oct.},
+ Title = {New progress in anisotropic grid adaptation for inviscid
+ and viscous flows simulations},
+ Year = {1995}
+}
+
+@Unpublished{ causin-gerbeau,
+ Author = {Causin, P. and Gerbeau, J-F.},
+ Note = {in preparation},
+ Title = {Parallel-in-time fluid-structure simulations}
+}
+
+###Unpublished{ causin-gerbeau,
+ Author = {Causin, P. and Gerbeau, J-F.},
+ Note = {in preparation},
+ Title = {Parallel-in-time fluid-structure simulations}
+}
+
+@Article{ causin-gerbeau-nobile-05,
+ Author = {Causin, P. and Gerbeau, J-F. and Nobile, F.},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Number = {42--44},
+ Pages = {4506--4527},
+ Title = {Added-mass effect in the design of partitioned algorithms
+ for fluid-structure problems},
+ Volume = {194},
+ Year = {2005}
+}
+
+###Article{ causin-gerbeau-nobile-05,
+ Author = {Causin, P. and Gerbeau, J-F. and Nobile, F.},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Number = {42--44},
+ Pages = {4506--4527},
+ Title = {Added-mass effect in the design of partitioned algorithms
+ for fluid-structure problems},
+ Volume = {194},
+ Year = {2005}
+}
+
+@Article{ causin2005added,
+ Title = {Added-mass effect in the design of partitioned algorithms
+ for fluid--structure problems},
+ Author = {Causin, P. and Gerbeau, J-F. and Nobile, F.},
+ Journal = {Computer methods in applied mechanics and engineering},
+ Volume = {194},
+ Number = {42-44},
+ Pages = {4506--4527},
+ Year = {2005},
+ Publisher = {Elsevier}
+}
+
+@Article{ cavalcante-etal-11,
+ Author = {Cavalcante, J. and Lima, J. and Redheuil, A. and
+ Al-Mallah, M.},
+ Title = {Aortic stiffness: current understanding and future
+ directions},
+ Journal = {Journal of the American College of Cardiology},
+ Volume = {57},
+ Year = {2011},
+ Number = {14},
+ Pages = {1511-1522},
+ pubmedid = {},
+ ISSN = {0735-1097}
+}
+
+@Article{ cayco_finite_1986,
+ Title = {Finite Element Technique for Optimal Pressure Recovery
+ from Stream Function Formulation of Viscous Flows},
+ Volume = {46},
+ Number = {174},
+ JournalTitle = {Mathematics of computation},
+ Year = {1986},
+ Pages = {371--377},
+ Author = {Cayco, M. E. and Nicolaides, R. A.}
+}
+
+@Article{ cazeau-alonso-2004,
+ Author = {Cazeau, S. and Alonso, C. and Jauvert, G. and Lazarus, A.
+ and Ritter, P.},
+ Journal = {Europace},
+ Pages = {S42-S48},
+ Title = {Cardiac resynchronization therapy},
+ Volume = {5},
+ Year = {2004}
+}
+
+###Article{ cazeau-alonso-2004,
+ Author = {Cazeau, S. and Alonso, C. and Jauvert, G. and Lazarus, A.
+ and Ritter, P.},
+ Journal = {Europace},
+ Pages = {S42-S48},
+ Title = {Cardiac resynchronization therapy},
+ Volume = {5},
+ Year = {2004}
+}
+
+###Article{ cazeau-alonso-2004,
+ Author = {Cazeau, S. and Alonso, C. and Jauvert, G. and Lazarus, A.
+ and Ritter, P.},
+ Journal = {Europace},
+ Pages = {S42-S48},
+ Title = {Cardiac resynchronization therapy},
+ Volume = {5},
+ Year = {2004}
+}
+
+###Article{ cazeau-alonso-2004,
+ Author = {Cazeau, S. and Alonso, C. and Jauvert, G. and Lazarus, A.
+ and Ritter, P.},
+ Journal = {Europace},
+ Pages = {S42-S48},
+ Title = {Cardiac resynchronization therapy},
+ Volume = {5},
+ Year = {2004}
+}
+
+@Article{ cazeau-leclercq-lavergne-2001,
+ Author = {Cazeau, S. and Leclercq, C. and Lavergne, T. and et al.},
+ Journal = {The New England Journal of Medicine},
+ Number = {12},
+ Title = {Effects of multisite biventricular pacing in patients with
+ heart failure and intraventricular conduction delay},
+ Volume = {344},
+ Year = {2001}
+}
+
+###Article{ cazeau-leclercq-lavergne-2001,
+ Author = {Cazeau, S. and Leclercq, C. and Lavergne, T. and et al.},
+ Journal = {The New England Journal of Medicine},
+ Number = {12},
+ Title = {Effects of multisite biventricular pacing in patients with
+ heart failure and intraventricular conduction delay},
+ Volume = {344},
+ Year = {2001}
+}
+
+###Article{ cazeau-leclercq-lavergne-2001,
+ Author = {Cazeau, S. and Leclercq, C. and Lavergne, T. and et al.},
+ Journal = {The New England Journal of Medicine},
+ Number = {12},
+ Title = {Effects of multisite biventricular pacing in patients with
+ heart failure and intraventricular conduction delay},
+ Volume = {344},
+ Year = {2001}
+}
+
+###Article{ cazeau-leclercq-lavergne-2001,
+ Author = {Cazeau, S. and Leclercq, C. and Lavergne, T. and et al.},
+ Journal = {The New England Journal of Medicine},
+ Number = {12},
+ Title = {Effects of multisite biventricular pacing in patients with
+ heart failure and intraventricular conduction delay},
+ Volume = {344},
+ Year = {2001}
+}
+
+@Article{ cazeau-ritter-94,
+ Author = {Cazeau, S. and Ritter, P. and Bakdach, H. and et al.},
+ Journal = {Pacing Clin. Electrophysiol},
+ Pages = {1974-1979},
+ Title = {Four chamber pacing in dilated cardiomyopathy},
+ Volume = 17,
+ Year = 1994
+}
+
+###Article{ cazeau-ritter-94,
+ Author = {Cazeau, S. and Ritter, P. and Bakdach, H. and et al.},
+ Journal = {Pacing Clin. Electrophysiol},
+ Pages = {1974-1979},
+ Title = {Four chamber pacing in dilated cardiomyopathy},
+ Volume = 17,
+ Year = 1994
+}
+
+@Article{ cerqueira2002standardized,
+ Title = {Standardized myocardial segmentation and nomenclature for
+ tomographic imaging of the heart a statement for healthcare
+ professionals from the cardiac imaging committee of the
+ Council on Clinical Cardiology of the American Heart
+ Association},
+ Author = {Cerqueira, Manuel D and Weissman, Neil J and Dilsizian,
+ Vasken and Jacobs, Alice K and Kaul, Sanjiv and Laskey,
+ Warren K and Pennell, Dudley J and Rumberger, John A and
+ Ryan, Thomas and Verani, Mario S and others},
+ Journal = {Circulation},
+ Volume = {105},
+ Number = {4},
+ Pages = {539--542},
+ Year = {2002},
+ Publisher = {Am Heart Assoc}
+}
+
+@Article{ chabiniok-etal-11,
+ affiliation = {INRIA, Rocquencourt, B.P. 105, 78153 Le Chesnay, France},
+ Author = {Chabiniok, R. and Moireau, P. and Lesault, P.-F. and
+ Rahmouni, A. and Deux, J.-F. and Chapelle, D.},
+ ISSN = {1617-7959},
+ Journal = {Biomechanics and Modeling in Mechanobiology},
+ keyword = {Physics and Astronomy},
+ Note = {10.1007/s10237-011-0337-8},
+ Pages = {1-22},
+ Publisher = {Springer Berlin / Heidelberg},
+ Title = {Estimation of tissue contractility from cardiac cine-MRI
+ using a biomechanical heart model},
+ URL = {http://dx.doi.org/10.1007/s10237-011-0337-8},
+ Year = {2011},
+ bdsk-url-1 = {http://dx.doi.org/10.1007/s10237-011-0337-8}
+}
+
+@Article{ chabiniok2011,
+ affiliation = {INRIA, Rocquencourt, B.P. 105, 78153 Le Chesnay, France},
+ Author = {Chabiniok, R. and Moireau, P. and Lesault, P.-F. and
+ Rahmouni, A. and Deux, J.-F. and Chapelle, D.},
+ ISSN = {1617-7959},
+ Journal = {Biomechanics and Modeling in Mechanobiology},
+ keyword = {Physics and Astronomy},
+ Note = {10.1007/s10237-011-0337-8},
+ Pages = {1-22},
+ Publisher = {Springer Berlin / Heidelberg},
+ Title = {Estimation of tissue contractility from cardiac cine-MRI
+ using a biomechanical heart model},
+ Year = {2011}
+}
+
+@Article{ chabiniok2012bmmb,
+ Title = {Estimation of tissue contractility from cardiac cine-{MRI}
+ using a biomechanical heart model},
+ Author = {Chabiniok, R. and Moireau, P. and Lesault, P.-F. and
+ Rahmouni, A. and Deux, J.-F. and Chapelle, D.},
+ Journal = {Biomechanics and Modeling in Mechanobiology},
+ Year = {2012},
+ Month = {May},
+ Number = {5},
+ Pages = {609-630},
+ Volume = {11},
+ DOI = {10.1007/s10237-011-0337-8},
+ File = {:chabiniok12.pdf:PDF},
+ Keywords = {contractility, inverse problems, MRI},
+ Publisher = {Springer-Verlag},
+ timestamp = {2014/01/09}
+}
+
+@Article{ chabiniok2016multiphysics,
+ Title = {Multiphysics and multiscale modelling, data--model fusion
+ and integration of organ physiology in the clinic:
+ ventricular cardiac mechanics},
+ Author = {Chabiniok, Radomir and Wang, Vicky Y and
+ Hadjicharalambous, Myrianthi and Asner, Liya and Lee, Jack
+ and Sermesant, Maxime and Kuhl, Ellen and Young, Alistair A
+ and Moireau, Philippe and Nash, Martyn P and others},
+ Journal = {Interface focus},
+ Volume = {6},
+ Number = {2},
+ Pages = {20150083},
+ Year = {2016},
+ Publisher = {Royal Society}
+}
+
+@Article{ chabiniok_multiphysics_2016,
+ Title = {Multiphysics and Multiscale Modelling,
+ Data\textendash{}model Fusion and Integration of Organ
+ Physiology in the Clinic: Ventricular Cardiac Mechanics},
+ Volume = {6},
+ ISSN = {2042-8898},
+ ShortTitle = {Multiphysics and Multiscale Modelling,
+ Data\textendash{}model Fusion and Integration of Organ
+ Physiology in the Clinic},
+ DOI = {10.1098/rsfs.2015.0083},
+ Abstract = {With heart and cardiovascular diseases continually
+ challenging healthcare systems worldwide, translating basic
+ research on cardiac (patho)physiology into clinical care is
+ essential. Exacerbating this already extensive challenge is
+ the complexity of the heart, relying on its hierarchical
+ structure and function to maintain cardiovascular flow.
+ Computational modelling has been proposed and actively
+ pursued as a tool for accelerating research and
+ translation. Allowing exploration of the relationships
+ between physics, multiscale mechanisms and function,
+ computational modelling provides a platform for improving
+ our understanding of the heart. Further integration of
+ experimental and clinical data through data assimilation
+ and parameter estimation techniques is bringing
+ computational models closer to use in routine clinical
+ practice. This article reviews developments in
+ computational cardiac modelling and how their integration
+ with medical imaging data is providing new pathways for
+ translational cardiac modelling.},
+ timestamp = {2017-11-16T15:24:06Z},
+ Number = {2},
+ URLDate = {2017-11-16},
+ Journal = {Interface Focus},
+ Author = {Chabiniok, R. and Wang, V. and Hadjicharalambous, M. and
+ Asner, L. and Lee, J. and Sermesant, M. and Kuhl, E. and
+ Young, A. and Moireau, P. and Nash, M. and Chapelle, D. and
+ Nordsletten, D.},
+ Month = apr,
+ Year = {2016},
+ File = {PubMed Central Full Text
+ PDF:/home/hoermann/.zotero/zotero/krpbc0h6.default/zotero/storage/4ID84DD3/Chabiniok
+ et al. - 2016 - Multiphysics and multiscale modelling,
+ dataâmodel .pdf:application/pdf},
+ pmid = {27051509},
+ pmcid = {PMC4759748}
+}
+
+@Book{ chapelle-bathe-03,
+ Author = {Chapelle, D. and Bathe, K.J.},
+ Publisher = {Springer Verlag},
+ Title = {The Finite Element Analysis of Shells - Fundamentals},
+ Year = {2003}
+}
+
+###Book{ chapelle-bathe-03,
+ Author = {Chapelle, D. and Bathe, K.J.},
+ Publisher = {Springer Verlag},
+ Title = {The Finite Element Analysis of Shells - Fundamentals},
+ Year = {2003}
+}
+
+@TechReport{ chapelle-cindea-buhan-moireau,
+ Author = {Chapelle, D. and C\^{\i}ndea, N. and de Buhan, M. and
+ Moireau, P.},
+ date-added = {2011-09-09 15:34:42 +0200},
+ date-modified = {2011-09-09 15:35:26 +0200},
+ Institution = {INRIA},
+ Note = {Submitted to CRAS Series I,
+ http://hal.inria.fr/inria-00619504/fr},
+ Number = {7728},
+ Title = {Exponential convergence of an observer based on partial
+ field measurements for the wave equation},
+ Type = {Research Report},
+ Year = {2011}
+}
+
+###TechReport{ chapelle-cindea-buhan-moireau,
+ Author = {Chapelle, D. and C\^{\i}ndea, N. and de Buhan, M. and
+ Moireau, P.},
+ date-added = {2011-09-09 15:34:42 +0200},
+ date-modified = {2011-09-09 15:35:26 +0200},
+ Institution = {INRIA},
+ Note = {Submitted to CRAS Series I,
+ http://hal.inria.fr/inria-00619504/fr},
+ Number = {7728},
+ Title = {Exponential convergence of an observer based on partial
+ field measurements for the wave equation},
+ Type = {Research Report},
+ Year = {2011}
+}
+
+@Unpublished{ chapelle-cindea-moireau,
+ Author = {Chapelle, D. and C\^{\i}ndea, N. and Moireau, P.},
+ date-added = {2011-09-09 15:38:25 +0200},
+ date-modified = {2011-09-09 15:39:57 +0200},
+ Note = {Submitted to M3AS},
+ Title = {Improving convergence in numerical analysis using
+ observers - The wave-like equation case}
+}
+
+###Unpublished{ chapelle-cindea-moireau,
+ Author = {Chapelle, D. and C\^{\i}ndea, N. and Moireau, P.},
+ date-added = {2011-09-09 15:38:25 +0200},
+ date-modified = {2011-09-09 15:39:57 +0200},
+ Note = {Submitted to M3AS},
+ Title = {Improving convergence in numerical analysis using
+ observers - The wave-like equation case}
+}
+
+@InProceedings{ chapelle-etal-09,
+ Author = {Chapelle, D. and Fern\'{a}ndez, M. A. and Gerbeau, J.-F.
+ and Moireau, P. and Sainte-Marie, J. and Zemzemi, N.},
+ Title = {Numerical Simulation of the Electromechanical Activity of
+ the Heart},
+ BookTitle = {Proceedings of the 5th International Conference on
+ Functional Imaging and Modeling of the Heart},
+ Series = {FIMH '09},
+ Year = {2009},
+ ISBN = {978-3-642-01931-9},
+ Location = {Nice, France},
+ Pages = {357--365},
+ numpages = {9},
+ acmid = {1560736},
+ Publisher = {Springer-Verlag},
+ Address = {Berlin, Heidelberg}
+}
+
+@Article{ chapelle-moireau-letallec-09,
+ Author = {Chapelle, D. and Moireau, P. and Le Tallec, P.},
+ date-added = {2011-09-09 16:13:06 +0200},
+ date-modified = {2011-09-09 16:13:06 +0200},
+ Journal = {DCDS--A},
+ Month = {January/February},
+ Note = {A special issue Dedicated to Ta-Tsien Li on the Occasion
+ of his 70th Birthday},
+ Number = {1/2},
+ Pages = {65--84},
+ read = {Yes},
+ Title = {Robust filtering for joint state-parameter estimation in
+ distributed mechanical systems},
+ Volume = {23},
+ Year = {2009}
+}
+
+###Article{ chapelle-moireau-letallec-09,
+ Author = {Chapelle, D. and Moireau, P. and Le Tallec, P.},
+ date-added = {2011-09-09 16:13:06 +0200},
+ date-modified = {2011-09-09 16:13:06 +0200},
+ Journal = {DCDS--A},
+ Month = {January/February},
+ Note = {A special issue Dedicated to Ta-Tsien Li on the Occasion
+ of his 70th Birthday},
+ Number = {1/2},
+ Pages = {65--84},
+ read = {Yes},
+ Title = {Robust filtering for joint state-parameter estimation in
+ distributed mechanical systems},
+ Volume = {23},
+ Year = {2009}
+}
+
+@Article{ chapelle2009compmech,
+ Title = {A poroelastic model valid in large strains with
+ applications to perfusion in cardiac modeling},
+ Author = {Chapelle, D. and Gerbeau, J.-F. and Sainte-Marie, J. and
+ Vignon-Clementel, I. E.},
+ Journal = {Computational Mechanics},
+ Year = {2009},
+ Month = {Dec},
+ Number = {1},
+ Pages = {91--101},
+ Volume = {46},
+ DOI = {10.1007/s00466-009-0452-x},
+ File = {:Chapelle2009CompMech.pdf:PDF},
+ ISSN = {1432-0924},
+ Keywords = {Perfusion, FSI},
+ Publisher = {Springer Science + Business Media},
+ URL = {http://dx.doi.org/10.1007/s00466-009-0452-x}
+}
+
+@Article{ chapelle2009robust,
+ Title = {Robust filtering for joint state parameter estimation for
+ distributed mechanical systems},
+ Author = {Chapelle, Dominique and Moireau, Philippe and Le Tallec,
+ Patrick},
+ Journal = {Discrete and Continuous Dynamical Systems-Series A},
+ Volume = {23},
+ Number = {1-2},
+ Pages = {65--84},
+ Year = {2009}
+}
+
+@Article{ chapelle2012energy,
+ Title = {Energy-preserving muscle tissue model: formulation and
+ compatible discretizations},
+ Author = {Chapelle, Dominique and Le Tallec, Patrick and Moireau,
+ Philippe and Sorine, Michel},
+ Journal = {International Journal for Multiscale Computational
+ Engineering},
+ Volume = {10},
+ Number = {2},
+ Year = {2012},
+ Publisher = {Begel House Inc.}
+}
+
+@Article{ chapelle2012ijmce,
+ Title = {An energy-preserving muscle tissue model: formulation and
+ compatible discretizations},
+ Author = {Chapelle, Dominique and Le Tallec, Patrick and Moireau,
+ Philippe and Sorine, Michel},
+ Journal = {International Journal for Multiscale Computational
+ Engineering},
+ Year = {2012},
+ Number = {2},
+ Pages = {189--211},
+ Volume = {10},
+ DOI = {10.1615/IntJMultCompEng.2011002360},
+ File = {:chapelle12.pdf:PDF},
+ Publisher = {Begel House Inc.},
+ timestamp = {2014/01/14}
+}
+
+@Article{ chapelle2013dataassim,
+ Title = {Fundamental principles of data assimilation underlying the
+ Verdandi library: applications to biophysical model
+ personalization within euHeart},
+ Author = {Chapelle, Dominique and Fragu, Marc and Mallet, Vivien and
+ Moireau, Philippe},
+ Journal = {Medical \& biological engineering \& computing},
+ Volume = {51},
+ Number = {11},
+ Pages = {1221--1233},
+ Year = {2013},
+ Publisher = {Springer}
+}
+
+@Book{ chavent-09,
+ Author = {Chavent, G.},
+ Title = {Nonlinear least squares for inverse problems},
+ Series = {Scientific Computation},
+ Note = {Theoretical foundations and step-by-step guide for
+ applications},
+ Publisher = {Springer},
+ Address = {New York},
+ Year = {2009},
+ Pages = {xiv+360},
+ ISBN = {978-90-481-2784-9},
+ mrclass = {65-02 (49N45 65N21 93E24)},
+ mrnumber = {2554448 (2011d:65001)},
+ mrreviewer = {Antonio C. G. Leit{\~a}o}
+}
+
+###Book{ chavent-09,
+ Author = {Chavent, G.},
+ Title = {Nonlinear least squares for inverse problems},
+ Series = {Scientific Computation},
+ Note = {Theoretical foundations and step-by-step guide for
+ applications},
+ Publisher = {Springer},
+ Address = {New York},
+ Year = {2009},
+ Pages = {xiv+360},
+ ISBN = {978-90-481-2784-9},
+ mrclass = {65-02 (49N45 65N21 93E24)},
+ mrnumber = {2554448 (2011d:65001)},
+ mrreviewer = {Antonio C. G. Leit{\~a}o}
+}
+
+@Book{ chavent-jaffre-86,
+ Author = { Chavent, G. and Jaffr{\AA}, J.},
+ Publisher = {North-Holland},
+ Title = { Mathematical models and finite elements for reservoir
+ simulation : single phase, multiphase and multicomponent
+ flows through porous media},
+ Year = {1986}
+}
+
+###Book{ chavent-jaffre-86,
+ Author = { Chavent, G. and Jaffr{\AA}, J.},
+ Publisher = {North-Holland},
+ Title = { Mathematical models and finite elements for reservoir
+ simulation : single phase, multiphase and multicomponent
+ flows through porous media},
+ Year = {1986}
+}
+
+@Unpublished{ chen-perthame,
+ Author = {Chen, G.Q. and Perthame, B.},
+ Note = {to appear in Ann. Inst. H. Poincar{\'e} (Anal. non
+ lin{\'e}aire)},
+ Title = {Well-Posedness for Non-Isotropic Degenerate
+ Parabolic-Hyperbolic Equation}
+}
+
+###Unpublished{ chen-perthame,
+ Author = {Chen, G.Q. and Perthame, B.},
+ Note = {to appear in Ann. Inst. H. Poincar{\'e} (Anal. non
+ lin{\'e}aire)},
+ Title = {Well-Posedness for Non-Isotropic Degenerate
+ Parabolic-Hyperbolic Equation}
+}
+
+@Article{ chen2003remodeling,
+ Author = {Chen, Junjie and Song, Sheng-Kwei and Liu, Wei and McLean,
+ Mark and Allen, J. Stacy and Tan, Jie and Wickline, Samuel
+ A. and Yu, Xin},
+ Title = {Remodeling of cardiac fiber structure after infarction in
+ rats quantified with diffusion tensor MRI},
+ Journal = {American Journal of Physiology - Heart and Circulatory
+ Physiology},
+ Year = {2003},
+ Volume = {285},
+ Pages = {H946--H954},
+ Number = {3},
+ DOI = {10.1152/ajpheart.00889.2002},
+ ISBN = {1522-1539},
+ ISSN = {0363-6135},
+ Publisher = {American Physiological Society}
+}
+
+@Article{ chen2005ajphcp,
+ Title = {Regional ventricular wall thickening reflects changes in
+ cardiac fiber and sheet structure during contraction:
+ quantification with diffusion tensor MRI.},
+ Author = {Chen, Junjie and Liu, Wei and Zhang, Huiying and Lacy, Liz
+ and Yang, Xiaoxia and Song, Sheng-Kwei and Wickline, Samuel
+ A. and Yu, Xin},
+ Journal = {Am J Physiol Heart Circ Physiol},
+ Year = {2005},
+ Month = {Nov},
+ Number = {5},
+ Pages = {H1898--H1907},
+ Volume = {289},
+ Abstract = {Dynamic changes of myocardial fiber and sheet structure
+ are key determinants of regional ventricular function.
+ However, quantitative characterization of the
+ contraction-related changes in fiber and sheet structure
+ has not been reported. The objective of this study was to
+ quantify cardiac fiber and sheet structure at selected
+ phases of the cardiac cycle. Diffusion tensor MRI was
+ performed on isolated, perfused Sprague-Dawley rat hearts
+ arrested or fixed in three states as follows: 1) potassium
+ arrested (PA), which represents end diastole; 2)
+ barium-induced contracture with volume (BV+), which
+ represents isovolumic contraction or early systole; and 3)
+ barium-induced contracture without volume (BV-), which
+ represents end systole. Myocardial fiber orientations at
+ the base, midventricle, and apex were determined from the
+ primary eigenvectors of the diffusion tensor. Sheet
+ structure was determined from the secondary and tertiary
+ eigenvectors at the same locations. We observed that the
+ transmural distribution of the myofiber helix angle
+ remained unchanged as contraction proceeded from PA to BV+,
+ but endocardial and epicardial fibers became more
+ longitudinally orientated in the BV- group. Although sheet
+ structure exhibited significant regional variations,
+ changes in sheet structure during myocardial contraction
+ were relatively uniform across regions. The magnitude of
+ the sheet angle, which is an index of local sheet slope,
+ decreased by 23 and 44\% in BV+ and BV- groups,
+ respectively, which suggests more radial orientation of the
+ sheet. In summary, we have shown for the first time that
+ geometric changes in both sheet and fiber orientation
+ provide a substantial mechanism for radial wall thickening
+ independent of active components due to myofiber
+ shortening. Our results provide direct evidence that sheet
+ reorientation is a primary determinant of myocardial wall
+ thickening.},
+ DOI = {10.1152/ajpheart.00041.2005},
+ Institution = {Cardiovascular Magnetic Resonance Laboratories, Department
+ of Medicine, Washington University, St Louis, Missouri,
+ USA.},
+ Keywords = {Animals; Barium Compounds, pharmacology; Chlorides,
+ pharmacology; Data Interpretation, Statistical; Diffusion
+ Magnetic Resonance Imaging; Heart Ventricles, anatomy /&/
+ histology; Heart, anatomy /&/ histology/physiology; In
+ Vitro Techniques; Muscle Fibers, Skeletal, physiology;
+ Myocardial Contraction, drug effects/physiology; Potassium
+ Chloride, pharmacology; Rats; Rats, Sprague-Dawley;
+ Systole; Ventricular Function},
+ Language = {eng},
+ medline-pst = {ppublish},
+ owner = {stoeckc},
+ pii = {289/5/H1898},
+ pmid = {16219812},
+ timestamp = {2015.07.24},
+ URL = {http://dx.doi.org/10.1152/ajpheart.00041.2005}
+}
+
+@Article{ cheng_assessment_2016,
+ langid = {english},
+ Title = {Assessment of {{Hemodynamic Conditions}} in the {{Aorta
+ Following Root Replacement}} with {{Composite
+ Valve}}-{{Conduit Graft}}},
+ Volume = {44},
+ ISSN = {1573-9686},
+ URL = {https://doi.org/10.1007/s10439-015-1453-x},
+ DOI = {10.1007/s10439-015-1453-x},
+ Abstract = {This paper presents the analysis of detailed hemodynamics
+ in the aortas of four patients following replacement with a
+ composite bio-prosthetic valve-conduit. Magnetic resonance
+ image-based computational models were set up for each
+ patient with boundary conditions comprising
+ subject-specific three-dimensional inflow velocity profiles
+ at the aortic root and central pressure waveform at the
+ model outlet. Two normal subjects were also included for
+ comparison. The purpose of the study was to investigate the
+ effects of the valve-conduit on flow in the proximal and
+ distal aorta. The results suggested that following the
+ composite valve-conduit implantation, the vortical flow
+ structure and hemodynamic parameters in the aorta were
+ altered, with slightly reduced helical flow index, elevated
+ wall shear stress and higher non-uniformity in wall shear
+ compared to normal aortas. Inter-individual analysis
+ revealed different hemodynamic conditions among the
+ patients depending on the conduit configuration in the
+ ascending aorta, which is a key factor in determining
+ post-operative aortic flow. Introducing a natural curvature
+ in the conduit to create a smooth transition between the
+ conduit and native aorta may help prevent the occurrence of
+ retrograde and recirculating flow in the aortic arch, which
+ is particularly important when a large portion or the
+ entire ascending aorta needs to be replaced.},
+ Number = {5},
+ JournalTitle = {Annals of Biomedical Engineering},
+ ShortJournal = {Ann Biomed Eng},
+ URLDate = {2019-03-09},
+ Year = {2016-05-01},
+ Pages = {1392-1404},
+ Author = {Cheng, Zhuo and Kidher, Emaddin and Jarral, Omar A. and
+ OâRegan, Declan P. and Wood, Nigel B. and Athanasiou,
+ Thanos and Xu, Xiao Yun}
+}
+
+@Article{ cheng_formula_2008,
+ Title = {Formula for the Viscosity of a Glycerol- Water Mixture},
+ Author = {Cheng, Nian-Sheng},
+ Year = {2008},
+ Volume = {47},
+ Pages = {3285--3288},
+ Journal = {Industrial \& engineering chemistry research},
+ Number = {9}
+}
+
+@Article{ chien-80,
+ Annote = {blood, aggregation, red cell},
+ Author = {Chien, S.},
+ code = {cel5},
+ Journal = {Adv. Chem. Ser.},
+ Pages = {3-38},
+ Title = {Aggregation of red blood cells: an electrochemical and
+ colloid chemical problem},
+ Year = {1980}
+}
+
+###Article{ chien-80,
+ Annote = {blood, aggregation, red cell},
+ Author = {Chien, S.},
+ code = {cel5},
+ Journal = {Adv. Chem. Ser.},
+ Pages = {3-38},
+ Title = {Aggregation of red blood cells: an electrochemical and
+ colloid chemical problem},
+ Year = {1980}
+}
+
+@Article{ chien-jan-73,
+ Annote = {blood, red cell, aggregation},
+ Author = {Chien, S. and Jan, K.M.},
+ code = {cel4},
+ Journal = {J. Supramolecular Structure},
+ Pages = {385-409},
+ Title = {Red cell aggregation by macromolecules. Roles of surface
+ adsorption and electrostatic repulsion},
+ Volume = {1},
+ Year = {1975}
+}
+
+###Article{ chien-jan-73,
+ Annote = {blood, red cell, aggregation},
+ Author = {Chien, S. and Jan, K.M.},
+ code = {cel4},
+ Journal = {J. Supramolecular Structure},
+ Pages = {385-409},
+ Title = {Red cell aggregation by macromolecules. Roles of surface
+ adsorption and electrostatic repulsion},
+ Volume = {1},
+ Year = {1975}
+}
+
+@Article{ cho_effects_1991,
+ langid = {english},
+ Title = {Effects of the Non-{{Newtonian}} Viscosity of Blood on
+ Flows in a Diseased Arterial Vessel. {{Part}} 1: {{Steady}}
+ Flows},
+ Volume = {28},
+ ISSN = {18785034, 0006355X},
+ URL = {http://www.medra.org/servlet/aliasResolver?alias=iospress&doi=10.3233/BIR-1991-283-415},
+ DOI = {10.3233/BIR-1991-283-415},
+ ShortTitle = {Effects of the Non-{{Newtonian}} Viscosity of Blood on
+ Flows in a Diseased Arterial Vessel. {{Part}} 1},
+ Abstract = {Effectsof the non-Newtonian viscosity of blood on a flow
+ in a coronary arterial castingof man were studied
+ numerically using a finite element method. Various
+ constitutive models were examined to model the
+ non-Newtonian viscosity of blood and their model constants
+ were sunrmarized. A method to incorporatethe non-Newtonian
+ vixosity of blood was introduced so that the viscosity
+ could be calculatedlocally. The Pressuredrop, wall shear
+ stressand velocity profiles for the caseof blood virosity
+ were comParedfor the caseof Newtonian viscoiity
+ (0.0.115poise). The effect of the non-Newtonian viscosity
+ of blood on \_ the overall pressrrri drop acrossthe
+ arterial casting was found to be significant at a flow of
+ the Reynoldsnumber of100 or less. Also in the region of
+ flow separationor recirculation, the non-Newtonian
+ viscosity of blood yields larger wall shear stressthan the
+ Newtonian case. The origin of the non-Newtonian viscosity
+ of blood was dixussed in relation to the viscoelasticity
+ and yield stressof blood.},
+ Number = {3-4},
+ JournalTitle = {Biorheology},
+ URLDate = {2019-02-13},
+ Year = {1991-06-01},
+ Pages = {241-262},
+ Author = {Cho, Young I. and Kensey, Kenneth R.}
+}
+
+@Article{ chorin-68,
+ Author = {Chorin, A.J.},
+ Journal = {Math. Comp.},
+ Pages = {745--762},
+ Title = {Numerical solution of the {N}avier-{S}tokes equations},
+ Volume = {22},
+ Year = {1968}
+}
+
+###Article{ chorin-68,
+ Author = {Chorin, A.J.},
+ Journal = {Math. Comp.},
+ Pages = {745--762},
+ Title = {Numerical solution of the {N}avier-{S}tokes equations},
+ Volume = {22},
+ Year = {1968}
+}
+
+@Article{ chorin-69,
+ Author = {Chorin, A.J.},
+ Journal = {Math. Comp.},
+ Pages = {341--353},
+ Title = {On the convergence of discrete approximations to the
+ {N}avier-{S}tokes equations},
+ Volume = {23},
+ Year = {1969}
+}
+
+###Article{ chorin-69,
+ Author = {Chorin, A.J.},
+ Journal = {Math. Comp.},
+ Pages = {341--353},
+ Title = {On the convergence of discrete approximations to the
+ {N}avier-{S}tokes equations},
+ Volume = {23},
+ Year = {1969}
+}
+
+@Article{ chorin1968mathcomp,
+ Title = {Numerical solution of the {N}avier-{S}tokes equations},
+ Author = {Chorin, A.J.},
+ Journal = {Mathematics of Computation},
+ Year = {1968},
+ Pages = {745--762},
+ Volume = {22},
+ Keywords = {Navier-Stokes}
+}
+
+@Article{ chorin1969mathcomp,
+ Title = {On the convergence of discrete approximations to the
+ {N}avier-{S}tokes equations},
+ Author = {Chorin, A.J.},
+ Journal = {Mathematics of Computation},
+ Year = {1969},
+ Pages = {341--353},
+ Volume = {23},
+ Keywords = {Navier-Stokes}
+}
+
+@Article{ chorin68,
+ Author = "Chorin, A.~J.",
+ Title = "{Numerical solution of the Navier-Stokes equations}",
+ Journal = {Math. Comp.},
+ fjournal = {Mathematics of Computation},
+ Volume = "22",
+ Pages = "745--762",
+ Year = "1968"
+}
+
+###Article{ chorin68,
+ Author = "Chorin, A.~J.",
+ Title = "{Numerical solution of the Navier-Stokes equations}",
+ Journal = {Math. Comp.},
+ fjournal = {Mathematics of Computation},
+ Volume = "22",
+ Pages = "745--762",
+ Year = "1968"
+}
+
+@Article{ chorin69,
+ Author = "Chorin, A.~J.",
+ Title = "{On the convergence of discrete approximations of the
+ Navier-Stokes equations}",
+ Journal = {Math. Comp.},
+ fjournal = {Mathematics of Computation},
+ Volume = "23",
+ Pages = "341--353",
+ Year = "1969"
+}
+
+###Article{ chorin69,
+ Author = "Chorin, A.~J.",
+ Title = "{On the convergence of discrete approximations of the
+ Navier-Stokes equations}",
+ Journal = {Math. Comp.},
+ fjournal = {Mathematics of Computation},
+ Volume = "23",
+ Pages = "341--353",
+ Year = "1969"
+}
+
+@Book{ ciarlet,
+ Editor = {Ciarlet, P.G. and Lions, J.-L.},
+ Publisher = {North-Holland},
+ Title = {Handbook of Numerical Analysis, Vol. 2, Finite Element
+ Methods (Part 1)},
+ Year = {1991}
+}
+
+###Book{ ciarlet,
+ Editor = {Ciarlet, P.G. and Lions, J.-L.},
+ Publisher = {North-Holland},
+ Title = {Handbook of Numerical Analysis, Vol. 2, Finite Element
+ Methods (Part 1)},
+ Year = {1991}
+}
+
+@Book{ ciarlet-02,
+ Author = {Ciarlet, P.~G.},
+ Title = {The finite element method for elliptic problems},
+ Series = {Classics in Applied Mathematics},
+ Volume = {40},
+ Publisher = {Society for Industrial and Applied Mathematics (SIAM)},
+ Address = {Philadelphia, PA},
+ Year = {2002}
+}
+
+###Book{ ciarlet-02,
+ Author = {Ciarlet, P.~G.},
+ Title = {The finite element method for elliptic problems},
+ Series = {Classics in Applied Mathematics},
+ Volume = {40},
+ Note = {Reprint of the 1978 original [North-Holland, Amsterdam;
+ MR0520174 (58 \#25001)]},
+ Publisher = {Society for Industrial and Applied Mathematics (SIAM)},
+ Address = {Philadelphia, PA},
+ Year = {2002}
+}
+
+@Book{ ciarlet-88,
+ Address = {Amsterdam},
+ Author = {Ciarlet, P.G.},
+ Publisher = {North-Holland Publishing Co.},
+ Series = {Studies in Mathematics and its Applications},
+ Title = {Mathematical elasticity. {V}ol. {I}},
+ Volume = {20},
+ Year = {1988}
+}
+
+###Book{ ciarlet-88,
+ Address = {Amsterdam},
+ Author = {Ciarlet, P.G.},
+ Publisher = {North-Holland Publishing Co.},
+ Series = {Studies in Mathematics and its Applications},
+ Title = {Mathematical elasticity. {V}ol. {I}},
+ Volume = {20},
+ Year = {1988}
+}
+
+@InProceedings{ cimrman-rohan-2003,
+ Author = {Cimrman, R. and Rohan, E.},
+ BookTitle = {Computational Fluid and Solid Mechanics},
+ Editor = {K.J. Bathe},
+ Publisher = {Elsevier},
+ Title = {Modelling heart tissue using a composite muscle model with
+ blood perfusion},
+ Year = {2003}
+}
+
+###InProceedings{ cimrman-rohan-2003,
+ Author = {Cimrman, R. and Rohan, E.},
+ BookTitle = {Computational Fluid and Solid Mechanics},
+ Editor = {K.J. Bathe},
+ Publisher = {Elsevier},
+ Title = {Modelling heart tissue using a composite muscle model with
+ blood perfusion},
+ Year = {2003}
+}
+
+###InProceedings{ cimrman-rohan-2003,
+ Author = {Cimrman, R. and Rohan, E.},
+ BookTitle = {Computational Fluid and Solid Mechanics},
+ Editor = {K.J. Bathe},
+ Publisher = {Elsevier},
+ Title = {Modelling heart tissue using a composite muscle model with
+ blood perfusion},
+ Year = {2003}
+}
+
+###InProceedings{ cimrman-rohan-2003,
+ Author = {Cimrman, R. and Rohan, E.},
+ BookTitle = {Computational Fluid and Solid Mechanics},
+ Editor = {K.J. Bathe},
+ Publisher = {Elsevier},
+ Title = {Modelling heart tissue using a composite muscle model with
+ blood perfusion},
+ Year = {2003}
+}
+
+@Article{ cioffi2011prognostic,
+ Title = {Prognostic effect of inappropriately high left ventricular
+ mass in asymptomatic severe aortic stenosis},
+ Author = {Cioffi, Giovanni and Faggiano, Pompilio and Vizzardi,
+ Enrico and Tarantini, Luigi and Cramariuc, Dana and Gerdts,
+ Eva and De Simone, Giovanni},
+ Journal = {Heart},
+ Volume = {97},
+ Number = {4},
+ Pages = {301--307},
+ Year = {2011},
+ Publisher = {BMJ Publishing Group Ltd and British Cardiovascular
+ Society}
+}
+
+@Article{ cioffi_prognostic_2011,
+ Title = {Prognostic Effect of Inappropriately High Left Ventricular
+ Mass in Asymptomatic Severe Aortic Stenosis},
+ Volume = {97},
+ Number = {4},
+ JournalTitle = {Heart},
+ Year = {2011},
+ Pages = {301--307},
+ Author = {Cioffi, Giovanni and Faggiano, Pompilio and Vizzardi,
+ Enrico and Tarantini, Luigi and Cramariuc, Dana and Gerdts,
+ Eva and de Simone, Giovanni},
+ Options = {useprefix=true}
+}
+
+@Book{ circulationheartwiki,
+ Title = {{Circulatory system}},
+ Author = {{Wikipedia Encyclopedia}},
+ Year = {2011}
+}
+
+###Book{ circulationheartwiki,
+ Title = {{Circulatory system}},
+ Author = {{Wikipedia Encyclopedia}},
+ Address = {\url{http://en.wikipedia.org/wiki/Circulatory_system}},
+ Year = {2011}
+}
+
+@InProceedings{ cito_sensitivity_2014,
+ langid = {english},
+ Title = {Sensitivity {{Analysis}} of the {{Boundary Conditions}} in
+ {{Simulations}} of the {{Flow}} in an {{Aortic
+ Coarctation}} under {{Rest}} and {{Stress Conditions}}},
+ ISBN = {978-3-642-54268-8},
+ Abstract = {Aortic coarctation is a congenital condition in which the
+ aorta is narrowed. The pressure drop through the aorta
+ depends on the extension of this narrowing. Therefore,
+ severe coarctations have important side-effects on the
+ hemodynamic conditions of the circulatory system. The
+ Computational Fluid Dynamics (CFD) simulation of the
+ hemodynamics in a patient specific aortic coarctation can
+ help to predict the pressure drop produced by the aorta
+ narrowing. Nevertheless, an accurate prediction of the
+ pressure drop, by means of CFD tools, depends strongly on
+ the boundary conditions (BCs). In this study we present the
+ results of ten simulations performed on a patient specific
+ aortic coarctation vasculature proposed in the second
+ MICCAI-STACOM CFD Challenge. The model includes ascending
+ aorta, arch, descending aorta, and upper branch vessels.
+ Specifically, we consider; two different physiological
+ states a) rest and b) stress condition. For both cases the
+ flow rate waveforms are provided at the ascending aorta and
+ descending aorta. The ten simulations are performed using
+ five different set of boundary conditions. The results are
+ reported and indications on the more accurate boundary
+ conditions are discussed.},
+ BookTitle = {Statistical {{Atlases}} and {{Computational Models}} of
+ the {{Heart}}. {{Imaging}} and {{Modelling Challenges}}},
+ Series = {Lecture {{Notes}} in {{Computer Science}}},
+ Publisher = {{Springer Berlin Heidelberg}},
+ Year = {2014},
+ Pages = {74-82},
+ Author = {Cito, Salvatore and Pallarés, Jordi and Vernet, Anton},
+ Editor = {Camara, Oscar and Mansi, Tommaso and Pop, Mihaela and
+ Rhode, Kawal and Sermesant, Maxime and Young, Alistair}
+}
+
+@Article{ clague-phillips-97,
+ Annote = {brinkman},
+ Author = {Clague, D. S. and Phillips, R. J.},
+ code = {por3},
+ Journal = {Phys. Fluid},
+ Number = {6},
+ Pages = {1562-1572},
+ Title = {A numerical calculation of the hydraulic permeability of
+ the three-dimensional disordered fibrous media},
+ Volume = {9},
+ Year = {1997}
+}
+
+###Article{ clague-phillips-97,
+ Annote = {brinkman},
+ Author = {Clague, D. S. and Phillips, R. J.},
+ code = {por3},
+ Journal = {Phys. Fluid},
+ Number = {6},
+ Pages = {1562-1572},
+ Title = {A numerical calculation of the hydraulic permeability of
+ the three-dimensional disordered fibrous media},
+ Volume = {9},
+ Year = {1997}
+}
+
+@Article{ clark-1976-1,
+ Author = {Clark, C.},
+ Journal = {J. Biomech.},
+ Pages = {521-528},
+ Title = {The fluid mechanics of the aortic stenosis - {I. Theory}
+ and steady flow experiments},
+ Volume = {9},
+ Year = {1976}
+}
+
+###Article{ clark-1976-1,
+ Author = {Clark, C.},
+ Journal = {J. Biomech.},
+ Pages = {521-528},
+ Title = {The fluid mechanics of the aortic stenosis - {I. Theory}
+ and steady flow experiments},
+ Volume = {9},
+ Year = {1976}
+}
+
+@Article{ clark-1976-2,
+ Author = {Clark, C.},
+ Journal = {J. Biomech.},
+ Pages = {567-573},
+ Title = {The fluid mechanics of the aortic stenosis - {II.
+ Unsteady} flow experiments},
+ Volume = {9},
+ Year = {1976}
+}
+
+###Article{ clark-1976-2,
+ Author = {Clark, C.},
+ Journal = {J. Biomech.},
+ Pages = {567-573},
+ Title = {The fluid mechanics of the aortic stenosis - {II.
+ Unsteady} flow experiments},
+ Volume = {9},
+ Year = {1976}
+}
+
+@Article{ clark_energy_1979,
+ Title = {Energy Losses in Flow through Stenosed Valves},
+ Author = {Clark, C.},
+ Year = {1979},
+ Volume = {12},
+ Pages = {737--746},
+ Journal = {Journal of biomechanics},
+ Number = {10}
+}
+
+@Article{ clayton2011review,
+ Title = {Models of cardiac tissue electrophysiology: progress,
+ challenges and open questions},
+ Author = {Clayton, RH and Bernus, Olivier and Cherry, EM and
+ Dierckx, Hans and Fenton, FH and Mirabella, L and Panfilov,
+ AV and Sachse, FB and Seemann, G and Zhang, H},
+ Journal = {Progress in biophysics and molecular biology},
+ Volume = {104},
+ Number = {1},
+ Pages = {22--48},
+ Year = {2011},
+ Publisher = {Elsevier}
+}
+
+@Article{ clement75,
+ Author = {Cl{\'e}ment, Ph.},
+ Journal = {Rev. Fran{\c c}aise Automat. Informat. Recherche
+ Op{\'e}rationnelle S{\'e}r. RAIRO Analyse Num{\'e}rique},
+ Number = {R-2},
+ Pages = {77--84},
+ Title = {Approximation by finite element functions using local
+ regularization},
+ Volume = {9},
+ Year = {1975}
+}
+
+###Article{ clement75,
+ Author = {Cl{\'e}ment, Ph.},
+ Journal = {Rev. Fran{\c c}aise Automat. Informat. Recherche
+ Op{\'e}rationnelle S{\'e}r. RAIRO Analyse Num{\'e}rique},
+ Number = {R-2},
+ Pages = {77--84},
+ Title = {Approximation by finite element functions using local
+ regularization},
+ Volume = {9},
+ Year = {1975}
+}
+
+@Article{ coffey2015modern,
+ Title = {The modern epidemiology of heart valve disease},
+ Author = {Coffey, S. and Cairns, B. and Iung, B.},
+ Journal = {Heart},
+ Year = {2015},
+ Publisher = {BMJ Publishing Group Ltd and British Cardiovascular
+ Society}
+}
+
+@Article{ cohen2000circ,
+ Title = {Favorable Remodeling Enhances Recovery of Regional
+ Myocardial Function in the Weeks After Infarction in
+ Ischemically Preconditioned Hearts},
+ Author = {Cohen, Michael V. and Yang, Xi-Ming and Neumann, Till and
+ Heusch, Gerd and Downey, James M.},
+ Journal = {Circulation},
+ Year = {2000},
+ Number = {5},
+ Pages = {579-583},
+ Volume = {102},
+ Abstract = {Background?In a previous study, we found that recovery of
+ segment shortening in the ischemic zone of conscious,
+ chronically instrumented rabbits was significantly better
+ in ischemically preconditioned than control animals after
+ 72 hours of reperfusion. However, although this period of
+ reperfusion was felt to be sufficient to allow recovery
+ from stunning, regional function was disproportionately low
+ for the size of the infarcts.Methods and Results?To further
+ characterize the recovery of left ventricular regional
+ function, rabbits were chronically instrumented with a
+ balloon occluder around a branch of the left coronary
+ artery and a pair of ultrasonic crystals to monitor segment
+ shortening in the ischemic zone. The preconditioned group
+ had 1 cycle of 5-minute occlusion/10-minute reperfusion
+ before a 30-minute occlusion, whereas control rabbits
+ experienced only the 30-minute occlusion. All monitored
+ segments were either dyskinetic or akinetic during the
+ 30-minute occlusion. There was no difference in function
+ between the 2 groups until 24 hours of reperfusion. At 72
+ hours, systolic shortening in control hearts averaged only
+ 5% of the preischemic value, whereas shortening was 29% of
+ baseline in preconditioned hearts. By day 21, systolic
+ shortening averaged 26% in control hearts and 65% in
+ preconditioned hearts (P<0.02) and appeared to have reached
+ a plateau. Infarct size was 31.4±2.8% and 15.5±2.1% in
+ control and preconditioned hearts, respectively. Moreover,
+ in ischemically preconditioned hearts, the recovery of
+ regional function was better than in controls for any given
+ amount of microinfarction in the myocardial segment between
+ crystals (P=0.02).Conclusions?The progressive improvement
+ in preconditioned hearts is most consistent with favorable
+ remodeling in the ischemic zone, which the preconditioning
+ process seems to accentuate.},
+ DOI = {10.1161/01.CIR.102.5.579},
+ EPrint = {http://circ.ahajournals.org/content/102/5/579.full.pdf+html},
+ File = {cohen00.pdf:cohen00.pdf:PDF},
+ timestamp = {2015/09/17},
+ URL = {http://circ.ahajournals.org/content/102/5/579.abstract}
+}
+
+@Article{ cohn00jacc,
+ Title = {Cardiac remodeling -- concepts and clinical implications:
+ a consensus paper from an international forum on cardiac
+ remodeling},
+ Author = {Cohn, Jay N and Ferrari, Roberto and Sharpe, Norman},
+ Journal = {Journal of the American College of Cardiology},
+ Year = {2000},
+ Number = {3},
+ Pages = {569--582},
+ Volume = {35},
+ File = {:cohn00.pdf:PDF},
+ Publisher = {Am Coll Cardio Found},
+ timestamp = {2014/11/27}
+}
+
+@Book{ constantin,
+ Author = {Constantin, P. and Foias, C. and Nicolaenko, B. and Temam,
+ R.},
+ Publisher = {Springer-Verlag},
+ Title = {Integral manifolds and inertial manifolds for dissipative
+ partial differential equations},
+ Year = {1989}
+}
+
+###Book{ constantin,
+ Author = {Constantin, P. and Foias, C. and Nicolaenko, B. and Temam,
+ R.},
+ Publisher = {Springer-Verlag},
+ Title = {Integral manifolds and inertial manifolds for dissipative
+ partial differential equations},
+ Year = {1989}
+}
+
+@Article{ constantino2013hcp,
+ Title = {Mechanistic insight into prolonged electromechanical delay
+ in dyssynchronous heart failure: a computational study},
+ Author = {Constantino, J. and Hu, Y. and Lardo, A.C. and Trayanova,
+ N.A.},
+ Journal = {{AJP}: Heart and Circulatory Physiology},
+ Year = {2013},
+ Month = oct,
+ Number = {8},
+ Pages = {H1265--H1273},
+ Volume = {305},
+ DOI = {10.1152/ajpheart.00426.2013},
+ File = {Constantino2013.pdf:/home/hoermann/.zotero/zotero/krpbc0h6.default/zotero/storage/WU2C5749/Constantino2013.pdf:application/pdf},
+ ISSN = {0363-6135, 1522-1539},
+ Keywords = {CRT},
+ Language = {en},
+ ShortTitle = {Mechanistic insight into prolonged electromechanical delay
+ in dyssynchronous heart failure},
+ URL = {http://ajpheart.physiology.org/cgi/doi/10.1152/ajpheart.00426.2013},
+ URLDate = {2014-11-27}
+}
+
+@Article{ constantino_computational_2012,
+ Title = {A computational approach to understanding the cardiac
+ electromechanical activation sequence in the normal and
+ failing heart, with translation to the clinical practice of
+ {CRT}},
+ Author = {Constantino, J. and Hu, Y. and Trayanova, N.A.},
+ Journal = {Progress in Biophysics and Molecular Biology},
+ Year = {2012},
+ Month = oct,
+ Number = {2-3},
+ Pages = {372--379},
+ Volume = {110},
+ DOI = {10.1016/j.pbiomolbio.2012.07.009},
+ File = {Constantino_2012.pdf:/home/hoermann/.zotero/zotero/krpbc0h6.default/zotero/storage/FM832U4J/Constantino_2012.pdf:application/pdf},
+ ISSN = {00796107},
+ Language = {en},
+ URL = {http://linkinghub.elsevier.com/retrieve/pii/S0079610712000545},
+ URLDate = {2014-11-28}
+}
+
+@Article{ conti_carotid_2016,
+ Title = {Carotid Artery Hemodynamics before and after Stenting:
+ {{A}} Patient Specific {{CFD}} Study},
+ Volume = {141},
+ ShortTitle = {Carotid Artery Hemodynamics before and after Stenting},
+ JournalTitle = {Computers \& Fluids},
+ Year = {2016},
+ Pages = {62--74},
+ Author = {Conti, Michele and Long, Chris and Marconi, Michele and
+ Berchiolli, Raffaella and Bazilevs, Yuri and Reali,
+ Alessandro}
+}
+
+@Article{ cookson2012jbm,
+ Title = {A novel porous mechanical framework for modelling the
+ interaction between coronary perfusion and myocardial
+ mechanics},
+ Author = {Cookson, A.N. and Lee, J. and Michler, C. and Chabiniok,
+ R. and Hyde, E. and Nordsletten, D.A. and Sinclair, M. and
+ Siebes, M. and Smith, N.P.},
+ Journal = {Journal of Biomechanics},
+ Year = {2012},
+ Month = {Mar},
+ Number = {5},
+ Pages = {850--855},
+ Volume = {45},
+ DOI = {10.1016/j.jbiomech.2011.11.026},
+ File = {:Cookson2012JBM.pdf:PDF},
+ ISSN = {0021-9290},
+ Keywords = {perfusion, FSI, heart},
+ Publisher = {Elsevier BV},
+ URL = {http://dx.doi.org/10.1016/j.jbiomech.2011.11.026}
+}
+
+@Book{ coron2007control,
+ Author = {Coron, J.M.},
+ ISBN = {9780821836682},
+ lccn = {2006048031},
+ Publisher = {American Mathematical Society},
+ Series = {Mathematical surveys and monographs},
+ Title = {Control and nonlinearity},
+ Year = {2007}
+}
+
+###Book{ coron2007control,
+ Author = {Coron, J.M.},
+ ISBN = {9780821836682},
+ lccn = {2006048031},
+ Publisher = {American Mathematical Society},
+ Series = {Mathematical surveys and monographs},
+ Title = {Control and nonlinearity},
+ URL = {http://books.google.com.pe/books?id=aEKv1bpcrKQC},
+ Year = {2007},
+ bdsk-url-1 = {http://books.google.com.pe/books?id=aEKv1bpcrKQC}
+}
+
+@article{corrado2015identification,
+ title={Identification of weakly coupled multiphysics problems. Application to the inverse problem of electrocardiography},
+ author={Corrado, Cesare and Gerbeau, Jean-Fr{\'e}d{\'e}ric and Moireau, Philippe},
+ journal={Journal of Computational Physics},
+ volume={283},
+ pages={271--298},
+ year={2015},
+ publisher={Elsevier}
+}
+
+@TechReport{ coulaud-94,
+ Annote = {mhd, free surface, asymptotic method, high frequencies,
+ metal forming},
+ Author = {Coulaud, O.},
+ code = {mhd35},
+ Institution = {INRIA RR-2407},
+ Title = {Mod{\'e}lisation haute fr{\'e}quence en
+ magn{\'e}tohydrodynamique: aspect magn{\'e}tique},
+ Year = {1994}
+}
+
+###TechReport{ coulaud-94,
+ Annote = {mhd, free surface, asymptotic method, high frequencies,
+ metal forming},
+ Author = {Coulaud, O.},
+ code = {mhd35},
+ Institution = {INRIA RR-2407},
+ Title = {Mod{\'e}lisation haute fr{\'e}quence en
+ magn{\'e}tohydrodynamique: aspect magn{\'e}tique},
+ Year = {1994}
+}
+
+@Article{ coulaud-henrot-94,
+ Annote = {mhd, free surface, metal forming},
+ Author = {Coulaud, O. and Henrot, A.},
+ code = {mhd34},
+ Journal = {SIAM J. Numer. Anal.},
+ Number = {4},
+ Pages = {1109-1127},
+ Title = {Numerical approximation of a free boundary problem arising
+ in electromagnetic shaping},
+ Volume = {31},
+ Year = {1994}
+}
+
+###Article{ coulaud-henrot-94,
+ Annote = {mhd, free surface, metal forming},
+ Author = {Coulaud, O. and Henrot, A.},
+ code = {mhd34},
+ Journal = {SIAM J. Numer. Anal.},
+ Number = {4},
+ Pages = {1109-1127},
+ Title = {Numerical approximation of a free boundary problem arising
+ in electromagnetic shaping},
+ Volume = {31},
+ Year = {1994}
+}
+
+@Book{ cover2012inftheory,
+ Title = {Elements of information theory},
+ Author = {Cover, Thomas M and Thomas, Joy A},
+ Publisher = {John Wiley \& Sons},
+ Year = {2012}
+}
+
+@InProceedings{ crelier_rapid_2011,
+ Title = {Rapid Relative Pressure Map Computation from
+ Velocity-Encoded Phase-Contrast Measurements},
+ BookTitle = {{{ISMRM}} 19th {{Annual Meeting}} \& {{Exhibition}}},
+ Author = {Crelier, Gerard R. and Brunner, D. and Kozerke, Sebastian
+ and Boesiger, Peter},
+ Year = {2011},
+ Publisher = {{International Society for Magnetic Resonance in Medicine
+ (ISMRM)}}
+}
+
+@Book{ curtain1995introduction,
+ Author = {Curtain, R.F. and Zwart, H.J.},
+ ISBN = {9780387944753},
+ lccn = {95005549},
+ Publisher = {Springer-Verlag},
+ Series = {Texts in applied mathematics},
+ Title = {An introduction to infinite-dimensional linear systems
+ theory},
+ Year = {1995}
+}
+
+###Book{ curtain1995introduction,
+ Author = {Curtain, R.F. and Zwart, H.J.},
+ ISBN = {9780387944753},
+ lccn = {95005549},
+ Publisher = {Springer-Verlag},
+ Series = {Texts in applied mathematics},
+ Title = {An introduction to infinite-dimensional linear systems
+ theory},
+ URL = {http://books.google.com/books?id=G\_x-F-l2V2UC},
+ Year = {1995},
+ bdsk-url-1 = {http://books.google.com/books?id=G%5C_x-F-l2V2UC}
+}
+
+@Book{ cvphysiology,
+ Title = {{Cardiovascular Physiology Concepts}},
+ Author = {Klabunde, R.},
+ Year = {2011}
+}
+
+###Book{ cvphysiology,
+ Title = {{Cardiovascular Physiology Concepts}},
+ Author = {Klabunde, R.},
+ Address = {\url{http://www.cvphysiology.com}},
+ Year = {2011}
+}
+
+@Article{ cyron2014ijes,
+ Title = {Vascular homeostasis and the concept of mechanobiological
+ stability },
+ Author = {C.J. Cyron and J.D. Humphrey},
+ Journal = {International Journal of Engineering Science },
+ Year = {2014},
+ Pages = {203 - 223},
+ Volume = {85},
+ Abstract = {Abstract Vascular mechanics has been studied in depth
+ since the early 1970s mainly following classical concepts
+ from continuum mechanics. Yet, an important distinction of
+ blood vessels, in contrast to typical engineering
+ materials, is the continuous degradation and deposition of
+ material in these living tissues. In this paper we examine
+ mechanical consequences of such mass turnover. Motivated by
+ Lyapunov?s stability theory, we introduce the new concepts
+ of mechanobiological equilibrium and stability and
+ demonstrate that blood vessels can maintain their structure
+ and function under physiological conditions only if new
+ material is deposited at a certain prestress and the
+ vessels are both mechanically and mechanobiologically
+ stable. Moreover, we introduce the concept of
+ mechanobiological adaptivity as a third corner stone to
+ understand vascular behavior on a continuum level. We
+ demonstrate that adaptivity represents a key difference
+ between the stability of mechanobiological and typical
+ human-made systems. Based on these ideas, we suggest a
+ change of paradigm that can be illustrated by considering a
+ common arterial pathology. We suggest that aneurysms can be
+ interpreted as mechanobiological instabilities and that
+ predictions of their rupture risk should not only consider
+ the maximal diameter or wall stress, but also the
+ mechanobiological stability. A mathematical analysis of the
+ impact of the different model parameters on the so-called
+ mechanobiological stability margin, a single scalar used to
+ characterize mechanobiological stability, reveals that this
+ stability increases with the characteristic time constant
+ of mass turnover, material stiffness, and capacity for
+ stress-dependent changes in mass production. As each of
+ these parameters may be modified by appropriate drugs, the
+ theory developed in this paper may guide both prognosis and
+ the development of new therapies for arterial pathologies
+ such as aneurysms. },
+ DOI = {http://dx.doi.org/10.1016/j.ijengsci.2014.08.003},
+ ISSN = {0020-7225},
+ Keywords = {Growth},
+ timestamp = {2015/09/22},
+ URL = {http://www.sciencedirect.com/science/article/pii/S002072251400175X}
+}
+
+@Article{ cyron2014rsoc,
+ Title = {Mechanobiological stability: a new paradigm to understand
+ the enlargement of aneurysms?},
+ Author = {Cyron, C. J. and Wilson, J. S. and Humphrey, J. D.},
+ Journal = {Journal of The Royal Society Interface},
+ Year = {2014},
+ Number = {100},
+ Volume = {11},
+ Abstract = {Static and dynamic mechanical instabilities were
+ previously suggested, and then rejected, as mediators of
+ aneurysmal development, which leaves open the question of
+ the underlying mechanism. In this paper, we suggest as a
+ new paradigm the interpretation of aneurysms as
+ mechanobiological instabilities. For illustrative purposes,
+ we compare analytical calculations with computational
+ simulations of the growth and remodelling of idealized
+ fusiform abdominal aortic aneurysms and experimental and
+ clinical findings. We show that the concept of
+ mechanobiological stability is consistent with the impact
+ of risk factors such as age, smoking or diabetes on the
+ initiation and enlargement of these lesions as well as
+ adaptive processes in the healthy abdominal aorta such as
+ dilatation during ageing or in hypertension. In general,
+ high stiffness, an increased capacity for stress-mediated
+ matrix production, and slow matrix turnover all improve the
+ mechanobiological stability of blood vessels. This
+ theoretical understanding may help guide prognosis and the
+ development of future therapies for aneurysms as it enables
+ systematic ways to attenuate enlargement.},
+ DOI = {10.1098/rsif.2014.0680},
+ ISSN = {1742-5689},
+ Publisher = {The Royal Society},
+ timestamp = {2015/09/22}
+}
+
+@Misc{ d2010valvular,
+ Title = {Valvular heart disease: the next cardiac epidemic},
+ Author = {d'Arcy, JL and Prendergast, BD and Chambers, JB and Ray,
+ SG and Bridgewater, B},
+ Year = {2010},
+ Publisher = {BMJ Publishing Group Ltd}
+}
+
+@Book{ dafermos-00,
+ Address = {Berlin},
+ Author = {Dafermos, C. M.},
+ Publisher = {Springer-Verlag},
+ Title = {Hyperbolic conservation laws in continuum physics},
+ Volume = {GM 325},
+ Year = {2000}
+}
+
+###Book{ dafermos-00,
+ Address = {Berlin},
+ Author = {Dafermos, C. M.},
+ Publisher = {Springer-Verlag},
+ Title = {Hyperbolic conservation laws in continuum physics},
+ Volume = {GM 325},
+ Year = {2000}
+}
+
+@Article{ daskalopoulos2012mimi,
+ Title = {Myofibroblasts in the infarct area: concepts and
+ challenges},
+ Author = {Daskalopoulos, Evangelos P and Janssen, Ben JA and
+ Blankesteijn, W Matthijs},
+ Journal = {Microscopy and Microanalysis},
+ Year = {2012},
+ Number = {01},
+ Pages = {35--49},
+ Volume = {18},
+ File = {:daskalopoulos12.pdf:PDF},
+ Publisher = {Cambridge Univ Press},
+ timestamp = {2014/09/17}
+}
+
+@Book{ dautray,
+ Author = {Dautray, R. and Lions, J.-L.},
+ Publisher = {Masson},
+ Title = {Analyse math{\'e}matique et calcul num{\'e}rique pour les
+ sciences et les techniques},
+ Volume = {2},
+ Year = {1987}
+}
+
+###Book{ dautray,
+ Author = {Dautray, R. and Lions, J.-L.},
+ Publisher = {Masson},
+ Title = {Analyse math{\'e}matique et calcul num{\'e}rique pour les
+ sciences et les techniques},
+ Volume = {2},
+ Year = {1987}
+}
+
+@Article{ davidson-lindsay-98,
+ Annote = {mhd, aluminium},
+ Author = {Davidson, P.A and Lindsay, R.I.},
+ Journal = {J. Fluid Mech.},
+ Pages = {273--295},
+ Title = {Stability of interfacial waves in aluminium reduction
+ cells},
+ Volume = {362},
+ Year = {1998}
+}
+
+###Article{ davidson-lindsay-98,
+ Annote = {mhd, aluminium},
+ Author = {Davidson, P.A and Lindsay, R.I.},
+ Journal = {J. Fluid Mech.},
+ Pages = {273--295},
+ Title = {Stability of interfacial waves in aluminium reduction
+ cells},
+ Volume = {362},
+ Year = {1998}
+}
+
+@InProceedings{ de_hoon_4d_2014,
+ Title = {{{4D MRI}} Flow Coupled to Physics-Based Fluid Simulation
+ for Blood-Flow Visualization},
+ Volume = {33},
+ BookTitle = {Computer {{Graphics Forum}}},
+ Publisher = {{Wiley Online Library}},
+ Year = {2014},
+ Pages = {121--130},
+ Author = {de Hoon, NHLC and van Pelt, Roy and Jalba, A. and
+ Vilanova, Anna},
+ Options = {useprefix=true}
+}
+
+@Article{ degroff-2000,
+ Author = {DeGroff, C.G. and Shandas, R. and Valdes-Cruz, L.},
+ Journal = {Eur J Echocardiography},
+ Pages = {42--54},
+ Title = {Utility of the Proximal Jet Width in the Assessment of
+ Regurgitant and Stenotic Orifices - Effect of Low Velocity
+ Filter and Comparison to Actual Vena Contracta Width: an
+ {\em In Vitro} and Numerical Study},
+ Volume = {1},
+ Year = {2000}
+}
+
+###Article{ degroff-2000,
+ Author = {DeGroff, C.G. and Shandas, R. and Valdes-Cruz, L.},
+ Journal = {Eur J Echocardiography},
+ Pages = {42--54},
+ Title = {Utility of the Proximal Jet Width in the Assessment of
+ Regurgitant and Stenotic Orifices - Effect of Low Velocity
+ Filter and Comparison to Actual Vena Contracta Width: an
+ {\em In Vitro} and Numerical Study},
+ Volume = {1},
+ Year = {2000}
+}
+
+@Article{ dehart-2003,
+ Author = {De Hart, J. and Peters, G.W.M. and Schreurs, P.J.G. and
+ Baaijens, F.P.T.},
+ Journal = {Journal of Biomechanics},
+ Pages = {103--112},
+ Title = {A three-dimensional computational analysis of
+ fluid-structure interaction in the aortic valve},
+ Volume = {36},
+ Year = {2003}
+}
+
+###Article{ dehart-2003,
+ Author = {De Hart, J. and Peters, G.W.M. and Schreurs, P.J.G. and
+ Baaijens, F.P.T.},
+ Journal = {Journal of Biomechanics},
+ Pages = {103--112},
+ Title = {A three-dimensional computational analysis of
+ fluid-structure interaction in the aortic valve},
+ Volume = {36},
+ Year = {2003}
+}
+
+@Article{ dekorte-hansen-steen-11,
+ Author = {de Korte, Chris L. and Hansen, Hendrik H. G. and van der
+ Steen, Anton F. W.},
+ Title = {Vascular ultrasound for atherosclerosis imaging},
+ Volume = {1},
+ Number = {4},
+ Pages = {565-575},
+ Year = {2011},
+ DOI = {10.1098/rsfs.2011.0024},
+ Abstract = {Cardiovascular disease is a leading cause of death in the
+ Western world. Therefore, detection and quantification of
+ atherosclerotic disease is of paramount importance to
+ monitor treatment and possible prevention of acute events.
+ Vascular ultrasound is an excellent technique to assess the
+ geometry of vessel walls and plaques. The high temporal as
+ well as spatial resolution allows quantification of luminal
+ area and plaque size and volume. While carotid arteries can
+ be imaged non-invasively, scanning of coronary arteries
+ requires invasive intravascular catheters. Both techniques
+ have already demonstrated their clinical applicability.
+ Using linear array technology, detection of disease as well
+ as monitoring of pharmaceutical treatment in carotid
+ arteries are feasible. Data acquired with intravascular
+ ultrasound catheters have proved to be especially
+ beneficial in understanding the development of
+ atherosclerotic disease in coronary arteries. With the
+ introduction of vascular elastography not only the geometry
+ of plaques but also the risk for rupture of plaques might
+ be identified. These so-called vulnerable plaques are
+ frequently not flow-limiting and rupture of these plaques
+ is responsible for the majority of cerebral and cardiac
+ ischaemic events. Intravascular ultrasound elastography
+ studies have demonstrated a high correlation between high
+ strain and vulnerable plaque features, both ex vivo and in
+ vivo. Additionally, pharmaceutical intervention could be
+ monitored using this technique. Non-invasive vascular
+ elastography has recently been developed for carotid
+ applications by using compound scanning. Validation and
+ initial clinical evaluation is currently being performed.
+ Since abundance of vasa vasorum (VV) is correlated with
+ vulnerable plaque development, quantification of VV might
+ be a unique tool to even prevent this from happening. Using
+ ultrasound contrast agents, it has been demonstrated that
+ VV can be identified and quantified. Although far from
+ routine clinical application, non-invasive and
+ intravascular ultrasound VV imaging might pave the road to
+ prevent atherosclerotic disease in an early phase. This
+ paper reviews the conventional vascular ultrasound
+ techniques as well as vascular ultrasound strain and
+ vascular ultrasound VV imaging.},
+ Journal = {Interface Focus}
+}
+
+###Article{ dekorte-hansen-steen-11,
+ Author = {de Korte, Chris L. and Hansen, Hendrik H. G. and van der
+ Steen, Anton F. W.},
+ Title = {Vascular ultrasound for atherosclerosis imaging},
+ Volume = {1},
+ Number = {4},
+ Pages = {565-575},
+ Year = {2011},
+ DOI = {10.1098/rsfs.2011.0024},
+ Abstract = {Cardiovascular disease is a leading cause of death in the
+ Western world. Therefore, detection and quantification of
+ atherosclerotic disease is of paramount importance to
+ monitor treatment and possible prevention of acute events.
+ Vascular ultrasound is an excellent technique to assess the
+ geometry of vessel walls and plaques. The high temporal as
+ well as spatial resolution allows quantification of luminal
+ area and plaque size and volume. While carotid arteries can
+ be imaged non-invasively, scanning of coronary arteries
+ requires invasive intravascular catheters. Both techniques
+ have already demonstrated their clinical applicability.
+ Using linear array technology, detection of disease as well
+ as monitoring of pharmaceutical treatment in carotid
+ arteries are feasible. Data acquired with intravascular
+ ultrasound catheters have proved to be especially
+ beneficial in understanding the development of
+ atherosclerotic disease in coronary arteries. With the
+ introduction of vascular elastography not only the geometry
+ of plaques but also the risk for rupture of plaques might
+ be identified. These so-called vulnerable plaques are
+ frequently not flow-limiting and rupture of these plaques
+ is responsible for the majority of cerebral and cardiac
+ ischaemic events. Intravascular ultrasound elastography
+ studies have demonstrated a high correlation between high
+ strain and vulnerable plaque features, both ex vivo and in
+ vivo. Additionally, pharmaceutical intervention could be
+ monitored using this technique. Non-invasive vascular
+ elastography has recently been developed for carotid
+ applications by using compound scanning. Validation and
+ initial clinical evaluation is currently being performed.
+ Since abundance of vasa vasorum (VV) is correlated with
+ vulnerable plaque development, quantification of VV might
+ be a unique tool to even prevent this from happening. Using
+ ultrasound contrast agents, it has been demonstrated that
+ VV can be identified and quantified. Although far from
+ routine clinical application, non-invasive and
+ intravascular ultrasound VV imaging might pave the road to
+ prevent atherosclerotic disease in an early phase. This
+ paper reviews the conventional vascular ultrasound
+ techniques as well as vascular ultrasound strain and
+ vascular ultrasound VV imaging.},
+ URL = {http://rsfs.royalsocietypublishing.org/content/1/4/565.abstract},
+ EPrint = {http://rsfs.royalsocietypublishing.org/content/1/4/565.full.pdf+html},
+ Journal = {Interface Focus}
+}
+
+@Article{ delattre2012ir,
+ Title = {In Vivo and Cardiac Diffusion-Weighted and Magnetic
+ Resonance and Imaging},
+ Author = {Delattre, Benedicte and Viallon, Magalie and Wei,
+ Hongjiang and Zhu, Yuemin and Feiweier, Thorsten and Pai,
+ Vinay and Wen, Han and Croisille, Pierre},
+ Journal = {Investigative Radiology},
+ Year = {2012},
+ Number = {11},
+ Volume = {47},
+ File = {:Delattre2012IR.pdf:PDF},
+ Keywords = {IVIM, heart},
+ review = {ORIGINAL ARTICLE
+
+ In Vivo Cardiac Diffusion-Weighted Magnetic Resonance
+ Imaging Quantification of Normal Perfusion and Diffusion
+ Coefficients With
+
+ Intravoxel Incoherent Motion Imaging
+
+ Benedicte M.A. Delattre, PhD,* Magalie Viallon, PhD,Ã
+ Hongjiang Wei, MSc,* Yuemin M. Zhu, PhD,* Thorsten
+ Feiweier, PhD,þ Vinay M. Pai, PhD,§ Han Wen, PhD,§ and
+ Pierre Croisille, MD, PhD*||
+
+ image postprocessing with the PCATMIP algorithm. This study
+ provides new Objectives: Diffusion-weighted imaging (DWI)
+ and the introduction of the perspectives for perfusion
+ imaging without a contrast agent and demonstrates
+ intravoxel incoherent motion (IVIM) model have provided a
+ unique method that IVIM parameters can act as promising
+ tools to further characterize micro- for evaluating
+ perfusion and diffusion within a tissue without the need
+ for vascular abnormalities or dysfunction. a contrast
+ agent. Despite its relevance, cardiac DWI has thus far been
+ limited by low b values because of signal loss induced by
+ physiological motion. The Key Words: diffusion-weighted
+ imaging, heart, IVIM, PCA, goal of this study was to
+ develop a methodology for estimating IVIM para- temporal
+ MIP, in vivo meters of in vivo cardiac magnetic resonance
+ imaging using an efficient DWI
+
+ (Invest Radiol 2012;47: 662Y670) acquisition framework.
+ This was achieved by investigating various acquisi- tion
+ strategies (principal component analysis [PCA] filtering
+ and temporal maximum intensity projection [PCATMIP] and
+ single trigger delay [TD]) and fitting methods. D
+
+ iffusion-weighted imaging (DWI) has been demonstrated over
+ the last 2 decades to be a unique method for gaining access
+ to
+
+ Material and Methods: Simulations were performed on a
+ synthetic dataset the structural and physiological
+ characteristics of tissues. It has been
+
+ of diffusion-weighted signal intensity (SI) to determine
+ the fitting method extensively developed for applications
+ in the brain, notably for its
+
+ that would yield IVIM parameters with the greatest
+ accuracy. The required ability to detect stroke earlier
+ than other conventional magnetic res-
+
+ number of onance sequences can. 1 It is also largely used
+ in neurological pathol-
+
+ b values to correctly estimate IVIM parameters was also
+ investigat- ed. Breath-hold DWI scans were performed for 12
+ volunteers to collect several ogies, where fiber
+ architecture is assessed using diffusion tensor
+
+ TD values during diastole. Thirteen imaging. 2 Moreover,
+ the introduction of the intravoxel incoherent
+
+ b values ranging from 0 to 550 s/mm2
+
+ were used. The IVIM parameters derived using the data from
+ all the acquired motion (IVIM) model by Le Bihan et al 3
+ gave rise to the ability to as-
+
+ TDs (PCATMIP technique) were compared with those derived
+ using a single sess tissue perfusion and diffusion
+ parameters without the need for a
+
+ acquisition performed at an optimized diastolic time point
+ (1TD). contrast agent. Indeed, signal loss in DWI is
+ affected by mobile water molecules that are present in both
+ the intracellular and extracellular
+
+ Results: The main result of this study was that PCATMIP,
+ when combined with a fitting model that accounted for T1
+ and T2 relaxation, provided IVIM compartments, as well as
+ in blood flowing in capillaries and vessels.
+
+ parameters with less variability. However, an acquisition
+ performed with This model is therefore of wide interest for
+ nonneurologic patholo-
+
+ 1 optimized diastolic TD provided results that were as good
+ as those provided gies. For example, this technique has
+ been used to assess the differen-
+
+ using PCATMIP if the R-R variability during the acquisition
+ was sufficiently tiation state of lesions in the liver, 4
+ kidney,5 and pancreas6 and also to
+
+ low ( characterize cirrhosis. 7,8 Whereas the acquisition
+ strategy is similar
+
+ T5%). Furthermore, the use of only 9 b values (that could
+ be acquired in 2 breath-holds), instead of 13 for abdominal
+ organ applications, the data modeling and fitting meth-b
+ values (requiring 3 breath-holds), was suffi- cient to
+ determine the IVIM parameters. ods vary considerably from
+ one study to another. Recently, Lemke
+
+ Conclusions: This study demonstrates that IVIM is
+ technically feasible invivo and et al 9 proposed a
+ refinement of the DWI signal model proposed by
+
+ reports for the first time the perfusion fraction, Le Bihan
+ et al 3 that includes the T1 and T2 relaxation parameters
+
+ f, and the diffusion coefficients, D and of the blood and
+ tissue as well as the echo time (TE)/repetition timeD*, for
+ the cardiac DWI of healthy volunteers. Motion-induced
+ signal loss, which is the main problem associated with
+ cardiac DWI, could be avoided (TR) sequence parameters and
+ thus represents a new approach to
+
+ with the combined use of sliding acquisition during the
+ cardiac cycle and data postprocessing. Thus far, however,
+ very few studies have investigated cardiac
+
+ DWI, and the only study that evaluated cardiac perfusion
+ and diffu- sion parameters in vivo using IVIM was performed
+ in the canine heart.10 In fact, cardiac DWI is very
+ challenging because cardiac mo-
+
+ Received November 18, 2011; and accepted for publication,
+ after revision, tion can induce a large signal loss that,
+ until now, has limited diffusion June 25, 2012. weighting
+ to low b values. Therefore, strategies must be developed
+
+ From the *CREATIS; CNRS (UMR 5220); INSERM (U1044); INSA
+ Lyon; Uni- versiteŽ de Lyon, Lyon, France; ?Department of
+ Radiology, University Hospitals to minimize physiological
+ motion during acquisition and to sep- of Geneva, Geneva,
+ Switzerland; ?Siemens AG, Healthcare Sector, Erlangen,
+ arate signal loss due to motion from that due to diffusion.
+ Recently, Germany; §Imaging Physics Laboratory,
+ Biochemistry and Biophysics Core, Rapacchi et al11 proposed
+ a method to obtain cardiac DWI in which National Heart,
+ Lung and Blood Institute, National Institutes of Health,
+ motion-induced signal loss was minimized by PCA filtering
+ and tem- Bethesda, MD; and ||Department of Radiology,
+ Ho?pital Nord, CHU Saint- Etienne, UniversiteŽ
+ Jean-Monnet, France. poral maximum intensity projection
+ (PCATMIP) techniques. These
+
+ Conflicts of interest and sources of funding: Y. Zhu, P.
+ Croisille, and B.M.A. acquisitions were performed while the
+ subject was freely breathing Delattre received support from
+ French ANR grant. T. Feiweier is employed and therefore
+ necessitated a coregistration of the images before any by
+ Siemens AG. additional analysis. However, other potential
+ strategies include the
+
+ Supplemental digital contents are available for this
+ article. Direct URL citations appear in the printed text
+ and are provided in the HTML and PDF versions of this use
+ of respiratory triggering (PACE)
+
+ 12 or breath-holds. As a result, article on the journal?s
+ Web site (www.investigativeradiology.com). the method of
+ choice could be aligned to the technique that provides
+
+ Reprints: Pierre Croisille, MD, PhD, Service de Radiologie,
+ CHU Ho?pital Nord, the most accurate perfusion and
+ diffusion parameters. In this study, Avenue Albert Raimond,
+ 42270 Saint-Priest en Jarez, France. E-mail: croisille@ we
+ have chosen to acquire data during subject breath-holds to
+ avoid creatis.insa-lyon.fr.
+
+ Copyright * 2012 by Lippincott Williams & Wilkins the
+ potential source of signal variability resulting from the
+ coregis- ISSN: 0020-9996/12/4711Y0662 tration step. We
+ compared the IVIM parameters obtained at a single
+
+ 662 www.investigativeradiology.com Investigative Radiology
+ & Volume 47, Number 11, November 2012
+
+ Copyright © 2012 Lippincott Williams & Wilkins.
+ Unauthorized reproduction of this article is prohibited.}
+}
+
+@PhdThesis{ delfino-96,
+ Annote = {hemodynamics, vessel wall, constitutive law},
+ Author = {Delfino, A.},
+ code = {hemo},
+ School = {Ecole Polytechnique F{\'e}d{\'e}rale de Lausanne},
+ Title = {Analysis of stress field in a model of the human carotid
+ bifurcation},
+ Year = {1996}
+}
+
+###PhdThesis{ delfino-96,
+ Annote = {hemodynamics, vessel wall, constitutive law},
+ Author = {Delfino, A.},
+ code = {hemo},
+ School = {Ecole Polytechnique F{\'e}d{\'e}rale de Lausanne},
+ Title = {Analysis of stress field in a model of the human carotid
+ bifurcation},
+ Year = {1996}
+}
+
+@TechReport{ delia-mirabella-veneziani-11,
+ Author = {{D'Elia}, M. and Mirabella, L. and Passerini, T. and
+ Perego, M. and Piccinelli, M. and Vergara, C. and
+ Veneziani, A.},
+ Title = {Applications of Variational Data Assimilation in
+ Computational Hemodynamics},
+ Institution = {Emory University},
+ Year = 2011,
+ Number = {TR-2011-002}
+}
+
+###TechReport{ delia-mirabella-veneziani-11,
+ Author = {{D'Elia}, M. and Mirabella, L. and Passerini, T. and
+ Perego, M. and Piccinelli, M. and Vergara, C. and
+ Veneziani, A.},
+ Title = {Applications of Variational Data Assimilation in
+ Computational Hemodynamics},
+ Institution = {Emory University},
+ Year = 2011,
+ Number = {TR-2011-002}
+}
+
+@Article{ delia-perego-veneziani-11,
+ Title = {A variational data assimilation procedure for the
+ incompressible Navier-Stokes equations in hemodynamics},
+ Author = {D\'{}Elia, M. and Perego, M. and Veneziani, A.},
+ Journal = {Journal of Scientific Computing},
+ Pages = {1--20},
+ Year = {2011},
+ Publisher = {Springer}
+}
+
+###Article{ delia-perego-veneziani-11,
+ Title = {A variational data assimilation procedure for the
+ incompressible Navier-Stokes equations in hemodynamics},
+ Author = {D\'{}Elia, M. and Perego, M. and Veneziani, A.},
+ Journal = {Journal of Scientific Computing},
+ Pages = {1--20},
+ Year = {2011},
+ Publisher = {Springer}
+}
+
+@Article{ delia2012variational,
+ Title = {A variational data assimilation procedure for the
+ incompressible Navier-Stokes equations in hemodynamics},
+ Author = {D'Elia, Marta and Perego, Mauro and Veneziani,
+ Alessandro},
+ Journal = {Journal of Scientific Computing},
+ Volume = {52},
+ Number = {2},
+ Pages = {340--359},
+ Year = {2012},
+ Publisher = {Springer}
+}
+
+@Article{ delia2013uncertainty,
+ Title = {Uncertainty quantification for data assimilation in a
+ steady incompressible Navier-Stokes problem},
+ Author = {D'Elia, Marta and Veneziani, Alessandro},
+ Journal = {ESAIM: Mathematical Modelling and Numerical Analysis},
+ Volume = {47},
+ Number = {4},
+ Pages = {1037--1057},
+ Year = {2013},
+ Publisher = {EDP Sciences}
+}
+
+###Article{ delia2013uncertainty,
+ Title = {Uncertainty quantification for data assimilation in a
+ steady incompressible Navier-Stokes problem},
+ Author = {DâElia, Marta and Veneziani, Alessandro},
+ Journal = {ESAIM: Mathematical Modelling and Numerical Analysis},
+ Volume = {47},
+ Number = {4},
+ Pages = {1037--1057},
+ Year = {2013},
+ Publisher = {EDP Sciences}
+}
+
+@Article{ delia_uncertainty_2013,
+ Title = {Uncertainty Quantification for Data Assimilation in a
+ Steady Incompressible {{Navier}}-{{Stokes}} Problem},
+ Volume = {47},
+ URL = {http://www.esaim-m2an.org/articles/m2an/abs/2013/04/m2an120056/m2an120056.html},
+ Number = {4},
+ JournalTitle = {ESAIM: Mathematical Modelling and Numerical Analysis},
+ URLDate = {2016-11-18},
+ Year = {2013},
+ Pages = {1037--1057},
+ Author = {D'Elia, Marta and Veneziani, Alessandro}
+}
+
+@Article{ delia_variational_2012,
+ langid = {english},
+ Title = {A {{Variational Data Assimilation Procedure}} for the
+ {{Incompressible Navier}}-{{Stokes Equations}} in
+ {{Hemodynamics}}},
+ Volume = {52},
+ ISSN = {0885-7474, 1573-7691},
+ URL = {http://link.springer.com/10.1007/s10915-011-9547-6},
+ DOI = {10.1007/s10915-011-9547-6},
+ Number = {2},
+ JournalTitle = {Journal of Scientific Computing},
+ URLDate = {2016-11-21},
+ Year = {2012-08},
+ Pages = {340-359},
+ Author = {D'Elia, Marta and Perego, Mauro and Veneziani,
+ Alessandro}
+}
+
+@InProceedings{ delles_influence_2010,
+ Title = {Influence of Imaging Quality on Magnetic Resonance-Based
+ Pressure Gradient Measurements},
+ BookTitle = {Medical {{Imaging}} 2010: {{Biomedical Applications}} in
+ {{Molecular}}, {{Structural}}, and {{Functional Imaging}}},
+ Author = {Delles, Michael and Rengier, Fabian and Ley, Sebastian and
+ von {Tengg-Kobligk}, Hendrik and Kauczor, Hans-Ulrich and
+ Unterhinninghofen, Roland and Dillmann, R{\"u}diger},
+ Year = {2010},
+ Month = mar,
+ Volume = {7626},
+ Pages = {762624},
+ Publisher = {{International Society for Optics and Photonics}},
+ DOI = {10.1117/12.844160},
+ Abstract = {In cardiovascular diagnostics, the knowledge of blood
+ pressure is essential for the physician. Nowadays, blood
+ pressures are usually obtained by catheter measurements or
+ sphygmomanometric methods. These techniques suffer from
+ different drawbacks in terms of invasiveness, observable
+ vessels and the resolution of the pressure values,
+ respectively. Magnetic resonance imaging (MRI) offers a
+ promising approach to establish a method for blood pressure
+ measurements that is able to overcome these difficulties.
+ Phase-contrast MRI is used to acquire velocity-encoded
+ data. Fluid pressure gradients can be derived from the
+ measured velocities using the Navier-Stokes equations.
+ Unfortunately, this technique is known to suffer from a
+ strong sensitivity to imaging quality. Especially the low
+ signal-to-noise ratios (SNR) of phase contrast MRI data
+ combined with the limited spatial and temporal resolution
+ could severely reduce the reliability of computations. In
+ this paper, we analyze computations of blood pressure
+ gradients based on phase contrast MRI measurements of
+ steady and pulsatile flow in a phantom. The influence of
+ image quality of the velocity-encoded data as well as of
+ different segmentation techniques is evaluated. In case of
+ steady flow, the pressure gradient values computed via
+ Navier-Stokes equations show good agreement with
+ theoretical values if physical a-priori knowledge is
+ incorporated. If a pulsatile aortic flow profile is
+ applied, the computed pressure gradients generally match
+ catheter measurements well. Nevertheless, an
+ underestimation of pressure gradient peaks is observed.
+ Different segmentation techniques influence the size of
+ root mean squared errors between computation and
+ measurement as well as their reduction by the use of higher
+ SNRs.}
+}
+
+@InProceedings{ delles_influence_2010-1,
+ Title = {Influence of Imaging Quality on Magnetic Resonance-Based
+ Pressure Gradient Measurements},
+ Volume = {7626},
+ URL = {https://www.spiedigitallibrary.org/conference-proceedings-of-spie/7626/762624/Influence-of-imaging-quality-on-magnetic-resonance-based-pressure-gradient/10.1117/12.844160.short},
+ DOI = {10.1117/12.844160},
+ Abstract = {In cardiovascular diagnostics, the knowledge of blood
+ pressure is essential for the physician. Nowadays, blood
+ pressures are usually obtained by catheter measurements or
+ sphygmomanometric methods. These techniques suffer from
+ different drawbacks in terms of invasiveness, observable
+ vessels and the resolution of the pressure values,
+ respectively. Magnetic resonance imaging (MRI) offers a
+ promising approach to establish a method for blood pressure
+ measurements that is able to overcome these difficulties.
+ Phase-contrast MRI is used to acquire velocity-encoded
+ data. Fluid pressure gradients can be derived from the
+ measured velocities using the Navier-Stokes equations.
+ Unfortunately, this technique is known to suffer from a
+ strong sensitivity to imaging quality. Especially the low
+ signal-to-noise ratios (SNR) of phase contrast MRI data
+ combined with the limited spatial and temporal resolution
+ could severely reduce the reliability of computations. In
+ this paper, we analyze computations of blood pressure
+ gradients based on phase contrast MRI measurements of
+ steady and pulsatile flow in a phantom. The influence of
+ image quality of the velocity-encoded data as well as of
+ different segmentation techniques is evaluated. In case of
+ steady flow, the pressure gradient values computed via
+ Navier-Stokes equations show good agreement with
+ theoretical values if physical a-priori knowledge is
+ incorporated. If a pulsatile aortic flow profile is
+ applied, the computed pressure gradients generally match
+ catheter measurements well. Nevertheless, an
+ underestimation of pressure gradient peaks is observed.
+ Different segmentation techniques influence the size of
+ root mean squared errors between computation and
+ measurement as well as their reduction by the use of higher
+ SNRs.},
+ EventTitle = {Medical {{Imaging}} 2010: {{Biomedical Applications}} in
+ {{Molecular}}, {{Structural}}, and {{Functional Imaging}}},
+ BookTitle = {Medical {{Imaging}} 2010: {{Biomedical Applications}} in
+ {{Molecular}}, {{Structural}}, and {{Functional Imaging}}},
+ Publisher = {{International Society for Optics and Photonics}},
+ URLDate = {2019-03-01},
+ Year = {2010-03-09},
+ Pages = {762624},
+ Author = {Delles, Michael and Rengier, Fabian and Ley, Sebastian and
+ von Tengg-Kobligk, Hendrik and Kauczor, Hans-Ulrich and
+ Unterhinninghofen, Roland and Dillmann, Rüdiger}
+}
+
+@PhdThesis{ delmas-81,
+ Annote = {mhd, interface},
+ Author = {Delmas, M.},
+ code = {mhd32},
+ School = {Universit{\'e} Paris-Sud},
+ Title = {Probl{\`e}me magn{\'e}tohydrodynamique li{\'e}s {\`a}
+ l'interface de deux fluides},
+ Year = {1981}
+}
+
+###PhdThesis{ delmas-81,
+ Annote = {mhd, interface},
+ Author = {Delmas, M.},
+ code = {mhd32},
+ School = {Universit{\'e} Paris-Sud},
+ Title = {Probl{\`e}me magn{\'e}tohydrodynamique li{\'e}s {\`a}
+ l'interface de deux fluides},
+ Year = {1981}
+}
+
+@Article{ denisova,
+ Author = {Denisova, I.V.},
+ Journal = {Acta Applicandae Mathematicae},
+ Pages = {31-40},
+ Title = {Problem of the motion of two viscous incompressible fluids
+ separated by a closed free interface},
+ Volume = {37},
+ Year = {1994}
+}
+
+###Article{ denisova,
+ Author = {Denisova, I.V.},
+ Journal = {Acta Applicandae Mathematicae},
+ Pages = {31-40},
+ Title = {Problem of the motion of two viscous incompressible fluids
+ separated by a closed free interface},
+ Volume = {37},
+ Year = {1994}
+}
+
+@Article{ denisova2,
+ Author = {Denisova, I.V. and Solonnikov, V.A.},
+ Journal = {St. Petersbg. Math. J.},
+ Number = {5},
+ Pages = {755-786},
+ Title = {Classical solvability of the problem on the motion of two
+ viscous incompressible fluids},
+ Volume = {7},
+ Year = {1996}
+}
+
+###Article{ denisova2,
+ Author = {Denisova, I.V. and Solonnikov, V.A.},
+ Journal = {St. Petersbg. Math. J.},
+ Number = {5},
+ Pages = {755-786},
+ Title = {Classical solvability of the problem on the motion of two
+ viscous incompressible fluids},
+ Volume = {7},
+ Year = {1996}
+}
+
+@Article{ deparis-discacciati-fourestey-quarteroni-06,
+ Author = {Deparis, S. and Discacciati, M. and Fourestey, G. and
+ Quarteroni, A.},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Number = {41-43},
+ Pages = {5797--5812},
+ Title = {Fluid-structure algorithms based on {S}teklov-{P}oincar\'e
+ operators},
+ Volume = {195},
+ Year = {2006}
+}
+
+###Article{ deparis-discacciati-fourestey-quarteroni-06,
+ Author = {Deparis, S. and Discacciati, M. and Fourestey, G. and
+ Quarteroni, A.},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Number = {41-43},
+ Pages = {5797--5812},
+ Title = {Fluid-structure algorithms based on {S}teklov-{P}oincar\'e
+ operators},
+ Volume = {195},
+ Year = {2006}
+}
+
+@InProceedings{ deparis-discacciati-quarteroni-04,
+ Author = {Deparis, S. and Discacciati, M. and Quarteroni, A.},
+ BookTitle = {Proceedings of the Third International Conference on
+ Computational Fluid Dynamics (ICCFD3)},
+ Title = {A domain decomposition framework for fluid-structure
+ interaction problems},
+ Year = {2004}
+}
+
+###InProceedings{ deparis-discacciati-quarteroni-04,
+ Author = {Deparis, S. and Discacciati, M. and Quarteroni, A.},
+ BookTitle = {Proceedings of the Third International Conference on
+ Computational Fluid Dynamics (ICCFD3)},
+ Title = {A domain decomposition framework for fluid-structure
+ interaction problems},
+ Year = {2004}
+}
+
+@Article{ deparis-fernandez-formaggia-03,
+ Author = {Deparis, S. and Fern{\'a}ndez, M.A. and Formaggia, L.},
+ fjournal = {M2AN. Mathematical Modelling and Numerical Analysis},
+ ISSN = {0764-583X},
+ Journal = {M2AN Math. Model. Numer. Anal.},
+ mrclass = {74F10 (65M99 76D05 76M25)},
+ mrnumber = {MR2018432 (2004i:74035)},
+ Number = {4},
+ Pages = {601--616},
+ Title = {Acceleration of a fixed point algorithm for
+ fluid-structure interaction using transpiration
+ conditions},
+ Volume = {37},
+ Year = {2003}
+}
+
+###Article{ deparis-fernandez-formaggia-03,
+ Author = {Deparis, S. and Fern{\'a}ndez, M.A. and Formaggia, L.},
+ fjournal = {M2AN. Mathematical Modelling and Numerical Analysis},
+ ISSN = {0764-583X},
+ Journal = {M2AN Math. Model. Numer. Anal.},
+ mrclass = {74F10 (65M99 76D05 76M25)},
+ mrnumber = {MR2018432 (2004i:74035)},
+ Number = {4},
+ Pages = {601--616},
+ Title = {Acceleration of a fixed point algorithm for
+ fluid-structure interaction using transpiration
+ conditions},
+ Volume = {37},
+ Year = {2003}
+}
+
+@InProceedings{ deparis-fernandez-formaggia-nobile-03,
+ Author = {Deparis, S. and Fern{\'a}ndez, M.A. and Formaggia, L. and
+ Nobile, F.},
+ BookTitle = {Second M.I.T. Conference on Computational Fluid and Solid
+ Mechanics},
+ code = {fsi9},
+ Editor = {K.J. Bathe},
+ page = {1307-1311},
+ Publisher = {Elsevier},
+ Title = {Acceleration of a fixed point algorithm for
+ fluid-structure interaction using transpiration
+ conditions},
+ Year = {2003}
+}
+
+###InProceedings{ deparis-fernandez-formaggia-nobile-03,
+ Author = {Deparis, S. and Fern{\'a}ndez, M.A. and Formaggia, L. and
+ Nobile, F.},
+ BookTitle = {Second M.I.T. Conference on Computational Fluid and Solid
+ Mechanics},
+ code = {fsi9},
+ Editor = {K.J. Bathe},
+ page = {1307-1311},
+ Publisher = {Elsevier},
+ Title = {Acceleration of a fixed point algorithm for
+ fluid-structure interaction using transpiration
+ conditions},
+ Year = {2003}
+}
+
+@Unpublished{ deparis-gerbeau-vasseur,
+ Author = {Deparis, S. and Gerbeau, J-F. and Vasseur, X.},
+ Note = {RR INRIA No 5277, 2004},
+ Title = {{A Dynamic Preconditioner for Newton-Krylov Algorithms.
+ Application to Fluid-Structure Interaction}}
+}
+
+###Unpublished{ deparis-gerbeau-vasseur,
+ Author = {Deparis, S. and Gerbeau, J-F. and Vasseur, X.},
+ Note = {RR INRIA No 5277, 2004},
+ Title = {{A Dynamic Preconditioner for Newton-Krylov Algorithms.
+ Application to Fluid-Structure Interaction}}
+}
+
+@Article{ descloux-flueck-romerio-91,
+ Author = {Descloux, J. and Flueck, M. and Romerio, M.V.},
+ Journal = {Magnetohydrodynamics in Process Metallurgy},
+ Pages = {107-110},
+ Publisher = {The Minerals, Metals & Materials Society},
+ Title = {Modelling for instabilities in Hall-Heroult cells :
+ mathematical and numerical aspects},
+ Year = {1991}
+}
+
+###Article{ descloux-flueck-romerio-91,
+ Author = {Descloux, J. and Flueck, M. and Romerio, M.V.},
+ Journal = {Magnetohydrodynamics in Process Metallurgy},
+ Pages = {107-110},
+ Publisher = {The Minerals, Metals & Materials Society},
+ Title = {Modelling for instabilities in Hall-Heroult cells :
+ mathematical and numerical aspects},
+ Year = {1991}
+}
+
+@Article{ descloux-flueck-romerio-91b,
+ Author = {Descloux, J. and Flueck, M. and Romerio, M.V.},
+ Journal = {Light Metal},
+ Pages = {275-281},
+ Title = {Stability in aluminium reduction cells : a spectral
+ problem solved by an iterative procedure},
+ Year = {1994}
+}
+
+###Article{ descloux-flueck-romerio-91b,
+ Author = {Descloux, J. and Flueck, M. and Romerio, M.V.},
+ Journal = {Light Metal},
+ Pages = {275-281},
+ Title = {Stability in aluminium reduction cells : a spectral
+ problem solved by an iterative procedure},
+ Year = {1994}
+}
+
+@Article{ descloux-frosio-flueck-89,
+ Author = {Descloux, J. and Frosio, R. and Fl{\"u}ck, M.},
+ code = {mob2},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Number = {3},
+ Pages = {215--226},
+ Title = {A two fluids stationary free boundary problem},
+ Volume = {77},
+ Year = {1989}
+}
+
+###Article{ descloux-frosio-flueck-89,
+ Author = {Descloux, J. and Frosio, R. and Fl{\"u}ck, M.},
+ code = {mob2},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Number = {3},
+ Pages = {215--226},
+ Title = {A two fluids stationary free boundary problem},
+ Volume = {77},
+ Year = {1989}
+}
+
+@Article{ descloux-jaccard-romerio-91,
+ Annote = {mhd, aluminium, long time, stability},
+ Author = {Descloux, J. and Jaccard, Y. and Romerio, M.V.},
+ code = {mhd23},
+ Journal = {Journal of Computational and Applied Mathematics},
+ Pages = {77-85},
+ Title = {A bidimensional stability result for aluminium
+ electrolytic cells},
+ Volume = {38},
+ Year = {1991}
+}
+
+###Article{ descloux-jaccard-romerio-91,
+ Annote = {mhd, aluminium, long time, stability},
+ Author = {Descloux, J. and Jaccard, Y. and Romerio, M.V.},
+ code = {mhd23},
+ Journal = {Journal of Computational and Applied Mathematics},
+ Pages = {77-85},
+ Title = {A bidimensional stability result for aluminium
+ electrolytic cells},
+ Volume = {38},
+ Year = {1991}
+}
+
+@Article{ desjardins,
+ Author = {Desjardins, B.},
+ Journal = {Arch. Rat. Mech. Anal.},
+ Pages = {135-158},
+ Title = {Regularity results for the two dimensional multiphase
+ viscous flows},
+ Volume = {137},
+ Year = {1997}
+}
+
+###Article{ desjardins,
+ Author = {Desjardins, B.},
+ Journal = {Arch. Rat. Mech. Anal.},
+ Pages = {135-158},
+ Title = {Regularity results for the two dimensional multiphase
+ viscous flows},
+ Volume = {137},
+ Year = {1997}
+}
+
+@Article{ desjardins-le-bris-98,
+ Author = {Desjardins, B. and Le Bris, C.},
+ Journal = {Differential Integral Equations},
+ Number = {3},
+ Pages = {377--394},
+ Title = {Remarks on a nonhomogeneous model of
+ magnetohydrodynamics},
+ Volume = {11},
+ Year = {1998}
+}
+
+###Article{ desjardins-le-bris-98,
+ Author = {Desjardins, B. and Le Bris, C.},
+ Journal = {Differential Integral Equations},
+ Number = {3},
+ Pages = {377--394},
+ Title = {Remarks on a nonhomogeneous model of
+ magnetohydrodynamics},
+ Volume = {11},
+ Year = {1998}
+}
+
+@Article{ devault_blood_2008,
+ Title = {Blood Flow in the Circle of {{Willis}}: Modeling and
+ Calibration},
+ Volume = {7},
+ ShortTitle = {Blood Flow in the Circle of {{Willis}}},
+ Number = {2},
+ JournalTitle = {Multiscale Modeling \& Simulation},
+ Year = {2008},
+ Pages = {888--909},
+ Author = {DeVault, Kristen and Gremaud, Pierre A. and Novak, Vera
+ and Olufsen, Mette S. and Vernieres, Guillaume and Zhao,
+ Peng}
+}
+
+@PhdThesis{ dominguez-82,
+ Annote = {mhd, finite element},
+ Author = {Dominguez de la Rasilla, J.-M.},
+ code = {mhd30},
+ School = {Universit{\'e} de Paris VI},
+ Title = {Etude des {\'e}quations de la magn{\'e}tohydrodynamique
+ stationnaires et de leur approximation par {\'e}l{\'e}ments
+ finis},
+ Type = {Th{\`e}se},
+ Year = {1982}
+}
+
+###PhdThesis{ dominguez-82,
+ Annote = {mhd, finite element},
+ Author = {Dominguez de la Rasilla, J.-M.},
+ code = {mhd30},
+ School = {Universit{\'e} de Paris VI},
+ Title = {Etude des {\'e}quations de la magn{\'e}tohydrodynamique
+ stationnaires et de leur approximation par {\'e}l{\'e}ments
+ finis},
+ Type = {Th{\`e}se},
+ Year = {1982}
+}
+
+@Article{ donati2015non,
+ Title = {Non-invasive pressure difference estimation from
+ {PC}-{MRI} using the work-energy equation},
+ Author = {Donati, Fabrizio and Figueroa, C Alberto and Smith,
+ Nicolas P and Lamata, Pablo and Nordsletten, David A},
+ Journal = {Medical Image Analysis},
+ Volume = {26},
+ Number = {1},
+ Pages = {159--172},
+ Year = {2015},
+ Publisher = {Elsevier}
+}
+
+###Article{ donati2015non,
+ Title = {Non-invasive pressure difference estimation from
+ {PC}-{MRI} using the work-energy equation},
+ Author = {Donati, Fabrizio and Figueroa, C Alberto and Smith,
+ Nicolas P and Lamata, Pablo and Nordsletten, David A},
+ Journal = {Medical Image Analysis},
+ Volume = {26},
+ Number = {1},
+ Pages = {159--172},
+ Year = {2015},
+ Publisher = {Elsevier}
+}
+
+@Article{ donati2016circulation,
+ Title = {Beyond Bernoulli: improving the accuracy and precision of
+ non-invasive estimation of peak pressure},
+ Author = {Donati, F. and Myerson, S. and Bissel, M. and Smith, N.
+ and Neubauer, S. and Monaghan, M. and Nordsletten, D.
+ Lamata, P.},
+ Journal = {Circulation Cardiovascular Imaging},
+ Year = {2016},
+ Note = {To appear}
+}
+
+@Article{ donati_beyond_2017,
+ langid = {english},
+ Title = {Beyond {{Bernoulli}}: {{Improving}} the {{Accuracy}} and
+ {{Precision}} of {{Noninvasive Estimation}} of {{Peak
+ Pressure Drops}}},
+ Volume = {10},
+ ISSN = {1941-9651, 1942-0080},
+ URL = {https://www.ahajournals.org/doi/10.1161/CIRCIMAGING.116.005207},
+ DOI = {10.1161/CIRCIMAGING.116.005207},
+ ShortTitle = {Beyond {{Bernoulli}}},
+ Number = {1},
+ JournalTitle = {Circulation: Cardiovascular Imaging},
+ URLDate = {2019-02-18},
+ Date = {2017-01},
+ Author = {Donati, Fabrizio and Myerson, Saul and Bissell, Malenka M.
+ and Smith, Nicolas P. and Neubauer, Stefan and Monaghan,
+ Mark J. and Nordsletten, David A. and Lamata, Pablo}
+}
+
+###Article{ donati_beyond_2017,
+ langid = {english},
+ Title = {Beyond {{Bernoulli}}: {{Improving}} the {{Accuracy}} and
+ {{Precision}} of {{Noninvasive Estimation}} of {{Peak
+ Pressure Drops}}},
+ Volume = {10},
+ ISSN = {1941-9651, 1942-0080},
+ URL = {https://www.ahajournals.org/doi/10.1161/CIRCIMAGING.116.005207},
+ DOI = {10.1161/CIRCIMAGING.116.005207},
+ ShortTitle = {Beyond {{Bernoulli}}},
+ Number = {1},
+ JournalTitle = {Circulation: Cardiovascular Imaging},
+ URLDate = {2019-02-18},
+ Year = {2017-01},
+ Author = {Donati, Fabrizio and Myerson, Saul and Bissell, Malenka M.
+ and Smith, Nicolas P. and Neubauer, Stefan and Monaghan,
+ Mark J. and Nordsletten, David A. and Lamata, Pablo}
+}
+
+@Article{ donati_non-invasive_2015,
+ Title = {Non-Invasive Pressure Difference Estimation from
+ {{PC}}-{{MRI}} Using the Work-Energy Equation},
+ Volume = {26},
+ URL = {http://www.sciencedirect.com/science/article/pii/S1361841515001371},
+ Number = {1},
+ JournalTitle = {Medical image analysis},
+ URLDate = {2016-11-23},
+ Year = {2015},
+ Pages = {159--172},
+ Author = {Donati, Fabrizio and Figueroa, C. Alberto and Smith,
+ Nicolas P. and Lamata, Pablo and Nordsletten, David A.}
+}
+
+@Article{ donea-giuliani-halleux-82,
+ Author = {Don{\'e}a, J. and Giuliani, S. and Halleux, J. P.},
+ Journal = {Comp. Meth. Appl. Mech. Engng.},
+ Pages = {689--723},
+ Title = {An arbitrary {Lagrangian-Eulerian} finite element method
+ for transient dynamic fluid-structure interactions},
+ Year = {1982}
+}
+
+###Article{ donea-giuliani-halleux-82,
+ Author = {Don{\'e}a, J. and Giuliani, S. and Halleux, J. P.},
+ Journal = {Comp. Meth. Appl. Mech. Engng.},
+ Pages = {689--723},
+ Title = {An arbitrary {Lagrangian-Eulerian} finite element method
+ for transient dynamic fluid-structure interactions},
+ Year = {1982}
+}
+
+@Unpublished{ doorly-sherwin-franke-peiro-01,
+ Author = {Doorly, D.J. and Sherwin, S.J. and Franke, P.T. and
+ Peir\'{o}, J.},
+ Note = {Special issue on CFD in Computer Methods in Biomechanics
+ and Biomedical Engineering},
+ Title = {Vortical flow structure identification and flow transport
+ in arteries},
+ Year = {2001}
+}
+
+###Unpublished{ doorly-sherwin-franke-peiro-01,
+ Author = {Doorly, D.J. and Sherwin, S.J. and Franke, P.T. and
+ Peir\'{o}, J.},
+ Note = {Special issue on CFD in Computer Methods in Biomechanics
+ and Biomedical Engineering},
+ Title = {Vortical flow structure identification and flow transport
+ in arteries},
+ Year = {2001}
+}
+
+@Article{ dorn2009nature,
+ Title = {Novel pharmacotherapies to abrogate postinfarction
+ ventricular remodeling},
+ Author = {Dorn, Gerald W},
+ Journal = {Nature Reviews Cardiology},
+ Year = {2009},
+ Number = {4},
+ Pages = {283--291},
+ Volume = {6},
+ File = {dorn09.pdf:dorn09.pdf:PDF},
+ Publisher = {Nature Publishing Group},
+ timestamp = {2015/09/20}
+}
+
+@Article{ dou2002mrm,
+ Title = {Cardiac diffusion {MRI} without motion effects},
+ Author = {Dou, Jiangang and Reese, Timothy G. and Tseng, Wen-Yih I.
+ and Wedeen, Van J.},
+ Journal = {Magnetic Resonance in Medicine},
+ Year = {2002},
+ Month = jul,
+ Number = {1},
+ Pages = {105--114},
+ Volume = {48},
+ Abstract = {We present a method for diffusion tensor MRI in the
+ beating heart that is insensitive to cardiac motion and
+ strain. Using a stimulated echo pulse sequence with two
+ electrocardiogram (ECG) triggers, diffusion-encoding
+ bipolar gradient pulses are applied at identical phases in
+ consecutive cardiac cycles. In this experiment, diffusion
+ is encoded at a single phase in the cardiac cycle of less
+ than 30 ms in duration. This encoding produces no phase
+ shifts for periodic motion and is independent of
+ intervening strains. Studies in a gel phantom with cyclic
+ deformation confirm that by using this sequence we can map
+ the diffusion tensor free of effects of cyclic motion. In
+ normal human subjects, myocardial diffusion eigenvalues
+ measured with the present method showed no significant
+ change between acquisitions encoded at maximum contractile
+ velocity (peak) vs. at myocardial standstill (end-systole),
+ demonstrating motion independence of in vivo diffusion
+ measurements. Diffusion tensor images acquired with the
+ present method agree with registered data acquired with a
+ previous cardiac diffusion MRI method that was shown to be
+ valid in the normal heart, strongly supporting the validity
+ of MRI diffusion measurement in the beating heart.
+ Myocardial sheet and fiber dynamics measured during systole
+ showed that normal human myocardial sheet orientations tilt
+ toward the radial during systole, and fiber orientations
+ tilt toward the longitudinal, in qualitative agreement with
+ previous invasive studies in canines. These results
+ demonstrate the technique's ability to measure myocardial
+ diffusion accurately at any point in the cardiac cycle free
+ of measurable motion effect, as if the heart were frozen at
+ the point of acquisition. Magn Reson Med
+ 48:105{\textendash}114, 2002. {\textcopyright} 2002
+ Wiley-Liss, Inc.},
+ copyright = {Copyright {\textcopyright} 2002 Wiley-Liss, Inc.},
+ DOI = {10.1002/mrm.10188},
+ ISSN = {1522-2594},
+ Language = {en},
+ owner = {david},
+ timestamp = {2015-05-28 17:38:21},
+ URL = {http://onlinelibrary.wiley.com/doi/10.1002/mrm.10188/abstract},
+ URLDate = {2015-05-28}
+}
+
+@Article{ douglas-wang-89,
+ Author = {Douglas, J. and Wang, J.},
+ Journal = {Math. of Comp.},
+ Number = {186},
+ Pages = {495-508},
+ Title = {An absolutely stabilized finite element method for the
+ {Stokes} problem},
+ Volume = {52},
+ Year = {1989}
+}
+
+###Article{ douglas-wang-89,
+ Author = {Douglas, J. and Wang, J.},
+ Journal = {Math. of Comp.},
+ Number = {186},
+ Pages = {495-508},
+ Title = {An absolutely stabilized finite element method for the
+ {Stokes} problem},
+ Volume = {52},
+ Year = {1989}
+}
+
+@Article{ douglas20161,
+ Title = {1-year outcomes of FFRCT-guided care in patients with
+ suspected coronary disease: the PLATFORM study},
+ Author = {Douglas, Pamela S and De Bruyne, Bernard and Pontone,
+ Gianluca and Patel, Manesh R and Norgaard, Bjarne L and
+ Byrne, Robert A and Curzen, Nick and Purcell, Ian and
+ Gutberlet, Matthias and Rioufol, Gilles and others},
+ Journal = {Journal of the American College of Cardiology},
+ Volume = {68},
+ Number = {5},
+ Pages = {435--445},
+ Year = {2016},
+ Publisher = {Journal of the American College of Cardiology}
+}
+
+@Article{ doyley-12,
+ Author = {Doyley, M.M. },
+ Title = {Model-based elastography: a survey of approaches to the
+ inverse elasticity problem},
+ Journal = {Physics in Medicine and Biology},
+ Volume = {57},
+ Number = {3},
+ Pages = {R35},
+ Year = {2012},
+ Abstract = {Elastography is emerging as an imaging modality that can
+ distinguish normal versus diseased tissues via their
+ biomechanical properties. This paper reviews current
+ approaches to elastography in three areasâquasi-static,
+ harmonic and transientâand describes inversion schemes
+ for each elastographic imaging approach. Approaches include
+ first-order approximation methods; direct and iterative
+ inversion schemes for linear elastic; isotropic materials
+ and advanced reconstruction methods for recovering
+ parameters that characterize complex mechanical behavior.
+ The paper's objective is to document efforts to develop
+ elastography within the framework of solving an inverse
+ problem, so that elastography may provide reliable
+ estimates of shear modulus and other mechanical parameters.
+ We discuss issues that must be addressed if model-based
+ elastography is to become the prevailing approach to
+ quasi-static, harmonic and transient elastography: (1)
+ developing practical techniques to transform the ill-posed
+ problem with a well-posed one; (2) devising better forward
+ models to capture the complex mechanical behavior of soft
+ tissues and (3) developing better test procedures to
+ evaluate the performance of modulus elastograms.}
+}
+
+###Article{ doyley-12,
+ Author = {Doyley, M.M. },
+ Title = {Model-based elastography: a survey of approaches to the
+ inverse elasticity problem},
+ Journal = {Physics in Medicine and Biology},
+ Volume = {57},
+ Number = {3},
+ Pages = {R35},
+ URL = {http://stacks.iop.org/0031-9155/57/i=3/a=R35},
+ Year = {2012},
+ Abstract = {Elastography is emerging as an imaging modality that can
+ distinguish normal versus diseased tissues via their
+ biomechanical properties. This paper reviews current
+ approaches to elastography in three areasâquasi-static,
+ harmonic and transientâand describes inversion schemes
+ for each elastographic imaging approach. Approaches include
+ first-order approximation methods; direct and iterative
+ inversion schemes for linear elastic; isotropic materials
+ and advanced reconstruction methods for recovering
+ parameters that characterize complex mechanical behavior.
+ The paper's objective is to document efforts to develop
+ elastography within the framework of solving an inverse
+ problem, so that elastography may provide reliable
+ estimates of shear modulus and other mechanical parameters.
+ We discuss issues that must be addressed if model-based
+ elastography is to become the prevailing approach to
+ quasi-static, harmonic and transient elastography: (1)
+ developing practical techniques to transform the ill-posed
+ problem with a well-posed one; (2) devising better forward
+ models to capture the complex mechanical behavior of soft
+ tissues and (3) developing better test procedures to
+ evaluate the performance of modulus elastograms.}
+}
+
+@Article{ draney-taylor-etal-04,
+ Author = {Draney, M.T. and Arko, F.R. and Alley, M.T. and Markl, M.
+ and Herfkens, R.J. and Pelc, R.J. and Zarins, C.K. and
+ Taylor, C.A.},
+ date-added = {2009-03-10 12:06:21 -0700},
+ date-modified = {2009-03-10 12:07:39 -0700},
+ Journal = {{Magnetic Resonance in Medicine}},
+ Pages = {286-295},
+ Title = {Quantification of Vessel Wall Motion and Cyclic Strain
+ Using Cine Phase Contrast MRI: In Vivo Validation in the
+ Porcine Aorta},
+ Volume = {52},
+ Year = {2004}
+}
+
+###Article{ draney-taylor-etal-04,
+ Author = {Draney, M.T. and Arko, F.R. and Alley, M.T. and Markl, M.
+ and Herfkens, R.J. and Pelc, R.J. and Zarins, C.K. and
+ Taylor, C.A.},
+ date-added = {2009-03-10 12:06:21 -0700},
+ date-modified = {2009-03-10 12:07:39 -0700},
+ Journal = {Magnetic Resonance in Medicine},
+ Pages = {286-295},
+ Title = {Quantification of Vessel Wall Motion and Cyclic Strain
+ Using Cine Phase Contrast MRI: In Vivo Validation in the
+ Porcine Aorta},
+ Volume = {52},
+ Year = {2004}
+}
+
+@Article{ durlofsky-brady-87,
+ Author = {Durlofsky, L. and Brady, J-F.},
+ code = {por9},
+ Journal = {Phys. Fluid},
+ Number = {11},
+ Pages = {3329-3341},
+ Title = {Analysis of the Brinkman equation as a model for flow in
+ porous media},
+ Volume = {30},
+ Year = {1987}
+}
+
+@Book{ duvaut-lions-72,
+ Author = {Duvaut, G. and Lions, J.-L.},
+ Publisher = {Dunod},
+ Title = {Les in{\'e}quations en m{\'e}canique et en physique},
+ Year = {1972}
+}
+
+###Book{ duvaut-lions-72,
+ Author = {Duvaut, G. and Lions, J.-L.},
+ Publisher = {Dunod},
+ Title = {Les in{\'e}quations en m{\'e}canique et en physique},
+ Year = {1972}
+}
+
+@Article{ duvaut-lions-72b,
+ Annote = {mhd, bingham, existence},
+ Author = {Duvaut, G. and Lions, J.-L.},
+ code = {mhd15},
+ Journal = {Arch. Rat. Mech. Anal.},
+ Pages = {241-279},
+ Title = {In{\'e}quations en thermo{\'e}lasticit{\'e} et
+ magn{\'e}tohydrodynamique},
+ Volume = {46},
+ Year = {1972}
+}
+
+###Article{ duvaut-lions-72b,
+ Annote = {mhd, bingham, existence},
+ Author = {Duvaut, G. and Lions, J.-L.},
+ code = {mhd15},
+ Journal = {Arch. Rat. Mech. Anal.},
+ Pages = {241-279},
+ Title = {In{\'e}quations en thermo{\'e}lasticit{\'e} et
+ magn{\'e}tohydrodynamique},
+ Volume = {46},
+ Year = {1972}
+}
+
+@InProceedings{ dwight-10,
+ Title = {Bayesian inference for data assimilation using
+ Least-Squares Finite Element methods},
+ Author = {Dwight, R.P.},
+ BookTitle = {IOP Conference Series: Materials Science and Engineering},
+ Volume = {10},
+ Number = {1},
+ Pages = {012224},
+ Year = {2010},
+ Organization = {IOP Publishing}
+}
+
+###InProceedings{ dwight-10,
+ Title = {Bayesian inference for data assimilation using
+ Least-Squares Finite Element methods},
+ Author = {Dwight, R.P.},
+ BookTitle = {IOP Conference Series: Materials Science and Engineering},
+ Volume = {10},
+ Number = {1},
+ Pages = {012224},
+ Year = {2010},
+ Organization = {IOP Publishing}
+}
+
+@Article{ dyverfeldt20154d,
+ Title = {4{D} flow cardiovascular magnetic resonance consensus
+ statement},
+ Author = {Dyverfeldt, Petter and Bissell, Malenka and Barker, Alex J
+ and Bolger, Ann F and Carlh{\"a}ll, Carl-Johan and Ebbers,
+ Tino and Francios, Christopher J and Frydrychowicz, Alex
+ and Geiger, Julia and Giese, Daniel and others},
+ Journal = {Journal of Cardiovascular Magnetic Resonance},
+ Volume = {17},
+ Number = {1},
+ Pages = {1--19},
+ Year = {2015},
+ Publisher = {Springer}
+}
+
+@Article{ dyverfeldt2015consensus4dflow,
+ Title = {4{D} flow cardiovascular magnetic resonance consensus
+ statement},
+ Author = {Dyverfeldt, Petter and Bissell, Malenka and Barker, Alex J
+ and Bolger, Ann F and Carlh{\"a}ll, Carl-Johan and Ebbers,
+ Tino and Francios, Christopher J and Frydrychowicz, Alex
+ and Geiger, Julia and Giese, Daniel and others},
+ Journal = {Journal of Cardiovascular Magnetic Resonance},
+ Volume = {17},
+ Number = {1},
+ Pages = {1--19},
+ Year = {2015},
+ Publisher = {Springer}
+}
+
+@Article{ dyverfeldt_4d_2015,
+ Title = {{{4D}} Flow Cardiovascular Magnetic Resonance Consensus
+ Statement},
+ Author = {Dyverfeldt, Petter and Bissell, Malenka and Barker, Alex
+ J. and Bolger, Ann F. and Carlh{\"a}ll, Carl-Johan and
+ Ebbers, Tino and Francios, Christopher J. and
+ Frydrychowicz, Alex and Geiger, Julia and Giese, Daniel and
+ Hope, Michael D. and Kilner, Philip J. and Kozerke,
+ Sebastian and Myerson, Saul and Neubauer, Stefan and
+ Wieben, Oliver and Markl, Michael},
+ Year = {2015},
+ Month = dec,
+ Volume = {17},
+ ISSN = {1532-429X},
+ DOI = {10.1186/s12968-015-0174-5},
+ Journal = {J Cardiovasc Magn Reson},
+ Language = {en},
+ Number = {1}
+}
+
+###Article{ dyverfeldt_4d_2015,
+ Title = {4D flow cardiovascular magnetic resonance consensus
+ statement},
+ Author = {Dyverfeldt, Petter and Bissell, Malenka and Barker, Alex J
+ and Bolger, Ann F and Carlh{\"a}ll, Carl-Johan and Ebbers,
+ Tino and Francios, Christopher J and Frydrychowicz, Alex
+ and Geiger, Julia and Giese, Daniel and others},
+ Journal = {Journal of Cardiovascular Magnetic Resonance},
+ Volume = {17},
+ Number = {1},
+ Pages = {72},
+ Year = {2015},
+ Publisher = {Springer}
+}
+
+@Article{ dyverfeldt_magnetic_2013,
+ Title = {Magnetic Resonance Measurement of Turbulent Kinetic Energy
+ for the Estimation of Irreversible Pressure Loss in Aortic
+ Stenosis},
+ Volume = {6},
+ Number = {1},
+ JournalTitle = {JACC: Cardiovascular Imaging},
+ Year = {2013},
+ Pages = {64--71},
+ Author = {Dyverfeldt, Petter and Hope, Michael D. and Tseng, Elaine
+ E. and Saloner, David}
+}
+
+@Article{ dyverfeldt_quantification_2006,
+ langid = {english},
+ Title = {Quantification of Intravoxel Velocity Standard Deviation
+ and Turbulence Intensity by Generalizing Phase-Contrast
+ {{MRI}}},
+ Volume = {56},
+ ISSN = {1522-2594},
+ URL = {http://onlinelibrary.wiley.com/doi/10.1002/mrm.21022/abstract},
+ DOI = {10.1002/mrm.21022},
+ Abstract = {Turbulent flow, characterized by velocity fluctuations, is
+ a contributing factor to the pathogenesis of several
+ cardiovascular diseases. A clinical noninvasive tool for
+ assessing turbulence is lacking, however. It is well known
+ that the occurrence of multiple spin velocities within a
+ voxel during the influence of a magnetic gradient moment
+ causes signal loss in phase-contrast magnetic resonance
+ imaging (PC-MRI). In this paper a mathematical derivation
+ of an expression for computing the standard deviation (SD)
+ of the blood flow velocity distribution within a voxel is
+ presented. The SD is obtained from the magnitude of PC-MRI
+ signals acquired with different first gradient moments. By
+ exploiting the relation between the SD and turbulence
+ intensity (TI), this method allows for quantitative studies
+ of turbulence. For validation, the TI in an in vitro flow
+ phantom was quantified, and the results compared favorably
+ with previously published laser Doppler anemometry (LDA)
+ results. This method has the potential to become an
+ important tool for the noninvasive assessment of turbulence
+ in the arterial tree. Magn Reson Med, 2006. © 2006
+ Wiley-Liss, Inc.},
+ Number = {4},
+ JournalTitle = {Magnetic Resonance in Medicine},
+ ShortJournal = {Magn. Reson. Med.},
+ URLDate = {2017-10-12},
+ Year = {2006-10-01},
+ Pages = {850-858},
+ Author = {Dyverfeldt, Petter and Sigfridsson, Andreas and Kvitting,
+ John-Peder Escobar and Ebbers, Tino}
+}
+
+@Article{ ebbers2001mrm,
+ Title = {Estimation of relative cardiovascular pressures using
+ time-resolved three-dimensional phase contrast {MRI}},
+ Author = {Ebbers, Tino and Wigstr{\"o}m, Lars and Bolger, Ann F and
+ Engvall, Jan and Karlsson, Matts},
+ Journal = {Magnetic resonance in medicine},
+ Volume = {45},
+ Number = {5},
+ Pages = {872--879},
+ Year = {2001},
+ Publisher = {Wiley Online Library}
+}
+
+###Article{ ebbers2001mrm,
+ Title = {Estimation of relative cardiovascular pressures using
+ time-resolved three-dimensional phase contrast {MRI}},
+ Author = {Ebbers, Tino and Wigstr{\"o}m, Lars and Bolger, Ann F and
+ Engvall, Jan and Karlsson, Matts},
+ Journal = {Magnetic resonance in medicine},
+ Volume = {45},
+ Number = {5},
+ Pages = {872--879},
+ Year = {2001},
+ Publisher = {Wiley Online Library}
+}
+
+@Article{ ebbers2009jmri,
+ Title = {Improving computation of cardiovascular relative pressure
+ fields from velocity {MRI}},
+ Author = {Ebbers, Tino and Farneb{\"a}ck, Gunnar},
+ Journal = {Journal of Magnetic Resonance Imaging},
+ Volume = {30},
+ Number = {1},
+ Pages = {54--61},
+ Year = {2009},
+ Publisher = {Wiley Online Library}
+}
+
+###Article{ ebbers2009jmri,
+ Title = {Improving computation of cardiovascular relative pressure
+ fields from velocity {MRI}},
+ Author = {Ebbers, Tino and Farneb{\"a}ck, Gunnar},
+ Journal = {Journal of Magnetic Resonance Imaging},
+ Volume = {30},
+ Number = {1},
+ Pages = {54--61},
+ Year = {2009},
+ Publisher = {Wiley Online Library}
+}
+
+@Article{ ebbers_estimation_2001,
+ Title = {Estimation of Relative Cardiovascular Pressures Using
+ Time-Resolved Three-Dimensional Phase Contrast {{MRI}}},
+ Author = {Ebbers, Tino and Wigstr{\"o}m, Lars and Bolger, Ann F. and
+ Engvall, Jan and Karlsson, Matts},
+ Year = {2001},
+ Volume = {45},
+ Pages = {872--879},
+ Journal = {Magnetic Resonance in Medicine: An Official Journal of the
+ International Society for Magnetic Resonance in Medicine},
+ Number = {5}
+}
+
+###Article{ ebbers_estimation_2001,
+ Title = {Estimation of Relative Cardiovascular Pressures Using
+ Time-Resolved Three-Dimensional Phase Contrast {{MRI}}},
+ Volume = {45},
+ Number = {5},
+ JournalTitle = {Magnetic Resonance in Medicine: An Official Journal of the
+ International Society for Magnetic Resonance in Medicine},
+ Year = {2001},
+ Pages = {872--879},
+ Author = {Ebbers, Tino and Wigström, Lars and Bolger, Ann F. and
+ Engvall, Jan and Karlsson, Matts}
+}
+
+@Article{ ebbers_improving_2009,
+ Title = {Improving Computation of Cardiovascular Relative Pressure
+ Fields from Velocity {{MRI}}},
+ Author = {Ebbers, Tino and Farneb{\"a}ck, Gunnar},
+ Year = {2009},
+ Volume = {30},
+ Pages = {54--61},
+ Journal = {Journal of Magnetic Resonance Imaging},
+ Number = {1}
+}
+
+@Article{ ebbers_noninvasive_2002,
+ Title = {Noninvasive Measurement of Time-Varying Three-Dimensional
+ Relative Pressure Fields within the Human Heart},
+ Volume = {124},
+ URL = {http://biomechanical.asmedigitalcollection.asme.org/data/Journals/JBENDY/26248/288_1.pdf},
+ Number = {3},
+ JournalTitle = {Journal of biomechanical engineering},
+ URLDate = {2015-07-24},
+ Date = {2002},
+ Pages = {288--293},
+ Author = {Ebbers, Tino and Wigstrom, L. and Bolger, A. F. and
+ Wranne, Bengt and Karlsson, Matts}
+}
+
+###Article{ ebbers_noninvasive_2002,
+ Title = {Noninvasive Measurement of Time-Varying Three-Dimensional
+ Relative Pressure Fields within the Human Heart},
+ Volume = {124},
+ URL = {http://biomechanical.asmedigitalcollection.asme.org/data/Journals/JBENDY/26248/288_1.pdf},
+ Number = {3},
+ JournalTitle = {Journal of biomechanical engineering},
+ URLDate = {2015-07-24},
+ Year = {2002},
+ Pages = {288--293},
+ Author = {Ebbers, Tino and Wigstrom, L. and Bolger, A. F. and
+ Wranne, Bengt and Karlsson, Matts}
+}
+
+@InBook{ engeldinger-62,
+ Annote = {mhd, duct flow},
+ Author = {Engeldinger, P.},
+ code = {mhd18},
+ Pages = {85-120},
+ Publisher = {Eyrolles},
+ Series = {Collection du Laboratoire National d'Hydraulique},
+ Title = {Turbulence et perte de charge dans les {\'e}coulements
+ conducteurs en conduites avec champ magn{\'e}tique
+ transversal},
+ Year = {1962}
+}
+
+###InBook{ engeldinger-62,
+ Annote = {mhd, duct flow},
+ Author = {Engeldinger, P.},
+ code = {mhd18},
+ Pages = {85-120},
+ Publisher = {Eyrolles},
+ Series = {Collection du Laboratoire National d'Hydraulique},
+ Title = {Turbulence et perte de charge dans les {\'e}coulements
+ conducteurs en conduites avec champ magn{\'e}tique
+ transversal},
+ Year = {1962}
+}
+
+@Article{ engelman-sani-gresho-82,
+ Author = {Engelman, M.S. and Sani, R.L. and Gresho, P.M.},
+ Journal = {Int. J. Num. Meth. Fluids},
+ Number = {3},
+ Pages = {225--238},
+ Title = {The implementation of normal and/or tangential velocity
+ boundary conditions in finite element codes for
+ incompressible fluid flow},
+ Volume = {2},
+ Year = {1982}
+}
+
+###Article{ engelman-sani-gresho-82,
+ Author = {Engelman, M.S. and Sani, R.L. and Gresho, P.M.},
+ Journal = {Int. J. Num. Meth. Fluids},
+ Number = {3},
+ Pages = {225--238},
+ Title = {The implementation of normal and/or tangential velocity
+ boundary conditions in finite element codes for
+ incompressible fluid flow},
+ Volume = {2},
+ Year = {1982}
+}
+
+@Article{ ennis2008myofiber,
+ Author = {Ennis, Daniel B and Nguyen, Tom C and Riboh, Jonathan C
+ and Wigstr{\"o}m, Lars and Harrington, Katherine B and
+ Daughters, George T and Ingels, Neil B and Miller, D Craig},
+ Title = {Myofiber angle distributions in the ovine left ventricle
+ do not conform to computationally optimized predictions},
+ Journal = {Journal of Biomechanics},
+ Year = {2008},
+ Volume = {41},
+ Pages = {3219--3224},
+ Number = {15},
+ Publisher = {Elsevier}
+}
+
+@Article{ erbel_2014_2014,
+ Title = {2014 {{ESC Guidelines}} on the Diagnosis and Treatment of
+ Aortic Diseases: {{Document}} Covering Acute and Chronic
+ Aortic Diseases of the Thoracic and Abdominal Aorta of the
+ Adult. {{The Task Force}} for the {{Diagnosis}} and
+ {{Treatment}} of {{Aortic Diseases}} of the {{European
+ Society}} of {{Cardiology}} ({{ESC}})},
+ Volume = {35},
+ ShortTitle = {2014 {{ESC Guidelines}} on the Diagnosis and Treatment of
+ Aortic Diseases},
+ Number = {41},
+ JournalTitle = {European heart journal},
+ Year = {2014},
+ Pages = {2873--2926},
+ Author = {Erbel, Raimund and Aboyans, Victor and Boileau, Catherine
+ and Bossone, Eduardo and Bartolomeo, Roberto Di and
+ Eggebrecht, Holger and Evangelista, Arturo and Falk,
+ Volkmar and Frank, Herbert}
+}
+
+@Article{ eriksson2013mms,
+ Title = {Influence of myocardial fiber/sheet orientations on left
+ ventricular mechanical contraction},
+ Author = {Eriksson, TSE and Prassl, AJ and Plank, G and Holzapfel,
+ GA},
+ Journal = {Mathematics and Mechanics of Solids},
+ Year = {2013},
+ Abstract = {At any point in space the material properties of the
+ myocardium are characterized as orthotropic, that is, there
+ are three mutually orthogonal axes along which both
+ electrical and mechanical parameters differ. To investigate
+ the role of spatial structural heterogeneity in an
+ orthotropic material, electro-mechanically coupled models
+ of the left ventricle (LV) were used. The implemented
+ models differed in their arrangement of fibers and sheets
+ in the myocardium, but were identical otherwise: (i) a
+ generic homogeneous model, where a rule-based method was
+ applied to assign fiber and sheet orientations, and (ii) a
+ heterogeneous model, where the assignment of the
+ orthotropic tissue structure was based on experimentally
+ obtained fiber/sheet orientations. While both models
+ resulted in pressure?volume loops and metrics of global
+ mechanical function that were qualitatively and
+ quantitatively similar and matched well with experimental
+ data, the predicted deformations were strikingly different
+ between these models, particularly with regard to torsion.
+ Thus, the simulation results strongly suggest that
+ heterogeneous structure properties play an important
+ nonnegligible role in LV mechanics and, consequently,
+ should be accounted for in computational models.},
+ DOI = {10.1177/1081286513485779},
+ EPrint = {http://mms.sagepub.com/content/early/2013/05/29/1081286513485779.full.pdf+html},
+ File = {eriksson13a.pdf:eriksson13a.pdf:PDF},
+ timestamp = {2015/09/22},
+ URL = {http://mms.sagepub.com/content/early/2013/05/29/1081286513485779.abstract}
+}
+
+@Book{ ern:guermond:04,
+ Author = {Ern, A. and Guermond, J.~L.},
+ Title = {Theory and practice of finite elements},
+ Series = {Applied Mathematical Sciences},
+ Volume = {159},
+ Publisher = {Springer-Verlag},
+ Address = {New York},
+ Year = {2004},
+ Pages = {xiv+524},
+ ISBN = {0-387-20574-8},
+ mrclass = {65-02 (65M60 65N30 74S05 76M10 78M10)},
+ mrnumber = {MR2050138 (2005d:65002)},
+ mrreviewer = {R. S. Anderssen}
+}
+
+###Book{ ern:guermond:04,
+ Author = {Ern, A. and Guermond, J.~L.},
+ Title = {Theory and practice of finite elements},
+ Series = {Applied Mathematical Sciences},
+ Volume = {159},
+ Publisher = {Springer-Verlag},
+ Address = {New York},
+ Year = {2004},
+ Pages = {xiv+524},
+ ISBN = {0-387-20574-8},
+ mrclass = {65-02 (65M60 65N30 74S05 76M10 78M10)},
+ mrnumber = {MR2050138 (2005d:65002)},
+ mrreviewer = {R. S. Anderssen}
+}
+
+@Book{ ernguermond04,
+ Address = {New York},
+ Author = {Ern, A. and Guermond, J.-L.},
+ Publisher = {Springer-Verlag},
+ Series = {Applied Mathematical Sciences},
+ Title = {Theory and practice of finite elements},
+ Volume = {159},
+ Year = {2004}
+}
+
+###Book{ ernguermond04,
+ Address = {New York},
+ Author = {Ern, A. and Guermond, J.-L.},
+ Publisher = {Springer-Verlag},
+ Series = {Applied Mathematical Sciences},
+ Title = {Theory and practice of finite elements},
+ Volume = {159},
+ Year = {2004}
+}
+
+@Article{ ervedozaz-zuazua-08,
+ Author = {Ervedoza, S. and Zuazua, E.},
+ date-added = {2009-03-10 11:44:05 -0700},
+ date-modified = {2009-03-10 11:59:10 -0700},
+ Journal = {J. Math. Pure Appl.},
+ Note = {},
+ Pages = {20--48},
+ Title = {Uniformly exponentially stable approximations for a class
+ of damped systems},
+ Volume = {91},
+ Year = {2009}
+}
+
+###Article{ ervedozaz-zuazua-08,
+ Author = {Ervedoza, S. and Zuazua, E.},
+ date-added = {2009-03-10 11:44:05 -0700},
+ date-modified = {2009-03-10 11:59:10 -0700},
+ Journal = {J. Math. Pure Appl.},
+ Note = {},
+ Pages = {20--48},
+ Title = {Uniformly exponentially stable approximations for a class
+ of damped systems},
+ Volume = {91},
+ Year = {2009}
+}
+
+@Article{ essig2013perfusion,
+ Title = {Perfusion MRI: the five most frequently asked technical
+ questions},
+ Author = {Essig, Marco and Shiroishi, Mark S and Nguyen, Thanh Binh
+ and Saake, Marc and Provenzale, James M and Enterline,
+ David and Anzalone, Nicoletta and D{\"o}rfler, Arnd and
+ Rovira, {\`A}lex and Wintermark, Max and others},
+ Journal = {AJR. American journal of roentgenology},
+ Volume = {200},
+ Number = {1},
+ Pages = {24},
+ Year = {2013},
+ Publisher = {NIH Public Access}
+}
+
+@Article{ eu-pwv-10,
+ Title = {Determinants of pulse wave velocity in healthy people and
+ in the presence of cardiovascular risk factors:
+ establishing normal and reference values},
+ Author = {{The Reference Values for Arterial Stiffness'
+ Collaboration}},
+ Volume = {31},
+ Number = {},
+ Journal = {European Heart Journal},
+ Publisher = {The European Society of Cardiology},
+ Year = {2010},
+ Pages = {2338--2350}
+}
+
+###Article{ eu-pwv-10,
+ Title = {Determinants of pulse wave velocity in healthy people and
+ in the presence of cardiovascular risk factors:
+ establishing normal and reference values},
+ Author = {{The Reference Values for Arterial Stiffness'
+ Collaboration}},
+ Volume = {31},
+ Number = {},
+ Journal = {European Heart Journal},
+ Publisher = {The European Society of Cardiology},
+ Year = {2010},
+ Pages = {2338--2350}
+}
+
+@InBook{ evans2010pde,
+ Author = {Evans, L.C.},
+ Title = {Partial Differential Equations: Second Edition},
+ Year = {2010},
+ Publisher = {AMS. Graduate Series in Mathematics},
+ Volume = {19.R}
+}
+
+@Book{ evensen-09,
+ Title = {Data assimilation: the ensemble Kalman filter},
+ Author = {Evensen, G.},
+ Year = {2009},
+ Publisher = {Springer Verlag}
+}
+
+###Book{ evensen-09,
+ Title = {Data assimilation: the ensemble Kalman filter},
+ Author = {Evensen, G.},
+ Year = {2009},
+ Publisher = {Springer Verlag}
+}
+
+@Book{ evensen_data_2009,
+ langid = {english},
+ Title = {Data {{Assimilation}}: {{The Ensemble Kalman Filter}}},
+ ISBN = {978-3-642-03711-5},
+ ShortTitle = {Data {{Assimilation}}},
+ Abstract = {Data Assimilation comprehensively covers data assimilation
+ and inverse methods, including both traditional state
+ estimation and parameter estimation. This text and
+ reference focuses on various popular data assimilation
+ methods, such as weak and strong constraint variational
+ methods and ensemble filters and smoothers. It is
+ demonstrated how the different methods can be derived from
+ a common theoretical basis, as well as how they differ
+ and/or are related to each other, and which properties
+ characterize them, using several examples. Rather than
+ emphasize a particular discipline such as oceanography or
+ meteorology, it presents the mathematical framework and
+ derivations in a way which is common for any discipline
+ where dynamics is merged with measurements. The mathematics
+ level is modest, although it requires knowledge of basic
+ spatial statistics, Bayesian statistics, and calculus of
+ variations. Readers will also appreciate the introduction
+ to the mathematical methods used and detailed derivations,
+ which should be easy to follow, are given throughout the
+ book. The codes used in several of the data assimilation
+ experiments are available on a web page. In particular,
+ this webpage contains a complete ensemble Kalman filter
+ assimilation system, which forms an ideal starting point
+ for a user who wants to implement the ensemble Kalman
+ filter with his/her own dynamical model. The focus on
+ ensemble methods, such as the ensemble Kalman filter and
+ smoother, also makes it a solid reference to the
+ derivation, implementation and application of such
+ techniques. Much new material, in particular related to the
+ formulation and solution of combined parameter and state
+ estimation problems and the general properties of the
+ ensemble algorithms, is available here for the first time.
+ The 2nd edition includes a partial rewrite of Chapters 13
+ an 14, and the Appendix. In addition, there is a completely
+ new Chapter on "Spurious correlations, localization and
+ inflation", and an updated and improved sampling discussion
+ in Chap 11.},
+ PageTotal = {314},
+ Publisher = {{Springer Science \& Business Media}},
+ Year = {2009-08-17},
+ Author = {Evensen, Geir},
+ EPrintType = {googlebooks}
+}
+
+@Article{ evensen_ensemble_2009,
+ Title = {The Ensemble {{Kalman}} Filter for Combined State and
+ Parameter Estimation},
+ Volume = {29},
+ ISSN = {1066-033X},
+ DOI = {10.1109/MCS.2009.932223},
+ Abstract = {This article provides a fundamental theoretical basis for
+ understanding EnKF and serves as a useful text for future
+ users. Data assimilation and parameter-estimation problems
+ are explained, and the concept of joint parameter and state
+ estimation, which can be solved using ensemble methods, is
+ presented. KF and EKF are briefly discussed before
+ introducing and deriving EnKF. Similarities and differences
+ between KF and EnKF are pointed out. The benefits of using
+ EnKF with high-dimensional and highly nonlinear dynamical
+ models are illustrated by examples. EnKF and EnKS are also
+ derived from Bayes theorem, using a probabilistic approach.
+ The derivation is based on the assumption that measurement
+ errors are independent in time and the model represents a
+ Markov process, which allows for Bayes theorem to be
+ written in a recursive form, where measurements are
+ processed sequentially in time. The practical
+ implementation of the analysis scheme isdiscussed, and it
+ is shown that it can be computed efficiently in the space
+ spanned by the ensemble realizations. The square root
+ scheme is discussed as an alternative method that avoids
+ the perturbation of measurements. However, the square root
+ scheme has other pitfalls, and it is recommended to use the
+ symmetric square root with or without a random rotation.
+ The random rotation introduces a stochastic component to
+ the update, and the quality of the scheme may then not
+ improve compared to the original stochastic EnKF scheme
+ with perturbed measurements.},
+ Number = {3},
+ JournalTitle = {IEEE Control Systems Magazine},
+ Year = {2009-06},
+ Pages = {83-104},
+ Author = {Evensen, G.}
+}
+
+@Article{ ewert01072005,
+ Author = {Ewert, P. and Schubert, S. and Peters, B. and
+ Abdul-Khaliq, H. and Nagdyman, N. and Lange, P.E.},
+ Title = {{The CP stent short, long, covered for the treatment of
+ aortic coarctation, stenosis of pulmonary arteries and
+ caval veins, and Fontan anastomosis in children and adults:
+ an evaluation of 60 stents in 53 patients}},
+ Volume = {91},
+ Number = {7},
+ Pages = {948-953},
+ Year = {2005},
+ DOI = {10.1136/hrt.2004.040071},
+ Abstract = {},
+ Journal = {Heart}
+}
+
+###Article{ ewert01072005,
+ Author = {Ewert, P. and Schubert, S. and Peters, B. and
+ Abdul-Khaliq, H. and Nagdyman, N. and Lange, P.E.},
+ Title = {{The CP stent short, long, covered for the treatment of
+ aortic coarctation, stenosis of pulmonary arteries and
+ caval veins, and Fontan anastomosis in children and adults:
+ an evaluation of 60 stents in 53 patients}},
+ Volume = {91},
+ Number = {7},
+ Pages = {948-953},
+ Year = {2005},
+ DOI = {10.1136/hrt.2004.040071},
+ Abstract = {},
+ URL = {http://heart.bmj.com/content/91/7/948.abstract},
+ EPrint = {http://heart.bmj.com/content/91/7/948.full.pdf},
+ Journal = {Heart}
+}
+
+@Unpublished{ eymard-gallouet-herbin-michel,
+ Author = {Eymard, R. and Gallou{\"e}t, T. and Herbin, R. and Michel,
+ A.},
+ Title = {Convergence of a finite volume scheme for nonlinear
+ degenerate parabolic equations}
+}
+
+###Unpublished{ eymard-gallouet-herbin-michel,
+ Author = {Eymard, R. and Gallou{\"e}t, T. and Herbin, R. and Michel,
+ A.},
+ Note = {Preprint 2001},
+ Title = {Convergence of a finite volume scheme for nonlinear
+ degenerate parabolic equations}
+}
+
+@Article{ falk_2017_2017,
+ langid = {english},
+ Title = {2017 {{ESC}}/{{EACTS Guidelines}} for the Management of
+ Valvular Heart Disease},
+ Volume = {52},
+ ISSN = {1010-7940},
+ URL = {https://academic.oup.com/ejcts/article/52/4/616/4095090},
+ DOI = {10.1093/ejcts/ezx324},
+ Abstract = {The Task Force for the Management of Valvular Heart
+ Disease of the European Society of Cardiology (ESC) and the
+ European Association for Cardio-Thoracic Surgery},
+ Number = {4},
+ JournalTitle = {European Journal of Cardio-Thoracic Surgery},
+ ShortJournal = {Eur J Cardiothorac Surg},
+ URLDate = {2019-01-30},
+ Year = {2017-10-01},
+ Pages = {616-664},
+ Author = {Falk, Volkmar and Baumgartner, Helmut and Bax, Jeroen J.
+ and De Bonis, Michele and Hamm, Christian and Holm, Per
+ Johan and Iung, Bernard and Lancellotti, Patrizio and
+ Lansac, Emmanuel and Muñoz, Daniel Rodriguez and Rosenhek,
+ Raphael and Sjögren, Johan and Tornos Mas, Pilar and
+ Vahanian, Alec and Walther, Thomas and Wendler, Olaf and
+ Windecker, Stephan and Zamorano, Jose Luis and Roffi, Marco
+ and Alfieri, Ottavio and Agewall, Stefan and Ahlsson,
+ Anders and Barbato, Emanuele and Bueno, Héctor and Collet,
+ Jean-Philippe and Coman, Ioan Mircea and Czerny, Martin and
+ Delgado, Victoria and Fitzsimons, Donna and Folliguet,
+ Thierry and Gaemperli, Oliver and Habib, Gilbert and
+ Harringer, Wolfgang and Haude, Michael and Hindricks,
+ Gerhard and Katus, Hugo A. and Knuuti, Juhani and Kolh,
+ Philippe and Leclercq, Christophe and McDonagh, Theresa A.
+ and Piepoli, Massimo Francesco and Pierard, Luc A. and
+ Ponikowski, Piotr and Rosano, Giuseppe M. C. and
+ Ruschitzka, Frank and Shlyakhto, Evgeny and Simpson, Iain
+ A. and Sousa-Uva, Miguel and Stepinska, Janina and
+ Tarantini, Giuseppe and Tchétché, Didier and Aboyans,
+ Victor}
+}
+
+@Article{ farag2018aorticflow,
+ Title = {Aortic valve stenosis and aortic diameters determine the
+ extent of increased wall shear stress in bicuspid aortic
+ valve disease},
+ Author = {Farag, E. and Ooij, P. and Planken, N. and Dukker, K. and
+ Heer, F. and Bouma, B. and Robbers-Visser, D. and Groenink,
+ M. and Nederveen, A. and Mol, B. and Kluin, J. and
+ Boekholdt, S.},
+ Journal = {Journal of Magnetic Resonance Imaging},
+ Year = {2018},
+ Publisher = {Wiley Online Library},
+ Note = {ahead of print}
+}
+
+@Article{ farhat-lesoinne-le-tallec-98,
+ Author = {Farhat, C. and Lesoinne, M. and Le Tallec, P.},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Pages = {95-114},
+ Title = {Load and motion transfer algorithms for fluid/structure
+ interaction problems with non-matching discrete interfaces:
+ Momentum and energy conservation, optimal discretization
+ and application to aeroelasticity},
+ Volume = {157},
+ Year = {1998}
+}
+
+###Article{ farhat-lesoinne-le-tallec-98,
+ Author = {Farhat, C. and Lesoinne, M. and Le Tallec, P.},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Pages = {95-114},
+ Title = {Load and motion transfer algorithms for fluid/structure
+ interaction problems with non-matching discrete interfaces:
+ Momentum and energy conservation, optimal discretization
+ and application to aeroelasticity},
+ Volume = {157},
+ Year = {1998}
+}
+
+@InProceedings{ farhat-lieu-07,
+ Address = {San Francisco},
+ Author = {Farhat, C. and Lieu, T.},
+ BookTitle = {Ninth U.S. National Congress on Computational Mechanics:
+ USNCCM9},
+ Month = {July 23--26},
+ Title = {A discussion of recent trends and claims pertaining to the
+ staggered solution of {F}{S}{I} problems},
+ Year = 2007
+}
+
+###InProceedings{ farhat-lieu-07,
+ Address = {San Francisco},
+ Author = {Farhat, C. and Lieu, T.},
+ BookTitle = {Ninth U.S. National Congress on Computational Mechanics:
+ USNCCM9},
+ Month = {July 23--26},
+ Title = {A discussion of recent trends and claims pertaining to the
+ staggered solution of {F}{S}{I} problems},
+ Year = 2007
+}
+
+@Article{ farhat-van-der-zee-geuzaine,
+ Author = {Farhat, C. and van der Zee, K. and Geuzaine, Ph.},
+ Journal = {Comput. Methods Appl. Mech. Engrg. },
+ Number = {17--18},
+ Pages = {1973--2001},
+ Title = {Provably second-order time-accurate loosely-coupled
+ solution algorithms for transient nonlinear
+ aeroelasticity},
+ Volume = {195},
+ Year = {2006}
+}
+
+###Article{ farhat-van-der-zee-geuzaine,
+ Author = {Farhat, C. and van der Zee, K. and Geuzaine, Ph.},
+ Journal = {Comput. Methods Appl. Mech. Engrg. },
+ Number = {17--18},
+ Pages = {1973--2001},
+ Title = {Provably second-order time-accurate loosely-coupled
+ solution algorithms for transient nonlinear
+ aeroelasticity},
+ Volume = {195},
+ Year = {2006}
+}
+
+@InProceedings{ farhat-xx,
+ Address = {Salzburg, Austria},
+ Author = {Farhat, C.},
+ BookTitle = {Proceedings of the 5th International Conference on
+ Computation of Shell and Spatial Structures},
+ Editor = {Ramm, E. and Wall, W.A. and Bletzinger, K.U. and Bischoff,
+ M.},
+ Month = {June 1-4},
+ Title = {On the numerical stability of a class of loosely-coupled,
+ higher-order, fluid/structure solution algorithms},
+ Year = {2005}
+}
+
+###InProceedings{ farhat-xx,
+ Address = {Salzburg, Austria},
+ Author = {Farhat, C.},
+ BookTitle = {Proceedings of the 5th International Conference on
+ Computation of Shell and Spatial Structures},
+ Editor = {Ramm, E. and Wall, W.A. and Bletzinger, K.U. and Bischoff,
+ M.},
+ Month = {June 1-4},
+ Title = {On the numerical stability of a class of loosely-coupled,
+ higher-order, fluid/structure solution algorithms},
+ Year = {2005}
+}
+
+@Article{ farzaneh2018inverse,
+ Title = {Inverse identification of local stiffness across ascending
+ thoracic aortic aneurysms},
+ Author = {Farzaneh, Solmaz and Trabelsi, Olfa and Avril,
+ St{\'e}phane},
+ Journal = {Biomechanics and modeling in mechanobiology},
+ Pages = {1--17},
+ Year = {2018},
+ Publisher = {Springer}
+}
+
+@Book{ fattouch2018advances,
+ Title = {Advances in Treatments for Aortic Valve and Root
+ Diseases},
+ Author = {Fattouch, K. and Lancellotti, P. and Vannan, M. and
+ Speziale, G.},
+ Year = {2018},
+ Publisher = {Springer},
+ Note = {doi.org/10.1007/978-3-319-66483-5}
+}
+
+@Article{ fedele2017patient,
+ Title = {A patient-specific aortic valve model based on moving
+ resistive immersed implicit surfaces},
+ Author = {Fedele, M. and Faggiano, E. and Ded{\`e}, L. and
+ Quarteroni, A.},
+ Journal = {Biomechanics and modeling in mechanobiology},
+ Volume = {16},
+ Number = {5},
+ Pages = {1779--1803},
+ Year = {2017},
+ Publisher = {Springer}
+}
+
+@Article{ federau2014nmrbiomed,
+ Title = {Increased brain perfusion contrast with T 2 -prepared
+ intravoxel incoherent motion (T2prep IVIM) {MRI}},
+ Author = {Federau, Christian and O'Brien, Kieran},
+ Journal = {NMR in Biomedicine},
+ Year = {2015},
+ Pages = {9-16},
+ Volume = {28},
+ DOI = {10.1002/nbm.3223},
+ File = {:Federau2014NMRBIOMED.pdf:PDF},
+ ISSN = {0952-3480},
+ Publisher = {Wiley-Blackwell},
+ URL = {http://dx.doi.org/10.1002/nbm.3223}
+}
+
+@Article{ felipe2016recovering,
+ Title = {Recovering Latent Signals from a Mixture of Measurements
+ using a Gaussian Process Prior},
+ Author = {Felipe Tobar and Gonzalo Rios and Tom{\'a}s Valdivia and
+ Pablo Guerrero},
+ Journal = {IEEE Signal Processing Letters},
+ Year = {2016}
+}
+
+@InProceedings{ felippa-05,
+ Author = {Felippa, C.A.},
+ BookTitle = {5th international Conference on Computational of Shell \&
+ Spatial Structures},
+ Organization = {IASS-IACM},
+ Title = {Underwater shock on stiffened shells: the source of
+ {Staggered Solution Procedure}},
+ Year = {2005}
+}
+
+###InProceedings{ felippa-05,
+ Author = {Felippa, C.A.},
+ BookTitle = {5th international Conference on Computational of Shell \&
+ Spatial Structures},
+ Organization = {IASS-IACM},
+ Title = {Underwater shock on stiffened shells: the source of
+ {Staggered Solution Procedure}},
+ Year = {2005}
+}
+
+@Article{ felippa-deruntz-84,
+ Author = {Felippa, C.A. and Deruntz, J.A.},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Number = {3},
+ Pages = {297--337},
+ Title = {Finite element analysis of shock-induced hull cavitation},
+ Volume = {44},
+ Year = {1984}
+}
+
+###Article{ felippa-deruntz-84,
+ Author = {Felippa, C.A. and Deruntz, J.A.},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Number = {3},
+ Pages = {297--337},
+ Title = {Finite element analysis of shock-induced hull cavitation},
+ Volume = {44},
+ Year = {1984}
+}
+
+@Article{ feltes_indications_2011,
+ Title = {Indications for Cardiac Catheterization and Intervention
+ in Pediatric Cardiac Disease: A Scientific Statement from
+ the {{American Heart Association}}},
+ ShortTitle = {Indications for Cardiac Catheterization and Intervention
+ in Pediatric Cardiac Disease},
+ Author = {Feltes, Timothy F. and Bacha, Emile and Beekman III,
+ Robert H. and Cheatham, John P. and Feinstein, Jeffrey A.
+ and Gomes, Antoinette S. and Hijazi, Ziyad M. and Ing,
+ Frank F. and De Moor, Michael and Morrow, W. Robert},
+ Year = {2011},
+ Volume = {123},
+ Pages = {2607--2652},
+ Journal = {Circulation},
+ Number = {22}
+}
+
+@Article{ feng-ganatos-weinbaum-98,
+ Author = {Feng, J. and Ganatos, P. and Weinbaum, S.},
+ code = {por6},
+ Journal = {Physics of fluids},
+ Number = {9},
+ Pages = {2137-2146},
+ Title = {The general motion of a circular disk in a Brinkman
+ medium},
+ Volume = {10},
+ Year = {1998}
+}
+
+###Article{ feng-ganatos-weinbaum-98,
+ Author = {Feng, J. and Ganatos, P. and Weinbaum, S.},
+ code = {por6},
+ Journal = {Physics of fluids},
+ Number = {9},
+ Pages = {2137-2146},
+ Title = {The general motion of a circular disk in a Brinkman
+ medium},
+ Volume = {10},
+ Year = {1998}
+}
+
+@Article{ feng-ganatos-weinbaum-98b,
+ Annote = {brinkman},
+ Author = {Feng, J. and Ganatos, P. and Weinbaum, S.},
+ code = {por7},
+ Journal = {J. Fluid Mech.},
+ Pages = {265-296},
+ Title = {Motion of a sphere near planar confining boundaries in a
+ Brinkman medium},
+ Volume = {375},
+ Year = {1998}
+}
+
+###Article{ feng-ganatos-weinbaum-98b,
+ Annote = {brinkman},
+ Author = {Feng, J. and Ganatos, P. and Weinbaum, S.},
+ code = {por7},
+ Journal = {J. Fluid Mech.},
+ Pages = {265-296},
+ Title = {Motion of a sphere near planar confining boundaries in a
+ Brinkman medium},
+ Volume = {375},
+ Year = {1998}
+}
+
+@Unpublished{ feng-weinbaum-99,
+ Annote = {darcy, brinkman},
+ Author = {Feng, J. and Weinbaum, S.},
+ code = {por5},
+ Note = {submitted to J. Fluid Mech.},
+ Title = {A model for flow through a planar orifice in a
+ fiber-filled medium with application to fenestral pores in
+ biological tissue},
+ Year = {1999}
+}
+
+###Unpublished{ feng-weinbaum-99,
+ Annote = {darcy, brinkman},
+ Author = {Feng, J. and Weinbaum, S.},
+ code = {por5},
+ Note = {submitted to J. Fluid Mech.},
+ Title = {A model for flow through a planar orifice in a
+ fiber-filled medium with application to fenestral pores in
+ biological tissue},
+ Year = {1999}
+}
+
+@Article{ fenics,
+ Title = {The FEniCS Project Version 1.5},
+ Author = {Martin S. Aln{\ae}s and Jan Blechta and Johan Hake and
+ August Johansson and Benjamin Kehlet and Anders Logg and
+ Chris Richardson and Johannes Ring and Marie E. Rognes and
+ Garth N. Wells},
+ Year = {2015},
+ Journal = {Archive of Numerical Software},
+ Volume = {3},
+ Number = {100},
+ DOI = {10.11588/ans.2015.100.20553},
+ page = {9-23}
+}
+
+@Article{ fenmori-covell-fletcher-weinstein-89,
+ Author = {Fenmori, K. and Covell, D. G. and Fletcher, J. E. and
+ Weinstein, J. N.},
+ Journal = {Cancer Research},
+ Pages = {5656-5663},
+ Title = {Modeling analysis of the global and microscopic
+ distribution of immunoglobulin {G}, {F}(ab')$_2$ and {F}ab
+ in tumors},
+ Volume = {49},
+ Year = {1989}
+}
+
+###Article{ fenmori-covell-fletcher-weinstein-89,
+ Author = {Fenmori, K. and Covell, D. G. and Fletcher, J. E. and
+ Weinstein, J. N.},
+ Journal = {Cancer Research},
+ Pages = {5656-5663},
+ Title = {Modeling analysis of the global and microscopic
+ distribution of immunoglobulin {G}, {F}(ab')$_2$ and {F}ab
+ in tumors},
+ Volume = {49},
+ Year = {1989}
+}
+
+@InProceedings{ fernandez-09,
+ Address = {Tokyo, Japan},
+ Author = {Fern\'andez, M.A.},
+ BookTitle = {Proc. of the 15th International Conference on Finite
+ Elements in Flow Problems},
+ Month = {April 1--3},
+ Title = {Robin based explicit coupling in fluid-structure
+ interaction},
+ Year = {2009}
+}
+
+###InProceedings{ fernandez-09,
+ Address = {Tokyo, Japan},
+ Author = {Fern\'andez, M.A.},
+ BookTitle = {Proc. of the 15th International Conference on Finite
+ Elements in Flow Problems},
+ Month = {April 1--3},
+ Title = {Robin based explicit coupling in fluid-structure
+ interaction},
+ Year = {2009}
+}
+
+@Article{ fernandez-11b,
+ Author = {Fern\'andez, M.-A.},
+ Title = {Coupling schemes for incompressible fluid-structure
+ interaction: implicit, semi-implicit and explicit},
+ Journal = {S$\vec{\rm e}$MA J.},
+ Year = {2011},
+ Number = {55},
+ Pages = {59--108}
+}
+
+###Article{ fernandez-11b,
+ Author = {Fern\'andez, M.-A.},
+ Title = {Coupling schemes for incompressible fluid-structure
+ interaction: implicit, semi-implicit and explicit},
+ Journal = {S$\vec{\rm e}$MA J.},
+ Year = {2011},
+ Number = {55},
+ Pages = {59--108}
+}
+
+@Article{ fernandez-11sema,
+ Author = {Fern\'andez, M.A.},
+ Journal = {Bol. Soc. Esp. Mat. Apl.},
+ Number = {},
+ Pages = {},
+ Title = {Coupling schemes for incompressible fluid-structure
+ interaction: implicit, semi-implicit and explicit},
+ Volume = {to appear},
+ Year = {2011}
+}
+
+###Article{ fernandez-11sema,
+ Author = {Fern\'andez, M.A.},
+ Journal = {Bol. Soc. Esp. Mat. Apl.},
+ Number = {},
+ Pages = {},
+ Title = {Coupling schemes for incompressible fluid-structure
+ interaction: implicit, semi-implicit and explicit},
+ Volume = {to appear},
+ Year = {2011}
+}
+
+@PhdThesis{ fernandez-89,
+ Author = {G. Fernandez},
+ Month = {juin},
+ School = {universit{\'e} de Nice},
+ Title = {Simulation num{\'e}rique d'{\'e}coulements r{\'e}actifs
+ {\`a} petit nombre de Mach},
+ Year = {1989}
+}
+
+###PhdThesis{ fernandez-89,
+ Author = {G. Fernandez},
+ Month = {juin},
+ School = {universit{\'e} de Nice},
+ Title = {Simulation num{\'e}rique d'{\'e}coulements r{\'e}actifs
+ {\`a} petit nombre de Mach},
+ Year = {1989}
+}
+
+@InBook{ fernandez-gerbeau-09,
+ Author = {Fern\'andez, M.A. and Gerbeau, J-F.},
+ Title = {Fluid structure interaction problems in haemodynamics},
+ Chapter = 9,
+ Publisher = {Springer Verlag},
+ Year = {2009},
+ Note = {in {\em Cardiovascular {M}athematics. {M}odeling and
+ simulation of the circulatory system}, L. Formaggia, A.
+ Quarteroni, A. Veneziani editors}
+}
+
+@Article{ fernandez-gerbeau-grandmont-06,
+ Author = {Fern{\'a}ndez, M.A. and Gerbeau, J-F. and Grandmont, C.},
+ Journal = {C. R. Math. Acad. Sci. Paris},
+ Number = {4},
+ Pages = {279--284},
+ Title = {A projection algorithm for fluid-structure interaction
+ problems with strong added-mass effect},
+ Volume = {342},
+ Year = {2006}
+}
+
+###Article{ fernandez-gerbeau-grandmont-06,
+ Author = {Fern{\'a}ndez, M.A. and Gerbeau, J-F. and Grandmont, C.},
+ Journal = {C. R. Math. Acad. Sci. Paris},
+ Number = {4},
+ Pages = {279--284},
+ Title = {A projection algorithm for fluid-structure interaction
+ problems with strong added-mass effect},
+ Volume = {342},
+ Year = {2006}
+}
+
+@Article{ fernandez-gerbeau-grandmont-07,
+ Author = {Fern{\'a}ndez, M.A. and Gerbeau, J.F. and Grandmont, C.},
+ Journal = {Int. J. Num. Meth. Engrg.},
+ Number = {4},
+ Pages = {794--821},
+ Title = {A projection semi-implicit scheme for the coupling of an
+ elastic structure with an incompressible fluid},
+ Volume = {69},
+ Year = {2007}
+}
+
+###Article{ fernandez-gerbeau-grandmont-07,
+ Author = {Fern{\'a}ndez, M.A. and Gerbeau, J.F. and Grandmont, C.},
+ Journal = {Int. J. Num. Meth. Engrg.},
+ Number = {4},
+ Pages = {794--821},
+ Title = {A projection semi-implicit scheme for the coupling of an
+ elastic structure with an incompressible fluid},
+ Volume = {69},
+ Year = {2007}
+}
+
+@Article{ fernandez-gerbeau-martin-08,
+ Author = {Fern\'andez, M.A. and Gerbeau, J-F. and Martin, V.},
+ Journal = {M2AN Math. Model. Numer. Anal.},
+ Pages = {961--990},
+ Title = {Numerical simulation of blood flows through a porous
+ interface},
+ Volume = {42},
+ Year = {2008}
+}
+
+###Article{ fernandez-gerbeau-martin-08,
+ Author = {Fern\'andez, M.A. and Gerbeau, J-F. and Martin, V.},
+ Journal = {M2AN Math. Model. Numer. Anal.},
+ Pages = {961--990},
+ Title = {Numerical simulation of blood flows through a porous
+ interface},
+ Volume = {42},
+ Year = {2008}
+}
+
+@InProceedings{ fernandez-guillard-89,
+ Author = {G. Fernandez and H. Guillard},
+ BookTitle = {Proceedings of the 6th Int. Conf. on Numerical methods in
+ laminar and turbulent flows},
+ Editor = {Taylor, C. and Gresho, P. and Sani, R.L. and Hauser, J.},
+ Month = {11-15 july},
+ Publisher = {Pineridge Press, Swansea},
+ Title = {A numerical method for the computation of low {M}ach
+ number reactive flows},
+ Year = {1989}
+}
+
+###InProceedings{ fernandez-guillard-89,
+ Author = {G. Fernandez and H. Guillard},
+ BookTitle = {Proceedings of the 6th Int. Conf. on Numerical methods in
+ laminar and turbulent flows},
+ Editor = {Taylor, C. and Gresho, P. and Sani, R.L. and Hauser, J.},
+ Month = {11-15 july},
+ Publisher = {Pineridge Press, Swansea},
+ Title = {A numerical method for the computation of low {M}ach
+ number reactive flows},
+ Year = {1989}
+}
+
+@Article{ fernandez-le-tallec-03,
+ Author = {Fern\'andez, M.A. and Le Tallec, P.},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Title = {Linear fluid-structure stability analysis with
+ transpiration. Part II: numerical analysis and
+ applications},
+ Volume = {192},
+ Number = {43},
+ Pages = {4837-4873},
+ Year = {2003}
+}
+
+###Article{ fernandez-le-tallec-03,
+ Author = {Fern\'andez, M.A. and Le Tallec, P.},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Title = {Linear fluid-structure stability analysis with
+ transpiration. Part II: numerical analysis and
+ applications},
+ Volume = {192},
+ Number = {43},
+ Pages = {4837-4873},
+ Year = {2003}
+}
+
+@Article{ fernandez-letallec-03,
+ Author = {Fernandez, M. and Le Tallec, P.},
+ Journal = {Comp. Meth. App. Mech.. Eng},
+ Pages = {4837-4873},
+ Title = {Linear fluid-structure stability analysis with
+ transpiration. Part II: numerical analysis and
+ applications},
+ Volume = {192},
+ Year = {2003}
+}
+
+###Article{ fernandez-letallec-03,
+ Author = {Fernandez, M. and Le Tallec, P.},
+ Journal = {Comp. Meth. App. Mech.. Eng},
+ Pages = {4837-4873},
+ Title = {Linear fluid-structure stability analysis with
+ transpiration. Part II: numerical analysis and
+ applications},
+ Volume = {192},
+ Year = {2003}
+}
+
+@Article{ fernandez-moubachir-03a,
+ Author = {Fern{\'a}ndez, M.A. and Moubachir, M.},
+ Journal = {C. R. Math. Acad. Sci. Paris},
+ Number = {8},
+ Pages = {681--686},
+ Title = {An exact block-{N}ewton algorithm for solving
+ fluid-structure interaction problems},
+ Volume = {336},
+ Year = {2003}
+}
+
+###Article{ fernandez-moubachir-03a,
+ Author = {Fern{\'a}ndez, M.A. and Moubachir, M.},
+ Journal = {C. R. Math. Acad. Sci. Paris},
+ Number = {8},
+ Pages = {681--686},
+ Title = {An exact block-{N}ewton algorithm for solving
+ fluid-structure interaction problems},
+ Volume = {336},
+ Year = {2003}
+}
+
+@InProceedings{ fernandez-moubachir-03b,
+ Author = {Fern{\'a}ndez, M.A. and Moubachir, M.},
+ BookTitle = {Second M.I.T. Conference on Computational Fluid and Solid
+ Mechanics},
+ code = {fsi8},
+ Editor = {K.J. Bathe},
+ Pages = {1337-1341},
+ Publisher = {Elsevier},
+ Title = {An exact Block-Newton algorithm for the solution of
+ implicit time discretized coupled systems involved in
+ fluid-structure interaction problems},
+ Year = {2003}
+}
+
+###InProceedings{ fernandez-moubachir-03b,
+ Author = {Fern{\'a}ndez, M.A. and Moubachir, M.},
+ BookTitle = {Second M.I.T. Conference on Computational Fluid and Solid
+ Mechanics},
+ code = {fsi8},
+ Editor = {K.J. Bathe},
+ Pages = {1337-1341},
+ Publisher = {Elsevier},
+ Title = {An exact Block-Newton algorithm for the solution of
+ implicit time discretized coupled systems involved in
+ fluid-structure interaction problems},
+ Year = {2003}
+}
+
+@InProceedings{ fernandez-moubachir-04,
+ Address = {Jyv{\"a}skyl{\"a}, Finland},
+ Author = {Fern{\'a}ndez, M. A. and Moubachir, M.},
+ BookTitle = {4$^{\mathrm{th}}$ European Congress on Computational
+ Methods in Applied Sciences and Engineering},
+ Editor = {Neittaanm{\"a}ki, P and Rossi, T. and Majava, K. and
+ Pironneau, O.},
+ Month = {July},
+ Title = {Numerical Simulation of Fluid-structure Systems via
+ {N}ewton's Method with Exact {J}acobians},
+ Volume = {1},
+ Year = {2004}
+}
+
+###InProceedings{ fernandez-moubachir-04,
+ Address = {Jyv{\"a}skyl{\"a}, Finland},
+ Author = {Fern{\'a}ndez, M. A. and Moubachir, M.},
+ BookTitle = {4$^{\mathrm{th}}$ European Congress on Computational
+ Methods in Applied Sciences and Engineering},
+ Editor = {Neittaanm{\"a}ki, P and Rossi, T. and Majava, K. and
+ Pironneau, O.},
+ Month = {July},
+ Title = {Numerical Simulation of Fluid-structure Systems via
+ {N}ewton's Method with Exact {J}acobians},
+ Volume = {1},
+ Year = {2004}
+}
+
+@Article{ fernandez-moubachir-05,
+ Author = {Fern{\'a}ndez, M.A. and Moubachir, M.},
+ Journal = {Comp. \& Struct.},
+ Pages = {127-142},
+ Title = {A {N}ewton method using exact {Jacobians} for solving
+ fluid-structure coupling},
+ Volume = {83},
+ Year = {2005}
+}
+
+###Article{ fernandez-moubachir-05,
+ Author = {Fern{\'a}ndez, M.A. and Moubachir, M.},
+ Journal = {Comp. \& Struct.},
+ Pages = {127-142},
+ Title = {A {N}ewton method using exact {Jacobians} for solving
+ fluid-structure coupling},
+ Volume = {83},
+ Year = {2005}
+}
+
+@Unpublished{ fernandez-moura-vergara-05,
+ Author = {Fern\'{a}ndez, M. and Moura, A. and Vergara, C.},
+ Note = {in this proceedings},
+ Title = {Defective boundary conditions applied to multiscale
+ analysis of blood flow}
+}
+
+###Unpublished{ fernandez-moura-vergara-05,
+ Author = {Fern\'{a}ndez, M. and Moura, A. and Vergara, C.},
+ Note = {in this proceedings},
+ Title = {Defective boundary conditions applied to multiscale
+ analysis of blood flow}
+}
+
+@Article{ fernandez07_semiimplicit,
+ Author = "Fern\'{a}ndez, M.~A. and Gerbeau, J.-F. and Grandmont, C.",
+ Title = "A projection semi-implicit scheme for the coupling of an
+ elastic structure with an incompressible fluid",
+ Journal = ijnme,
+ Volume = "69",
+ Number = "4",
+ Pages = "794--821",
+ Year = "2007"
+}
+
+###Article{ fernandez07_semiimplicit,
+ Author = "Fern\'{a}ndez, M.~A. and Gerbeau, J.-F. and Grandmont, C.",
+ Title = "A projection semi-implicit scheme for the coupling of an
+ elastic structure with an incompressible fluid",
+ Journal = ijnme,
+ Volume = "69",
+ Number = "4",
+ Pages = "794--821",
+ Year = "2007"
+}
+
+@Article{ fernandez1982,
+ Title = {Myocardial fiber architecture of the human heart
+ ventricles},
+ Author = {Fernandez-Teran, M.A. and Hurle, J.M.},
+ Journal = {The Anatomical Record},
+ Volume = {204},
+ Number = {2},
+ Pages = {137--147},
+ Year = {1982},
+ Publisher = {Wiley Online Library}
+}
+
+@Article{ fernandez2007projection,
+ Title = {A projection semi-implicit scheme for the coupling of an
+ elastic structure with an incompressible fluid},
+ Author = {Fern{\'a}ndez, Miguel Angel and Gerbeau, J-F and
+ Grandmont, C{\'e}line},
+ Journal = {International Journal for Numerical Methods in
+ Engineering},
+ Volume = {69},
+ Number = {4},
+ Pages = {794--821},
+ Year = {2007},
+ Publisher = {Wiley Online Library}
+}
+
+@Article{ fernandez2015fully,
+ Title = {Fully decoupled time-marching schemes for incompressible
+ fluid/thin-walled structure interaction},
+ Author = {Fern{\'a}ndez, Miguel A and Landajuela, Mikel and
+ Vidrascu, Marina},
+ Journal = {Journal of Computational Physics},
+ Volume = {297},
+ Pages = {156--181},
+ Year = {2015},
+ Publisher = {Elsevier}
+}
+
+@InCollection{ fernandez_derivation_2009,
+ langid = {english},
+ Location = {{Milano}},
+ Title = {The Derivation of the Equations for Fluids and Structure},
+ ISBN = {978-88-470-1152-6},
+ URL = {https://doi.org/10.1007/978-88-470-1152-6_3},
+ Abstract = {In this chapter we derive the equations governing the
+ mechanics of the fluid (the blood) and the structure (the
+ vessel wall). The derivation will be made in a rigorous
+ way, yet trying to provide the reader a physical
+ understanding. Reason of space obliged us to focus on the
+ most important models for haemodynamic computations and to
+ omit several details and the proofs of the propositions.
+ For instance, all issues related to energy conservation
+ principles have been ignored and we have eventually
+ considered only incompressible fluids.},
+ BookTitle = {Cardiovascular {{Mathematics}}: {{Modeling}} and
+ Simulation of the Circulatory System},
+ Series = {{{MS}}\&{{A}}},
+ Publisher = {{Springer Milan}},
+ URLDate = {2019-02-17},
+ Year = {2009},
+ Pages = {77-121},
+ Author = {Fernández, Miguel A. and Formaggia, Luca and Gerbeau,
+ Jean-Frederic and Quarteroni, Alfio},
+ Editor = {Formaggia, Luca and Quarteroni, Alfio and Veneziani,
+ Alessandro},
+ DOI = {10.1007/978-88-470-1152-6_3}
+}
+
+@Article{ fernandez_linear_2003,
+ langid = {english},
+ Title = {Linear Stability Analysis in FluidâStructure Interaction
+ with Transpiration. {{Part I}}: {{Formulation}} and
+ Mathematical Analysis},
+ Volume = {192},
+ ISSN = {00457825},
+ URL = {https://linkinghub.elsevier.com/retrieve/pii/S0045782503004614},
+ DOI = {10.1016/j.cma.2003.07.001},
+ ShortTitle = {Linear Stability Analysis in FluidâStructure Interaction
+ with Transpiration. {{Part I}}},
+ Abstract = {The aim of this work is to provide a new Linearization
+ Principle approach particularly suited for problems in
+ ï¬uidâstructure stability. The complexity here, and the
+ main diï¬erence with respect to the classical approach,
+ comes from the fact that the full non-linear ï¬uid
+ equations are written in a moving (i.e. time dependent)
+ domain. The underlying idea of our approach uses
+ transpiration techniques [J. Fluid Mech. 4 (1958) 383; G.
+ Mortch el ewicz, Application of linearized Euler equations
+ to ï¬utter, in: 85th AGARD SMP Meeting, Aalborg, Denmark,
+ 1997; P. Raj, B. Harris, Using surface transpiration with
+ an Euler method for cost-eï¬ective aerodynamic analysis,
+ in: AIAA 24th Applied Aerodynamics Conference, number
+ 93-3506, Monterey, Canada, 1993; AIAA 27(6) (1989) 777],
+ with the formalization and linearization recently developed
+ in [R ev. Europ eenne E l em. Finis, 9(6â7) (2000) 681,
+ A. Dervieux (Ed.), FluidâStructure Interaction, Kogan
+ Page Science, London, 2003 (Chapter 3)]. This allows us to
+ obtain a new grid independent coupled spectral problem
+ involving the linearized NavierâStokes equations and
+ those of a reduced linear structure. The coupling is
+ realized through speciï¬c transpiration conditions acting
+ on a ï¬xed interface, while keeping a ï¬xed ï¬uid
+ domain. We provide a rigorous mathematical treatment of
+ this eigenproblem. We prove that the corresponding
+ eigenmodes, characterizing the free evolution of the
+ system, can be obtained from the characteristic values of a
+ compact operator acting on a Hilbert space. Moreover, we
+ localize the eigenfrequencies of the system in a parabolic
+ region of the complex plan centered along the positive real
+ axis.},
+ Number = {43},
+ JournalTitle = {Computer Methods in Applied Mechanics and Engineering},
+ URLDate = {2019-08-24},
+ Date = {2003-10},
+ Pages = {4805-4835},
+ Author = {Fernández, Miguel Ãngel and Le Tallec, Patrick}
+}
+
+@Article{ fernandez_projection_2007,
+ Title = {A Projection Semi-Implicit Scheme for the Coupling of an
+ Elastic Structure with an Incompressible Fluid},
+ Volume = {69},
+ Number = {4},
+ JournalTitle = {International Journal for Numerical Methods in
+ Engineering},
+ Date = {2007},
+ Pages = {794-821},
+ Author = {Fernández, Miguel Angel and Gerbeau, J-F and Grandmont,
+ Celine},
+ Publisher = {{Wiley Online Library}}
+}
+
+@Article{ fernandezgerbeaumartin08,
+ Author = "Fern\'{a}ndez, M.~A. and Gerbeau, J.-F. and Martin, V.",
+ Title = "Numerical Simulation of blood flows through a porous
+ interface",
+ Journal = m2an,
+ Volume = "42",
+ Number = "6",
+ Pages = "961--990",
+ Year = "2008"
+}
+
+###Article{ fernandezgerbeaumartin08,
+ Author = "Fern\'{a}ndez, M.~A. and Gerbeau, J.-F. and Martin, V.",
+ Title = "Numerical Simulation of blood flows through a porous
+ interface",
+ Journal = m2an,
+ Volume = "42",
+ Number = "6",
+ Pages = "961--990",
+ Year = "2008"
+}
+
+@Article{ ferreira2014jcmr,
+ Title = {In vivo cardiovascular magnetic resonance diffusion tensor
+ imaging shows evidence of abnormal myocardial laminar
+ orientations and mobility in hypertrophic cardiomyopathy.},
+ Author = {Ferreira, Pedro F. and Kilner, Philip J. and McGill,
+ Laura-Ann and Nielles-Vallespin, Sonia and Scott, Andrew D.
+ and Ho, Siew Y. and McCarthy, Karen P. and Haba, Margarita
+ M. and Ismail, Tevfik F. and Gatehouse, Peter D. and {de
+ Silva}, Ranil and Lyon, Alexander R. and Prasad, Sanjay K.
+ and Firmin, David N. and Pennell, Dudley J.},
+ Journal = {J Cardiovasc Magn Reson},
+ Year = {2014},
+ Pages = {87},
+ Volume = {16},
+ Abstract = {Cardiac diffusion tensor imaging (cDTI) measures the
+ magnitudes and directions of intramyocardial water
+ diffusion. Assuming the cross-myocyte components to be
+ constrained by the laminar microstructures of myocardium,
+ we hypothesized that cDTI at two cardiac phases might
+ identify any abnormalities of laminar orientation and
+ mobility in hypertrophic cardiomyopathy (HCM).We performed
+ cDTI in vivo at 3 Tesla at end-systole and late diastole in
+ 11 healthy controls and 11 patients with HCM, as well as
+ late gadolinium enhancement (LGE) for detection of regional
+ fibrosis.Voxel-wise analysis of diffusion tensors relative
+ to left ventricular coordinates showed expected transmural
+ changes of myocardial helix-angle, with no significant
+ differences between phases or between HCM and control
+ groups. In controls, the angle of the second eigenvector of
+ diffusion (E2A) relative to the local wall tangent plane
+ was larger in systole than diastole, in accord with
+ previously reported changes of laminar orientation. HCM
+ hearts showed higher than normal global E2A in systole
+ (63.9° vs 56.4° controls, p=0.026) and markedly raised
+ E2A in diastole (46.8° vs 24.0° controls, p<0.001). In
+ hypertrophic regions, E2A retained a high, systole-like
+ angulation even in diastole, independent of LGE, while
+ regions of normal wall thickness did not (LGE present
+ 57.8°, p=0.0028, LGE absent 54.8°, p=0.0022 vs normal
+ thickness 38.1°).In healthy controls, the angles of
+ cross-myocyte components of diffusion were consistent with
+ previously reported transmural orientations of laminar
+ microstructures and their changes with contraction. In HCM,
+ especially in hypertrophic regions, they were consistent
+ with hypercontraction in systole and failure of relaxation
+ in diastole. Further investigation of this finding is
+ required as previously postulated effects of strain might
+ be a confounding factor.},
+ DOI = {10.1186/s12968-014-0087-8},
+ Institution = {pton Hospital and Imperial College, London, UK.
+ d.firmin@ic.ac.uk.},
+ Keywords = {Aged; Cardiomyopathy, Hypertrophic,
+ diagnosis/pathology/physiopathology; Case-Control Studies;
+ Diffusion Magnetic Resonance Imaging; Diffusion Tensor
+ Imaging; Female; Fibrosis; Humans; Image Interpretation,
+ Computer-Assisted; Magnetic Resonance Imaging, Cine; Male;
+ Middle Aged; Myocardial Contraction; Myocardium, pathology;
+ Predictive Value of Tests; Ventricular Function, Left},
+ Language = {eng},
+ medline-pst = {epublish},
+ owner = {stoeckc},
+ pii = {s12968-014-0087-8},
+ pmid = {25388867},
+ timestamp = {2015.07.24},
+ URL = {http://dx.doi.org/10.1186/s12968-014-0087-8}
+}
+
+@Article{ ferruzzi2011on,
+ Title = {On constitutive descriptors of the biaxial mechanical
+ behaviour of human abdominal aorta and aneurysms.},
+ Author = {Ferruzzi, J. and Vorp, D.A. and Humphrey, J.D.},
+ Journal = {Journal of the Royal Society Interface},
+ Volume = {8},
+ Number = {56},
+ Pages = {435-50},
+ Year = {2011},
+ Abstract = {The abdominal aorta (AA) in older individuals can develop
+ an aneurysm, which is of increasing concern in our ageing
+ population. The structural integrity of the ageing aortic
+ wall, and hence aneurysm, depends primarily on effective
+ elastin and multiple families of oriented collagen fibres.
+ In this paper, we show that a structurally motivated
+ phenomenological 'four-fibre family' constitutive relation
+ captures the biaxial mechanical behaviour of both the human
+ AA, from ages less than 30 to over 60, and abdominal aortic
+ aneurysms. Moreover, combining the statistical technique
+ known as non-parametric bootstrap with a modal clustering
+ method provides improved confidence intervals for estimated
+ best-fit values of the eight associated constitutive
+ parameters. It is suggested that this constitutive relation
+ captures the well-known loss of structural integrity of
+ elastic fibres owing to ageing and the development of
+ abdominal aneurysms, and that it provides important insight
+ needed to construct growth and remodelling models for
+ aneurysms, which in turn promise to improve our ability to
+ predict disease progression. }
+}
+
+###Article{ ferruzzi2011on,
+ Title = {On constitutive descriptors of the biaxial mechanical
+ behaviour of human abdominal aorta and aneurysms.},
+ Author = {Ferruzzi, J. and Vorp, D.A. and Humphrey, J.D.},
+ Journal = {Journal of the Royal Society Interface},
+ Volume = {8},
+ Number = {56},
+ Pages = {435-50},
+ Year = {2011},
+ Abstract = {The abdominal aorta (AA) in older individuals can develop
+ an aneurysm, which is of increasing concern in our ageing
+ population. The structural integrity of the ageing aortic
+ wall, and hence aneurysm, depends primarily on effective
+ elastin and multiple families of oriented collagen fibres.
+ In this paper, we show that a structurally motivated
+ phenomenological 'four-fibre family' constitutive relation
+ captures the biaxial mechanical behaviour of both the human
+ AA, from ages less than 30 to over 60, and abdominal aortic
+ aneurysms. Moreover, combining the statistical technique
+ known as non-parametric bootstrap with a modal clustering
+ method provides improved confidence intervals for estimated
+ best-fit values of the eight associated constitutive
+ parameters. It is suggested that this constitutive relation
+ captures the well-known loss of structural integrity of
+ elastic fibres owing to ageing and the development of
+ abdominal aneurysms, and that it provides important insight
+ needed to construct growth and remodelling models for
+ aneurysms, which in turn promise to improve our ability to
+ predict disease progression. }
+}
+
+@Article{ fezoui-85,
+ Author = {Fezoui, F.},
+ Journal = {Research report INRIA},
+ Title = {R{\'e}solution des {\'e}quations d'{E}uler par un
+ sch{\'e}ma de van {L}eer en {\'e}l{\'e}ments finis},
+ Volume = {358},
+ Year = {1985}
+}
+
+###Article{ fezoui-85,
+ Author = {Fezoui, F.},
+ Journal = {Research report INRIA},
+ Title = {R{\'e}solution des {\'e}quations d'{E}uler par un
+ sch{\'e}ma de van {L}eer en {\'e}l{\'e}ments finis},
+ Volume = {358},
+ Year = {1985}
+}
+
+@Unpublished{ figueroa-vignon-kenneth-jansen-hughes-taylor-xx,
+ Author = {Figueroa, A. and Vignon-Clementel, I. and Jansen, K.E. and
+ Hughes, T.J.R. and Taylor, C.A.},
+ Note = { To appear in {\it Comput. Methods Appl. Mech. Engrg.}},
+ Title = {A coupled momentum method for modeling blood flow in
+ three-dimensional deformable arteries}
+}
+
+###Unpublished{ figueroa-vignon-kenneth-jansen-hughes-taylor-xx,
+ Author = {Figueroa, A. and Vignon-Clementel, I. and Jansen, K.E. and
+ Hughes, T.J.R. and Taylor, C.A.},
+ Note = { To appear in {\it Comput. Methods Appl. Mech. Engrg.}},
+ Title = {A coupled momentum method for modeling blood flow in
+ three-dimensional deformable arteries}
+}
+
+@Article{ figueroa2009cmame,
+ Title = {A computational framework for fluid?solid-growth modeling
+ in cardiovascular simulations },
+ Author = {C. Alberto Figueroa and Seungik Baek and Charles A. Taylor
+ and Jay D. Humphrey},
+ Journal = {Computer Methods in Applied Mechanics and Engineering },
+ Year = {2009},
+ Note = {Models and Methods in Computational Vascular and
+ Cardiovascular Mechanics },
+ Number = {45?46},
+ Pages = {3583 - 3602},
+ Volume = {198},
+ Abstract = {It is now well known that altered hemodynamics can alter
+ the genes that are expressed by diverse vascular cells,
+ which in turn plays a critical role in the ability of a
+ blood vessel to adapt to new biomechanical conditions and
+ governs the natural history of the progression of many
+ types of disease. Fortunately, when taken together, recent
+ advances in molecular and cell biology, in vivo medical
+ imaging, biomechanics, computational mechanics, and
+ computing power provide an unprecedented opportunity to
+ begin to understand such hemodynamic effects on vascular
+ biology, physiology, and pathophysiology. Moreover, with
+ increased understanding will come the promise of improved
+ designs for medical devices and clinical interventions. The
+ goal of this paper, therefore, is to present a new
+ computational framework that brings together recent
+ advances in computational biosolid and biofluid mechanics
+ that can exploit new information on the biology of vascular
+ growth and remodeling as well as in vivo patient- specific
+ medical imaging so as to enable realistic simulations of
+ vascular adaptations, disease progression, and clinical
+ intervention. },
+ DOI = {http://dx.doi.org/10.1016/j.cma.2008.09.013},
+ File = {figueroa09.pdf:figueroa09.pdf:PDF},
+ ISSN = {0045-7825},
+ Keywords = {Artery},
+ timestamp = {2015/09/22},
+ URL = {http://www.sciencedirect.com/science/article/pii/S004578250800340X}
+}
+
+@Article{ figueroa_coupled_2006,
+ langid = {english},
+ Title = {A Coupled Momentum Method for Modeling Blood Flow in
+ Three-Dimensional Deformable Arteries},
+ Volume = {195},
+ ISSN = {00457825},
+ URL = {https://linkinghub.elsevier.com/retrieve/pii/S004578250500513X},
+ DOI = {10.1016/j.cma.2005.11.011},
+ Abstract = {Blood velocity and pressure ï¬elds in large arteries are
+ greatly inï¬uenced by the deformability of the vessel.
+ Moreover, wave propagation phenomena in the cardiovascular
+ system can only be described considering wall deformability
+ since blood is usually described as an incompressible
+ ï¬uid. However, computational methods for simulating blood
+ ï¬ow in three-dimensional models of arteries have either
+ considered a rigid wall assumption for the vessel or
+ signiï¬cantly simpliï¬ed or reduced geometries. Computing
+ blood ï¬ow in deformable domains using standard techniques
+ like the ALE method remains a formidable problem for large,
+ realistic anatomic and physiologic models of the
+ cardiovascular system.},
+ Number = {41-43},
+ JournalTitle = {Computer Methods in Applied Mechanics and Engineering},
+ URLDate = {2019-08-24},
+ Date = {2006-08},
+ Pages = {5685-5706},
+ Author = {Figueroa, C. Alberto and Vignon-Clementel, Irene E. and
+ Jansen, Kenneth E. and Hughes, Thomas J.R. and Taylor,
+ Charles A.}
+}
+
+@Article{ fleming-97,
+ Author = {Fleming, Wendell H.},
+ Journal = {Annali della Scuola Normale Superiore di Pisa - Classe di
+ Scienze},
+ Pages = {435--454},
+ Title = {Deterministic nonlinear filtering},
+ Volume = {25},
+ Year = {1997}
+}
+
+###Article{ fleming-97,
+ Author = {Fleming, Wendell H.},
+ Journal = {Annali della Scuola Normale Superiore di Pisa - Classe di
+ Scienze},
+ Pages = {435--454},
+ Title = {Deterministic nonlinear filtering},
+ Volume = {25},
+ Year = {1997}
+}
+
+@Article{ foias-saut-84,
+ Author = {Foias, C. and Saut, J.C.},
+ Journal = {Ind. Univ. Math. J.},
+ Number = {3},
+ Pages = {459-471},
+ Title = {Asymptotic behaviour, as $t\longrightarrow+\infty$ of
+ solutions of {Navier-Stokes} equations and nonlinear
+ spectral manifolds},
+ Volume = {33},
+ Year = {1984}
+}
+
+###Article{ foias-saut-84,
+ Author = {Foias, C. and Saut, J.C.},
+ Journal = {Ind. Univ. Math. J.},
+ Number = {3},
+ Pages = {459-471},
+ Title = {Asymptotic behaviour, as $t\longrightarrow+\infty$ of
+ solutions of {Navier-Stokes} equations and nonlinear
+ spectral manifolds},
+ Volume = {33},
+ Year = {1984}
+}
+
+@Article{ fomovsky2010jmcc,
+ Title = {Contribution of extracellular matrix to the mechanical
+ properties of the heart },
+ Author = {Gregory M. Fomovsky and Stavros Thomopoulos and Jeffrey W.
+ Holmes},
+ Journal = {Journal of Molecular and Cellular Cardiology },
+ Year = {2010},
+ Note = {Special Issue: Extracellular Matrix },
+ Number = {3},
+ Pages = {490 - 496},
+ Volume = {48},
+ Abstract = {Extracellular matrix (ECM) components play essential roles
+ in development, remodeling, and signaling in the
+ cardiovascular system. They are also important in
+ determining the mechanics of blood vessels, valves,
+ pericardium, and myocardium. The goal of this brief review
+ is to summarize available information regarding the
+ mechanical contributions of \{ECM\} in the myocardium.
+ Fibrillar collagen, elastin, and proteoglycans all play
+ crucial mechanical roles in many tissues in the body
+ generally and in the cardiovascular system specifically.
+ The myocardium contains all three components, but their
+ mechanical contributions are relatively poorly understood.
+ Most studies of \{ECM\} contributions to myocardial
+ mechanics have focused on collagen, but quantitative
+ prediction of mechanical properties of the myocardium, or
+ changes in those properties with disease, from measured
+ tissue structure is not yet possible. Circumstantial
+ evidence suggests that the mechanics of cardiac elastin and
+ proteoglycans merit further study. Work in other tissues
+ used a combination of correlation, modification or
+ digestion, and mathematical modeling to establish
+ mechanical roles for specific \{ECM\} components; this work
+ can provide guidance for new experiments and modeling
+ studies in myocardium. },
+ DOI = {http://dx.doi.org/10.1016/j.yjmcc.2009.08.003},
+ File = {fomovsky10.pdf:fomovsky10.pdf:PDF},
+ ISSN = {0022-2828},
+ Keywords = {Collagen},
+ timestamp = {2015/09/23},
+ URL = {http://www.sciencedirect.com/science/article/pii/S0022282809003253}
+}
+
+@Article{ formaggia-gerbeau-nobile-quarteroni-01,
+ Author = {Formaggia, L. and Gerbeau, J-F. and Nobile, F. and
+ Quarteroni, A.},
+ Journal = {Comp. Meth. Appl. Mech. Engrg.},
+ Number = {6-7},
+ Pages = {561-582},
+ Title = {On the Coupling of {3D} and {1D} {Navier-Stokes} equations
+ for Flow Problems in Compliant Vessels},
+ Volume = {191},
+ Year = {2001}
+}
+
+###Article{ formaggia-gerbeau-nobile-quarteroni-01,
+ Author = {Formaggia, L. and Gerbeau, J-F. and Nobile, F. and
+ Quarteroni, A.},
+ Journal = {Comp. Meth. Appl. Mech. Engrg.},
+ Number = {6-7},
+ Pages = {561-582},
+ Title = {On the Coupling of {3D} and {1D} {Navier-Stokes} equations
+ for Flow Problems in Compliant Vessels},
+ Volume = {191},
+ Year = {2001}
+}
+
+@Article{ formaggia-gerbeau-nobile-quarteroni-02,
+ Author = {Formaggia, L. and Gerbeau, J-F. and Nobile, F. and
+ Quarteroni, A.},
+ Journal = {SIAM J. Numerical Analysis},
+ Number = {1},
+ Pages = {376-401},
+ Title = {Numerical treatment of defective boundary conditions for
+ the {Navier-Stokes} equations},
+ Volume = {40},
+ Year = {2002}
+}
+
+###Article{ formaggia-gerbeau-nobile-quarteroni-02,
+ Author = {Formaggia, L. and Gerbeau, J-F. and Nobile, F. and
+ Quarteroni, A.},
+ Journal = {SIAM J. Numerical Analysis},
+ Number = {1},
+ Pages = {376-401},
+ Title = {Numerical treatment of defective boundary conditions for
+ the {Navier-Stokes} equations},
+ Volume = {40},
+ Year = {2002}
+}
+
+@Article{ formaggia-lamponi-quarteroni-2003,
+ Title = {One-dimensional models for blood flow in arteries},
+ Volume = {47},
+ Number = {3},
+ Journal = {Journal of Engineering Mathematics},
+ Publisher = {Springer},
+ Author = {Formaggia, L. and Lamponi, D. and Quarteroni, A.},
+ Year = {2003},
+ Pages = {251--276}
+}
+
+###Article{ formaggia-lamponi-quarteroni-2003,
+ Title = {One-dimensional models for blood flow in arteries},
+ Volume = {47},
+ URL = {http://www.springerlink.com/openurl.asp?id=doi:10.1023/B:ENGI.0000007980.01347.29},
+ Number = {3},
+ Journal = {Journal of Engineering Mathematics},
+ Publisher = {Springer},
+ Author = {Formaggia, L. and Lamponi, D. and Quarteroni, A.},
+ Year = {2003},
+ Pages = {251--276}
+}
+
+@Article{ formaggia-moura-nobile-07,
+ Author = {Formaggia, L. and Moura, A. and Nobile, F.},
+ Journal = {ESAIM-Mathematical Modelling and Numerical Analysis},
+ Number = {4},
+ Pages = {743--770},
+ Publisher = {Paris: EDP Sciences, SMAI, c1999-},
+ Title = {On the stability of the coupling of 3D and 1D
+ fluid-structure interaction models for blood flow
+ simulations},
+ Volume = {41},
+ Year = {2007}
+}
+
+###Article{ formaggia-moura-nobile-07,
+ Author = {Formaggia, L. and Moura, A. and Nobile, F.},
+ Journal = {ESAIM-Mathematical Modelling and Numerical Analysis},
+ Number = {4},
+ Pages = {743--770},
+ Publisher = {Paris: EDP Sciences, SMAI, c1999-},
+ Title = {On the stability of the coupling of 3D and 1D
+ fluid-structure interaction models for blood flow
+ simulations},
+ Volume = {41},
+ Year = {2007}
+}
+
+@Article{ formaggia-nobile-99,
+ Author = {Formaggia, L. and Nobile, F.},
+ code = {mob9},
+ Journal = {East-West J. Numer. Math.},
+ Number = {2},
+ Pages = {105--131},
+ Title = {A stability analysis for the arbitrary {L}agrangian
+ {E}ulerian formulation with finite elements},
+ Volume = {7},
+ Year = {1999}
+}
+
+###Article{ formaggia-nobile-99,
+ Author = {Formaggia, L. and Nobile, F.},
+ code = {mob9},
+ Journal = {East-West J. Numer. Math.},
+ Number = {2},
+ Pages = {105--131},
+ Title = {A stability analysis for the arbitrary {L}agrangian
+ {E}ulerian formulation with finite elements},
+ Volume = {7},
+ Year = {1999}
+}
+
+@Book{ formaggia-quarteroni-veneziani-09,
+ Editor = {Formaggia, L. and Quarteroni, A. and Veneziani, A.},
+ Publisher = {Springer},
+ Series = {Modeling, Simulation and Applications},
+ Title = {Cardiovascular {M}athematics. {M}odeling and simulation of
+ the circulatory system},
+ Volume = {1},
+ Year = {2009}
+}
+
+###Book{ formaggia-quarteroni-veneziani-09,
+ Editor = {Formaggia, L. and Quarteroni, A. and Veneziani, A.},
+ Publisher = {Springer},
+ Series = {Modeling, Simulation and Applications},
+ Title = {Cardiovascular {M}athematics. {M}odeling and simulation of
+ the circulatory system},
+ Volume = {1},
+ Year = {2009}
+}
+
+@InBook{ formaggia2009book,
+ Author = {Formaggia, L. and Quarteroni, A. and Veneziani, A.},
+ date-modified = {2012-05-01 13:06:48 +0000},
+ Title = {Cardiovascular Mathematics. Modeling and simulation of the
+ circulatory system},
+ Year = {2009},
+ Publisher = {Springer},
+ Volume = {1}
+}
+
+@Book{ formaggia2010cardiovascular,
+ Title = {Cardiovascular Mathematics: Modeling and simulation of the
+ circulatory system},
+ Author = {Formaggia, Luca and Quarteroni, Alfio and Veneziani,
+ Alessandro},
+ Volume = {1},
+ Year = {2010},
+ Publisher = {Springer Science \& Business Media}
+}
+
+@Collection{ formaggia_cardiovascular_2009,
+ langid = {english},
+ Location = {{Milano}},
+ Title = {Cardiovascular {{Mathematics}}},
+ ISBN = {978-88-470-1151-9 978-88-470-1152-6},
+ URL = {http://link.springer.com/10.1007/978-88-470-1152-6},
+ Publisher = {{Springer Milan}},
+ URLDate = {2019-02-17},
+ Date = {2009},
+ Editor = {Formaggia, Luca and Quarteroni, Alfio and Veneziani,
+ Alessandro},
+ DOI = {10.1007/978-88-470-1152-6}
+}
+
+###Collection{ formaggia_cardiovascular_2009,
+ langid = {english},
+ Location = {{Milano}},
+ Title = {Cardiovascular {{Mathematics}}},
+ ISBN = {978-88-470-1151-9 978-88-470-1152-6},
+ URL = {http://link.springer.com/10.1007/978-88-470-1152-6},
+ Publisher = {{Springer Milan}},
+ URLDate = {2019-02-17},
+ Year = {2009},
+ Editor = {Formaggia, Luca and Quarteroni, Alfio and Veneziani,
+ Alessandro},
+ DOI = {10.1007/978-88-470-1152-6}
+}
+
+@InCollection{ formaggia_multiscale_2009,
+ langid = {english},
+ Location = {{Milano}},
+ Title = {Multiscale Models of the Vascular System},
+ ISBN = {978-88-470-1152-6},
+ URL = {https://doi.org/10.1007/978-88-470-1152-6_11},
+ Abstract = {As we have illustrated in the previous chapters, there are
+ essentially three classes of models for the vascular
+ system: fully three dimensional models, based on the
+ Navier-Stokes (NS) equations, one dimensional models,
+ including the space dependence on the vessel axial
+ coordinate, based on the Euler (E) equations, and the
+ lumped parameter or zero-dimensional models, based on the
+ Kirchhoff laws (K) for hydraulic networks. Navier-Stokes
+ based models can account for many different features of
+ blood flow problems, such as the blood rheology (Chapter
+ 6), the vascular wall dynamics (Chapter 3), the interaction
+ between blood flow and wall deformation (Chapters 8 and 9).
+ These models are perfectly adequate for investigating
+ qualitatively and quantitatively the effects of the
+ geometry on the blood flow (Chapters 5) and the possible
+ relations between local haemodynamics and the development
+ of some pathologies (Chapter 1). On the other hand, the
+ high computational costs (Chapters 2, 3 and 9) restrict
+ their use to cover few contiguous vascular districts
+ only.},
+ BookTitle = {Cardiovascular {{Mathematics}}: {{Modeling}} and
+ Simulation of the Circulatory System},
+ Series = {{{MS}}\&{{A}}},
+ Publisher = {{Springer Milan}},
+ URLDate = {2019-02-18},
+ Year = {2009},
+ Pages = {395-446},
+ Author = {Formaggia, Luca and Quarteroni, Alfio and Veneziani,
+ Alessandro},
+ Editor = {Formaggia, Luca and Quarteroni, Alfio and Veneziani,
+ Alessandro},
+ DOI = {10.1007/978-88-470-1152-6_11}
+}
+
+@Article{ formaggia_new_2008,
+ Title = {A New Approach to Numerical Solution of Defective Boundary
+ Value Problems in Incompressible Fluid Dynamics},
+ Volume = {46},
+ Number = {6},
+ JournalTitle = {SIAM Journal on Numerical Analysis},
+ Year = {2008},
+ Pages = {2769--2794},
+ Author = {Formaggia, Luca and Veneziani, Alessandro and Vergara,
+ Christian}
+}
+
+@Article{ formaggia_numerical_2002,
+ Title = {Numerical Treatment of Defective Boundary Conditions for
+ the Navier-Stokes Equations},
+ Volume = {40},
+ Number = {1},
+ JournalTitle = {SIAM Journal on Numerical Analysis},
+ Year = {2002},
+ Pages = {376--401},
+ Author = {Formaggia, Luca and Gerbeau, Jean-Frederic and Nobile,
+ Fabio and Quarteroni, Alfio}
+}
+
+@Article{ formaggia_numerical_2006,
+ Title = {Numerical Modeling of {{1D}} Arterial Networks Coupled
+ with a Lumped Parameters Description of the Heart},
+ Volume = {9},
+ Number = {5},
+ JournalTitle = {Computer methods in biomechanics and biomedical
+ engineering},
+ Year = {2006},
+ Pages = {273--288},
+ Author = {Formaggia, Luca and Lamponi, Daniele and Tuveri,
+ Massimiliano and Veneziani, Alessandro}
+}
+
+@Article{ forster-wall-ramm-07,
+ Author = {F{\"o}rster, C. and Wall, W.A. and Ramm, E.},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Number = {7},
+ Pages = {1278--1293},
+ Title = {Artificial added mass instabilities in sequential
+ staggered coupling of nonlinear structures and
+ incompressible viscous flows},
+ Volume = {196},
+ Year = {2007}
+}
+
+###Article{ forster-wall-ramm-07,
+ Author = {F{\"o}rster, C. and Wall, W.A. and Ramm, E.},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Number = {7},
+ Pages = {1278--1293},
+ Title = {Artificial added mass instabilities in sequential
+ staggered coupling of nonlinear structures and
+ incompressible viscous flows},
+ Volume = {196},
+ Year = {2007}
+}
+
+@Article{ foss-brady-00,
+ Author = {Foss, D.R. and Brady,J-F.},
+ code = {cel16},
+ Journal = {J. Fluid Mech.},
+ Pages = {167-200},
+ Title = {Structure, diffusion and rheology of Brownian suspensions
+ by Stokesian Dynamics simulation},
+ Volume = {407},
+ Year = {2000}
+}
+
+###Article{ foss-brady-00,
+ Author = {Foss, D.R. and Brady,J-F.},
+ code = {cel16},
+ Journal = {J. Fluid Mech.},
+ Pages = {167-200},
+ Title = {Structure, diffusion and rheology of Brownian suspensions
+ by Stokesian Dynamics simulation},
+ Volume = {407},
+ Year = {2000}
+}
+
+@Article{ fraccarollo12cardio,
+ Title = {Novel therapeutic approaches to post-infarction
+ remodelling},
+ Author = {Fraccarollo, Daniela and Galuppo, Paolo and Bauersachs,
+ Johann},
+ Journal = {Cardiovascular Research},
+ Year = {2012},
+ Abstract = {Adverse cardiac remodelling is a major cause of morbidity
+ and mortality following acute myocardial infarction (MI).
+ Mechanical and neurohumoral factors involved in structural
+ and molecular post-infarction remodelling were important
+ targets in research and treatment for years. More recently,
+ therapeutic strategies that address myocardial regeneration
+ and pathophysiological mechanisms of infarct wound healing
+ appear to be useful novel tools to prevent progressive
+ ventricular dilation, functional deterioration,
+ life-threatening arrhythmia, and heart failure. This review
+ provides an overview of future and emerging therapies for
+ cardiac wound healing and remodelling after MI.},
+ DOI = {10.1093/cvr/cvs109},
+ File = {fraccarollo12.pdf:fraccarollo12.pdf:PDF},
+ ISSN = {0008-6363},
+ Publisher = {The Oxford University Press},
+ timestamp = {2014/09/17}
+}
+
+@Article{ franca-dutra-do-carmo-89,
+ Author = {Franca, L.P. and Dutra do Carmo, E.G.},
+ Journal = {Comp. Meth. Appl. Mech. Eng.},
+ Pages = {41-54},
+ Title = {The {Galerkin} gradient least-squares method},
+ Volume = {74},
+ Year = {1989}
+}
+
+###Article{ franca-dutra-do-carmo-89,
+ Author = {Franca, L.P. and Dutra do Carmo, E.G.},
+ Journal = {Comp. Meth. Appl. Mech. Eng.},
+ Pages = {41-54},
+ Title = {The {Galerkin} gradient least-squares method},
+ Volume = {74},
+ Year = {1989}
+}
+
+@Article{ franca-frey-92,
+ Author = {Franca, L.P. and Frey, S.L.},
+ Journal = {Comp. Meth. Appl. Mech. Eng.},
+ Pages = {209-233},
+ Title = {{Stabilized finite element methods~: II. The
+ incompressible Navier-Stokes equations}},
+ Volume = {99},
+ Year = {1992}
+}
+
+###Article{ franca-frey-92,
+ Author = {Franca, L.P. and Frey, S.L.},
+ Journal = {Comp. Meth. Appl. Mech. Eng.},
+ Pages = {209-233},
+ Title = {{Stabilized finite element methods~: II. The
+ incompressible Navier-Stokes equations}},
+ Volume = {99},
+ Year = {1992}
+}
+
+@Article{ franca-frey-hughes-92,
+ Author = {Franca, L.P. and Frey, S.L. and Hughes, T.J.R.},
+ Journal = {Comp. Meth. Appl. Mech. Eng.},
+ Pages = {253-276},
+ Title = {{Stabilized finite element methods~: I. Application to the
+ advective-diffusive model}},
+ Volume = {95},
+ Year = {1992}
+}
+
+###Article{ franca-frey-hughes-92,
+ Author = {Franca, L.P. and Frey, S.L. and Hughes, T.J.R.},
+ Journal = {Comp. Meth. Appl. Mech. Eng.},
+ Pages = {253-276},
+ Title = {{Stabilized finite element methods~: I. Application to the
+ advective-diffusive model}},
+ Volume = {95},
+ Year = {1992}
+}
+
+@Article{ franca-hughes-93,
+ Author = {Franca, L.P. and Hughes, T.J.R.},
+ Journal = {Comp. Meth. Appl. Mech. Eng.},
+ Pages = {285-298},
+ Title = {Convergence analyses of {Galerkin} least-squares methods
+ for symmetric advective-diffusive forms of the {Stokes} and
+ incompressible {Navier-Stokes} equations},
+ Volume = {105},
+ Year = {1993}
+}
+
+###Article{ franca-hughes-93,
+ Author = {Franca, L.P. and Hughes, T.J.R.},
+ Journal = {Comp. Meth. Appl. Mech. Eng.},
+ Pages = {285-298},
+ Title = {Convergence analyses of {Galerkin} least-squares methods
+ for symmetric advective-diffusive forms of the {Stokes} and
+ incompressible {Navier-Stokes} equations},
+ Volume = {105},
+ Year = {1993}
+}
+
+@Unpublished{ franchitti-02,
+ Author = {Franchitti, A.},
+ Note = {Universit{\'e} Paris 6},
+ Title = {Rapport de stage de {DEA} (in {French})}
+}
+
+###Unpublished{ franchitti-02,
+ Author = {Franchitti, A.},
+ Note = {Universit{\'e} Paris 6},
+ Title = {Rapport de stage de {DEA} (in {French})}
+}
+
+@Article{ franck2014arxiv,
+ Title = {Sparse Variational Bayesian Approximations for Nonlinear
+ Inverse Problems: applications in nonlinear elastography},
+ Author = {Franck, I.M. and Koutsourelakis, P.S.},
+ Journal = {arXiv preprint arXiv:1412.0473},
+ Year = {2014}
+}
+
+@Article{ frank-1899,
+ Author = "Frank, O.",
+ Title = "{Die Grundform des arteriellen Pulses}",
+ Journal = "{Zeitschrift f\"ur Biologie}",
+ Volume = 37,
+ Pages = "483Ã526",
+ Year = "1899"
+}
+
+###Article{ frank-1899,
+ Author = "Frank, O.",
+ Title = "{Die Grundform des arteriellen Pulses}",
+ Journal = "{Zeitschrift f\"ur Biologie}",
+ Volume = 37,
+ Pages = "483Ã526",
+ Year = "1899"
+}
+
+###Article{ frank-1899,
+ Author = "Frank, O.",
+ Title = "{Die Grundform des arteriellen Pulses}",
+ Journal = "{Zeitschrift f\"ur Biologie}",
+ Volume = 37,
+ Pages = "483Ã526",
+ Year = "1899"
+}
+
+###Article{ frank-1899,
+ Author = "Frank, O.",
+ Title = "{Die Grundform des arteriellen Pulses}",
+ Journal = "{Zeitschrift f\"ur Biologie}",
+ Volume = 37,
+ Pages = "483Ã526",
+ Year = "1899"
+}
+
+@Manual{ freefem,
+ Author = {Hecht, F. and Pironneau, O. and Le Hyaric, A. and Ohtsuka,
+ K.},
+ Organization = {University of Paris 6},
+ Title = {FreeFem++ v. 2.11. User's Manual}
+}
+
+###Manual{ freefem,
+ Author = {Hecht, F. and Pironneau, O. and Le Hyaric, A. and Ohtsuka,
+ K.},
+ Organization = {University of Paris 6},
+ Title = {FreeFem++ v. 2.11. User's Manual}
+}
+
+@InProceedings{ frey-00,
+ Author = {P.J. Frey},
+ BookTitle = {Proc.of 9th Int. Meshing Roundtable, New Orleans, USA},
+ Title = {About surface remeshing},
+ Year = {2000}
+}
+
+###InProceedings{ frey-00,
+ Author = {P.J. Frey},
+ BookTitle = {Proc.of 9th Int. Meshing Roundtable, New Orleans, USA},
+ Title = {About surface remeshing},
+ Year = {2000}
+}
+
+@Article{ frey-borouchaki-03,
+ Author = {P.J. Frey and H. Borouchaki},
+ Journal = {Int. J. Numer. Methods Engng.},
+ Number = {2},
+ Pages = {227-245},
+ Title = {Surface meshing using a geometric error estimate},
+ Volume = {58},
+ Year = {2003}
+}
+
+###Article{ frey-borouchaki-03,
+ Author = {P.J. Frey and H. Borouchaki},
+ Journal = {Int. J. Numer. Methods Engng.},
+ Number = {2},
+ Pages = {227-245},
+ Title = {Surface meshing using a geometric error estimate},
+ Volume = {58},
+ Year = {2003}
+}
+
+@Book{ frey-george-00,
+ Author = {Frey, P.J. and George,P.L.},
+ Publisher = {Herm{\`e}s Science Publ., Paris, Oxford},
+ Title = {Mesh generation. Application to finite elements},
+ Year = {2000}
+}
+
+###Book{ frey-george-00,
+ Author = {Frey, P.J. and George,P.L.},
+ Publisher = {Herm{\`e}s Science Publ., Paris, Oxford},
+ Title = {Mesh generation. Application to finite elements},
+ Year = {2000}
+}
+
+@Article{ frydrychowicz_interdependencies_2012,
+ Title = {Interdependencies of Aortic Arch Secondary Flow Patterns,
+ Geometry, and Age Analysed by 4-Dimensional Phase Contrast
+ Magnetic Resonance Imaging at 3 {{Tesla}}},
+ Volume = {22},
+ Number = {5},
+ JournalTitle = {European radiology},
+ Year = {2012},
+ Pages = {1122--1130},
+ Author = {Frydrychowicz, Alex and Berger, Alexander and Del Rio,
+ Alejandro Munoz and Russe, Maximilian F. and Bock, Jelena
+ and Harloff, Andreas and Markl, Michael}
+}
+
+@Article{ fujita-kato-64,
+ Author = {Fujita, H. and Kato, T.},
+ Journal = {Arch. Rat. Mech. Anal.},
+ Pages = {269-315},
+ Title = {On the {Navier-Stokes} initial value problem, {I}},
+ Volume = {3},
+ Year = {1964}
+}
+
+###Article{ fujita-kato-64,
+ Author = {Fujita, H. and Kato, T.},
+ Journal = {Arch. Rat. Mech. Anal.},
+ Pages = {269-315},
+ Title = {On the {Navier-Stokes} initial value problem, {I}},
+ Volume = {3},
+ Year = {1964}
+}
+
+@Article{ funamoto-etal-08,
+ Title = {Numerical experiment for ultrasonic-measurement-integrated
+ simulation of three-dimensional unsteady blood flow},
+ Author = {Funamoto, K. and Hayase, T. and Saijo, Y. and Yambe, T.},
+ Journal = {Annals of biomedical engineering},
+ Volume = {36},
+ Number = {8},
+ Pages = {1383--1397},
+ Year = {2008},
+ Publisher = {Springer}
+}
+
+
+@article{funamoto2009numerical,
+ title={Numerical experiment of transient and steady characteristics of ultrasonic-measurement-integrated simulation in three-dimensional blood flow analysis},
+ author={Funamoto, Kenichi and Hayase, Toshiyuki and Saijo, Yoshifumi and Yambe, Tomoyuki},
+ journal={Annals of biomedical engineering},
+ volume={37},
+ number={1},
+ pages={34},
+ year={2009},
+ publisher={Springer}
+}
+
+
+###Article{ funamoto-etal-08,
+ Title = {Numerical experiment for ultrasonic-measurement-integrated
+ simulation of three-dimensional unsteady blood flow},
+ Author = {Funamoto, K. and Hayase, T. and Saijo, Y. and Yambe, T.},
+ Journal = {Annals of biomedical engineering},
+ Volume = {36},
+ Number = {8},
+ Pages = {1383--1397},
+ Year = {2008},
+ Publisher = {Springer}
+}
+
+@Article{ funamoto2009annals,
+ Title = {Numerical experiment for ultrasonic-measurement-integrated
+ simulation of three-dimensional unsteady blood flow},
+ Author = {Funamoto, K. and Hayase, T. and Saijo, Y. and Yambe, T.},
+ Journal = {Annals of biomedical engineering},
+ Volume = {36},
+ Number = {8},
+ Pages = {1383â1397},
+ Year = {2008},
+ Publisher = {EDP Sciences}
+}
+
+@Article{ funamoto_numerical_2008,
+ Title = {Numerical Experiment for Ultrasonic-Measurement-Integrated
+ Simulation of Three-Dimensional Unsteady Blood Flow},
+ Volume = {36},
+ Number = {8},
+ JournalTitle = {Annals of biomedical engineering},
+ Year = {2008},
+ Pages = {1383},
+ Author = {Funamoto, Kenichi and Hayase, Toshiyuki and Saijo,
+ Yoshifumi and Yambe, Tomoyuki}
+}
+
+@Book{ fung-93,
+ Annote = {hemodynamics, arterial wall, blood flow, muscle, heart,
+ blood vessels, bone, cartilage, erythrocyte, leucocyte},
+ Author = {Fung, Y. C.},
+ code = {hemo},
+ Publisher = {Springer},
+ Title = {Biomechanics, Mechanical properties of living tissues},
+ Year = {1993}
+}
+
+###Book{ fung-93,
+ Annote = {hemodynamics, arterial wall, blood flow, muscle, heart,
+ blood vessels, bone, cartilage, erythrocyte, leucocyte},
+ Author = {Fung, Y. C.},
+ code = {hemo},
+ Publisher = {Springer},
+ Title = {Biomechanics, Mechanical properties of living tissues},
+ Year = {1993}
+}
+
+@Article{ fung-kronek-patitucci-79,
+ Author = {Fung, Y.C. and Fronek, K. and Patitucci, P.},
+ Title = {Pseudoelasticity of arteries and the choice of its
+ mathematical expression},
+ Journal = {American Journal of Physiology},
+ Volume = {237},
+ Year = {1979},
+ Number = {5},
+ Pages = {H620-31},
+ pubmedid = {495769},
+ ISSN = {0002-9513}
+}
+
+###Article{ fung-kronek-patitucci-79,
+ Author = {Fung, Y.C. and Fronek, K. and Patitucci, P.},
+ Title = {Pseudoelasticity of arteries and the choice of its
+ mathematical expression},
+ Journal = {American Journal of Physiology},
+ Volume = {237},
+ Year = {1979},
+ Number = {5},
+ Pages = {H620-31},
+ URL = {http://www.biomedsearch.com/nih/Pseudoelasticity-arteries-choice-its-mathematical/495769.html},
+ pubmedid = {495769},
+ ISSN = {0002-9513}
+}
+
+@Article{ funke_variational_2016,
+ Title = {Variational Data Assimilation for Transient Blood Flow
+ Simulations},
+ URL = {https://arxiv.org/abs/1607.03013},
+ JournalTitle = {arXiv preprint arXiv:1607.03013},
+ URLDate = {2016-11-21},
+ Year = {2016},
+ Author = {Funke, S. W. and Nordaas, M. and Evju, Ãyvind and
+ Aln\textbackslash{}a es, M. S. and Mardal, K.-A.}
+}
+
+@Article{ funke_variational_2019,
+ Title = {Variational data assimilation for transient blood flow
+ simulations: Cerebral aneurysms as an illustrative
+ example},
+ Author = {Funke, Simon Wolfgang and Nordaas, Magne and Evju,
+ {\O}yvind and Aln{\ae}s, Martin Sandve and Mardal, Kent
+ Andre},
+ Journal = {International journal for numerical methods in biomedical
+ engineering},
+ Volume = {35},
+ Number = {1},
+ Pages = {e3152},
+ Year = {2019},
+ Publisher = {Wiley Online Library}
+}
+
+@Article{ furioli-lemarie-rieusset-terraneo-97,
+ Author = {Furioli, G. and Lemari{\'e}-Rieusset, P.G. and Terraneo,
+ E.},
+ Journal = {C. R. Acad. Sci.},
+ Pages = {1253-1256},
+ Title = {Sur l'unicit{\'e} dans {$L^3(R^3)$} des solutions mild des
+ {\'e}quations de {Navier-Stokes}},
+ Volume = {325},
+ Year = {1997}
+}
+
+###Article{ furioli-lemarie-rieusset-terraneo-97,
+ Author = {Furioli, G. and Lemari{\'e}-Rieusset, P.G. and Terraneo,
+ E.},
+ Journal = {C. R. Acad. Sci.},
+ Pages = {1253-1256},
+ Title = {Sur l'unicit{\'e} dans {$L^3(R^3)$} des solutions mild des
+ {\'e}quations de {Navier-Stokes}},
+ Volume = {325},
+ Year = {1997}
+}
+
+@Article{ gaca-etal-08,
+ Author = "Gaca, A.M. and Jaggers, J.J. and Dudley, L.T. and Bisset,
+ G.S.",
+ Title = "{Repair of Congenital Heart Disease: A Primer--Part 2}",
+ Journal = "Radiology",
+ Volume = 248,
+ Pages = "44-60",
+ Number = "1",
+ Year = "2008"
+}
+
+###Article{ gaca-etal-08,
+ Author = "Gaca, A.M. and Jaggers, J.J. and Dudley, L.T. and Bisset,
+ G.S.",
+ Title = "{Repair of Congenital Heart Disease: A Primer--Part 2}",
+ Journal = "Radiology",
+ Volume = 248,
+ Pages = "44-60",
+ Number = "1",
+ Year = "2008"
+}
+
+@Article{ galdi-heywood-shibata-97,
+ Author = {Galdi, G.P. and Heywood, J.G. and Shibata, Y.},
+ Journal = {Arch. Rat. Mech. Anal. },
+ Pages = {307-318},
+ Title = {On the global existence and convergence to steady state of
+ {Navier-Stokes} flow past an obstacle that is started from
+ rest},
+ Volume = {138},
+ Year = {1997}
+}
+
+###Article{ galdi-heywood-shibata-97,
+ Author = {Galdi, G.P. and Heywood, J.G. and Shibata, Y.},
+ Journal = {Arch. Rat. Mech. Anal. },
+ Pages = {307-318},
+ Title = {On the global existence and convergence to steady state of
+ {Navier-Stokes} flow past an obstacle that is started from
+ rest},
+ Volume = {138},
+ Year = {1997}
+}
+
+@Article{ galdi-padula-solonnikov-96,
+ Author = {Galdi, G.P. and Padula, M. and Solonnikov, V.A.},
+ Journal = {Indiana Univ. Math. J.},
+ Number = {4},
+ Pages = {961-994},
+ Title = {Existence, uniqueness and asymptotic behaviour of
+ solutions of steady-state {Navier-Stokes} equations in a
+ plane Aperture Domain},
+ Volume = {45},
+ Year = {1996}
+}
+
+###Article{ galdi-padula-solonnikov-96,
+ Author = {Galdi, G.P. and Padula, M. and Solonnikov, V.A.},
+ Journal = {Indiana Univ. Math. J.},
+ Number = {4},
+ Pages = {961-994},
+ Title = {Existence, uniqueness and asymptotic behaviour of
+ solutions of steady-state {Navier-Stokes} equations in a
+ plane Aperture Domain},
+ Volume = {45},
+ Year = {1996}
+}
+
+@Article{ gallo_use_2012,
+ Title = {On the Use of in Vivo Measured Flow Rates as Boundary
+ Conditions for Image-Based Hemodynamic Models of the Human
+ Aorta: Implications for Indicators of Abnormal Flow},
+ Volume = {40},
+ ShortTitle = {On the Use of in Vivo Measured Flow Rates as Boundary
+ Conditions for Image-Based Hemodynamic Models of the Human
+ Aorta},
+ Number = {3},
+ JournalTitle = {Annals of biomedical engineering},
+ Year = {2012},
+ Pages = {729--741},
+ Author = {Gallo, Diego and De Santis, Gianluca and Negri, Federica
+ and Tresoldi, D. and Ponzini, Raffaele and Massai, Diana
+ and Deriu, M. A. and Segers, Patrick and Verhegghe,
+ Benedict and Rizzo, G.}
+}
+
+@Article{ gambaruto_reconstruction_2008,
+ Title = {Reconstruction of Shape and Its Effect on Flow in Arterial
+ Conduits},
+ Volume = {57},
+ Number = {5},
+ JournalTitle = {International Journal for Numerical Methods in Fluids},
+ Year = {2008},
+ Pages = {495--517},
+ Author = {Gambaruto, A. M. and Peir{\'o}, J. and Doorly, Denis J.
+ and Radaelli, A. G.}
+}
+
+@Article{ gambaruto_sensitivity_2011,
+ langid = {english},
+ Title = {Sensitivity of Hemodynamics in a Patient Specific Cerebral
+ Aneurysm to Vascular Geometry and Blood Rheology.},
+ Volume = {8},
+ ISSN = {1547-1063},
+ URL = {http://europepmc.org/abstract/med/21631137},
+ DOI = {10.3934/mbe.2011.8.409},
+ Abstract = {Abstract: Newtonian and generalized Newtonian mathematical
+ models for blood flow are compared in two different
+ reconstructions of an anatomically realistic...},
+ Number = {2},
+ JournalTitle = {Mathematical biosciences and engineering : MBE},
+ ShortJournal = {Math Biosci Eng},
+ URLDate = {2019-02-28},
+ Year = {2011-04},
+ Pages = {409-423},
+ Author = {Gambaruto, A. M. and Janela, J. and Moura, A. and
+ Sequeira, A.},
+ EPrintType = {pmid},
+ EPrint = {21631137}
+}
+
+@Article{ gamerman1997markov,
+ Title = {Markov Chain Monte Carlo: Statistical Simulation for
+ Bayesian Inference},
+ Author = {Gamerman, D},
+ Journal = {Chapman and},
+ Volume = {1669},
+ Year = {1997}
+}
+
+@Article{ gamper-boesiger-kozerke-07,
+ Author = {Gamper, U. and Boesiger, P. and Kozerke, S.},
+ Title = {Diffusion imaging of the in vivo heart using spin echoes
+ -- considerations on bulk motion sensitivity},
+ Journal = {Magnetic Resonance in Medicine},
+ Volume = {57},
+ Number = {2},
+ Publisher = {Wiley Subscription Services, Inc., A Wiley Company},
+ ISSN = {1522-2594},
+ Pages = {331--337},
+ Keywords = {diffusion imaging, heart, spin echo, myocardial structure,
+ motion sensitivity},
+ Year = {2007}
+}
+
+@Article{ garcia-1998,
+ Author = {Bonow, R.O. and Carabello, B.A. and de~Leon, A.C. and
+ Edmunds, L.H. and Fredderly, B.J. and Freed, M.D. and
+ Gaasch, W.H. and McKay, C.R.and Nishimura, R.A. and O'Gara,
+ P.T. and O'Rourke, R.A. and Rahimtoola, S.H.},
+ Journal = {Circulation},
+ Pages = {1949--1984},
+ Title = {Guidelines for the management of patients with valvular
+ heart disease: executive summary, a report of the American
+ College of Cardiology},
+ Volume = {98},
+ Year = {1998}
+}
+
+###Article{ garcia-1998,
+ Author = {Bonow, R.O. and Carabello, B.A. and de~Leon, A.C. and
+ Edmunds, L.H. and Fredderly, B.J. and Freed, M.D. and
+ Gaasch, W.H. and McKay, C.R.and Nishimura, R.A. and O'Gara,
+ P.T. and O'Rourke, R.A. and Rahimtoola, S.H.},
+ Journal = {Circulation},
+ Pages = {1949--1984},
+ Title = {Guidelines for the management of patients with valvular
+ heart disease: executive summary, a report of the American
+ College of Cardiology},
+ Volume = {98},
+ Year = {1998}
+}
+
+@Article{ garcia-2003,
+ Author = {Garcia, D. and Dumesnil, J. and Durand, L.-G. and Kadem,
+ L. and Pibarot, P.},
+ Journal = {Jour. American College of Cardiology},
+ Number = {3},
+ Pages = {435--445},
+ Title = {Discrepancies between catheter and Doppler estimates of
+ valve effective orifice area can be predicted from the
+ pressure recovery phenomenon},
+ Volume = {41},
+ Year = {2003}
+}
+
+###Article{ garcia-2003,
+ Author = {Garcia, D. and Dumesnil, J. and Durand, L.-G. and Kadem,
+ L. and Pibarot, P.},
+ Journal = {Jour. American College of Cardiology},
+ Number = {3},
+ Pages = {435--445},
+ Title = {Discrepancies between catheter and Doppler estimates of
+ valve effective orifice area can be predicted from the
+ pressure recovery phenomenon},
+ Volume = {41},
+ Year = {2003}
+}
+
+@Article{ garcia_discrepancies_2003,
+ Title = {Discrepancies between Catheter and {{Doppler}} Estimates
+ of Valve Effective Orifice Area Can Be Predicted from the
+ Pressure Recovery Phenomenon: Practical Implications with
+ Regard to Quantification of Aortic Stenosis Severity},
+ Volume = {41},
+ ShortTitle = {Discrepancies between Catheter and {{Doppler}} Estimates
+ of Valve Effective Orifice Area Can Be Predicted from the
+ Pressure Recovery Phenomenon},
+ Number = {3},
+ JournalTitle = {Journal of the American College of Cardiology},
+ Year = {2003},
+ Pages = {435--442},
+ Author = {Garcia, Damien and Dumesnil, Jean G. and Durand,
+ Louis-Gilles and Kadem, Lyes and Pibarot, Philippe}
+}
+
+@Article{ garrido1994,
+ Title = {Anisotropy of water diffusion in the myocardium of the
+ rat.},
+ Author = {Garrido, L. and Wedeen, V. J. and Kwong, K. K. and
+ Spencer, U. M. and Kantor, H. L.},
+ Journal = {Circulation research},
+ Volume = {74},
+ Number = {5},
+ Pages = {789--793},
+ Year = {1994},
+ Publisher = {Am Heart Assoc}
+}
+
+@Article{ gaudron1993circ,
+ Title = {Progressive left ventricular dysfunction and remodeling
+ after myocardial infarction. Potential mechanisms and early
+ predictors.},
+ Author = {Gaudron, P and Eilles, C and Kugler, I and Ertl, G},
+ Journal = {Circulation},
+ Year = {1993},
+ Number = {3},
+ Pages = {755-63},
+ Volume = {87},
+ Abstract = {BACKGROUND Left ventricular enlargement and the
+ development of chronic heart failure are potent predictors
+ of survival in patients after myocardial infarction.
+ Prospective studies relating progressive ventricular
+ enlargement in individual patients to global and regional
+ cardiac dysfunction and the onset of late chronic heart
+ failure are not available. It was the aim of this study to
+ define the relation between left ventricular dilatation and
+ global and regional cardiac dysfunction and to identify
+ early predictors of enlargement and chronic heart failure
+ in patients after myocardial infarction.METHODS AND RESULTS
+ Left ventricular volumes, regional area shrinkage fraction
+ in 18 predefined sectors (gated single photon emission
+ computed tomography), global ejection fraction, and
+ hemodynamics at rest and during exercise (supine bicycle,
+ 50 W, 4 minutes, Swan-Ganz catheter) were assessed
+ prospectively 4 days, 4 weeks, 6 months, and 1.5 and 3
+ years after first myocardial infarction. Seventy patients
+ were assigned to groups with progressive, limited, or no
+ dilatation. Patients without dilatation (n = 38) maintained
+ normal volumes and hemodynamics until 3 years. With limited
+ dilatation (n = 18), left ventricular volume increased up
+ to 4 weeks after infarction and stabilized thereafter;
+ depressed stroke volume was restored 4 weeks after
+ infarction and then remained stable at rest. Wedge pressure
+ during exercise, however, progressively increased. With
+ progressive dilatation (n = 14), depressed cardiac and
+ stroke indexes were also restored by 4 weeks but
+ progressively deteriorated thereafter. Area shrinkage
+ fraction as an estimate of regional left ventricular
+ function in normokinetic sectors at 4 days gradually
+ deteriorated during 3 years, but hypokinetic and dyskinetic
+ sectors remained unchanged. Global ejection fraction fell
+ after 1.5 years, whereas right atrial pressure, wedge
+ pressure, and systemic vascular resistance increased. By
+ multivariate analysis, ejection fraction and stroke index
+ at 4 days, ventriculographic infarct size, infarct
+ location, and Thrombolysis in Myocardial Infarction trial
+ grade of infarct artery perfusion were significant
+ predictors of progressive ventricular enlargement and
+ chronic dysfunction.CONCLUSIONS Almost 26% of patients may
+ develop limited left ventricular dilatation within 4 weeks
+ after first infarction, which helps to restore cardiac
+ index and stroke index at rest and to preserve exercise
+ performance and therefore remains compensatory. A somewhat
+ smaller group (20%) develops progressive structural left
+ ventricular dilatation, which is compensatory at first,
+ then progresses to noncompensatory dilatation, and finally
+ results in severe global left ventricular dysfunction. In
+ these patients, depression of global ejection fraction
+ probably results from impairment of function of initially
+ normally contracting myocardium. Early predictors from
+ multivariate analysis allow identification of patients at
+ high risk for progressive left ventricular dilatation and
+ chronic ventricular dysfunction within 4 weeks after acute
+ infarction.},
+ DOI = {10.1161/01.CIR.87.3.755},
+ EPrint = {http://circ.ahajournals.org/content/87/3/755.full.pdf+html},
+ File = {gaudron93.pdf:gaudron93.pdf:PDF},
+ timestamp = {2015/09/13},
+ URL = {http://circ.ahajournals.org/content/87/3/755.abstract}
+}
+
+@Report{ gbd_2015_mortality_and_causes_of_death_collaborators_global_2016,
+ langid = {english},
+ Title = {Global, Regional, and National Life Expectancy, All-Cause
+ Mortality, and Cause-Specific Mortality for 249 Causes of
+ Death, 1980-2015: A Systematic Analysis for the {{Global
+ Burden}} of {{Disease Study}} 2015},
+ ShortTitle = {Global, Regional, and National Life Expectancy, All-Cause
+ Mortality, and Cause-Specific Mortality for 249 Causes of
+ Death, 1980-2015},
+ Abstract = {BACKGROUND: Improving survival and extending the longevity
+ of life for all populations requires timely, robust
+ evidence on local mortality levels and trends. The Global
+ Burden of Disease 2015 Study (GBD 2015) provides a
+ comprehensive assessment of all-cause and cause-specific
+ mortality for 249 causes in 195 countries and territories
+ from 1980 to 2015. These results informed an in-depth
+ investigation of observed and expected mortality patterns
+ based on sociodemographic measures. METHODS: We estimated
+ all-cause mortality by age, sex, geography, and year using
+ an improved analytical approach originally developed for
+ GBD 2013 and GBD 2010. Improvements included refinements to
+ the estimation of child and adult mortality and
+ corresponding uncertainty, parameter selection for under-5
+ mortality synthesis by spatiotemporal Gaussian process
+ regression, and sibling history data processing. We also
+ expanded the database of vital registration, survey, and
+ census data to 14\hphantom{,}294 geography-year datapoints.
+ For GBD 2015, eight causes, including Ebola virus disease,
+ were added to the previous GBD cause list for mortality. We
+ used six modelling approaches to assess cause-specific
+ mortality, with the Cause of Death Ensemble Model (CODEm)
+ generating estimates for most causes. We used a series of
+ novel analyses to systematically quantify the drivers of
+ trends in mortality across geographies. First, we assessed
+ observed and expected levels and trends of cause-specific
+ mortality as they relate to the Socio-demographic Index
+ (SDI), a summary indicator derived from measures of income
+ per capita, educational attainment, and fertility. Second,
+ we examined factors affecting total mortality patterns
+ through a series of counterfactual scenarios, testing the
+ magnitude by which population growth, population age
+ structures, and epidemiological changes contributed to
+ shifts in mortality. Finally, we attributed changes in life
+ expectancy to changes in cause of death. We documented each
+ step of the GBD 2015 estimation processes, as well as data
+ sources, in accordance with Guidelines for Accurate and
+ Transparent Health Estimates Reporting (GATHER). FINDINGS:
+ Globally, life expectancy from birth increased from 61·7
+ years (95\% uncertainty interval 61·4-61·9) in 1980 to
+ 71·8 years (71·5-72·2) in 2015. Several countries in
+ sub-Saharan Africa had very large gains in life expectancy
+ from 2005 to 2015, rebounding from an era of exceedingly
+ high loss of life due to HIV/AIDS. At the same time, many
+ geographies saw life expectancy stagnate or decline,
+ particularly for men and in countries with rising mortality
+ from war or interpersonal violence. From 2005 to 2015, male
+ life expectancy in Syria dropped by 11·3 years
+ (3·7-17·4), to 62·6 years (56·5-70·2). Total deaths
+ increased by 4·1\% (2·6-5·6) from 2005 to 2015, rising
+ to 55·8 million (54·9 million to 56·6 million) in 2015,
+ but age-standardised death rates fell by 17·0\%
+ (15·8-18·1) during this time, underscoring changes in
+ population growth and shifts in global age structures. The
+ result was similar for non-communicable diseases (NCDs),
+ with total deaths from these causes increasing by 14·1\%
+ (12·6-16·0) to 39·8 million (39·2 million to 40·5
+ million) in 2015, whereas age-standardised rates decreased
+ by 13·1\% (11·9-14·3). Globally, this mortality pattern
+ emerged for several NCDs, including several types of
+ cancer, ischaemic heart disease, cirrhosis, and Alzheimer's
+ disease and other dementias. By contrast, both total deaths
+ and age-standardised death rates due to communicable,
+ maternal, neonatal, and nutritional conditions
+ significantly declined from 2005 to 2015, gains largely
+ attributable to decreases in mortality rates due to
+ HIV/AIDS (42·1\%, 39·1-44·6), malaria (43·1\%,
+ 34·7-51·8), neonatal preterm birth complications
+ (29·8\%, 24·8-34·9), and maternal disorders (29·1\%,
+ 19·3-37·1). Progress was slower for several causes, such
+ as lower respiratory infections and nutritional
+ deficiencies, whereas deaths increased for others,
+ including dengue and drug use disorders. Age-standardised
+ death rates due to injuries significantly declined from
+ 2005 to 2015, yet interpersonal violence and war claimed
+ increasingly more lives in some regions, particularly in
+ the Middle East. In 2015, rotaviral enteritis (rotavirus)
+ was the leading cause of under-5 deaths due to diarrhoea
+ (146\hphantom{,}000 deaths,
+ 118\hphantom{,}000-183\hphantom{,}000) and pneumococcal
+ pneumonia was the leading cause of under-5 deaths due to
+ lower respiratory infections (393\hphantom{,}000 deaths,
+ 228\hphantom{,}000-532\hphantom{,}000), although
+ pathogen-specific mortality varied by region. Globally, the
+ effects of population growth, ageing, and changes in
+ age-standardised death rates substantially differed by
+ cause. Our analyses on the expected associations between
+ cause-specific mortality and SDI show the regular shifts in
+ cause of death composition and population age structure
+ with rising SDI. Country patterns of premature mortality
+ (measured as years of life lost [YLLs]) and how they differ
+ from the level expected on the basis of SDI alone revealed
+ distinct but highly heterogeneous patterns by region and
+ country or territory. Ischaemic heart disease, stroke, and
+ diabetes were among the leading causes of YLLs in most
+ regions, but in many cases, intraregional results sharply
+ diverged for ratios of observed and expected YLLs based on
+ SDI. Communicable, maternal, neonatal, and nutritional
+ diseases caused the most YLLs throughout sub-Saharan
+ Africa, with observed YLLs far exceeding expected YLLs for
+ countries in which malaria or HIV/AIDS remained the leading
+ causes of early death. INTERPRETATION: At the global scale,
+ age-specific mortality has steadily improved over the past
+ 35 years; this pattern of general progress continued in the
+ past decade. Progress has been faster in most countries
+ than expected on the basis of development measured by the
+ SDI. Against this background of progress, some countries
+ have seen falls in life expectancy, and age-standardised
+ death rates for some causes are increasing. Despite
+ progress in reducing age-standardised death rates,
+ population growth and ageing mean that the number of deaths
+ from most non-communicable causes are increasing in most
+ countries, putting increased demands on health systems.
+ FUNDING: Bill \& Melinda Gates Foundation.},
+ Year = {2016-10-08},
+ Pages = {1459-1544},
+ Author = {{GBD 2015 Mortality and Causes of Death Collaborators}},
+ EPrintType = {pmid},
+ EPrint = {27733281},
+ pmcid = {PMC5388903}
+}
+
+@Article{ gee-foerster-wall-10,
+ Author = {Gee, M. W. and F\"orster, Ch. and Wall, W. A.},
+ Title = {A computational strategy for prestressing patient-specific
+ biomechanical problems under finite deformation},
+ Journal = {International Journal for Numerical Methods in Biomedical
+ Engineering},
+ Volume = {26},
+ Number = {1},
+ Publisher = {John Wiley & Sons, Ltd.},
+ ISSN = {2040-7947},
+ DOI = {10.1002/cnm.1236},
+ Pages = {52--72},
+ Keywords = {inverse design analysis, prestressing, prestraining,
+ patient-specific modeling, biomechanics, abdominal aortic
+ aneurysm},
+ Year = {2010}
+}
+
+###Article{ gee-foerster-wall-10,
+ Author = {Gee, M. W. and F\"orster, Ch. and Wall, W. A.},
+ Title = {A computational strategy for prestressing patient-specific
+ biomechanical problems under finite deformation},
+ Journal = {International Journal for Numerical Methods in Biomedical
+ Engineering},
+ Volume = {26},
+ Number = {1},
+ Publisher = {John Wiley & Sons, Ltd.},
+ ISSN = {2040-7947},
+ URL = {http://dx.doi.org/10.1002/cnm.1236},
+ DOI = {10.1002/cnm.1236},
+ Pages = {52--72},
+ Keywords = {inverse design analysis, prestressing, prestraining,
+ patient-specific modeling, biomechanics, abdominal aortic
+ aneurysm},
+ Year = {2010}
+}
+
+@Article{ gee2010ijnmbe,
+ Title = {A computational strategy for prestressing patient-specific
+ biomechanical problems under finite deformation},
+ Author = {Gee, MW and F{\"o}rster, Ch and Wall, WA},
+ Journal = {International Journal for Numerical Methods in Biomedical
+ Engineering},
+ Volume = {26},
+ Number = {1},
+ Pages = {52--72},
+ Year = {2010},
+ Publisher = {Wiley Online Library}
+}
+
+@Article{ geerts2002ajp,
+ Title = {Characterization of the normal cardiac myofiber field in
+ goat measured with MR-diffusion tensor imaging},
+ Author = {Geerts, L. and Bovendeerd, P. and Nicolay, K. and Arts,
+ T.},
+ Journal = {American Journal of Physiology - Heart and Circulatory
+ Physiology},
+ Year = {2002},
+ Number = {1},
+ Pages = {H139--H145},
+ Volume = {283},
+ Abstract = {Cardiac myofiber orientation is a crucial determinant of
+ the distribution of myocardial wall stress. Myofiber
+ orientation is commonly quantified by helix and transverse
+ angles. Accuracy of reported helix angles is limited.
+ Reported transverse angle data are incomplete. We measured
+ cardiac myofiber orientation postmortem in five healthy
+ goat hearts using magnetic resonance-diffusion tensor
+ imaging. A novel local wall-bound coordinate system was
+ derived from the characteristics of the fiber field. The
+ transmural course of the helix angle corresponded to data
+ reported in literature. The mean midwall transverse angle
+ ranged from -12 {\textpm} 4{\textdegree} near the apex to
+ +9.0 {\textpm} 4{\textdegree} near the base of the left
+ ventricle, which is in agreement with the course predicted
+ by Rijcken et al. (18) using a uniform load hypothesis. The
+ divergence of the myofiber field was computed, which is a
+ measure for the extent to which wall stress is transmitted
+ through the myofiber alone. It appeared to be \<0.07
+ mm-1 throughout the myocardial walls except for the fusion
+ sites between the left and right ventricles and the
+ insertion sites of the papillary muscles.},
+ DOI = {10.1152/ajpheart.00968.2001},
+ File = {geerts02.pdf:geerts02.pdf:PDF},
+ Publisher = {American Physiological Society},
+ timestamp = {2015/09/22}
+}
+
+@Article{ geerts2002characterization,
+ Author = {Geerts, Liesbeth and Bovendeerd, Peter and Nicolay, Klaas
+ and Arts, Theo},
+ Title = {Characterization of the normal cardiac myofiber field in
+ goat measured with MR-diffusion tensor imaging},
+ Journal = {American Journal of Physiology-Heart and Circulatory
+ Physiology},
+ Year = {2002},
+ Volume = {52},
+ Pages = {H139},
+ Number = {1},
+ Publisher = {[Bethesda, Md.] American Physiological Society.}
+}
+
+@Article{ genet2015abe,
+ Title = {Modeling Pathologies of Diastolic and Systolic Heart
+ Failure},
+ Author = {Genet, M. and Lee, L.C. and Baillargeon, B. and Guccione,
+ J.M. and Kuhl, E.},
+ Journal = {Annals of Biomedical Engineering},
+ Year = {2015},
+ Pages = {1-16},
+ DOI = {10.1007/s10439-015-1351-2},
+ File = {genet15.pdf:genet15.pdf:PDF},
+ ISSN = {0090-6964},
+ Keywords = {Cardiac modeling; Hypertrophy; Growth; Hypertension;
+ Finite element method},
+ Language = {English},
+ Publisher = {Springer US},
+ timestamp = {2015/09/21},
+ URL = {http://dx.doi.org/10.1007/s10439-015-1351-2}
+}
+
+@InCollection{ george-04,
+ Address = {John Wiley \& Sons},
+ Author = {George, P.L. and Borouchaki, H. and Frey, P.J. and Laug,
+ P. and Saltel,E.},
+ BookTitle = {Encyclopedia of computational mechanics},
+ Editor = {Stein, E. and de Borst, R. and Hughes, T.J.R.},
+ Publisher = {Higher Education Press},
+ Title = {Mesh generation and mesh adaptivity~: theory, techniques},
+ Year = {2004}
+}
+
+###InCollection{ george-04,
+ Address = {John Wiley \& Sons},
+ Author = {George, P.L. and Borouchaki, H. and Frey, P.J. and Laug,
+ P. and Saltel,E.},
+ BookTitle = {Encyclopedia of computational mechanics},
+ Editor = {Stein, E. and de Borst, R. and Hughes, T.J.R.},
+ Publisher = {Higher Education Press},
+ Title = {Mesh generation and mesh adaptivity~: theory, techniques},
+ Year = {2004}
+}
+
+@Article{ georgescu-79,
+ Author = {Georgescu, V.},
+ Journal = {Annali di Matematica Pura ed. Applicata},
+ Month = {April},
+ Number = {122},
+ Pages = {159-198},
+ Title = {Some boundary value problems for differential forms on
+ compact {Riemannian} manifolds},
+ Volume = {4},
+ Year = {1979}
+}
+
+###Article{ georgescu-79,
+ Author = {Georgescu, V.},
+ Journal = {Annali di Matematica Pura ed. Applicata},
+ Month = {April},
+ Number = {122},
+ Pages = {159-198},
+ Title = {Some boundary value problems for differential forms on
+ compact {Riemannian} manifolds},
+ Volume = {4},
+ Year = {1979}
+}
+
+@Article{ gerbeau-00,
+ Author = {Gerbeau, J-F.},
+ Journal = {Numerische Mathematik},
+ Number = {1},
+ Pages = {83-111},
+ Title = {A stabilized finite element method for the incompressible
+ magnetohydrodynamic equations},
+ Volume = {87},
+ Year = {2000}
+}
+
+###Article{ gerbeau-00,
+ Author = {Gerbeau, J-F.},
+ Journal = {Numerische Mathematik},
+ Number = {1},
+ Pages = {83-111},
+ Title = {A stabilized finite element method for the incompressible
+ magnetohydrodynamic equations},
+ Volume = {87},
+ Year = {2000}
+}
+
+@InProceedings{ gerbeau-01,
+ Author = {Gerbeau, J-F.},
+ BookTitle = {Proceedings of the First M.I.T. Conference on
+ Computational Fluid and Solid Mechanics},
+ Pages = {1184-1187},
+ Publisher = {Elsevier},
+ Title = {Numerical simulations in magnetohydrodynamics with free
+ surfaces},
+ Volume = 2,
+ Year = 2001
+}
+
+###InProceedings{ gerbeau-01,
+ Author = {Gerbeau, J-F.},
+ BookTitle = {Proceedings of the First M.I.T. Conference on
+ Computational Fluid and Solid Mechanics},
+ Pages = {1184-1187},
+ Publisher = {Elsevier},
+ Title = {Numerical simulations in magnetohydrodynamics with free
+ surfaces},
+ Volume = 2,
+ Year = 2001
+}
+
+@InProceedings{ gerbeau-03,
+ Author = {Gerbeau, J-F.},
+ BookTitle = {Proceedings of the second M.I.T. Conference on
+ Computational Fluid and Solid Mechanics},
+ Editor = {K.J. Bathe},
+ Pages = {1355-1357},
+ Publisher = {Elsevier},
+ Title = {A quasi-{Newton} method for a fluid-structure problem
+ arising in blood flows},
+ Year = {2003}
+}
+
+###InProceedings{ gerbeau-03,
+ Author = {Gerbeau, J-F.},
+ BookTitle = {Proceedings of the second M.I.T. Conference on
+ Computational Fluid and Solid Mechanics},
+ Editor = {K.J. Bathe},
+ Pages = {1355-1357},
+ Publisher = {Elsevier},
+ Title = {A quasi-{Newton} method for a fluid-structure problem
+ arising in blood flows},
+ Year = {2003}
+}
+
+@PhdThesis{ gerbeau-98,
+ Author = {Gerbeau, J-F.},
+ School = {Ecole Nationale des Ponts et Chauss{\'e}es},
+ Title = {Probl{\`e}mes math{\'e}\-matiques et num{\'e}\-riques
+ pos{\'e}s par la mod{\'e}li\-sation de l'{\'e}lec\-trolyse
+ de l'aluminium},
+ Type = {Th{\`e}se},
+ Year = {1998}
+}
+
+###PhdThesis{ gerbeau-98,
+ Author = {Gerbeau, J-F.},
+ School = {Ecole Nationale des Ponts et Chauss{\'e}es},
+ Title = {Probl{\`e}mes math{\'e}\-matiques et num{\'e}\-riques
+ pos{\'e}s par la mod{\'e}li\-sation de l'{\'e}lec\-trolyse
+ de l'aluminium},
+ Type = {Th{\`e}se},
+ Year = {1998}
+}
+
+@InProceedings{ gerbeau-98b,
+ Author = {Gerbeau, J-F.},
+ BookTitle = {Proceedings of the Fourth European Computational Fluid
+ Dynamics, ECCOMAS 98},
+ Pages = {821--825},
+ Publisher = {Wiley},
+ Title = {Comparison of numerical methods for solving a
+ magnetostatic problem. Application to the
+ magnetohydrodynamic equations},
+ Year = {1998}
+}
+
+###InProceedings{ gerbeau-98b,
+ Author = {Gerbeau, J-F.},
+ BookTitle = {Proceedings of the Fourth European Computational Fluid
+ Dynamics, ECCOMAS 98},
+ Pages = {821--825},
+ Publisher = {Wiley},
+ Title = {Comparison of numerical methods for solving a
+ magnetostatic problem. Application to the
+ magnetohydrodynamic equations},
+ Year = {1998}
+}
+
+@Unpublished{ gerbeau-glinsky-larrouturou-97,
+ Author = {Gerbeau, J-F. and Glinsky-Olivier, N. and Larrouturou,
+ B.},
+ Note = {Rapport de recherche INRIA No.3132, 1997 },
+ Title = {Semi-implicit Roe-type fluxes for low-Mach number flows}
+}
+
+###Unpublished{ gerbeau-glinsky-larrouturou-97,
+ Author = {Gerbeau, J-F. and Glinsky-Olivier, N. and Larrouturou,
+ B.},
+ Note = {Rapport de recherche INRIA No.3132, 1997 },
+ Title = {Semi-implicit Roe-type fluxes for low-Mach number flows}
+}
+
+@Article{ gerbeau-le-bris-00,
+ Author = {Gerbeau, J-F. and Le Bris, C.},
+ Journal = {Calcolo},
+ Number = {1},
+ Pages = {1-20},
+ Title = {Comparison between two numerical methods for a
+ magnetostatic problem},
+ Volume = {37},
+ Year = {2000}
+}
+
+###Article{ gerbeau-le-bris-00,
+ Author = {Gerbeau, J-F. and Le Bris, C.},
+ Journal = {Calcolo},
+ Number = {1},
+ Pages = {1-20},
+ Title = {Comparison between two numerical methods for a
+ magnetostatic problem},
+ Volume = {37},
+ Year = {2000}
+}
+
+@Article{ gerbeau-le-bris-00b,
+ Author = {Gerbeau, J-F. and Le Bris, C.},
+ Journal = {Appl. Math. Lett.},
+ Number = {3},
+ Pages = {107-112},
+ Title = {A basic remark on some {Navier-Stokes} equations with body
+ forces},
+ Volume = {13},
+ Year = {2000}
+}
+
+###Article{ gerbeau-le-bris-00b,
+ Author = {Gerbeau, J-F. and Le Bris, C.},
+ Journal = {Appl. Math. Lett.},
+ Number = {3},
+ Pages = {107-112},
+ Title = {A basic remark on some {Navier-Stokes} equations with body
+ forces},
+ Volume = {13},
+ Year = {2000}
+}
+
+@InBook{ gerbeau-le-bris-00c,
+ Author = {Gerbeau, J-F. and Le Bris, C.},
+ BookTitle = {Evolution Equations and Their Applications in Physical and
+ Life Sciences},
+ Pages = {355-367},
+ Publisher = {Marcel Dekker Inc.},
+ Series = {Lecture Notes in Pure and Applied Mathematics},
+ Title = {Mathematical study of a coupled system arising in
+ Magnetohydrodynamics},
+ Volume = {215},
+ Year = {2000}
+}
+
+###InBook{ gerbeau-le-bris-00c,
+ Author = {Gerbeau, J-F. and Le Bris, C.},
+ BookTitle = {Evolution Equations and Their Applications in Physical and
+ Life Sciences},
+ Pages = {355-367},
+ Publisher = {Marcel Dekker Inc.},
+ Series = {Lecture Notes in Pure and Applied Mathematics},
+ Title = {Mathematical study of a coupled system arising in
+ Magnetohydrodynamics},
+ Volume = {215},
+ Year = {2000}
+}
+
+@Article{ gerbeau-le-bris-97,
+ Author = {Gerbeau, J-F. and Le Bris, C.},
+ Journal = {Advances in Differential Equations},
+ Month = {May},
+ Number = {3},
+ Pages = {427-452},
+ Title = {Existence of solution for a density-dependent
+ magnetohydrodynamic equation},
+ Volume = {2},
+ Year = {1997}
+}
+
+###Article{ gerbeau-le-bris-97,
+ Author = {Gerbeau, J-F. and Le Bris, C.},
+ Journal = {Advances in Differential Equations},
+ Month = {May},
+ Number = {3},
+ Pages = {427-452},
+ Title = {Existence of solution for a density-dependent
+ magnetohydrodynamic equation},
+ Volume = {2},
+ Year = {1997}
+}
+
+@Article{ gerbeau-le-bris-99,
+ Author = {Gerbeau, J-F. and Le Bris, C.},
+ Journal = {Appl. Math. Lett.},
+ Pages = {53-57},
+ Title = {On a coupled system arising in Magnetohydrodynamics},
+ Volume = {12},
+ Year = {1999}
+}
+
+###Article{ gerbeau-le-bris-99,
+ Author = {Gerbeau, J-F. and Le Bris, C.},
+ Journal = {Appl. Math. Lett.},
+ Pages = {53-57},
+ Title = {On a coupled system arising in Magnetohydrodynamics},
+ Volume = {12},
+ Year = {1999}
+}
+
+@Article{ gerbeau-le-bris-99b,
+ Author = {Gerbeau, J-F. and Le Bris, C.},
+ Journal = {Differential Integral Equations},
+ Number = {5},
+ Pages = {691-740},
+ Title = {On the long time behaviour of the solution to the
+ two-fluids incompressible Navier-Stokes equations},
+ Volume = {12},
+ Year = {1999}
+}
+
+###Article{ gerbeau-le-bris-99b,
+ Author = {Gerbeau, J-F. and Le Bris, C.},
+ Journal = {Differential Integral Equations},
+ Number = {5},
+ Pages = {691-740},
+ Title = {On the long time behaviour of the solution to the
+ two-fluids incompressible Navier-Stokes equations},
+ Volume = {12},
+ Year = {1999}
+}
+
+@Article{ gerbeau-le-bris-bercovier-97,
+ Author = {Gerbeau, J-F. and Le Bris, C. and Bercovier, M.},
+ Journal = {Int. Jour. Num. Meth. Fluids},
+ Month = {October},
+ Pages = {679-695},
+ Title = {Spurious velocities in the steady flow of an
+ incompressible fluid subjected to external forces},
+ Volume = {25},
+ Year = {1997}
+}
+
+###Article{ gerbeau-le-bris-bercovier-97,
+ Author = {Gerbeau, J-F. and Le Bris, C. and Bercovier, M.},
+ Journal = {Int. Jour. Num. Meth. Fluids},
+ Month = {October},
+ Pages = {679-695},
+ Title = {Spurious velocities in the steady flow of an
+ incompressible fluid subjected to external forces},
+ Volume = {25},
+ Year = {1997}
+}
+
+@Article{ gerbeau-le-bris-lelievre-04,
+ Author = {Gerbeau, J-F. and Leli{\`e}vre, T. and Le Bris, C.},
+ Journal = {Computers and Fluids},
+ Pages = {801-814},
+ Title = {Modeling and simulation of the industrial production of
+ aluminium: the nonlinear approach},
+ Volume = {33},
+ Year = {2004}
+}
+
+###Article{ gerbeau-le-bris-lelievre-04,
+ Author = {Gerbeau, J-F. and Leli{\`e}vre, T. and Le Bris, C.},
+ Journal = {Computers and Fluids},
+ Pages = {801-814},
+ Title = {Modeling and simulation of the industrial production of
+ aluminium: the nonlinear approach},
+ Volume = {33},
+ Year = {2004}
+}
+
+@Unpublished{ gerbeau-lelievre,
+ Author = {Gerbeau, J-F. and Leli{\`e}vre, T.},
+ Note = {(en pr{\'e}paration)},
+ Title = {Stabilized finite elements on moving domains}
+}
+
+###Unpublished{ gerbeau-lelievre,
+ Author = {Gerbeau, J-F. and Leli{\`e}vre, T.},
+ Note = {(en pr{\'e}paration)},
+ Title = {Stabilized finite elements on moving domains}
+}
+
+@Article{ gerbeau-lelievre-le-bris-02,
+ Author = {Gerbeau, J-F. and Leli{\`e}vre, T. and Le Bris, C. and
+ Ligonesche, N.},
+ Journal = {Light Metal},
+ Pages = {p. 483-487},
+ Title = {Metal pad roll instabilities},
+ Year = {2002}
+}
+
+###Article{ gerbeau-lelievre-le-bris-02,
+ Author = {Gerbeau, J-F. and Leli{\`e}vre, T. and Le Bris, C. and
+ Ligonesche, N.},
+ Journal = {Light Metal},
+ Pages = {p. 483-487},
+ Title = {Metal pad roll instabilities},
+ Year = {2002}
+}
+
+@Article{ gerbeau-lelievre-le-bris-02b,
+ Author = {Gerbeau, J-F. and Leli{\`e}vre, T. and Le Bris, C.},
+ Journal = {Fundamental and Applied MHD. Proceedings of the Fifth
+ international Pamir Conference.},
+ Pages = {101-105},
+ Title = {Numerical simulations of two-fluids MHD flows},
+ Volume = {1},
+ Year = {2002}
+}
+
+###Article{ gerbeau-lelievre-le-bris-02b,
+ Author = {Gerbeau, J-F. and Leli{\`e}vre, T. and Le Bris, C.},
+ Journal = {Fundamental and Applied MHD. Proceedings of the Fifth
+ international Pamir Conference.},
+ Pages = {101-105},
+ Title = {Numerical simulations of two-fluids MHD flows},
+ Volume = {1},
+ Year = {2002}
+}
+
+@Article{ gerbeau-lelievre-le-bris-03,
+ Author = {Gerbeau, J-F. and Leli{\`e}vre, T. and Le Bris, C.},
+ Journal = {Jour. Comp. Phys.},
+ Number = 1,
+ Pages = {163-191},
+ Title = {Simulations of {MHD} flows with moving interfaces},
+ Volume = 184,
+ Year = 2003
+}
+
+###Article{ gerbeau-lelievre-le-bris-03,
+ Author = {Gerbeau, J-F. and Leli{\`e}vre, T. and Le Bris, C.},
+ Journal = {Jour. Comp. Phys.},
+ Number = 1,
+ Pages = {163-191},
+ Title = {Simulations of {MHD} flows with moving interfaces},
+ Volume = 184,
+ Year = 2003
+}
+
+@Article{ gerbeau-perthame-01,
+ Author = {Gerbeau, J-F. and Perthame, B.},
+ Journal = {Discrete and Continuous Dynamical Systems: Series B},
+ Number = {1},
+ Pages = {89-102},
+ Title = {Derivation of viscous Saint-Venant system for laminar
+ shallow water; numerical validation},
+ Volume = {1},
+ Year = {2001}
+}
+
+###Article{ gerbeau-perthame-01,
+ Author = {Gerbeau, J-F. and Perthame, B.},
+ Journal = {Discrete and Continuous Dynamical Systems: Series B},
+ Number = {1},
+ Pages = {89-102},
+ Title = {Derivation of viscous Saint-Venant system for laminar
+ shallow water; numerical validation},
+ Volume = {1},
+ Year = {2001}
+}
+
+@Article{ gerbeau-vidrascu-03,
+ Author = {Gerbeau, J-F. and Vidrascu, M.},
+ Journal = {Math. Model. Num. Anal.},
+ Number = {4},
+ Pages = {631-648},
+ Title = {A quasi-{Newton} algorithm based on a reduced model for
+ fluid-structure interactions problems in blood flows},
+ Volume = {37},
+ Year = {2003}
+}
+
+###Article{ gerbeau-vidrascu-03,
+ Author = {Gerbeau, J-F. and Vidrascu, M.},
+ Journal = {Math. Model. Num. Anal.},
+ Number = {4},
+ Pages = {631-648},
+ Title = {A quasi-{Newton} algorithm based on a reduced model for
+ fluid-structure interactions problems in blood flows},
+ Volume = {37},
+ Year = {2003}
+}
+
+@Article{ gerbeau-vidrascu-frey-05,
+ Author = {Gerbeau, J-F. and Vidrascu, M. and Frey, P.},
+ Journal = {Comp. \& Struct.},
+ Number = {2-3},
+ Pages = {155-165},
+ Title = {Fluid-Structure Interaction in Blood Flows on Geometries
+ based on Medical Imaging},
+ Volume = {83},
+ Year = {2005}
+}
+
+###Article{ gerbeau-vidrascu-frey-05,
+ Author = {Gerbeau, J-F. and Vidrascu, M. and Frey, P.},
+ Journal = {Comp. \& Struct.},
+ Number = {2-3},
+ Pages = {155-165},
+ Title = {Fluid-Structure Interaction in Blood Flows on Geometries
+ based on Medical Imaging},
+ Volume = {83},
+ Year = {2005}
+}
+
+@Article{ gersh_2011_2011,
+ Title = {2011 {{ACCF}}/{{AHA}} Guideline for the Diagnosis and
+ Treatment of Hypertrophic Cardiomyopathy: A Report of the
+ {{American College}} of {{Cardiology
+ Foundation}}/{{American Heart Association Task Force}} on
+ Practice Guidelines Developed in Collaboration with the
+ {{American Association}} for {{Thoracic Surgery}},
+ {{American Society}} of Echocardiography, {{American
+ Society}} of Nuclear {{Cardiology}}, {{Heart Failure
+ Society}} of {{America}}, {{Heart Rhythm Society}},
+ {{Society}} for {{Cardiovascular Angiography}} and
+ {{Interventions}}, and {{Society}} of {{Thoracic
+ Surgeons}}},
+ Volume = {58},
+ ShortTitle = {2011 {{ACCF}}/{{AHA}} Guideline for the Diagnosis and
+ Treatment of Hypertrophic Cardiomyopathy},
+ Number = {25},
+ JournalTitle = {Journal of the American College of Cardiology},
+ Year = {2011},
+ Pages = {e212--e260},
+ Author = {Gersh, Bernard J. and Maron, Barry J. and Bonow, Robert O.
+ and Dearani, Joseph A. and Fifer, Michael A. and Link, Mark
+ S. and Naidu, Srihari S. and Nishimura, Rick A. and Ommen,
+ Steve R. and Rakowski, Harry}
+}
+
+@Article{ geuzaine-remacle-09,
+ Author = {Geuzaine, C. and Remacle, J.-F.},
+ Title = {Gmsh: A 3-D finite element mesh generator with built-in
+ pre- and post-processing facilities},
+ Journal = {International Journal for Numerical Methods in
+ Engineering},
+ Volume = {79},
+ Number = {11},
+ Publisher = {John Wiley & Sons, Ltd.},
+ ISSN = {1097-0207},
+ Pages = {1309--1331},
+ Keywords = {computer-aided design, mesh generation, post-processing,
+ finite element method, open-source software},
+ Year = {2009}
+}
+
+###Article{ geuzaine-remacle-09,
+ Author = {Geuzaine, Christophe and Remacle, Jean-Francois},
+ Title = {Gmsh: A 3-D finite element mesh generator with built-in
+ pre- and post-processing facilities},
+ Journal = {International Journal for Numerical Methods in
+ Engineering},
+ Volume = {79},
+ Number = {11},
+ Publisher = {John Wiley & Sons, Ltd.},
+ ISSN = {1097-0207},
+ URL = {http://dx.doi.org/10.1002/nme.2579},
+ DOI = {10.1002/nme.2579},
+ Pages = {1309--1331},
+ Keywords = {computer-aided design, mesh generation, post-processing,
+ finite element method, open-source software},
+ Year = {2009}
+}
+
+@PhdThesis{ ghidaglia-84,
+ Author = {Ghidaglia, J.-M.},
+ School = {Universit{\'e} de Paris-Sud, Orsay},
+ Title = {Etude d'{\'e}coulements de fluides visqueux
+ incompressibles~: comportement pour les grands temps et
+ applications aux attracteurs},
+ Type = {Th{\`e}se},
+ Year = {1984}
+}
+
+###PhdThesis{ ghidaglia-84,
+ Author = {Ghidaglia, J.-M.},
+ School = {Universit{\'e} de Paris-Sud, Orsay},
+ Title = {Etude d'{\'e}coulements de fluides visqueux
+ incompressibles~: comportement pour les grands temps et
+ applications aux attracteurs},
+ Type = {Th{\`e}se},
+ Year = {1984}
+}
+
+@Article{ gifsen-van-de-vosse-janssen-99,
+ Annote = {hemodynamics, non newtonian},
+ Author = {Gijsen, F.J.H. and van de Vosse, F.N and Janssen J.D.},
+ code = {hemo},
+ Journal = {J. Biomech.},
+ Pages = {601-608},
+ Title = {The influence of the non-{Newtonian} properties of blood
+ on the flow in large arteries: steady flow in a carotid
+ bifurcation model},
+ Volume = {32},
+ Year = {1999}
+}
+
+###Article{ gifsen-van-de-vosse-janssen-99,
+ Annote = {hemodynamics, non newtonian},
+ Author = {Gijsen, F.J.H. and van de Vosse, F.N and Janssen J.D.},
+ code = {hemo},
+ Journal = {J. Biomech.},
+ Pages = {601-608},
+ Title = {The influence of the non-{Newtonian} properties of blood
+ on the flow in large arteries: steady flow in a carotid
+ bifurcation model},
+ Volume = {32},
+ Year = {1999}
+}
+
+@Article{ gijsen-allanic-van-de-vosse-janssen-99,
+ Annote = {hemodynamics, non newtonian},
+ Author = {Gijsen, F.J.H. and Allanic, E. and van de Vosse, F.N and
+ Janssen J.D.},
+ code = {hemo},
+ Journal = {J. Biomech.},
+ Pages = {705-713},
+ Title = {The influence of the non-{Newtonian} properties of blood
+ on the flow in large arteries: unsteady flow in $90^o$
+ curved tube},
+ Volume = {32},
+ Year = {1999}
+}
+
+###Article{ gijsen-allanic-van-de-vosse-janssen-99,
+ Annote = {hemodynamics, non newtonian},
+ Author = {Gijsen, F.J.H. and Allanic, E. and van de Vosse, F.N and
+ Janssen J.D.},
+ code = {hemo},
+ Journal = {J. Biomech.},
+ Pages = {705-713},
+ Title = {The influence of the non-{Newtonian} properties of blood
+ on the flow in large arteries: unsteady flow in $90^o$
+ curved tube},
+ Volume = {32},
+ Year = {1999}
+}
+
+@Article{ gijsen_influence_1999,
+ langid = {english},
+ Title = {The Influence of the Non-{{Newtonian}} Properties of Blood
+ on the Flow in Large Arteries: Steady Flow in a Carotid
+ Bifurcation Model},
+ Volume = {32},
+ ISSN = {00219290},
+ URL = {http://linkinghub.elsevier.com/retrieve/pii/S0021929099000159},
+ DOI = {10.1016/S0021-9290(99)00015-9},
+ ShortTitle = {The Influence of the Non-{{Newtonian}} Properties of Blood
+ on the Flow in Large Arteries},
+ Number = {6},
+ JournalTitle = {Journal of Biomechanics},
+ URLDate = {2019-02-13},
+ Year = {1999-06},
+ Pages = {601-608},
+ Author = {Gijsen, F.J.H. and van de Vosse, F.N. and Janssen, J.D.},
+ Options = {useprefix=true}
+}
+
+@InCollection{ gil2013stacom,
+ Title = {What a difference in biomechanics cardiac fiber makes},
+ Author = {Gil, Debora and Borr{\`a}s, Agn{\'e}s and Aris, Ruth and
+ V{\'a}zquez, Mariano and Lafortune, Pierre and Houzeaux,
+ Guillaume and Aguado, Jazmin and Ballester, Manel and Li,
+ Chi Hion and Carreras, Francesc},
+ BookTitle = {Statistical Atlases and Computational Models of the Heart.
+ Imaging and Modelling Challenges},
+ Pages = {253--260},
+ Year = {2013},
+ Publisher = {Springer}
+}
+
+@Article{ gilbert2007regional,
+ Author = {Gilbert, Stephen H and Benson, Alan P and Li, Pan and
+ Holden, Arun V},
+ Title = {Regional localisation of left ventricular sheet structure:
+ integration with current models of cardiac fibre, sheet and
+ band structure},
+ Journal = {European journal of cardio-thoracic surgery},
+ Year = {2007},
+ Volume = {32},
+ Pages = {231--249},
+ Number = {2},
+ Publisher = {Oxford University Press}
+}
+
+@Book{ girault-raviart-86,
+ Author = {Girault, V. and Raviart, P.-A.},
+ Publisher = {Springer-Verlag},
+ Title = { Finite element methods for {Navier-Stokes} equations},
+ Year = {1986}
+}
+
+###Book{ girault-raviart-86,
+ Author = {Girault, V. and Raviart, P.-A.},
+ Publisher = {Springer-Verlag},
+ Title = { Finite element methods for {Navier-Stokes} equations},
+ Year = {1986}
+}
+
+@Book{ girault2012finite,
+ Title = {Finite element methods for {N}avier-{S}tokes equations:
+ theory and algorithms},
+ Author = {Girault, Vivette and Raviart, Pierre-Arnaud},
+ Volume = {5},
+ Year = {2012},
+ Publisher = {Springer Science \& Business Media}
+}
+
+###Book{ girault2012finite,
+ Title = {Finite element methods for {N}avier-{S}tokes equations:
+ theory and algorithms},
+ Author = {Girault, Vivette and Raviart, Pierre-Arnaud},
+ Volume = {5},
+ Year = {2012},
+ Publisher = {Springer Science \& Business Media}
+}
+
+@Article{ gjesdal2011nature,
+ Title = {Cardiac remodeling at the population level -- risk
+ factors, screening, and outcomes},
+ Author = {Gjesdal, Ola and Bluemke, David A and Lima, Joao A},
+ Journal = {Nature Reviews Cardiology},
+ Year = {2011},
+ Number = {12},
+ Pages = {673--685},
+ Volume = {8},
+ File = {:gjesdal11.pdf:PDF},
+ Publisher = {Nature Publishing Group},
+ timestamp = {2014/09/17}
+}
+
+@Article{ glower1985circ,
+ Title = {Linearity of the Frank-Starling relationship in the intact
+ heart: the concept of preload recruitable stroke work.},
+ Author = {Glower, D D and Spratt, J A and Snow, N D and Kabas, J S
+ and Davis, J W and Olsen, C O and Tyson, G S and Sabiston,
+ D C and Rankin, J S},
+ Journal = {Circulation},
+ Year = {1985},
+ Number = {5},
+ Pages = {994-1009},
+ Volume = {71},
+ Abstract = {The Frank-Starling relationship generally has been
+ examined with filling pressure as the index of preload,
+ resulting in a curvilinear function that plateaus at higher
+ filling pressures. To investigate this relationship further
+ in the intact heart, 32 dogs were chronically instrumented
+ with left ventricular and pleural micromanometers and with
+ regional (10 dogs) or global (22 dogs) ultrasonic dimension
+ transducers. Seven days after implantation, left
+ ventricular pressure and regional or global dimensions were
+ recorded in the conscious state. After autonomic blockade,
+ preload was varied by vena caval occlusion. Myocardial
+ function was assessed by calculating regional or global
+ stroke work, and preload was measured as end-diastolic
+ segment length or chamber volume. The relationship between
+ stroke work and either end-diastolic segment length or
+ chamber volume (termed the preload recruitable stroke work
+ relationship) was highly linear in every study (mean r =
+ .97) and could be quantified by a slope (MW) and
+ x-intercept (LW). Previous nonlinear relationships between
+ stroke work and filling pressure seemed to reflect the
+ exponential diastolic pressure-volume curve. Over the
+ physiologic range of systolic arterial pressures produced
+ by infusion of nitroprusside or phenylephrine, no
+ significant change was observed in MW or LW in the normal
+ dog. Calcium infusion increased both regional and global MW
+ by 71 +/- 19% and 65 +/- 9%, respectively (p less than
+ .02), with no significant change in LW. To normalize for
+ ventricular geometry and heart rate, stroke work was
+ computed from circumferential stress-strain data and
+ converted to myocardial power output, which was then
+ plotted against end-diastolic circumferential strain. This
+ relationship also was highly linear, and the slope, Mmp
+ (mW/cm3 of myocardium), is proposed as a potential measure
+ of intrinsic myocardial performance independent of loading,
+ geometry, and heart rate.},
+ DOI = {10.1161/01.CIR.71.5.994},
+ EPrint = {http://circ.ahajournals.org/content/71/5/994.full.pdf+html},
+ File = {glower85.pdf:glower85.pdf:PDF},
+ timestamp = {2015/09/15},
+ URL = {http://circ.ahajournals.org/content/71/5/994.abstract}
+}
+
+@InCollection{ glowinski-le-tallec-ravachol-tsikkinis-92,
+ Address = {Washington, DC},
+ Author = {Glowinski, R. and Le Tallec, P. and Ravachol, M. and
+ Tsikkinis, V.},
+ BookTitle = {Finite elements in fluids, Vol.\ 8 (Huntsville, AL, 1989)},
+ mrnumber = {94b:65146},
+ mrreviewer = {Rolf Rannacher},
+ Pages = {137--163},
+ Publisher = {Hemisphere},
+ Title = {Numerical solution of the {N}avier-{S}tokes equations
+ modeling the flow of two incompressible nonmiscible viscous
+ fluids},
+ Year = {1992}
+}
+
+###InCollection{ glowinski-le-tallec-ravachol-tsikkinis-92,
+ Address = {Washington, DC},
+ Author = {Glowinski, R. and Le Tallec, P. and Ravachol, M. and
+ Tsikkinis, V.},
+ BookTitle = {Finite elements in fluids, Vol.\ 8 (Huntsville, AL, 1989)},
+ mrnumber = {94b:65146},
+ mrreviewer = {Rolf Rannacher},
+ Pages = {137--163},
+ Publisher = {Hemisphere},
+ Title = {Numerical solution of the {N}avier-{S}tokes equations
+ modeling the flow of two incompressible nonmiscible viscous
+ fluids},
+ Year = {1992}
+}
+
+@Article{ glowinski-pan-hesla-joseph-99,
+ Author = {Glowinski, R. and Pan, T.W. and Hesla, T.I. and Joseph,
+ D.D.},
+ Journal = {Int. J. of Multiphase Flow},
+ Pages = {755-794},
+ Title = {A distributed {Lagrange} mutiplier/fictitious domain
+ method for particulate flows},
+ Volume = {25},
+ Year = {1999}
+}
+
+###Article{ glowinski-pan-hesla-joseph-99,
+ Author = {Glowinski, R. and Pan, T.W. and Hesla, T.I. and Joseph,
+ D.D.},
+ Journal = {Int. J. of Multiphase Flow},
+ Pages = {755-794},
+ Title = {A distributed {Lagrange} mutiplier/fictitious domain
+ method for particulate flows},
+ Volume = {25},
+ Year = {1999}
+}
+
+@Article{ glowinski-pan-periaux-94,
+ Author = {Glowinski, R. and Pan, T.W. and P{\'e}riaux, J.},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Number = {3-4},
+ Pages = {283--303},
+ Title = {A fictitious domain method for {D}irichlet problem and
+ applications},
+ Volume = {111},
+ Year = {1994}
+}
+
+###Article{ glowinski-pan-periaux-94,
+ Author = {Glowinski, R. and Pan, T.W. and P{\'e}riaux, J.},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Number = {3-4},
+ Pages = {283--303},
+ Title = {A fictitious domain method for {D}irichlet problem and
+ applications},
+ Volume = {111},
+ Year = {1994}
+}
+
+@Article{ glowinski-pironneau-79,
+ Author = {Glowinski, R. and Pironneau, O.},
+ Journal = {Numer. Math.},
+ Pages = {397-424},
+ Title = {On a mixed finite element approximation of the {Stokes}
+ problem},
+ Volume = {33},
+ Year = {1979}
+}
+
+###Article{ glowinski-pironneau-79,
+ Author = {Glowinski, R. and Pironneau, O.},
+ Journal = {Numer. Math.},
+ Pages = {397-424},
+ Title = {On a mixed finite element approximation of the {Stokes}
+ problem},
+ Volume = {33},
+ Year = {1979}
+}
+
+@Article{ glowinski-pironneau-79b,
+ Author = {Glowinski, R. and Pironneau, O.},
+ Journal = {SIAM},
+ Month = {April},
+ Number = {2},
+ Pages = {167-212},
+ Title = {Numerical methods for the first biharmonic equation and
+ for the two-dimensional {Stokes} problem},
+ Volume = {21},
+ Year = {1979}
+}
+
+###Article{ glowinski-pironneau-79b,
+ Author = {Glowinski, R. and Pironneau, O.},
+ Journal = {SIAM},
+ Month = {April},
+ Number = {2},
+ Pages = {167-212},
+ Title = {Numerical methods for the first biharmonic equation and
+ for the two-dimensional {Stokes} problem},
+ Volume = {21},
+ Year = {1979}
+}
+
+@Article{ glowinski-pironneau-92,
+ Author = {Glowinski, R. and Pironneau, O.},
+ Journal = {Annu. Rev. Fluid Mech.},
+ Pages = {167-204},
+ Title = {Finite element methods for {Navier-Stokes} equations},
+ Volume = {24},
+ Year = {1992}
+}
+
+###Article{ glowinski-pironneau-92,
+ Author = {Glowinski, R. and Pironneau, O.},
+ Journal = {Annu. Rev. Fluid Mech.},
+ Pages = {167-204},
+ Title = {Finite element methods for {Navier-Stokes} equations},
+ Volume = {24},
+ Year = {1992}
+}
+
+@Article{ goda-79,
+ Title = {{A multistep technique with implicit difference schemes
+ for calculating two- or three-dimensional cavity flows}},
+ Author = {Goda, K.},
+ Journal = jcp,
+ Volume = {30},
+ Pages = {76--95},
+ Year = {1979}
+}
+
+###Article{ goda-79,
+ Title = {{A multistep technique with implicit difference schemes
+ for calculating two- or three-dimensional cavity flows}},
+ Author = {Goda, K.},
+ Journal = jcp,
+ Volume = {30},
+ Pages = {76--95},
+ Year = {1979}
+}
+
+@Book{ godlewski-raviart-91,
+ Author = {Godlewski, E. and Raviart, P.-A.},
+ Publisher = {Ellipses},
+ Title = {Hyperbolic systems of conservation laws},
+ Year = {1991}
+}
+
+###Book{ godlewski-raviart-91,
+ Author = {Godlewski, E. and Raviart, P.-A.},
+ Publisher = {Ellipses},
+ Title = {Hyperbolic systems of conservation laws},
+ Year = {1991}
+}
+
+@Article{ goektepe2010,
+ Year = {2010},
+ ISSN = {0178-7675},
+ Journal = {Computational Mechanics},
+ Volume = {45},
+ Issue = {2-3},
+ DOI = {10.1007/s00466-009-0434-z},
+ Title = {Electromechanics of the heart: a unified approach to the
+ strongly coupled excitationâcontraction problem},
+ Publisher = {Springer-Verlag},
+ Keywords = {Coupled problems; Cardiac electromechanics;
+ Excitationâcontraction; Finite elements},
+ Author = {Goektepe, S. and Kuhl, E.},
+ Pages = {227-243},
+ Language = {English}
+}
+
+@Article{ goktepe2010jmps,
+ Title = {A generic approach towards finite growth with examples of
+ athlete's heart, cardiac dilation, and cardiac wall
+ thickening},
+ Author = {Serdar Göktepe and Oscar John Abilez and Ellen Kuhl},
+ Journal = {Journal of the Mechanics and Physics of Solids },
+ Year = {2010},
+ Number = {10},
+ Pages = {1661 - 1680},
+ Volume = {58},
+ Abstract = {The objective of this work is to establish a generic
+ continuum-based computational concept for finite growth of
+ living biological tissues. The underlying idea is the
+ introduction of an incompatible growth configuration which
+ naturally introduces a multiplicative decomposition of the
+ deformation gradient into an elastic and a growth part. The
+ two major challenges of finite growth are the kinematic
+ characterization of the growth tensor and the
+ identification of mechanical driving forces for its
+ evolution. Motivated by morphological changes in cell
+ geometry, we illustrate a micromechanically motivated
+ ansatz for the growth tensor for cardiac tissue that can
+ capture both strain-driven ventricular dilation and
+ stress-driven wall thickening. Guided by clinical
+ observations, we explore three distinct pathophysiological
+ cases: athlete's heart, cardiac dilation, and cardiac wall
+ thickening. We demonstrate the computational solution of
+ finite growth within a fully implicit incremental iterative
+ Newton? Raphson based finite element solution scheme. The
+ features of the proposed approach are illustrated and
+ compared for the three different growth pathologies in
+ terms of a generic bi-ventricular heart model. },
+ DOI = {http://dx.doi.org/10.1016/j.jmps.2010.07.003},
+ File = {goktepe10.pdf:goktepe10.pdf:PDF},
+ ISSN = {0022-5096},
+ Keywords = {Biological growth},
+ timestamp = {2015/09/22},
+ URL = {http://www.sciencedirect.com/science/article/pii/S0022509610001328}
+}
+
+@Article{ goktepe2010jtb,
+ Title = {A multiscale model for eccentric and concentric cardiac
+ growth through sarcomerogenesis},
+ Author = {G{\"o}ktepe, S. and Abilez, O. J. and Parker, K. K. and
+ Kuhl, E.},
+ Journal = {Journal of Theoretical biology},
+ Year = {2010},
+ Number = {3},
+ Pages = {433--442},
+ Volume = {265},
+ File = {:goktepe10.pdf:PDF},
+ Publisher = {Elsevier},
+ timestamp = {2014/11/25}
+}
+
+@Article{ gorlin-1951,
+ Author = {Gorlin, R. and Gorlin, S.C.},
+ Journal = {Am. Heart J.},
+ Pages = {1-29},
+ Title = {Hydraulic formula for calculation of the area of the
+ stenotic mitral valve, other cardiac valves, and central
+ circulatory shunts.},
+ Volume = {41},
+ Year = {1951}
+}
+
+###Article{ gorlin-1951,
+ Author = {Gorlin, R. and Gorlin, S.C.},
+ Journal = {Am. Heart J.},
+ Pages = {1-29},
+ Title = {Hydraulic formula for calculation of the area of the
+ stenotic mitral valve, other cardiac valves, and central
+ circulatory shunts.},
+ Volume = {41},
+ Year = {1951}
+}
+
+@Article{ goubergrits2015mri,
+ Title = {Is MRI-based CFD able to improve clinical treatment of
+ coarctations of aorta?},
+ Author = {Goubergrits, L and Riesenkampff, E and Yevtushenko, P and
+ Schaller, J and Kertzscher, U and Berger, F and Kuehne, T},
+ Journal = {Annals of biomedical engineering},
+ Volume = {43},
+ Number = {1},
+ Pages = {168--176},
+ Year = {2015},
+ Publisher = {Springer}
+}
+
+###Article{ goubergrits2015mri,
+ Title = {Is MRI-based CFD able to improve clinical treatment of
+ coarctations of aorta?},
+ Author = {Goubergrits, L and Riesenkampff, E and Yevtushenko, P and
+ Schaller, J and Kertzscher, U and Berger, F and Kuehne, T},
+ Journal = {Annals of biomedical engineering},
+ Volume = {43},
+ Number = {1},
+ Pages = {168--176},
+ Year = {2015},
+ Publisher = {Springer}
+}
+
+@Article{ goubergrits_impact_2013,
+ langid = {english},
+ Title = {The {{Impact}} of {{MRI}}-Based {{Inflow}} for the
+ {{Hemodynamic Evaluation}} of {{Aortic Coarctation}}},
+ Volume = {41},
+ ISSN = {1573-9686},
+ URL = {https://doi.org/10.1007/s10439-013-0879-2},
+ DOI = {10.1007/s10439-013-0879-2},
+ Abstract = {Aortic coarctation (CoA) accounting for 3â11\% of
+ congenital heart disease can be successfully treated.
+ Long-term results, however, have revealed decreased life
+ expectancy associated with abnormal hemodynamics.
+ Accordingly, an assessment of hemodynamics is the key
+ factor in treatment decisions and successful long-term
+ results. In this study, 3D angiography whole heart (3DWH)
+ and 4D phase-contrast magnetic resonance imaging (MRI) data
+ were acquired. Geometries of the thoracic aorta with CoAs
+ were reconstructed using ZIB-Amira software. X-ray
+ angiograms were used to evaluate the post-treatment
+ geometry. Computational fluid dynamics models in three
+ patients were created to simulate pre- and post-treatment
+ situations using the FLUENT program. The aim of the study
+ was to investigate the impact of the inlet velocity profile
+ (plug vs. MRI-based) with a focus on the peak systole
+ pressure gradient and wall shear stress (WSS). Results show
+ that helical flow at the aorta inlet can significantly
+ affect the assessment of pressure drop and WSS. Simplified
+ plug inlet velocity profiles significantly (p {$<$} 0.05)
+ overestimate the pressure drop in pre- and post-treatment
+ geometries and significantly (p {$<$} 0.05) underestimate
+ surface-averaged WSS. We conclude that the use of the
+ physiologically correct but time-expensive 4D MRI-based in
+ vivo velocity profile in CFD studies may be an important
+ step towards a patient-specific analysis of CoA
+ hemodynamics.},
+ Number = {12},
+ JournalTitle = {Annals of Biomedical Engineering},
+ ShortJournal = {Ann Biomed Eng},
+ URLDate = {2019-02-20},
+ Year = {2013-12-01},
+ Pages = {2575-2587},
+ Author = {Goubergrits, Leonid and Mevert, R. and Yevtushenko, P. and
+ Schaller, J. and Kertzscher, U. and Meier, S. and Schubert,
+ S. and Riesenkampff, E. and Kuehne, T.}
+}
+
+@Article{ goubergrits_patient-specific_2019,
+ langid = {english},
+ Title = {Patient-Specific Requirements and Clinical Validation of
+ {{MRI}}-Based Pressure Mapping: {{A}} Two-Center Study in
+ Patients with Aortic Coarctation},
+ Volume = {49},
+ ISSN = {1522-2586},
+ URL = {https://onlinelibrary.wiley.com/doi/abs/10.1002/jmri.26230},
+ DOI = {10.1002/jmri.26230},
+ ShortTitle = {Patient-Specific Requirements and Clinical Validation of
+ {{MRI}}-Based Pressure Mapping},
+ Abstract = {Background Invasive peak-to-peak pressure gradients are
+ the current clinical reference standard for assessing
+ aortic coarctation. To obtain them, patients need to
+ undergo arterial heart catheterization. Unless an
+ intervention is performed, the procedure remains purely
+ diagnostic, while the concomitant risks remain. Purpose To
+ validate MRI-based pressure mapping against pressure drop
+ derived from heart catheterization and to define minimal
+ clinical requirements. Study Type Prospective clinical
+ validation study. Population Twenty-seven coarctation
+ patients with an indicated heart catheterization were
+ enrolled at two clinical centers. MRI Sequences 1.5T
+ including 4D velocity-encoded MRI and 3D anatomical imaging
+ of the aorta. Assessment Pressure drop across the stenosis
+ was calculated by pressure mapping based on the pressure
+ Poisson equation. Calculated pressure drops were compared
+ with catheter measured data. Spatial and temporal
+ resolution were analyzed using in silico phantom-based data
+ as well as in vivo measurements. Statistics Pressure drop
+ was compared to peak-to-peak measurements. A two-sample
+ paired mean equivalence test was used. Results In patients
+ without imaging artifacts and a required spatial resolution
+ â¥5 voxel/diameter, significant equivalence of pressure
+ mapping compared to heart catheterization was found (17.5
+ ± 6.49 vs. 16.6 ± 6.53 mmHg, P {$<$} 0.001). Data
+ Conclusion Pressure mapping provides equivalent accuracy to
+ pressure drop obtained from heart catheterization in
+ patients 1) without previous stenting and 2) with
+ sufficient spatial image resolution (at least 5
+ voxels/diameter). In these patients the method can reliably
+ be performed prior to the actual procedure, and thus allows
+ safe noninvasive treatment planning based on MRI. Level of
+ Evidence: 2 Technical Efficacy: Stage 3 J. Magn. Reson.
+ Imaging 2019;49:81â89.},
+ Number = {1},
+ JournalTitle = {Journal of Magnetic Resonance Imaging},
+ URLDate = {2019-01-29},
+ Year = {2019},
+ Pages = {81-89},
+ Author = {Goubergrits, Leonid and Hellmeier, Florian and Neumann,
+ Dominik and Mihalef, Viorel and Gulsun, Mehmet A. and
+ Chinali, Marcello and Secinaro, Aurelio and Runte, Kilian
+ and Schubert, Stephan and Berger, Felix and Kuehne, Titus
+ and Hennemuth, Anja and Kelm, Marcus}
+}
+
+@Book{ graf-altinakar-99,
+ Author = {Graf, H. and Altinakar, M.S.},
+ Publisher = {Presses polytechniques et universitaires romandes},
+ Series = {Trait{\'e} de g{\'e}nie civil de l'{\'e}cole polytechnique
+ f{\'e}d{\'e}rale de Lausanne},
+ Title = {Hydraulique fluviale : {\'e}coulement permanent uniforme
+ et non uniforme},
+ Year = {1999}
+}
+
+###Book{ graf-altinakar-99,
+ Author = {Graf, H. and Altinakar, M.S.},
+ Publisher = {Presses polytechniques et universitaires romandes},
+ Series = {Trait{\'e} de g{\'e}nie civil de l'{\'e}cole polytechnique
+ f{\'e}d{\'e}rale de Lausanne},
+ Title = {Hydraulique fluviale : {\'e}coulement permanent uniforme
+ et non uniforme},
+ Year = {1999}
+}
+
+@Unpublished{ grandmont-desjardin-esteban,
+ Author = {Grandmont, C. and Desjardin, B. and Esteban, M.},
+ Title = {in preparation}
+}
+
+###Unpublished{ grandmont-desjardin-esteban,
+ Author = {Grandmont, C. and Desjardin, B. and Esteban, M.},
+ Title = {in preparation}
+}
+
+@Article{ grandmont-guimet-maday-01,
+ Author = {Grandmont, C. and Guimet, V. and Maday, Y.},
+ fjournal = {Mathematical Models \& Methods in Applied Sciences},
+ ISSN = {0218-2025},
+ Journal = {Math. Models Methods Appl. Sci.},
+ mrclass = {65M60 (65M12 74F10 74H99 76M25)},
+ mrnumber = {MR1859827 (2002h:65152)},
+ Number = {8},
+ Pages = {1349--1377},
+ Title = {Numerical analysis of some decoupling techniques for the
+ approximation of the unsteady fluid structure interaction},
+ Volume = {11},
+ Year = {2001}
+}
+
+###Article{ grandmont-guimet-maday-01,
+ Author = {Grandmont, C. and Guimet, V. and Maday, Y.},
+ fjournal = {Mathematical Models \& Methods in Applied Sciences},
+ ISSN = {0218-2025},
+ Journal = {Math. Models Methods Appl. Sci.},
+ mrclass = {65M60 (65M12 74F10 74H99 76M25)},
+ mrnumber = {MR1859827 (2002h:65152)},
+ Number = {8},
+ Pages = {1349--1377},
+ Title = {Numerical analysis of some decoupling techniques for the
+ approximation of the unsteady fluid structure interaction},
+ Volume = {11},
+ Year = {2001}
+}
+
+@InCollection{ grandmont-maday-98,
+ Address = {Providence, RI},
+ Author = {Grandmont, C. and Maday, Y.},
+ BookTitle = {Domain decomposition methods, 10 (Boulder, CO, 1997)},
+ Pages = {262--270},
+ Publisher = {Amer. Math. Soc.},
+ Series = {Contemp. Math.},
+ Title = {Nonconforming grids for the simulation of fluid-structure
+ interaction},
+ Volume = {218},
+ Year = {1998}
+}
+
+###InCollection{ grandmont-maday-98,
+ Address = {Providence, RI},
+ Author = {Grandmont, C. and Maday, Y.},
+ BookTitle = {Domain decomposition methods, 10 (Boulder, CO, 1997)},
+ Pages = {262--270},
+ Publisher = {Amer. Math. Soc.},
+ Series = {Contemp. Math.},
+ Title = {Nonconforming grids for the simulation of fluid-structure
+ interaction},
+ Volume = {218},
+ Year = {1998}
+}
+
+@Article{ grant1965notes,
+ Author = {Grant, Robert P.},
+ Title = {Notes on the muscular architecture of the left ventricle},
+ Journal = {Circulation},
+ Year = {1965},
+ Volume = {32},
+ Pages = {301--308},
+ Number = {2},
+ Publisher = {Am Heart Assoc}
+}
+
+@Article{ greenbaum1981,
+ Author = {Greenbaum, R. A. and Ho, S. Y. and Gibson, D. G. and
+ Becker, A. E. and Anderson, R. H.},
+ Title = {Left ventricular fibre architecture in man},
+ Volume = {45},
+ Number = {3},
+ Pages = {248-263},
+ Year = {1981},
+ Journal = {British Heart Journal}
+}
+
+@Article{ greenwood2012l,
+ Title = {Cardiovascular magnetic resonance and single-photon
+ emission computed tomography for diagnosis of coronary
+ heart disease (CE-MARC): a prospective trial.},
+ Author = {Greenwood, John P. and Maredia, Neil and Younger, John F.
+ and Brown, Julia M. and Nixon, Jane and Everett, Colin C.
+ and Bijsterveld, Petra and Ridgway, John P. and Radjenovic,
+ Aleksandra and Dickinson, Catherine J. and Ball, Stephen G.
+ and Plein, Sven},
+ Journal = {Lancet},
+ Year = {2012},
+ Month = {Feb},
+ Number = {9814},
+ Pages = {453--460},
+ Volume = {379},
+ Abstract = {In patients with suspected coronary heart disease,
+ single-photon emission computed tomography (SPECT) is the
+ most widely used test for the assessment of myocardial
+ ischaemia, but its diagnostic accuracy is reported to be
+ variable and it exposes patients to ionising radiation. The
+ aim of this study was to establish the diagnostic accuracy
+ of a multiparametric cardiovascular magnetic resonance
+ (CMR) protocol with x-ray coronary angiography as the
+ reference standard, and to compare CMR with SPECT, in
+ patients with suspected coronary heart disease.In this
+ prospective trial patients with suspected angina pectoris
+ and at least one cardiovascular risk factor were scheduled
+ for CMR, SPECT, and invasive x-ray coronary angiography.
+ CMR consisted of rest and adenosine stress perfusion, cine
+ imaging, late gadolinium enhancement, and MR coronary
+ angiography. Gated adenosine stress and rest SPECT used
+ (99m)Tc tetrofosmin. The primary outcome was diagnostic
+ accuracy of CMR. This trial is registered at
+ controlled-trials.com, number ISRCTN77246133.In the 752
+ recruited patients, 39\% had significant CHD as identified
+ by x-ray angiography. For multiparametric CMR the
+ sensitivity was 86·5\% (95\% CI 81·8-90·1), specificity
+ 83·4\% (79·5-86·7), positive predictive value 77·2\%,
+ (72·1-81·6) and negative predictive value 90·5\%
+ (87·1-93·0). The sensitivity of SPECT was 66·5\% (95\%
+ CI 60·4-72·1), specificity 82·6\% (78·5-86·1),
+ positive predictive value 71·4\% (65·3-76·9), and
+ negative predictive value 79·1\% (74·8-82·8). The
+ sensitivity and negative predictive value of CMR and SPECT
+ differed significantly (p<0·0001 for both) but specificity
+ and positive predictive value did not (p=0·916 and
+ p=0·061, respectively).CE-MARC is the largest,
+ prospective, real world evaluation of CMR and has
+ established CMR's high diagnostic accuracy in coronary
+ heart disease and CMR's superiority over SPECT. It should
+ be adopted more widely than at present for the
+ investigation of coronary heart disease.British Heart Foundation.},
+ DOI = {10.1016/S0140-6736(11)61335-4},
+ Institution = {Multidisciplinary Cardiovascular Research Centre and Leeds
+ Institute of Genetics, Health and Therapeutics, University
+ of Leeds, Leeds, UK. j.greenwood@leeds.ac.uk},
+ Keywords = {Adenosine, diagnostic use; Contrast Media; Coronary
+ Angiography; Coronary Disease, diagnosis/radionuclide
+ imaging; Gadolinium DTPA, diagnostic use; Humans; Magnetic
+ Resonance Angiography; Myocardial Perfusion Imaging;
+ Predictive Value of Tests; Sensitivity and Specificity;
+ Tomography, Emission-Computed, Single-Photon},
+ Language = {eng},
+ medline-pst = {ppublish},
+ owner = {stoeckc},
+ pii = {S0140-6736(11)61335-4},
+ pmid = {22196944},
+ timestamp = {2015.07.24},
+ URL = {http://dx.doi.org/10.1016/S0140-6736(11)61335-4}
+}
+
+@Article{ grenier-99,
+ Author = {Grenier, E.},
+ Journal = {ESIAM: Math. Model. Numer. Anal.},
+ Number = {5},
+ Pages = {965--970},
+ Title = {On the derivation of homogeneous hydrostatic equations},
+ Volume = {33},
+ Year = {1999}
+}
+
+###Article{ grenier-99,
+ Author = {Grenier, E.},
+ Journal = {ESIAM: Math. Model. Numer. Anal.},
+ Number = {5},
+ Pages = {965--970},
+ Title = {On the derivation of homogeneous hydrostatic equations},
+ Volume = {33},
+ Year = {1999}
+}
+
+@Article{ grinberg_outflow_2008,
+ Title = {Outflow Boundary Conditions for Arterial Networks with
+ Multiple Outlets},
+ Volume = {36},
+ Number = {9},
+ JournalTitle = {Annals of biomedical engineering},
+ Year = {2008},
+ Pages = {1496--1514},
+ Author = {Grinberg, Leopold and Karniadakis, George Em}
+}
+
+@Book{ grjotheim-kvande-93,
+ Author = {Grjotheim, K. and Kvande, H.},
+ Publisher = {Aluminium-Verlag},
+ Title = {Introduction to Aluminium electrolysis},
+ Year = {1993}
+}
+
+###Book{ grjotheim-kvande-93,
+ Author = {Grjotheim, K. and Kvande, H.},
+ Publisher = {Aluminium-Verlag},
+ Title = {Introduction to Aluminium electrolysis},
+ Year = {1993}
+}
+
+@Article{ grobbelaar-08,
+ Author = {Grobbelaar-Van Dalsen, M.},
+ date-added = {2012-02-27 13:51:21 +0000},
+ date-modified = {2012-02-27 13:52:42 +0000},
+ DOI = {10.1007/s00021-006-0236-4},
+ Journal = {J. Math. Fluid Mech.},
+ Number = {3},
+ Pages = {388--401},
+ Title = {On a fluid-structure model in which the dynamics of the
+ structure involves the shear stress due to the fluid},
+ Volume = {10},
+ Year = {2008}
+}
+
+###Article{ grobbelaar-08,
+ Author = {Grobbelaar-Van Dalsen, M.},
+ date-added = {2012-02-27 13:51:21 +0000},
+ date-modified = {2012-02-27 13:52:42 +0000},
+ DOI = {10.1007/s00021-006-0236-4},
+ Journal = {J. Math. Fluid Mech.},
+ Number = {3},
+ Pages = {388--401},
+ Title = {On a fluid-structure model in which the dynamics of the
+ structure involves the shear stress due to the fluid},
+ Volume = {10},
+ Year = {2008},
+ bdsk-url-1 = {http://dx.doi.org/10.1007/s00021-006-0236-4}
+}
+
+@Article{ grobbelaar-09,
+ Author = {Grobbelaar-Van Dalsen, M.},
+ date-added = {2012-02-27 13:52:50 +0000},
+ date-modified = {2012-02-27 13:53:16 +0000},
+ DOI = {10.1080/00036810903114841},
+ Journal = {Appl. Anal.},
+ Number = {7},
+ Pages = {1053--1065},
+ Title = {A new approach to the stabilization of a fluid-structure
+ interaction model},
+ Volume = {88},
+ Year = {2009}
+}
+
+###Article{ grobbelaar-09,
+ Author = {Grobbelaar-Van Dalsen, M.},
+ date-added = {2012-02-27 13:52:50 +0000},
+ date-modified = {2012-02-27 13:53:16 +0000},
+ DOI = {10.1080/00036810903114841},
+ Journal = {Appl. Anal.},
+ Number = {7},
+ Pages = {1053--1065},
+ Title = {A new approach to the stabilization of a fluid-structure
+ interaction model},
+ Volume = {88},
+ Year = {2009},
+ bdsk-url-1 = {http://dx.doi.org/10.1080/00036810903114841}
+}
+
+@Article{ gudbjartsson1995rician,
+ Author = {Gudbjartsson, H{\'a}kon and Patz, Samuel},
+ Title = {{The Rician distribution of noisy MRI data}},
+ Journal = {{Magnetic Resonance in Medicine}},
+ Year = {1995},
+ Volume = {34},
+ Pages = {910--914},
+ Number = {6},
+ Publisher = {Wiley Online Library}
+}
+
+@Article{ guermond-96,
+ Author = {Guermond, J.-L.},
+ Journal = {M2AN},
+ Pages = {637-667},
+ Title = {Some implementation of projection methods for
+ {N}avier-{S}tokes equations},
+ Volume = 30,
+ Year = 1996
+}
+
+###Article{ guermond-96,
+ Author = {Guermond, J.-L.},
+ Journal = {M2AN},
+ Pages = {637-667},
+ Title = {Some implementation of projection methods for
+ {N}avier-{S}tokes equations},
+ Volume = 30,
+ Year = 1996
+}
+
+@Unpublished{ guermond-minev,
+ Author = {Guermond, J.L. and Minev, P.D.},
+ code = {mhd45},
+ Note = {to appear in Num. Meth. PDE},
+ Title = {Mixed finite element approximation of an {MHD} problem
+ involving conducting and insulating regions: the {3D}
+ case}
+}
+
+###Unpublished{ guermond-minev,
+ Author = {Guermond, J.L. and Minev, P.D.},
+ code = {mhd45},
+ Note = {to appear in Num. Meth. PDE},
+ Title = {Mixed finite element approximation of an {MHD} problem
+ involving conducting and insulating regions: the {3D}
+ case}
+}
+
+@Article{ guermond-minev-shen-06,
+ Author = {Guermond, J.-L. and Minev, P. and Shen, J.},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Pages = {6011-6045},
+ Title = {An Overview of Projection methods for incompressible
+ flows},
+ Volume = 195,
+ Year = 2006
+}
+
+###Article{ guermond-minev-shen-06,
+ Author = {Guermond, J.-L. and Minev, P. and Shen, J.},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Pages = {6011-6045},
+ Title = {An Overview of Projection methods for incompressible
+ flows},
+ Volume = 195,
+ Year = 2006
+}
+
+@Unpublished{ guermond-minev-shen-xx,
+ Author = {Guermond, J.-L. and Minev, P. and Shen, J.},
+ Note = {Submitted to {\em Comp. Meth. Appl. Mech. Engng.}, 2004.},
+ Title = {An Overview of Projection methods for incompressible
+ flows}
+}
+
+###Unpublished{ guermond-minev-shen-xx,
+ Author = {Guermond, J.-L. and Minev, P. and Shen, J.},
+ Note = {Submitted to {\em Comp. Meth. Appl. Mech. Engng.}, 2004.},
+ Title = {An Overview of Projection methods for incompressible
+ flows}
+}
+
+@Article{ guermond-quartapelle-98,
+ Author = {Guermond, J.-L. and Quartapelle, L.},
+ fjournal = {International Journal for Numerical Methods in Fluids},
+ Journal = {Internat. J. Numer. Methods Fluids},
+ Number = {9},
+ Pages = {1039--1053},
+ Title = {On stability and convergence of projection methods based
+ on pressure {P}oisson equation},
+ Volume = {26},
+ Year = {1998}
+}
+
+###Article{ guermond-quartapelle-98,
+ Author = {Guermond, J.-L. and Quartapelle, L.},
+ fjournal = {International Journal for Numerical Methods in Fluids},
+ Journal = {Internat. J. Numer. Methods Fluids},
+ Number = {9},
+ Pages = {1039--1053},
+ Title = {On stability and convergence of projection methods based
+ on pressure {P}oisson equation},
+ Volume = {26},
+ Year = {1998}
+}
+
+@Article{ guermond03_projmetherror,
+ Author = "Guermond, J.~L. and Shien, J.",
+ Title = "{On the error estimates for the rotational
+ pressure-correction projection methods}",
+ Journal = mc,
+ Volume = "73",
+ Number = "248",
+ Pages = "1719--1737",
+ Year = "2003"
+}
+
+###Article{ guermond03_projmetherror,
+ Author = "Guermond, J.~L. and Shien, J.",
+ Title = "{On the error estimates for the rotational
+ pressure-correction projection methods}",
+ Journal = mc,
+ Volume = "73",
+ Number = "248",
+ Pages = "1719--1737",
+ Year = "2003"
+}
+
+@Article{ guermond06_overview,
+ Author = "Guermond, J.~L and Minev, P. and Shen, J.",
+ Title = "An overview of projection methods for incompressible
+ flows",
+ Journal = cma,
+ Volume = "195",
+ Number = "44--47",
+ Pages = "6011--6045",
+ Year = "2006"
+}
+
+###Article{ guermond06_overview,
+ Author = "Guermond, J.~L and Minev, P. and Shen, J.",
+ Title = "An overview of projection methods for incompressible
+ flows",
+ Journal = cma,
+ Volume = "195",
+ Number = "44--47",
+ Pages = "6011--6045",
+ Year = "2006"
+}
+
+@Article{ guermond06_projmeththeory,
+ Author = "Guermond, J.~L. and Quartapelle, L.",
+ Title = "{On stability and convergence of projection methods based
+ on pressure Poisson equation}",
+ Journal = ijnmf,
+ Volume = "26",
+ Pages = "1039--1053",
+ Year = "2006"
+}
+
+###Article{ guermond06_projmeththeory,
+ Author = "Guermond, J.~L. and Quartapelle, L.",
+ Title = "{On stability and convergence of projection methods based
+ on pressure Poisson equation}",
+ Journal = ijnmf,
+ Volume = "26",
+ Pages = "1039--1053",
+ Year = "2006"
+}
+
+@Article{ guermond2006overview,
+ Title = {An overview of projection methods for incompressible
+ flows},
+ Author = {Guermond, JL and Minev, Peter and Shen, Jie},
+ Journal = {Computer methods in applied mechanics and engineering},
+ Volume = {195},
+ Number = {44},
+ Pages = {6011--6045},
+ Year = {2006},
+ Publisher = {Elsevier}
+}
+
+@Article{ guermond2006reviewcmame,
+ Title = {An overview of projection methods for incompressible
+ flows},
+ Author = {Guermond, J.-L. and Minev, P. and Shen, Jie},
+ Journal = {Computer Methods in Applied Mechanics and Engineering},
+ Year = {2006},
+ Number = {44-47},
+ Volume = {195}
+}
+
+@Article{ guermond98_nsanalysis,
+ Author = "Guermond, J.~L. and Quartapelle, L.",
+ Title = "{On the approximation of the unsteady {Navier-Stokes}
+ equations by finite element projection methods}",
+ Journal = {Num. Math.},
+ Volume = "80",
+ Number = "",
+ Pages = "207--238",
+ Year = "1998"
+}
+
+###Article{ guermond98_nsanalysis,
+ Author = "Guermond, J.~L. and Quartapelle, L.",
+ Title = "{On the approximation of the unsteady {Navier-Stokes}
+ equations by finite element projection methods}",
+ Journal = {Num. Math.},
+ Volume = "80",
+ Number = "",
+ Pages = "207--238",
+ Year = "1998"
+}
+
+@Article{ guermond_overview_2006,
+ langid = {english},
+ Title = {An Overview of Projection Methods for Incompressible
+ Flows},
+ Volume = {195},
+ ISSN = {00457825},
+ URL = {http://linkinghub.elsevier.com/retrieve/pii/S0045782505004640},
+ DOI = {10.1016/j.cma.2005.10.010},
+ Number = {44-47},
+ JournalTitle = {Computer Methods in Applied Mechanics and Engineering},
+ URLDate = {2016-10-13},
+ Date = {2006-09},
+ Pages = {6011-6045},
+ Author = {Guermond, J.L. and Minev, P. and Shen, Jie}
+}
+
+@Article{ guerra_data_2018,
+ langid = {english},
+ Title = {A Data Assimilation Approach for Non-{{Newtonian}} Blood
+ Flow Simulations in {{3D}} Geometries},
+ Volume = {321},
+ ISSN = {00963003},
+ URL = {https://linkinghub.elsevier.com/retrieve/pii/S0096300317307282},
+ DOI = {10.1016/j.amc.2017.10.029},
+ JournalTitle = {Applied Mathematics and Computation},
+ URLDate = {2019-02-28},
+ Year = {2018-03},
+ Pages = {176-194},
+ Author = {Guerra, Telma and Catarino, Catarina and Mestre, Tania and
+ Santos, Sara and Tiago, Jorge and Sequeira, Adelia}
+}
+
+@Article{ guibert2014group,
+ Title = {Group-wise construction of reduced models for
+ understanding and characterization of pulmonary blood flows
+ from medical images},
+ Author = {Guibert, Romain and Mcleod, Kristin and Caiazzo, Alfonso
+ and Mansi, Tommaso and Fern{\'a}ndez, Miguel A and
+ Sermesant, Maxime and Pennec, Xavier and Vignon-Clementel,
+ Irene E and Boudjemline, Younes and Gerbeau,
+ Jean-Fr{\'e}d{\'e}ric},
+ Journal = {Medical Image Analysis},
+ Volume = {18},
+ Number = {1},
+ Pages = {63--82},
+ Year = {2014},
+ Publisher = {Elsevier}
+}
+
+@Article{ guidoboni-08,
+ Author = {Guidoboni, G. and Glowinski, R. and Cavallini, N. and
+ Canic, S. and Lapin, S.},
+ Journal = {Appl. Math. Lett.},
+ Note = {{D}{O}{I}: 10.1016/j.aml.2008.05.006},
+ Title = {A kinematically coupled time-splitting scheme for
+ fluid-structure interaction in blood flow},
+ Volume = {In Press},
+ Year = {2008}
+}
+
+###Article{ guidoboni-08,
+ Author = {Guidoboni, G. and Glowinski, R. and Cavallini, N. and
+ Canic, S. and Lapin, S.},
+ Journal = {Appl. Math. Lett.},
+ Note = {{D}{O}{I}: 10.1016/j.aml.2008.05.006},
+ Title = {A kinematically coupled time-splitting scheme for
+ fluid-structure interaction in blood flow},
+ Volume = {In Press},
+ Year = {2008}
+}
+
+@Article{ guillard-farhat-00,
+ Author = {Guillard, H. and Farhat, C.},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Number = {11-12},
+ Pages = {1467--1482},
+ Title = {On the significance of the geometric conservation law for
+ flow computations on moving meshes},
+ Volume = {190},
+ Year = {2000}
+}
+
+###Article{ guillard-farhat-00,
+ Author = {Guillard, H. and Farhat, C.},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Number = {11-12},
+ Pages = {1467--1482},
+ Title = {On the significance of the geometric conservation law for
+ flow computations on moving meshes},
+ Volume = {190},
+ Year = {2000}
+}
+
+@Article{ guillope-82,
+ Author = {Guillope, C.},
+ Journal = {Ann. Inst. Fourier Grenoble},
+ Number = {3},
+ Pages = {1-37},
+ Title = {Comportement {\`a} l'infini des solutions des
+ {\'e}quations de {Navier-Stokes} et propri{\'e}t{\'e}s des
+ ensembles fonctionnels invariants (ou attracteurs)},
+ Volume = {32},
+ Year = {1982}
+}
+
+###Article{ guillope-82,
+ Author = {Guillope, C.},
+ Journal = {Ann. Inst. Fourier Grenoble},
+ Number = {3},
+ Pages = {1-37},
+ Title = {Comportement {\`a} l'infini des solutions des
+ {\'e}quations de {Navier-Stokes} et propri{\'e}t{\'e}s des
+ ensembles fonctionnels invariants (ou attracteurs)},
+ Volume = {32},
+ Year = {1982}
+}
+
+@Article{ guillope3,
+ Author = {Guillope, C. and Saut, J-C.},
+ Journal = {Nonlinear Anal., Theory, Meth. Appl.},
+ Number = {9},
+ Pages = {849-869},
+ Title = {Existence results for the flow of viscoelastic fluids with
+ a differential constitutive law},
+ Volume = {15},
+ Year = {1990}
+}
+
+###Article{ guillope3,
+ Author = {Guillope, C. and Saut, J-C.},
+ Journal = {Nonlinear Anal., Theory, Meth. Appl.},
+ Number = {9},
+ Pages = {849-869},
+ Title = {Existence results for the flow of viscoelastic fluids with
+ a differential constitutive law},
+ Volume = {15},
+ Year = {1990}
+}
+
+@Book{ gunzburger-89,
+ Author = {Gunzburger, M.D.},
+ Publisher = {{Academic Press}},
+ Title = {Finite element methods for viscous incompressible flows~:
+ a guide to theory, practice, and algorithms},
+ Year = {1989}
+}
+
+###Book{ gunzburger-89,
+ Author = {Gunzburger, M.D.},
+ Publisher = {{Academic Press}},
+ Title = {Finite element methods for viscous incompressible flows~:
+ a guide to theory, practice, and algorithms},
+ Year = {1989}
+}
+
+@Article{ gunzburger-meir-peterson-91,
+ Annote = {mhd, existence, finite element},
+ Author = {Gunzburger, M.D. and Meir, A.J. and Peterson, J.S.},
+ code = {mhd8},
+ Journal = {Mathematics of Computation},
+ Month = {April},
+ Number = {194},
+ Pages = {523-563},
+ Title = {On the existence, uniqueness, and finite element
+ approximation of solutions of the equations of stationary,
+ incompressible magnetohydrodynamics},
+ Volume = {56},
+ Year = {1991}
+}
+
+###Article{ gunzburger-meir-peterson-91,
+ Annote = {mhd, existence, finite element},
+ Author = {Gunzburger, M.D. and Meir, A.J. and Peterson, J.S.},
+ code = {mhd8},
+ Journal = {Mathematics of Computation},
+ Month = {April},
+ Number = {194},
+ Pages = {523-563},
+ Title = {On the existence, uniqueness, and finite element
+ approximation of solutions of the equations of stationary,
+ incompressible magnetohydrodynamics},
+ Volume = {56},
+ Year = {1991}
+}
+
+@Book{ gunzburger_perspectives_2003,
+ Location = {{Philadelphia, PA}},
+ Title = {Perspectives in Flow Control and Optimization},
+ ISBN = {978-0-89871-527-9},
+ PageTotal = {261},
+ Series = {Advances in Design and Control},
+ Publisher = {{Society for Industrial and Applied Mathematics}},
+ Year = {2003},
+ Author = {Gunzburger, Max D.}
+}
+
+@Article{ gurev2011,
+ Title = {Models of cardiac electromechanics based on individual
+ hearts imaging data},
+ Author = {Gurev, Viatcheslav and Lee, Ted and Constantino, Jason and
+ Arevalo, Hermenegild and Trayanova, Natalia A},
+ Journal = {Biomechanics and modeling in mechanobiology},
+ Volume = {10},
+ Number = {3},
+ Pages = {295--306},
+ Year = {2011},
+ Publisher = {Springer}
+}
+
+@Book{ gurtin-81,
+ Address = {New York},
+ Author = {Gurtin, M.E.},
+ Publisher = {Academic Press Inc.},
+ Series = {Mathematics in Science and Engineering},
+ Title = {An introduction to continuum mechanics},
+ Volume = {158},
+ Year = {1981}
+}
+
+###Book{ gurtin-81,
+ Address = {New York},
+ Author = {Gurtin, M.E.},
+ Publisher = {Academic Press Inc.},
+ Series = {Mathematics in Science and Engineering},
+ Title = {An introduction to continuum mechanics},
+ Volume = {158},
+ Year = {1981}
+}
+
+@Article{ ha2019mrm,
+ Title = {4D Flow MRI quantification of blood flow patterns,
+ turbulence and pressure drop in normal and stenotic
+ prosthetic heart valves},
+ Author = {Ha, Hojin and Kvitting, John-Peder Escobar and Dyverfeldt,
+ Petter and Ebbers, Tino},
+ Journal = {Magnetic resonance imaging},
+ Volume = {55},
+ Pages = {118--127},
+ Year = {2019},
+ Publisher = {Elsevier}
+}
+
+@Article{ ha_turbulent_2016,
+ Title = {Turbulent {{Kinetic Energy Measurement Using Phase
+ Contrast MRI}} for {{Estimating}} the {{Post}}-{{Stenotic
+ Pressure Drop}}: {{In Vitro Validation}} and {{Clinical
+ Application}}},
+ Volume = {11},
+ ISSN = {1932-6203},
+ URL = {http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0151540},
+ DOI = {10.1371/journal.pone.0151540},
+ ShortTitle = {Turbulent {{Kinetic Energy Measurement Using Phase
+ Contrast MRI}} for {{Estimating}} the {{Post}}-{{Stenotic
+ Pressure Drop}}},
+ Abstract = {Background Although the measurement of turbulence kinetic
+ energy (TKE) by using magnetic resonance imaging (MRI) has
+ been introduced as an alternative index for quantifying
+ energy loss through the cardiac valve, experimental
+ verification and clinical application of this parameter are
+ still required. Objectives The goal of this study is to
+ verify MRI measurements of TKE by using a phantom stenosis
+ with particle image velocimetry (PIV) as the reference
+ standard. In addition, the feasibility of measuring TKE
+ with MRI is explored. Methods MRI measurements of TKE
+ through a phantom stenosis was performed by using clinical
+ 3T MRI scanner. The MRI measurements were verified
+ experimentally by using PIV as the reference standard. In
+ vivo application of MRI-driven TKE was explored in seven
+ patients with aortic valve disease and one healthy
+ volunteer. Transvalvular gradients measured by MRI and
+ echocardiography were compared. Results MRI and PIV
+ measurements of TKE are consistent for turbulent flow
+ (0.666 {$<$} R2 {$<$} 0.738) with a mean difference of
+ â11.13 J/m3 (SD = 4.34 J/m3). Results of MRI and PIV
+ measurements differ by 2.76 ± 0.82 cm/s (velocity) and
+ â11.13 ± 4.34 J/m3 (TKE) for turbulent flow (Re {$>$}
+ 400). The turbulence pressure drop correlates strongly with
+ total TKE (R2 = 0.986). However, in vivo measurements of
+ TKE are not consistent with the transvalvular pressure
+ gradient estimated by echocardiography. Conclusions These
+ results suggest that TKE measurement via MRI may provide a
+ potential benefit as an energy-loss index to characterize
+ blood flow through the aortic valve. However, further
+ clinical studies are necessary to reach definitive
+ conclusions regarding this technique.},
+ Number = {3},
+ JournalTitle = {PLOS ONE},
+ ShortJournal = {PLOS ONE},
+ URLDate = {2017-10-12},
+ Year = {2016-03-15},
+ Pages = {e0151540},
+ Author = {Ha, Hojin and Kim, Guk Bae and Kweon, Jihoon and Huh,
+ Hyung Kyu and Lee, Sang Joon and Koo, Hyun Jung and Kang,
+ Joon-Won and Lim, Tae-Hwan and Kim, Dae-Hee and Kim,
+ Young-Hak and Kim, Namkug and Yang, Dong Hyun}
+}
+
+@Article{ ha_validation_2019,
+ Title = {Validation of pressure drop assessment using 4D flow
+ MRI-based turbulence production in various shapes of aortic
+ stenoses},
+ Author = {Ha, Hojin and Kvitting, John-Peder and Dyverfeldt, Petter
+ and Ebbers, Tino},
+ Journal = {Magnetic resonance in medicine},
+ Volume = {81},
+ Number = {2},
+ Pages = {893--906},
+ Year = {2019},
+ Publisher = {Wiley Online Library}
+}
+
+@Book{ haacke1999magnetic,
+ Title = {Magnetic resonance imaging: physical principles and
+ sequence design},
+ Author = {Haacke, E Mark and Brown, Robert W and Thompson, Michael R
+ and Venkatesan, Ramesh and others},
+ Volume = {82},
+ Year = {1999},
+ Publisher = {Wiley-Liss New York:}
+}
+
+###Book{ haacke1999magnetic,
+ Title = {Magnetic resonance imaging: physical principles and
+ sequence design},
+ Author = {Haacke, E Mark and Brown, Robert W and Thompson, Michael R
+ and Venkatesan, Ramesh and others},
+ Volume = {82},
+ Year = {1999},
+ Publisher = {Wiley-Liss New York:}
+}
+
+@Article{ hahn1950physrev,
+ Title = {Spin Echoes},
+ Author = {Hahn, E. L.},
+ Journal = {Physical Review},
+ Year = {1950},
+ Number = {4},
+ Pages = {580--594},
+ Volume = {80},
+ Abstract = {Intense radiofrequency power in the form of pulses is
+ applied to an ensemble of spins in a liquid placed in a
+ large static magnetic field H0. The frequency of the pulsed
+ r-f power satisfies the condition for nuclear magnetic
+ resonance, and the pulses last for times which are short
+ compared with the time in which the nutating macroscopic
+ magnetic moment of the entire spin ensemble can decay.
+ After removal of the pulses a non-equilibrium configuration
+ of isochromatic macroscopic moments remains in which the
+ moment vectors precess freely. Each moment vector has a
+ magnitude at a given precession frequency which is
+ determined by the distribution of Larmor frequencies
+ imposed upon the ensemble by inhomogeneities in H0. At
+ times determined by pulse sequences applied in the past the
+ constructive interference of these moment vectors gives
+ rise to observable spontaneous nuclear induction signals.
+ The properties and underlying principles of these spin echo
+ signals are discussed with use of the Bloch theory.
+ Relaxation times are measured directly and accurately from
+ the measurement of echo amplitudes. An analysis includes
+ the effect on relaxation measurements of the self-diffusion
+ of liquid molecules which contain resonant nuclei.
+ Preliminary studies are made of several effects associated
+ with spin echoes, including the observed shifts in magnetic
+ resonance frequency of spins due to magnetic shielding of
+ nuclei contained in molecules.},
+ DOI = {10.1103/PhysRev.80.580},
+ owner = {david},
+ timestamp = {2015-05-19 16:44:19},
+ URL = {http://link.aps.org/doi/10.1103/PhysRev.80.580},
+ URLDate = {2015-05-19}
+}
+
+@Article{ haj2012aorticvalve3d,
+ Title = {A general three-dimensional parametric geometry of the
+ native aortic valve and root for biomechanical modeling},
+ Author = {Haj-Ali, R. and Marom, G. and Zekry, S. and Rosenfeld, M.
+ and Raanani, E.},
+ Journal = {Journal of biomechanics},
+ Volume = {45},
+ Number = {14},
+ Pages = {2392--2397},
+ Year = {2012},
+ Publisher = {Elsevier}
+}
+
+@Article{ hales2012pbmb,
+ Title = {Histo-anatomical structure of the living isolated rat
+ heart in two contraction states assessed by diffusion
+ tensor MRI.},
+ Author = {Hales, Patrick W. and Schneider, J{\"{u}}rgen E. and
+ Burton, Rebecca A B. and Wright, Benjamin J. and
+ Bollensdorff, Christian and Kohl, Peter},
+ Journal = {Prog Biophys Mol Biol},
+ Year = {2012},
+ Number = {2-3},
+ Pages = {319--330},
+ Volume = {110},
+ Abstract = {Deformation and wall-thickening of ventricular myocardium
+ are essential for cardiac pump function. However, insight
+ into the histo-anatomical basis for cardiac tissue
+ re-arrangement during contraction is limited. In this
+ report, we describe dynamic changes in regionally
+ prevailing cardiomyocyte (fibre) and myolaminar (sheet)
+ orientations, using Diffusion Tensor Imaging (DTI) of
+ ventricles in the same living heart in two different
+ mechanical states. Hearts, isolated from Sprague-Dawley
+ rats, were Langendorff-perfused and imaged, initially in
+ their slack state during cardioplegic arrest, then during
+ lithium-induced contracture. Regional fibre- and
+ sheet-orientations were derived from DTI-data on a
+ voxel-wise basis. Contraction was accompanied with a
+ decrease in left-handed helical fibres (handedness relative
+ to the baso-apical direction) in basal, equatorial, and
+ apical sub-epicardium (by 14.0\%, 17.3\%, 15.8\%
+ respectively; p < 0.001), and an increase in right-handed
+ helical fibres of the sub-endocardium (by 11.0\%, 12.1\%
+ and 16.1\%, respectively; p < 0.001). Two predominant
+ sheet-populations were observed, with sheet-angles of
+ either positive (?+) or negative (?-) polarity relative to
+ a 'chamber-horizontal plane' (defined as normal to the left
+ ventricular long-axis). In contracture, mean
+ 'intersection'-angle (geometrically quantifiable
+ intersection of sheet-angle projections) between ?+ and ?-
+ sheet-populations increased from 86.2 ± 5.5° (slack) to
+ 108.3 ± 5.4° (p < 0.001). Subsequent high-resolution
+ DTI of fixed myocardium, and histological sectioning,
+ reconfirmed the existence of alternating sheet-plane
+ populations. Our results suggest that myocardial tissue
+ layers in alternating sheet-populations align into a more
+ chamber-horizontal orientation during contraction. This
+ re-arrangement occurs via an accordion-like mechanism that,
+ combined with inter-sheet slippage, can significantly
+ contribute to ventricular deformation, including
+ wall-thickening in a predominantly centripetal direction
+ and baso-apical shortening.},
+ DOI = {10.1016/j.pbiomolbio.2012.07.014},
+ Institution = {Department of Cardiovascular Medicine, University of
+ Oxford, Oxford OX3 7BN, UK. p.hales@ucl.ac.uk},
+ Keywords = {Animals; Diffusion Tensor Imaging; Female; Heart, anatomy
+ /&/ histology; Muscle Contraction; Myocardium, cytology;
+ Perfusion; Rats; Rats, Sprague-Dawley; Tissue Survival},
+ Language = {eng},
+ medline-pst = {ppublish},
+ owner = {stoeckc},
+ pii = {S0079-6107(12)00067-3},
+ pmid = {23043978},
+ timestamp = {2015.07.24},
+ URL = {http://dx.doi.org/10.1016/j.pbiomolbio.2012.07.014}
+}
+
+@Article{ hall1995jacc,
+ Title = {Time course of improvement in left ventricular function,
+ mass and geometry in patients with congestive heart failure
+ treated with beta-adrenergic blockade},
+ Author = {Hall, Shelley A. and Cigarroa, Carlos G. and Marcoux,
+ Lucille and Risser, Richard C. and Grayburn, Paul A. and
+ Eichhorn, Eric J.},
+ Journal = {Journal of the American College of Cardiology},
+ Year = {1995},
+ Number = {5},
+ Pages = {1154-1161},
+ Volume = {25},
+ DOI = {10.1016/0735-1097(94)00543-Y},
+ EPrint = {/data/Journals/JAC/24317/0543Y.pdf},
+ File = {hall95.pdf:hall95.pdf:PDF},
+ timestamp = {2015/09/13},
+ URL = { + http://dx.doi.org/10.1016/0735-1097(94)00543-Y}
+}
+
+@Article{ hall_calculation_1989,
+ langid = {english},
+ Title = {Calculation of Unsteady Flows in Turbomachinery Using the
+ {{linearizedEuler}} Equations},
+ Volume = {27},
+ ISSN = {0001-1452, 1533-385X},
+ URL = {http://arc.aiaa.org/doi/10.2514/3.10178},
+ DOI = {10.2514/3.10178},
+ Number = {6},
+ JournalTitle = {AIAA Journal},
+ URLDate = {2019-08-24},
+ Date = {1989-06},
+ Pages = {777-787},
+ Author = {Hall, Kenneth C. and Crawley, Edward F.}
+}
+
+@Article{ hansbo-05,
+ Author = {Hansbo, P.},
+ Journal = {GAMM-Mitt.},
+ Number = {2},
+ Pages = {183--206},
+ Title = {Nitsche's method for interface problems in computational
+ mechanics},
+ Volume = {28},
+ Year = {2005}
+}
+
+###Article{ hansbo-05,
+ Author = {Hansbo, P.},
+ Journal = {GAMM-Mitt.},
+ Number = {2},
+ Pages = {183--206},
+ Title = {Nitsche's method for interface problems in computational
+ mechanics},
+ Volume = {28},
+ Year = {2005}
+}
+
+@Article{ hansbo-hermansson-thomas-04,
+ Author = {Hansbo, P. and Hermansson, J. and Svedberg, T.},
+ ISSN = {0045-7825},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Number = {39-41},
+ Pages = {4195--4206},
+ Title = {Nitsche's method combined with space-time finite elements
+ for {ALE} fluid-structure interaction problems},
+ Volume = {193},
+ Year = {2004}
+}
+
+###Article{ hansbo-hermansson-thomas-04,
+ Author = {Hansbo, P. and Hermansson, J. and Svedberg, T.},
+ ISSN = {0045-7825},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Number = {39-41},
+ Pages = {4195--4206},
+ Title = {Nitsche's method combined with space-time finite elements
+ for {ALE} fluid-structure interaction problems},
+ Volume = {193},
+ Year = {2004}
+}
+
+@Article{ hansbo05,
+ Author = {Hansbo, P.},
+ Title = {Nitsche's method for interface problems in computational
+ mechanics},
+ Journal = {GAMM-Mitt.},
+ fjournal = {GAMM-Mitteilungen},
+ Volume = {28},
+ Year = {2005},
+ Number = {2},
+ Pages = {183--206},
+ ISSN = {0936-7195},
+ mrclass = {65N30 (74G15 74S30)},
+ mrnumber = {MR2192480 (2006j:65345)},
+ mrreviewer = {Igor Bock}
+}
+
+###Article{ hansbo05,
+ Author = {Hansbo, P.},
+ Title = {Nitsche's method for interface problems in computational
+ mechanics},
+ Journal = {GAMM-Mitt.},
+ fjournal = {GAMM-Mitteilungen},
+ Volume = {28},
+ Year = {2005},
+ Number = {2},
+ Pages = {183--206},
+ ISSN = {0936-7195},
+ mrclass = {65N30 (74G15 74S30)},
+ mrnumber = {MR2192480 (2006j:65345)},
+ mrreviewer = {Igor Bock}
+}
+
+@Article{ hansbohansbo02,
+ Author = "Hansbo, A. and Hansbo, P.",
+ Title = "{An unfitted finite element method, based on Nitsche's
+ method, for elliptic interface problems}",
+ Journal = cma,
+ Volume = "191",
+ Pages = "5537--5552",
+ Year = "2002"
+}
+
+###Article{ hansbohansbo02,
+ Author = "Hansbo, A. and Hansbo, P.",
+ Title = "{An unfitted finite element method, based on Nitsche's
+ method, for elliptic interface problems}",
+ Journal = cma,
+ Volume = "191",
+ Pages = "5537--5552",
+ Year = "2002"
+}
+
+@Article{ hansbohansbo04,
+ Author = "{Hansbo, A. and Hansbo, P.}",
+ Title = "{A finite element method for the simulation of strong and
+ weak discountinuities in solid mechanics}",
+ Journal = cma,
+ Volume = "193",
+ Pages = "3523--3540",
+ Year = "2004"
+}
+
+###Article{ hansbohansbo04,
+ Author = "{Hansbo, A. and Hansbo, P.}",
+ Title = "{A finite element method for the simulation of strong and
+ weak discountinuities in solid mechanics}",
+ Journal = cma,
+ Volume = "193",
+ Pages = "3523--3540",
+ Year = "2004"
+}
+
+@Article{ happel-59,
+ Author = {Happel, J.},
+ Journal = {AIChE J.},
+ Pages = {174-177},
+ Title = {Viscous flow relative to arrays of cylinders},
+ Volume = {5},
+ Year = {1959}
+}
+
+###Article{ happel-59,
+ Author = {Happel, J.},
+ Journal = {AIChE J.},
+ Pages = {174-177},
+ Title = {Viscous flow relative to arrays of cylinders},
+ Volume = {5},
+ Year = {1959}
+}
+
+@Article{ haraldsson2018ppeturb,
+ Title = {Assessment of Reynolds stress components and turbulent
+ pressure loss using 4D flow MRI with extended motion
+ encoding},
+ Author = {Haraldsson, Henrik and Kefayati, Sarah and Ahn, Sinyeob
+ and Dyverfeldt, Petter and Lantz, Jonas and Karlsson, Matts
+ and Laub, Gerhard and Ebbers, Tino and Saloner, David},
+ Journal = {Magnetic resonance in medicine},
+ Volume = {79},
+ Number = {4},
+ Pages = {1962--1971},
+ Year = {2018},
+ Publisher = {Wiley Online Library}
+}
+
+@Article{ hardman_comparison_2013,
+ Title = {Comparison of Patient-Specific Inlet Boundary Conditions
+ in the Numerical Modelling of Blood Flow in Abdominal
+ Aortic Aneurysm Disease},
+ Volume = {29},
+ Number = {2},
+ JournalTitle = {International Journal for Numerical Methods in Biomedical
+ Engineering},
+ Year = {2013},
+ Pages = {165--178},
+ Author = {Hardman, David and Semple, Scott I. and Richards, Jennifer
+ MJ and Hoskins, Peter R.}
+}
+
+@Article{ harmer2013in,
+ Title = {In vivo myofibre architecture in the systemic right
+ ventricle.},
+ Author = {Harmer, Jack and Pushparajah, Kuberan and Toussaint,
+ Nicolas and Stoeck, Christian T. and Chan, Rachel and
+ Atkinson, David and Razavi, Reza and Kozerke, Sebastian},
+ Journal = {European Heart Journal},
+ Year = {2013},
+ Month = {Dec},
+ Number = {47},
+ Pages = {3640},
+ Volume = {34},
+ Institution = {Division of Imaging Sciences and Biomedical Engineering,
+ King's College London, London, UK.},
+ Keywords = {Adult; Diffusion Magnetic Resonance Imaging; Humans;
+ Magnetic Resonance Angiography; Medical Illustration;
+ Transposition of Great Vessels, pathology/surgery;
+ Ventricular Dysfunction, Right, pathology},
+ Language = {eng},
+ medline-pst = {ppublish},
+ owner = {andreas},
+ pii = {eht442},
+ pmid = {24142348},
+ timestamp = {2015.06.17}
+}
+
+@Article{ heil-04,
+ Author = {Heil, M.},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Number = {1-2},
+ Pages = {1--23},
+ Title = {An efficient solver for the fully coupled solution of
+ large-displacement fluid-structure interaction problems},
+ Volume = {193},
+ Year = {2004}
+}
+
+###Article{ heil-04,
+ Author = {Heil, M.},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Number = {1-2},
+ Pages = {1--23},
+ Title = {An efficient solver for the fully coupled solution of
+ large-displacement fluid-structure interaction problems},
+ Volume = {193},
+ Year = {2004}
+}
+
+@Article{ heinen_vivo_2017,
+ langid = {english},
+ Title = {In Vivo Validation of Patient-Specific Pressure Gradient
+ Calculations for Iliac Artery Stenosis Severity
+ Assessment},
+ Volume = {6},
+ ISSN = {2047-9980},
+ URL = {https://research.tue.nl/en/publications/in-vivo-validation-of-patient-specific-pressure-gradient-calculat},
+ DOI = {10.1161/JAHA.117.007328},
+ Number = {12},
+ JournalTitle = {Journal of the American Heart Association},
+ URLDate = {2019-02-28},
+ Year = {2017-12},
+ Pages = {e007328},
+ Author = {Heinen, Stefan G. H. and van den Heuvel, Daniel A. F. and
+ Huberts, Wouter and de Boer, Sanne W. and van de Vosse,
+ Frans N. and Delhaas, Tammo and de Vries, Jean-Paul P. M.},
+ EPrintType = {pmid},
+ EPrint = {29275367}
+}
+
+@Article{ helm-etal-05a,
+ Author = {Helm, P. and Beg, M. F. and Miller, M. I. and Winslow, R.
+ L.},
+ Title = {Measuring and Mapping Cardiac Fiber and Laminar
+ Architecture Using Diffusion Tensor {MR} Imaging},
+ Journal = {Annals of the New York Academy of Sciences},
+ Volume = {1047},
+ Number = {1},
+ Publisher = {Blackwell Publishing Ltd},
+ ISSN = {1749-6632},
+ DOI = {10.1196/annals.1341.026},
+ Pages = {296--307},
+ Keywords = {computational modeling, fiber orientation, MRI, sheet
+ orientation, ventricular anatomy},
+ Year = {2005}
+}
+
+@Article{ helm-etal-05b,
+ Author = {Helm, P. and Tseng, H.-J. and Younes, L. and McVeigh, E.
+ R. and Winslow, R. L.},
+ Title = {Ex vivo {3D} diffusion tensor imaging and quantification
+ of cardiac laminar structure},
+ Journal = {Magnetic Resonance in Medicine},
+ Volume = {54},
+ Number = {4},
+ Publisher = {Wiley Subscription Services, Inc., A Wiley Company},
+ ISSN = {1522-2594},
+ DOI = {10.1002/mrm.20622},
+ Pages = {850--859},
+ Keywords = {diffusion tensor MRI, myocardial microstructure,
+ anisotropic diffusion, myofiber laminar sheets, cardiac},
+ Year = {2005}
+}
+
+@Article{ helm2005mrm,
+ Title = {Ex vivo 3D diffusion tensor imaging and quantification of
+ cardiac laminar structure.},
+ Author = {Helm, Patrick A. and Tseng, Hsiang-Jer and Younes, Laurent
+ and McVeigh, Elliot R. and Winslow, Raimond L.},
+ Journal = {Magn Reson Med},
+ Year = {2005},
+ Month = {Oct},
+ Number = {4},
+ Pages = {850--859},
+ Volume = {54},
+ Abstract = {A three-dimensional (3D) diffusion-weighted imaging (DWI)
+ method for measuring cardiac fiber structure at high
+ spatial resolution is presented. The method was applied to
+ the ex vivo reconstruction of the fiber architecture of
+ seven canine hearts. A novel hypothesis-testing method was
+ developed and used to show that distinct populations of
+ secondary and tertiary eigenvalues may be distinguished at
+ reasonable confidence levels (P < or = 0.01) within the
+ canine ventricle. Fiber inclination and sheet angles are
+ reported as a function of transmural depth through the
+ anterior, lateral, and posterior left ventricle (LV) free
+ wall. Within anisotropic regions, two consistent and
+ dominant orientations were identified, supporting published
+ results from histological studies and providing strong
+ evidence that the tertiary eigenvector of the diffusion
+ tensor (DT) defines the sheet normal.},
+ DOI = {10.1002/mrm.20622},
+ Institution = {Center for Cardiovascular Bioinformatics and Modeling,
+ Johns Hopkins University, Baltimore, MD 21218, USA.
+ phelm@bme.jhu.edu},
+ Keywords = {Algorithms; Animals; Diffusion Magnetic Resonance Imaging,
+ methods; Dogs; Heart Ventricles, cytology; Image
+ Enhancement, methods; Image Interpretation,
+ Computer-Assisted, methods; Imaging, Three-Dimensional,
+ methods; In Vitro Techniques; Information Storage and
+ Retrieval, methods; Male; Pattern Recognition, Automated,
+ methods; Reproducibility of Results; Sensitivity and
+ Specificity},
+ Language = {eng},
+ medline-pst = {ppublish},
+ owner = {stoeckc},
+ pmid = {16149057},
+ timestamp = {2015.07.24},
+ URL = {http://dx.doi.org/10.1002/mrm.20622}
+}
+
+@Article{ helm2006evidence,
+ Title = {Evidence of structural remodeling in the dyssynchronous
+ failing heart},
+ Author = {Helm, Patrick A and Younes, Laurent and Beg, Mirza F and
+ Ennis, Daniel B and Leclercq, Christophe and Faris, Owen P
+ and McVeigh, Elliot and Kass, David and Miller, Michael I
+ and Winslow, Raimond L},
+ Journal = {Circulation Research},
+ Volume = {98},
+ Number = {1},
+ Pages = {125--132},
+ Year = {2006},
+ Publisher = {Am Heart Assoc}
+}
+
+@Article{ henzler2010ejr,
+ Title = {Diffusion and perfusion {MRI} of the lung and
+ mediastinum},
+ Author = {Henzler, Thomas and Schmid-Bindert, Gerald and Schoenberg,
+ Stefan O and Fink, Christian},
+ Journal = {European journal of radiology},
+ Year = {2010},
+ Number = {3},
+ Pages = {329--336},
+ Volume = {76},
+ Publisher = {Elsevier}
+}
+
+@Article{ herment2000mrm,
+ Title = {Improved estimation of velocity and flow rate using
+ regularized three-point phase-contrast velocimetry.},
+ Author = {Herment, A. and Mousseaux, E. and Jolivet, O. and
+ DeCesare, A. and Frouin, F. and Todd-Pokropek, A. and
+ Bittoun, J.},
+ Journal = {Magn Reson Med},
+ Year = {2000},
+ Month = {Jul},
+ Number = {1},
+ Pages = {122--128},
+ Volume = {44},
+ Abstract = {We improved the three-point phase-contrast method by
+ regularization of MR velocity data after acquisition of a
+ low velocity-to-noise ratio (VNR) velocity image and a high
+ VNR aliased velocity image. The phase unwrapping algorithm
+ is based on the assumed correlation of the velocity of
+ adjacent flow voxels on the low VNR and the unaliased high
+ VNR images. We used Fourier encoding with eight
+ velocity-encoding gradient steps to obtain reference
+ velocity images of the aorta from five subjects (274
+ images) and compared them with the phase-contrast and
+ three-point phase-contrast images with and without
+ regularization. The VNR of the regularized velocity image
+ was improved by 9.1 dB and the VNR of the three-point
+ phase-contrast velocity image was improved by 0.7 dB with
+ respect to the low first moment velocity image.
+ Corresponding improvements of 9 dB and 3.7 dB were obtained
+ for the estimations of instantaneous flow rate. Magn Reson
+ Med 44:122-128, 2000.},
+ Institution = {INSERM U.494 CHU Pitié, Paris, France.
+ herment@imed.jussieu.fr},
+ Keywords = {Adult; Algorithms; Aorta, physiology; Blood Flow Velocity,
+ physiology; Fourier Analysis; Hemorheology; Humans; Image
+ Processing, Computer-Assisted; Least-Squares Analysis;
+ Linear Models; Magnetic Resonance Imaging, methods; Male;
+ Middle Aged; Phantoms, Imaging},
+ Language = {eng},
+ medline-pst = {ppublish},
+ owner = {stoeckc},
+ pii = {3.0.CO;2-C},
+ pmid = {10893530},
+ timestamp = {2015.07.24}
+}
+
+@Unpublished{ heyden2015submitted,
+ Title = {Material modeling of cardiac valve tissue: Experiments,
+ constitutive analysis and numerical investigation},
+ Author = {Stefanie Heyden and Andreas Nagler and Cristobal Bertoglio
+ and Jonas Biehler and Michael W. Gee and Wolfgang A. Wall
+ and Michael Ortiz},
+ Note = {submitted for publication},
+ Year = {2015},
+ File = {heyden15.pdf:heyden15.pdf:PDF},
+ owner = {pfaller},
+ timestamp = {2015/09/23}
+}
+
+@Article{ heys-etal-10,
+ Title = {Weighted least-squares finite elements based on particle
+ imaging velocimetry data},
+ Author = {Heys, J.J. and Manteuffel, T.A. and McCormick, S.F. and
+ Milano, M. and Westerdale, J. and Belohlavek, M.},
+ Journal = {Journal of Computational Physics},
+ Volume = {229},
+ Number = {1},
+ Pages = {107--118},
+ Year = {2010},
+ Publisher = {Elsevier}
+}
+
+###Article{ heys-etal-10,
+ Title = {Weighted least-squares finite elements based on particle
+ imaging velocimetry data},
+ Author = {Heys, J.J. and Manteuffel, T.A. and McCormick, S.F. and
+ Milano, M. and Westerdale, J. and Belohlavek, M.},
+ Journal = {Journal of Computational Physics},
+ Volume = {229},
+ Number = {1},
+ Pages = {107--118},
+ Year = {2010},
+ Publisher = {Elsevier}
+}
+
+@Article{ heys2010weighted,
+ Title = {Weighted least-squares finite elements based on particle
+ imaging velocimetry data},
+ Author = {Heys, Jeffrey J and Manteuffel, Thomas A and McCormick,
+ Stephen F and Milano, M and Westerdale, John and
+ Belohlavek, Marek},
+ Journal = {Journal of Computational Physics},
+ Volume = {229},
+ Number = {1},
+ Pages = {107--118},
+ Year = {2010},
+ Publisher = {Elsevier}
+}
+
+@Article{ heys_weighted_2010,
+ Title = {Weighted Least-Squares Finite Elements Based on Particle
+ Imaging Velocimetry Data},
+ Volume = {229},
+ Number = {1},
+ JournalTitle = {Journal of Computational Physics},
+ Year = {2010},
+ Pages = {107--118},
+ Author = {Heys, Jeffrey J. and Manteuffel, Thomas A. and McCormick,
+ Stephen F. and Milano, M. and Westerdale, John and
+ Belohlavek, Marek}
+}
+
+@Article{ heywood-70,
+ Author = {Heywood, J.G.},
+ Journal = {Arch. Rat. Mech. Anal.},
+ Pages = {48-60},
+ Title = {On stationary solutions of the {Navier-Stokes} equations
+ as limits of nonstationary solutions},
+ Volume = {37},
+ Year = {1970}
+}
+
+###Article{ heywood-70,
+ Author = {Heywood, J.G.},
+ Journal = {Arch. Rat. Mech. Anal.},
+ Pages = {48-60},
+ Title = {On stationary solutions of the {Navier-Stokes} equations
+ as limits of nonstationary solutions},
+ Volume = {37},
+ Year = {1970}
+}
+
+@Article{ heywood-80,
+ Author = {Heywood, J.G.},
+ Journal = {Indiana Univ. Math. J.},
+ Number = {5},
+ Pages = {639-681},
+ Title = {The {Navier-Stokes} equations~: on the existence,
+ regularity and decay of solutions},
+ Volume = {29},
+ Year = {1980}
+}
+
+###Article{ heywood-80,
+ Author = {Heywood, J.G.},
+ Journal = {Indiana Univ. Math. J.},
+ Number = {5},
+ Pages = {639-681},
+ Title = {The {Navier-Stokes} equations~: on the existence,
+ regularity and decay of solutions},
+ Volume = {29},
+ Year = {1980}
+}
+
+@Article{ heywood-rannacher-turek-96,
+ Author = {J.G. Heywood and R. Rannacher and S. Turek},
+ Journal = {International Journal for Numerical Methods in Fluids},
+ Pages = {325--352},
+ Title = {Artificial Boundaries and Flux and Pressure Conditions for
+ the Incompressible {N}avier--{S}tokes Equations},
+ Volume = {22},
+ Year = {1996}
+}
+
+###Article{ heywood-rannacher-turek-96,
+ Author = {J.G. Heywood and R. Rannacher and S. Turek},
+ Journal = {International Journal for Numerical Methods in Fluids},
+ Pages = {325--352},
+ Title = {Artificial Boundaries and Flux and Pressure Conditions for
+ the Incompressible {N}avier--{S}tokes Equations},
+ Volume = {22},
+ Year = {1996}
+}
+
+@Article{ heywood_artificial_1996,
+ Title = {Artificial Boundaries and Flux and Pressure Conditions for
+ the Incompressible Navier-Stokes Equations},
+ Volume = {22},
+ Number = {5},
+ JournalTitle = {International Journal for Numerical Methods in Fluids},
+ Year = {1996},
+ Pages = {325--352},
+ Author = {Heywood, John G. and Rannacher, Rolf and Turek, Stefan}
+}
+
+@Article{ hfb86,
+ Author = {Hughes, T.J.R. and Franca, L.P. and Balestra, M.},
+ Title = {A new finite element formulation for computational fluid
+ dynamics. {V}. {C}ircumventing the {B}abu\v ska-{B}rezzi
+ condition: a stable {P}etrov-{G}alerkin formulation of the
+ {S}tokes problem accommodating equal-order interpolations},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Volume = {59},
+ Year = {1986},
+ Number = {1},
+ Pages = {85--99}
+}
+
+###Article{ hfb86,
+ Author = {Hughes, T.J.R. and Franca, L.P. and Balestra, M.},
+ Title = {A new finite element formulation for computational fluid
+ dynamics. {V}. {C}ircumventing the {B}abu\v ska-{B}rezzi
+ condition: a stable {P}etrov-{G}alerkin formulation of the
+ {S}tokes problem accommodating equal-order interpolations},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Volume = {59},
+ Year = {1986},
+ Number = {1},
+ Pages = {85--99}
+}
+
+@Article{ hh03,
+ Author = {Hansbo, P. and Hermansson, J.},
+ Journal = {Computational Mechanics},
+ Number = {1--2},
+ Pages = {134--139},
+ Title = {Nitsche's method for coupling non-matching meshes in
+ fluid-structure vibration problems},
+ Volume = {32},
+ Year = {2003}
+}
+
+###Article{ hh03,
+ Author = {Hansbo, P. and Hermansson, J.},
+ Journal = {Computational Mechanics},
+ Number = {1--2},
+ Pages = {134--139},
+ Title = {Nitsche's method for coupling non-matching meshes in
+ fluid-structure vibration problems},
+ Volume = {32},
+ Year = {2003}
+}
+
+@Article{ hhs04,
+ Author = {Hansbo, P. and Hermansson, J. and Svedberg, T.},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Pages = {4195--4206},
+ Title = {Nitsche's method combined with space-time finite elements
+ for {A}{L}{E} fluid-structure interaction problems},
+ Volume = {193},
+ Year = {2004}
+}
+
+###Article{ hhs04,
+ Author = {Hansbo, P. and Hermansson, J. and Svedberg, T.},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Pages = {4195--4206},
+ Title = {Nitsche's method combined with space-time finite elements
+ for {A}{L}{E} fluid-structure interaction problems},
+ Volume = {193},
+ Year = {2004}
+}
+
+@Article{ higashitani-iimura-98,
+ Annote = {blood, aggregation, shear flow, elongational flow},
+ Author = {Higashitani, K. and Ilmua K.},
+ code = {cel3},
+ Journal = {J. Colloid Interface Sci.},
+ Pages = {320-327},
+ Title = {Two dimensional simulation of the breakup process of
+ aggregates in shear and elongational flows},
+ Volume = {204},
+ Year = {1998}
+}
+
+###Article{ higashitani-iimura-98,
+ Annote = {blood, aggregation, shear flow, elongational flow},
+ Author = {Higashitani, K. and Ilmua K.},
+ code = {cel3},
+ Journal = {J. Colloid Interface Sci.},
+ Pages = {320-327},
+ Title = {Two dimensional simulation of the breakup process of
+ aggregates in shear and elongational flows},
+ Volume = {204},
+ Year = {1998}
+}
+
+@Article{ hilhorst-van-der-hout-peletier-00,
+ Author = {Hilhorst, D. and van der Hout, R. and Peletier, L. A.},
+ code = {por23},
+ Journal = {Nonlinear Anal.},
+ Number = {5-6, Ser. A: Theory Meth. Appl.},
+ Pages = {803--823},
+ Title = {Nonlinear diffusion in the presence of fast reaction},
+ Volume = {41},
+ Year = {2000}
+}
+
+###Article{ hilhorst-van-der-hout-peletier-00,
+ Author = {Hilhorst, D. and van der Hout, R. and Peletier, L. A.},
+ code = {por23},
+ Journal = {Nonlinear Anal.},
+ Number = {5-6, Ser. A: Theory Meth. Appl.},
+ Pages = {803--823},
+ Title = {Nonlinear diffusion in the presence of fast reaction},
+ Volume = {41},
+ Year = {2000}
+}
+
+@Article{ hilhorst-van-der-hout-peletier-96,
+ Author = {Hilhorst, D. and van der Hout, R. and Peletier, L. A.},
+ code = {por21},
+ Journal = {J. Math. Anal. Appl.},
+ Number = {2},
+ Pages = {349--373},
+ Title = {The fast reaction limit for a reaction-diffusion system},
+ Volume = {199},
+ Year = {1996}
+}
+
+###Article{ hilhorst-van-der-hout-peletier-96,
+ Author = {Hilhorst, D. and van der Hout, R. and Peletier, L. A.},
+ code = {por21},
+ Journal = {J. Math. Anal. Appl.},
+ Number = {2},
+ Pages = {349--373},
+ Title = {The fast reaction limit for a reaction-diffusion system},
+ Volume = {199},
+ Year = {1996}
+}
+
+@Article{ hilhorst-van-der-hout-peletier-97,
+ Author = {Hilhorst, D. and van der Hout, R. and Peletier, L. A.},
+ code = {por22},
+ fjournal = {The University of Tokyo. Journal of Mathematical
+ Sciences},
+ Journal = {J. Math. Sci. Univ. Tokyo},
+ Number = {3},
+ Pages = {469--517},
+ Title = {Diffusion in the presence of fast reaction: the case of a
+ general monotone reaction term},
+ Volume = {4},
+ Year = {1997}
+}
+
+###Article{ hilhorst-van-der-hout-peletier-97,
+ Author = {Hilhorst, D. and van der Hout, R. and Peletier, L. A.},
+ code = {por22},
+ fjournal = {The University of Tokyo. Journal of Mathematical
+ Sciences},
+ Journal = {J. Math. Sci. Univ. Tokyo},
+ Number = {3},
+ Pages = {469--517},
+ Title = {Diffusion in the presence of fast reaction: the case of a
+ general monotone reaction term},
+ Volume = {4},
+ Year = {1997}
+}
+
+@Article{ hiratzka_2010_2010,
+ Title = {2010
+ {{ACCF}}/{{AHA}}/{{AATS}}/{{ACR}}/{{ASA}}/{{SCA}}/{{SCAI}}/{{SIR}}/
+ {{STS}}/{{SVM}} Guidelines for the Diagnosis and Management
+ of Patients with Thoracic Aortic Disease},
+ Volume = {55},
+ Number = {14},
+ JournalTitle = {Journal of the American College of Cardiology},
+ Year = {2010},
+ Pages = {e27--e129},
+ Author = {Hiratzka, Loren F. and Bakris, George L. and Beckman,
+ Joshua A. and Bersin, Robert M. and Carr, Vincent F. and
+ Casey, Donald E. and Eagle, Kim A. and Hermann, Luke K. and
+ Isselbacher, Eric M. and Kazerooni, Ella A.}
+}
+
+@Article{ hirt-amsden-cook-74,
+ Author = {Hirt, C.W. and Amsden, A.A. and Cook, J.L.},
+ Journal = { J. Comput. Phys.},
+ Number = {3},
+ Pages = {227--253},
+ Title = {An arbitrary Lagrangian-Eulerian computing method for all
+ flow speeds},
+ Volume = {14},
+ Year = {1974}
+}
+
+###Article{ hirt-amsden-cook-74,
+ Author = {Hirt, C.W. and Amsden, A.A. and Cook, J.L.},
+ Journal = { J. Comput. Phys.},
+ Number = {3},
+ Pages = {227--253},
+ Title = {An arbitrary Lagrangian-Eulerian computing method for all
+ flow speeds},
+ Volume = {14},
+ Year = {1974}
+}
+
+@PhdThesis{ ho-89,
+ Author = {Ho, L.W.},
+ code = {mob8},
+ School = {Massachussets Institute of Technology},
+ Title = {A legendre spectral element method for simulation of
+ incompressible unsteady viscous free-surface flows},
+ Year = {1989}
+}
+
+###PhdThesis{ ho-89,
+ Author = {Ho, L.W.},
+ code = {mob8},
+ School = {Massachussets Institute of Technology},
+ Title = {A legendre spectral element method for simulation of
+ incompressible unsteady viscous free-surface flows},
+ Year = {1989}
+}
+
+@Article{ ho2006,
+ Title = {Anatomy, echocardiography, and normal right ventricular
+ dimensions},
+ Author = {Ho, S.Y. and Nihoyannopoulos, P.},
+ Journal = {Heart},
+ Volume = {92},
+ Number = {suppl 1},
+ Pages = {i2--i13},
+ Year = {2006},
+ Publisher = {BMJ Publishing Group Ltd and British Cardiovascular
+ Society}
+}
+
+@Article{ holmes-79,
+ Author = {Holmes, M. H.},
+ Journal = {J. Differential Equations},
+ Number = {3},
+ Pages = {388--397},
+ Title = {A spectral problem in hydroelasticity},
+ Volume = {32},
+ Year = {1979}
+}
+
+###Article{ holmes-79,
+ Author = {Holmes, M. H.},
+ Journal = {J. Differential Equations},
+ Number = {3},
+ Pages = {388--397},
+ Title = {A spectral problem in hydroelasticity},
+ Volume = {32},
+ Year = {1979}
+}
+
+@Article{ holmes2005arbe,
+ Title = {Structure and mechanics of healing myocardial infarcts},
+ Author = {Holmes, Jeffrey W and Borg, Thomas K and Covell, James W},
+ Journal = {Annual Review of Biomedical Engineering},
+ Year = {2005},
+ Pages = {223--253},
+ Volume = {7},
+ File = {:holmes05.pdf:PDF},
+ Publisher = {Annual Reviews},
+ timestamp = {2014/11/25}
+}
+
+@Article{ holton_evaluation_2005,
+ Title = {Evaluation of In-Stent Stenosis by Magnetic Resonance
+ Phase-Velocity Mapping in Nickel-Titanium Stents},
+ Author = {Holton, Andrea D. and Walsh, Edward G. and Brott, Brigitta
+ C. and Venugopalan, Ramakrishna and Hershey, Bradley and
+ Ito, Yasushi and Shih, Alan and Koomullil, Roy and
+ Anayiotos, Andreas S.},
+ Year = {2005},
+ Volume = {22},
+ Pages = {248--257},
+ Journal = {Journal of Magnetic Resonance Imaging},
+ Number = {2}
+}
+
+@Article{ holzapfel-odgen-09,
+ Volume = {14},
+ Title = {On planar biaxial tests for anisotropic nonlinearly
+ elastic solids: a continuum mechanical framework },
+ Author = {Holzapfel, G.A. and Ogden, R.W.},
+ Year = {2009},
+ Pages = {474--489},
+ Journal = {Mathematics and Mechanics of Solids},
+ Abstract = {The mechanical testing of anisotropic nonlinearly elastic
+ solids is a topic of considerable and increasing interest.
+ The results of such testing are important, in particular,
+ for the characterization of the material properties and the
+ development of constitutive laws that can be used for
+ predictive purposes. However, the literature on this topic
+ in the context of soft tissue biomechanics, in particular,
+ includes some papers that are misleading since they contain
+ errors and false statements. Claims that planar biaxial
+ testing can fully characterize the three-dimensional
+ anisotropic elastic properties of soft tissues are
+ incorrect. There is therefore a need to clarify the extent
+ to which biaxial testing can be used for determining the
+ elastic properties of these materials. In this paper this
+ is explained on the basis of the equations of finite
+ deformation transversely isotropic elasticity, and general
+ planar anisotropic elasticity. It is shown that it is
+ theoretically impossible to fully characterize the
+ properties of anisotropic elastic materials using such
+ tests unless some assumption is made that enables a
+ suitable subclass of models to be preselected. Moreover, it
+ is shown that certain assumptions underlying the analysis
+ of planar biaxial tests are inconsistent with the classical
+ linear theory of orthotropic elasticity. Possible sets of
+ independent tests required for full material
+ characterization are then enumerated.}
+}
+
+###Article{ holzapfel-odgen-09,
+ Volume = {14},
+ Title = {On planar biaxial tests for anisotropic nonlinearly
+ elastic solids: a continuum mechanical framework },
+ Author = {Holzapfel, G.A. and Ogden, R.W.},
+ Year = {2009},
+ Pages = {474--489},
+ Journal = {Mathematics and Mechanics of Solids},
+ URL = {http://eprints.gla.ac.uk/25269/},
+ Abstract = {The mechanical testing of anisotropic nonlinearly elastic
+ solids is a topic of considerable and increasing interest.
+ The results of such testing are important, in particular,
+ for the characterization of the material properties and the
+ development of constitutive laws that can be used for
+ predictive purposes. However, the literature on this topic
+ in the context of soft tissue biomechanics, in particular,
+ includes some papers that are misleading since they contain
+ errors and false statements. Claims that planar biaxial
+ testing can fully characterize the three-dimensional
+ anisotropic elastic properties of soft tissues are
+ incorrect. There is therefore a need to clarify the extent
+ to which biaxial testing can be used for determining the
+ elastic properties of these materials. In this paper this
+ is explained on the basis of the equations of finite
+ deformation transversely isotropic elasticity, and general
+ planar anisotropic elasticity. It is shown that it is
+ theoretically impossible to fully characterize the
+ properties of anisotropic elastic materials using such
+ tests unless some assumption is made that enables a
+ suitable subclass of models to be preselected. Moreover, it
+ is shown that certain assumptions underlying the analysis
+ of planar biaxial tests are inconsistent with the classical
+ linear theory of orthotropic elasticity. Possible sets of
+ independent tests required for full material
+ characterization are then enumerated.}
+}
+
+@Article{ holzapfel-odgen-review2010,
+ Author = {Holzapfel, G.A. and Ogden, R.W.},
+ Title = {Constitutive modelling of arteries},
+ Year = {2010},
+ DOI = {10.1098/rspa.2010.0058},
+ Journal = {Proceedings of the Royal Society A: Mathematical, Physical
+ and Engineering Science}
+}
+
+###Article{ holzapfel-odgen-review2010,
+ Author = {Holzapfel, G.A. and Ogden, R.W.},
+ Title = {Constitutive modelling of arteries},
+ Year = {2010},
+ DOI = {10.1098/rspa.2010.0058},
+ URL = {http://rspa.royalsocietypublishing.org/content/early/2010/03/26/rspa.2010.0058.abstract},
+ EPrint = {http://rspa.royalsocietypublishing.org/content/early/2010/03/26/rspa.2010.0058.full.pdf+html},
+ Journal = {Proceedings of the Royal Society A: Mathematical, Physical
+ and Engineering Science}
+}
+
+@Article{ holzapfel2000arteries,
+ Title = {A new constitutive framework for arterial wall mechanics
+ and a comparative study of material models},
+ Author = {Holzapfel, Gerhard A and Gasser, Thomas C and Ogden, Ray
+ W},
+ Journal = {Journal of elasticity and the physical science of solids},
+ Volume = {61},
+ Number = {1-3},
+ Pages = {1--48},
+ Year = {2000},
+ Publisher = {Springer}
+}
+
+@Book{ holzapfel2001,
+ Author = {Holzapfel, Gerhard A.},
+ Publisher = {John Wiley \& Sons Ltd.},
+ Title = {{Nonlinear Solid Mechanics: A Continuum Approach for
+ Engineering}},
+ Year = {2000}
+}
+
+@Article{ holzapfel2009ptrs,
+ Title = {Constitutive modelling of passive myocardium: a
+ structurally based framework for material
+ characterization},
+ Author = {Holzapfel, Gerhard A and Ogden, Ray W},
+ Journal = {Philosophical Transactions of the Royal Society of London
+ A: Mathematical, Physical and Engineering Sciences},
+ Volume = {367},
+ Number = {1902},
+ Pages = {3445--3475},
+ Year = {2009},
+ Publisher = {The Royal Society}
+}
+
+@Article{ holzapfel2009royal,
+ Title = {Constitutive modelling of passive myocardium: a
+ structurally based framework for material
+ characterization},
+ Author = {Holzapfel, Gerhard A and Ogden, Ray W},
+ Journal = {Philosophical Transactions of the Royal Society A:
+ Mathematical, Physical and Engineering Sciences},
+ Year = {2009},
+ Number = {1902},
+ Pages = {3445--3475},
+ Volume = {367},
+ File = {:holzapfel09.pdf:PDF},
+ Publisher = {The Royal Society},
+ timestamp = {2014/12/08}
+}
+
+@Article{ holzapfel_gasser_ogden_2000,
+ Title = {A New Constitutive Framework for Arterial Wall Mechanics
+ and a Comparative Study of Material Models},
+ Volume = {61},
+ Publisher = {Springer},
+ Author = {Holzapfel, G. and Gasser, T. and Ogden, R.},
+ Year = {2000},
+ Pages = {1--48}
+}
+
+@Article{ hom_velocity-encoded_2008,
+ Title = {Velocity-Encoded Cine {{MR}} Imaging in Aortic
+ Coarctation: Functional Assessment of Hemodynamic Events},
+ Volume = {28},
+ ShortTitle = {Velocity-Encoded Cine {{MR}} Imaging in Aortic
+ Coarctation},
+ Number = {2},
+ JournalTitle = {Radiographics},
+ Year = {2008},
+ Pages = {407--416},
+ Author = {Hom, Jeffrey J. and Ordovas, Karen and Reddy, Gautham P.}
+}
+
+@Article{ hope_comparison_2007,
+ Title = {Comparison of Flow Patterns in Ascending Aortic Aneurysms
+ and Volunteers Using Four-Dimensional Magnetic Resonance
+ Velocity Mapping},
+ Volume = {26},
+ Number = {6},
+ JournalTitle = {Journal of Magnetic Resonance Imaging: An Official Journal
+ of the International Society for Magnetic Resonance in
+ Medicine},
+ Year = {2007},
+ Pages = {1471--1479},
+ Author = {Hope, Thomas A. and Markl, Michael and Wigström, Lars and
+ Alley, Marcus T. and Miller, D. Craig and Herfkens, Robert
+ J.}
+}
+
+@Book{ hornung-97,
+ Address = {New York},
+ Editor = {Hornung, Ulrich},
+ ISBN = {0-387-94786-8},
+ Pages = {xvi+275},
+ Publisher = {Springer-Verlag},
+ Title = {Homogenization and porous media},
+ Year = {1997}
+}
+
+###Book{ hornung-97,
+ Address = {New York},
+ Editor = {Hornung, Ulrich},
+ ISBN = {0-387-94786-8},
+ Pages = {xvi+275},
+ Publisher = {Springer-Verlag},
+ Title = {Homogenization and porous media},
+ Year = {1997}
+}
+
+@Article{ horny-etal-07,
+ Author = {Horn\'y, L. and Zitn\'y, R. and Chlup, H. and Mackov\'a, H.},
+ Title = {Identification of the material parameters of an aortic
+ wall},
+ Journal = {Bulletin of Applied Mechanics},
+ Volume = {2},
+ Number = {8},
+ Year = {2007},
+ Keywords = {Aorta; constitutive modeling; Fung-type model; inflation
+ test; hyperelasticity; Neo-Hookean model},
+ Abstract = {The passive mechanical response of arterial walls
+ continues to be a topic of great interest. Inflation tests
+ with human thoracic aorta specimens were performed with the
+ aim of fitting a material model. The experimental data was
+ used in a nonlinear regression analysis to identify the
+ material parameters. The aortic tissue was assumed to be an
+ incompressible hyperelastic material. We used a
+ 5âparameter strain energy density function based on a
+ combination of an isotropic NeoâHookean expression and a
+ Fungâtype orthotropic expression. The computational model
+ for identifying the material parameters was based on the
+ boundary value problem of an inflated thickâwalled tube
+ with axial preâstrains. The circumferential residual
+ strains were included. The internal structure of the
+ arterial walls was not considered. The fitted material
+ models correspond very well with the experimental data.
+ Significant stiffening under large strains was observed. It
+ was concluded that the combined model of the strain energy
+ density function is suitable for the aortic mechanical
+ response description. The material parameters satisfy the
+ convexity conditions.},
+ ISSN = {1801-1217}
+}
+
+###Article{ horny-etal-07,
+ Author = {Horn\'y, L. and Zitn\'y, R. and Chlup, H. and Mackov\'a, H.},
+ Title = {Identification of the material parameters of an aortic
+ wall},
+ Journal = {Bulletin of Applied Mechanics},
+ Volume = {2},
+ Number = {8},
+ Year = {2007},
+ Keywords = {Aorta; constitutive modeling; Fung-type model; inflation
+ test; hyperelasticity; Neo-Hookean model},
+ Abstract = {The passive mechanical response of arterial walls
+ continues to be a topic of great interest. Inflation tests
+ with human thoracic aorta specimens were performed with the
+ aim of fitting a material model. The experimental data was
+ used in a nonlinear regression analysis to identify the
+ material parameters. The aortic tissue was assumed to be an
+ incompressible hyperelastic material. We used a
+ 5âparameter strain energy density function based on a
+ combination of an isotropic NeoâHookean expression and a
+ Fungâtype orthotropic expression. The computational model
+ for identifying the material parameters was based on the
+ boundary value problem of an inflated thickâwalled tube
+ with axial preâstrains. The circumferential residual
+ strains were included. The internal structure of the
+ arterial walls was not considered. The fitted material
+ models correspond very well with the experimental data.
+ Significant stiffening under large strains was observed. It
+ was concluded that the combined model of the strain energy
+ density function is suitable for the aortic mechanical
+ response description. The material parameters satisfy the
+ convexity conditions.},
+ ISSN = {1801-1217},
+ URL = {http://bulletin-am.cz/index.php/vam/article/view/43/59}
+}
+
+@Article{ hoskins_accuracy_1996,
+ Title = {Accuracy of Maximum Velocity Estimates Made Using
+ {{Doppler}} Ultrasound Systems},
+ Author = {Hoskins, P. R.},
+ Year = {1996},
+ Volume = {69},
+ Pages = {172--177},
+ Journal = {The British journal of radiology},
+ Number = {818}
+}
+
+@Article{ hoteit-pham-blum-02,
+ Author = {Hoteit, I. and Pham, D.-T. and Blum, J.},
+ date-added = {2009-03-10 11:40:58 -0700},
+ date-modified = {2009-03-10 12:02:17 -0700},
+ DOI = {DOI: 10.1016/S0924-7963(02)00129-X},
+ ISSN = {0924-7963},
+ Journal = {Journal of Marine Systems},
+ Number = {1--2},
+ Pages = {101--127},
+ Title = {A simplified reduced order {K}alman filtering and
+ application to altimetric data assimilation in {T}ropical
+ {P}acific},
+ Volume = {36},
+ Year = {2002}
+}
+
+###Article{ hoteit-pham-blum-02,
+ Author = {Hoteit, I. and Pham, D.-T. and Blum, J.},
+ date-added = {2009-03-10 11:40:58 -0700},
+ date-modified = {2009-03-10 12:02:17 -0700},
+ DOI = {DOI: 10.1016/S0924-7963(02)00129-X},
+ ISSN = {0924-7963},
+ Journal = {Journal of Marine Systems},
+ Number = {1--2},
+ Pages = {101--127},
+ Title = {A simplified reduced order {K}alman filtering and
+ application to altimetric data assimilation in {T}ropical
+ {P}acific},
+ Volume = {36},
+ Year = {2002},
+ bdsk-url-1 = {http://www.sciencedirect.com/science/article/B6VF5-45YG6V2-1/2/36766af659cf7e84807f5e812a2bc4fb},
+ bdsk-url-2 = {http://dx.doi.org/10.1016/S0924-7963(02)00129-X}
+}
+
+@Article{ hou-meir-95,
+ Annote = {mhd, optimal control},
+ Author = {Hou, L. S. and Meir, A. J.},
+ code = {mhd7},
+ Journal = {App. Math. Optim.},
+ Pages = {143-162},
+ Title = {Boundary optimal control of {MHD} flows},
+ Volume = {32},
+ Year = {1995}
+}
+
+###Article{ hou-meir-95,
+ Annote = {mhd, optimal control},
+ Author = {Hou, L. S. and Meir, A. J.},
+ code = {mhd7},
+ Journal = {App. Math. Optim.},
+ Pages = {143-162},
+ Title = {Boundary optimal control of {MHD} flows},
+ Volume = {32},
+ Year = {1995}
+}
+
+@Article{ hou-teng-zhang-96,
+ Author = {Hou, T.Y and Teng, Z.-H. and Zhang, P.},
+ Journal = {Comm. Part. Diff. Eq.},
+ Number = {9-10},
+ Pages = {1551-1585},
+ Title = {Well-posedness of linearized motion for {3-D} water waves
+ far from equilibrium},
+ Volume = {21},
+ Year = {1996}
+}
+
+###Article{ hou-teng-zhang-96,
+ Author = {Hou, T.Y and Teng, Z.-H. and Zhang, P.},
+ Journal = {Comm. Part. Diff. Eq.},
+ Number = {9-10},
+ Pages = {1551-1585},
+ Title = {Well-posedness of linearized motion for {3-D} water waves
+ far from equilibrium},
+ Volume = {21},
+ Year = {1996}
+}
+
+@Article{ howells-74,
+ Annote = {darcy, brinkman},
+ Author = {Howells, I.D.},
+ code = {cel15},
+ Journal = {J. Fluid Mech. },
+ Pages = {449-475},
+ Title = {Drag due to the motion of a Newtonian fluid through a
+ sparse random array of small fixed rigid objects},
+ Volume = {64},
+ Year = {1974}
+}
+
+###Article{ howells-74,
+ Annote = {darcy, brinkman},
+ Author = {Howells, I.D.},
+ code = {cel15},
+ Journal = {J. Fluid Mech. },
+ Pages = {449-475},
+ Title = {Drag due to the motion of a Newtonian fluid through a
+ sparse random array of small fixed rigid objects},
+ Volume = {64},
+ Year = {1974}
+}
+
+@Article{ howells-98,
+ Annote = {darcy, fibrous},
+ Author = {Howells, I. D.},
+ code = {por4},
+ Journal = {J. Fluid Mech.},
+ Pages = {163-192},
+ Title = {Drag on fixed beds of fibres in slow flow},
+ Volume = {355},
+ Year = {1998}
+}
+
+###Article{ howells-98,
+ Annote = {darcy, fibrous},
+ Author = {Howells, I. D.},
+ code = {por4},
+ Journal = {J. Fluid Mech.},
+ Pages = {163-192},
+ Title = {Drag on fixed beds of fibres in slow flow},
+ Volume = {355},
+ Year = {1998}
+}
+
+@Article{ hsu1998,
+ Author = {Hsu, E. W. and Muzikant, A. L. and Matulevicius, S. A. and
+ Penland, R. C. and Henriquez, C. S.},
+ Title = {Magnetic resonance myocardial fiber-orientation mapping
+ with direct histological correlation},
+ Volume = {274},
+ Number = {5},
+ Pages = {H1627-H1634},
+ Year = {1998},
+ Abstract = {Functional properties of the myocardium are mediated by
+ the tissue structure. Consequently, proper physiological
+ studies and modeling necessitate a precise knowledge of the
+ fiber orientation. Magnetic resonance (MR) diffusion tensor
+ imaging techniques have been used as a nondestructive means
+ to characterize tissue fiber structure; however, the
+ descriptions so far have been mostly qualitative. This
+ study presents a direct, quantitative comparison of
+ high-resolution MR fiber mapping and histology measurements
+ in a block of excised canine myocardium. Results show an
+ excellent correspondence of the measured fiber angles not
+ only on a point-by-point basis (average difference of
+ â2.30 ± 0.98°, n = 239) but also in the transmural
+ rotation of the helix angles (average correlation
+ coefficient of 0.942 ± 0.008 with average false-positive
+ probability of 0.004 ± 0.001, n = 24). These data strongly
+ support the hypothesis that the eigenvector of the largest
+ MR diffusion tensor eigenvalue coincides with the
+ orientation of the local myocardial fibers and underscore
+ the potential of MR imaging as a noninvasive,
+ three-dimensional modality to characterize tissue fiber
+ architecture.},
+ Journal = {American Journal of Physiology - Heart and Circulatory
+ Physiology}
+}
+
+@Article{ hu_efficient_2013,
+ Title = {Efficient preloading of the ventricles by a properly timed
+ atrial contraction underlies stroke work improvement in the
+ acute response to cardiac resynchronization therapy},
+ Author = {Hu, Y. and Gurev, V. and Constantino, J. and Trayanova,
+ N.},
+ Journal = {Heart Rhythm},
+ Year = {2013},
+ Month = dec,
+ Number = {12},
+ Pages = {1800--1806},
+ Volume = {10},
+ DOI = {10.1016/j.hrthm.2013.08.003},
+ File = {Unanz.pdf:/home/hoermann/.zotero/zotero/krpbc0h6.default/zotero/storage/AUUAPKQ7/Unanz.pdf:application/pdf},
+ ISSN = {15475271},
+ Language = {en},
+ URL = {http://linkinghub.elsevier.com/retrieve/pii/S1547527113008412},
+ URLDate = {2014-11-28}
+}
+
+@Article{ hu_optimizing_2014,
+ Title = {Optimizing cardiac resynchronization therapy to minimize
+ {ATP} consumption heterogeneity throughout the left
+ ventricle: A simulation analysis using a canine heart
+ failure model},
+ Author = {Hu, Y. and Gurev, V. and Constantino, J. and Trayanova,
+ N.},
+ Journal = {Heart Rhythm},
+ Year = {2014},
+ Month = jun,
+ Number = {6},
+ Pages = {1063--1069},
+ Volume = {11},
+ DOI = {10.1016/j.hrthm.2014.03.021},
+ File = {Zwoa.pdf:/home/hoermann/.zotero/zotero/krpbc0h6.default/zotero/storage/9CJ7B9CK/Zwoa.pdf:application/pdf},
+ ISSN = {15475271},
+ Language = {en},
+ ShortTitle = {Optimizing cardiac resynchronization therapy to minimize
+ {ATP} consumption heterogeneity throughout the left
+ ventricle},
+ URL = {http://linkinghub.elsevier.com/retrieve/pii/S1547527114003026},
+ URLDate = {2014-11-28}
+}
+
+@Article{ huang-hellums-93,
+ Annote = {blood, aggregation, platelet},
+ Author = {Huang, P.Y. and Hellums, J.D.},
+ code = {cel20},
+ Journal = {Biophys. J.},
+ Pages = {334-343},
+ Title = {Aggregation and disaggregation kinetics of human blood
+ platelets: {Part I.} Development and validation of a
+ population balance method},
+ Volume = {65},
+ Year = {1993}
+}
+
+###Article{ huang-hellums-93,
+ Annote = {blood, aggregation, platelet},
+ Author = {Huang, P.Y. and Hellums, J.D.},
+ code = {cel20},
+ Journal = {Biophys. J.},
+ Pages = {334-343},
+ Title = {Aggregation and disaggregation kinetics of human blood
+ platelets: {Part I.} Development and validation of a
+ population balance method},
+ Volume = {65},
+ Year = {1993}
+}
+
+@Article{ huang-hellums-93b,
+ Annote = {blood, aggregation, platelet},
+ Author = {Huang, P.Y. and Hellums, J.D.},
+ Journal = {Biophys. J.},
+ Pages = {344-353},
+ Title = {Aggregation and disaggregation kinetics of human blood
+ platelets: {Part II.} Shear-induced platelet aggregation},
+ Volume = {65},
+ Year = {1993}
+}
+
+###Article{ huang-hellums-93b,
+ Annote = {blood, aggregation, platelet},
+ Author = {Huang, P.Y. and Hellums, J.D.},
+ Journal = {Biophys. J.},
+ Pages = {344-353},
+ Title = {Aggregation and disaggregation kinetics of human blood
+ platelets: {Part II.} Shear-induced platelet aggregation},
+ Volume = {65},
+ Year = {1993}
+}
+
+@Article{ huang-hellums-93c,
+ Annote = {blood, aggregation, platelet},
+ Author = {Huang, P.Y. and Hellums, J.D.},
+ Journal = {Biophys. J.},
+ Pages = {354-361},
+ Title = {Aggregation and disaggregation kinetics of human blood
+ platelets: {Part III.} the disaggregation under shear
+ stress of platelet aggregates},
+ Volume = {65},
+ Year = {1993}
+}
+
+###Article{ huang-hellums-93c,
+ Annote = {blood, aggregation, platelet},
+ Author = {Huang, P.Y. and Hellums, J.D.},
+ Journal = {Biophys. J.},
+ Pages = {354-361},
+ Title = {Aggregation and disaggregation kinetics of human blood
+ platelets: {Part III.} the disaggregation under shear
+ stress of platelet aggregates},
+ Volume = {65},
+ Year = {1993}
+}
+
+@Article{ huerta-liu-88,
+ Author = {Huerta, A. and Liu, W. K.},
+ code = {mob1},
+ Journal = {Comp. Meth. Appl. Mech. Engng.},
+ Pages = {277-324},
+ Title = {Viscous flow with large surface motion},
+ Volume = {69},
+ Year = {1988}
+}
+
+###Article{ huerta-liu-88,
+ Author = {Huerta, A. and Liu, W. K.},
+ code = {mob1},
+ Journal = {Comp. Meth. Appl. Mech. Engng.},
+ Pages = {277-324},
+ Title = {Viscous flow with large surface motion},
+ Volume = {69},
+ Year = {1988}
+}
+
+@Article{ hughes-franca-balestra-86,
+ Author = {Hughes, T.J.R. and Franca, L.P. and Balestra, M.},
+ Journal = {Comp. Meth. App. Mech. Eng.},
+ Pages = {85-99},
+ Title = {A new finite element formulation for computational fluid
+ dynamics~: V. Circumventing the {Babuska-Brezzi}
+ condition~: a stable {Petrov-Galerkin} formulation of the
+ {Stokes} problem accommodating equal-order interpolations},
+ Volume = {59},
+ Year = {1986}
+}
+
+###Article{ hughes-franca-balestra-86,
+ Author = {Hughes, T.J.R. and Franca, L.P. and Balestra, M.},
+ Journal = {Comp. Meth. App. Mech. Eng.},
+ Pages = {85-99},
+ Title = {A new finite element formulation for computational fluid
+ dynamics~: V. Circumventing the {Babuska-Brezzi}
+ condition~: a stable {Petrov-Galerkin} formulation of the
+ {Stokes} problem accommodating equal-order interpolations},
+ Volume = {59},
+ Year = {1986}
+}
+
+@Article{ hughes-mallet-mizukami-86,
+ Author = {Hughes, T.J.R. and Mallet, M. and Mizukami, A.},
+ Journal = {Comp. Meth. App. Mech. Eng.},
+ Pages = {341-355},
+ Title = {A new finite element formulation for computational fluid
+ dynamics: {II.} Beyond {SUPG}},
+ Volume = {54},
+ Year = {1986}
+}
+
+###Article{ hughes-mallet-mizukami-86,
+ Author = {Hughes, T.J.R. and Mallet, M. and Mizukami, A.},
+ Journal = {Comp. Meth. App. Mech. Eng.},
+ Pages = {341-355},
+ Title = {A new finite element formulation for computational fluid
+ dynamics: {II.} Beyond {SUPG}},
+ Volume = {54},
+ Year = {1986}
+}
+
+@Book{ hughes-young-66,
+ Author = {Hughes, W.F. and Young, F.J.},
+ Publisher = {Wiley},
+ Title = {The electromagnetodynamics of fluids},
+ Year = {1966}
+}
+
+###Book{ hughes-young-66,
+ Author = {Hughes, W.F. and Young, F.J.},
+ Publisher = {Wiley},
+ Title = {The electromagnetodynamics of fluids},
+ Year = {1966}
+}
+
+@Book{ humphrey-02,
+ Title = {Cardiovascular solid mechanics: cells, tissues, and
+ organs},
+ Author = {Humphrey, J.D.},
+ ISBN = {9780387951683},
+ lccn = {00069244},
+ Year = {2002},
+ Publisher = {Springer}
+}
+
+###Book{ humphrey-02,
+ Title = {Cardiovascular solid mechanics: cells, tissues, and
+ organs},
+ Author = {Humphrey, J.D.},
+ ISBN = {9780387951683},
+ lccn = {00069244},
+ Year = {2002},
+ Publisher = {Springer}
+}
+
+@Article{ humphrey2002mmmas,
+ Title = {A constrained mixture model for growth and remodeling of
+ soft tissues},
+ Author = {Humphrey, JD and Rajagopal, KR},
+ Journal = {Mathematical models and methods in applied sciences},
+ Year = {2002},
+ Number = {03},
+ Pages = {407--430},
+ Volume = {12},
+ File = {:humphrey02.pdf:PDF},
+ Publisher = {World Scientific},
+ timestamp = {2014/12/02}
+}
+
+@Article{ humphrey2003prsl,
+ Title = {Review Paper: Continuum biomechanics of soft biological
+ tissues},
+ Author = {Humphrey, JD},
+ Journal = {Proceedings of the Royal Society of London. Series A:
+ Mathematical, Physical and Engineering Sciences},
+ Year = {2003},
+ Number = {2029},
+ Pages = {3--46},
+ Volume = {459},
+ File = {:humphrey03.pdf:PDF},
+ Keywords = {soft tissues},
+ Publisher = {The Royal Society},
+ timestamp = {2014/12/02}
+}
+
+@Article{ hunt2005circ,
+ Title = {ACC/AHA 2005 Guideline Update for the Diagnosis and
+ Management of Chronic Heart Failure in the Adult: A Report
+ of the American College of Cardiology/American Heart
+ Association Task Force on Practice Guidelines (Writing
+ Committee to Update the 2001 Guidelines for the Evaluation
+ and Management of Heart Failure): Developed in
+ Collaboration With the American College of Chest Physicians
+ and the International Society for Heart and Lung
+ Transplantation: Endorsed by the Heart Rhythm Society},
+ Author = {Hunt, Sharon Ann and Abraham, William T. and Chin,
+ Marshall H. and Feldman, Arthur M. and Francis, Gary S. and
+ Ganiats, Theodore G. and Jessup, Mariell and Konstam,
+ Marvin A. and Mancini, Donna M. and Michl, Keith and Oates,
+ John A. and Rahko, Peter S. and Silver, Marc A. and
+ Stevenson, Lynne Warner and Yancy, Clyde W. and Antman,
+ Elliott M. and Smith, Sidney C. and Adams, Cynthia D. and
+ Anderson, Jeffrey L. and Faxon, David P. and Fuster,
+ Valentin and Halperin, Jonathan L. and Hiratzka, Loren F.
+ and Hunt, Sharon Ann and Jacobs, Alice K. and Nishimura,
+ Rick and Ornato, Joseph P. and Page, Richard L. and Riegel,
+ Barbara},
+ Journal = {Circulation},
+ Year = {2005},
+ Number = {12},
+ Pages = {e154-e235},
+ Volume = {112},
+ DOI = {10.1161/CIRCULATIONAHA.105.167586},
+ EPrint = {http://circ.ahajournals.org/content/112/12/e154.full.pdf+html},
+ File = {hunt05.pdf:hunt05.pdf:PDF},
+ timestamp = {2015/09/13},
+ URL = {http://circ.ahajournals.org/content/112/12/e154.short}
+}
+
+@Article{ hutchins-71,
+ Author = "Hutchins, G.",
+ Title = "{Coarctation of the Aorta Explained as a Branch-Point of
+ the Ductus Arteriosus}",
+ Journal = "American Journal of Pathology",
+ Volume = "63",
+ Pages = "203-214",
+ Number = "2",
+ Year = "1971"
+}
+
+###Article{ hutchins-71,
+ Author = "Hutchins, G.",
+ Title = "{Coarctation of the Aorta Explained as a Branch-Point of
+ the Ductus Arteriosus}",
+ Journal = "American Journal of Pathology",
+ Volume = "63",
+ Pages = "203-214",
+ Number = "2",
+ Year = "1971"
+}
+
+@Article{ hutchins1978ajc,
+ Title = {Infarct expansion versus extension: Two different
+ complications of acute myocardial infarction },
+ Author = {Grover M. Hutchins and Bernadine H. Bulkley},
+ Journal = {The American Journal of Cardiology },
+ Year = {1978},
+ Number = {7},
+ Pages = {1127 - 1132},
+ Volume = {41},
+ Abstract = {Precordial S-T segment mapping studies have suggested that
+ extension of acute transmural myocardial infarcts occurs in
+ up to 80 percent of patients within 6 days. To determine
+ the morphologic nature of extension 76 consecutive acute
+ myocardial infarcts aged 30 days or less were studied. All
+ infarcts had been clinically diagnosed and proved at
+ autopsy. Extension (histologically more recent foci of
+ contraction band necrosis around an infarct) was found in
+ only 13 infarcts (17 percent). However, ?expansion? (acute
+ dilatation and thinning of the area of infarction not
+ explained by additional myocardial necrosis) was present in
+ 45 infarcts (59 percent). Severe expansion did not develop
+ until 5 days after infarction and was greater with
+ transmural and first infarcts. Clinically diagnosed
+ extension manifested by new pain, S-T segment elevation,
+ rise in serum creatine kinase level and increased
+ congestive heart failure occurred in 14 of the 76 patients
+ (18 percent). At autopsy these clinical extensions were
+ associated with expansion alone in three patients, with
+ extension alone in two and with both in nine. The study
+ shows that expansion is a common complication of acute
+ myocardial infarction that can worsen cardiac function
+ through left ventricular dilatation and can mimic or
+ possibly cause infarct extension. In contrast, extension
+ with additional myocardial necrosis is an infrequent
+ accompaniment of acute myocardial infarction and is usually
+ a result of hypoperfusion. },
+ DOI = {http://dx.doi.org/10.1016/0002-9149(78)90869-X},
+ File = {hutchins78.pdf:hutchins78.pdf:PDF},
+ ISSN = {0002-9149},
+ timestamp = {2015/09/14},
+ URL = {http://www.sciencedirect.com/science/article/pii/000291497890869X}
+}
+
+@Article{ huyghe-arts-van-campen-92,
+ Author = {Huyghe, J.M. and Arts, T. and van Campen, D.H.},
+ Journal = {Am. J. Physiol.},
+ Title = {Porous medium finite element model of the beating left
+ ventricle},
+ Volume = {262},
+ Year = {1992}
+}
+
+###Article{ huyghe-arts-van-campen-92,
+ Author = {Huyghe, J.M. and Arts, T. and van Campen, D.H.},
+ Journal = {Am. J. Physiol.},
+ Title = {Porous medium finite element model of the beating left
+ ventricle},
+ Volume = {262},
+ Year = {1992}
+}
+
+@Article{ hyriacou1999ieemedim,
+ Title = {Nonlinear elastic registration of brain images with tumor
+ pathology using a biomechanical model [MRI]},
+ Author = {Kyriacou, Stelios K and Davatzikos, Christos and Zinreich,
+ S James and Bryan, R Nick},
+ Journal = {Medical Imaging, IEEE Transactions on},
+ Year = {1999},
+ Number = {7},
+ Pages = {580--592},
+ Volume = {18},
+ File = {kyriacou99.pdf:kyriacou99.pdf:PDF},
+ Keywords = {tumor},
+ Publisher = {IEEE},
+ timestamp = {2015/03/27}
+}
+
+@Article{ ii_physically_2018,
+ langid = {english},
+ Title = {Physically Consistent Data Assimilation Method Based on
+ Feedback Control for Patient-Specific Blood Flow Analysis},
+ Volume = {34},
+ ISSN = {2040-7947},
+ URL = {https://onlinelibrary.wiley.com/doi/abs/10.1002/cnm.2910},
+ DOI = {10.1002/cnm.2910},
+ Abstract = {This paper presents a novel data assimilation method for
+ patient-specific blood flow analysis based on feedback
+ control theory called the physically consistent feedback
+ control-based data assimilation (PFC-DA) method. In the
+ PFC-DA method, the signal, which is the residual error term
+ of the velocity when comparing the numerical and reference
+ measurement data, is cast as a source term in a Poisson
+ equation for the scalar potential field that induces flow
+ in a closed system. The pressure values at the inlet and
+ outlet boundaries are recursively calculated by this scalar
+ potential field. Hence, the flow field is physically
+ consistent because it is driven by the calculated inlet and
+ outlet pressures, without any artificial body forces. As
+ compared with existing variational approaches, although
+ this PFC-DA method does not guarantee the optimal solution,
+ only one additional Poisson equation for the scalar
+ potential field is required, providing a remarkable
+ improvement for such a small additional computational cost
+ at every iteration. Through numerical examples for 2D and
+ 3D exact flow fields, with both noise-free and noisy
+ reference data as well as a blood flow analysis on a
+ cerebral aneurysm using actual patient data, the robustness
+ and accuracy of this approach is shown. Moreover, the
+ feasibility of a patient-specific practical blood flow
+ analysis is demonstrated.},
+ Number = {1},
+ JournalTitle = {International Journal for Numerical Methods in Biomedical
+ Engineering},
+ URLDate = {2019-02-28},
+ Year = {2018},
+ Pages = {e2910},
+ Author = {Ii, Satoshi and Adib, Mohd Azrul Hisham Mohd and Watanabe,
+ Yoshiyuki and Wada, Shigeo}
+}
+
+@Article{ imagawa-hayase-08-eigenvalue,
+ Title = {Eigenvalue Analysis for Error Dynamics of Measurement
+ Integrated Simulation to Reproduce Real Flows},
+ Author = {Imagawa, K. and Hayase, T.},
+ Journal = {Bulletin of the American Physical Society},
+ Volume = {53},
+ Year = {2008},
+ Publisher = {APS}
+}
+
+###Article{ imagawa-hayase-08-eigenvalue,
+ Title = {Eigenvalue Analysis for Error Dynamics of Measurement
+ Integrated Simulation to Reproduce Real Flows},
+ Author = {Imagawa, K. and Hayase, T.},
+ Journal = {Bulletin of the American Physical Society},
+ Volume = {53},
+ Year = {2008},
+ Publisher = {APS}
+}
+
+@InCollection{ imperiale2013lncs,
+ Title = {Improving efficiency of data assimilation procedure for a
+ biomechanical heart model by representing surfaces as
+ currents},
+ Author = {Imperiale, Alexandre and Routier, Alexandre and Durrleman,
+ Stanley and Moireau, Philippe},
+ BookTitle = {Functional Imaging and Modeling of the Heart},
+ Pages = {342--351},
+ Year = {2013},
+ Publisher = {Springer}
+}
+
+@Unpublished{ incidence,
+ Author = {http://www.nlm.nih.gov/medlineplus},
+ Title = {A service of the {U.S. National Library of medicine and
+ the National Institutes of Health and the National
+ Institutes of Health.}}
+}
+
+###Unpublished{ incidence,
+ Author = {http://www.nlm.nih.gov/medlineplus},
+ Title = {A service of the {U.S. National Library of medicine and
+ the National Institutes of Health and the National
+ Institutes of Health.}}
+}
+
+@Article{ ingkanisorn2004jacc,
+ Title = {Gadolinium delayed enhancement cardiovascular magnetic
+ resonance correlates with clinical measures of myocardial
+ infarction.},
+ Author = {Ingkanisorn, W Patricia and Rhoads, Kenneth L. and
+ Aletras, Anthony H. and Kellman, Peter and Arai, Andrew
+ E.},
+ Journal = {J Am Coll Cardiol},
+ Year = {2004},
+ Month = {Jun},
+ Number = {12},
+ Pages = {2253--2259},
+ Volume = {43},
+ Abstract = {The current study tested the hypothesis that gadolinium
+ delayed enhancement assessment of infarct size correlates
+ with clinical indices of myocardial infarction (MI) in
+ humans. Acute infarct mass by cardiac magnetic resonance
+ (CMR) was compared with peak troponin I, acute and chronic
+ left ventricular (LV) systolic function, and chronic
+ infarct mass in patients imaged after recent acute
+ MI.Cardiac magnetic resonance accurately determines
+ myocardial viability in patients with chronic ischemic
+ heart disease but is not well validated for recent
+ MI.Patients with first acute MI (n = 33) or chronic MI (n =
+ 10) underwent cine CMR followed by gadolinium delayed
+ enhancement imaging. A follow-up CMR scan was performed on
+ 20 of the 33 acute MI patients and all of the chronic MI
+ patients.In patients with acute percutaneous coronary
+ intervention, acute MI mass correlated with peak troponin I
+ (r = 0.83, p < 0.001, n = 23). In the 20 acute infarct
+ patients with follow-up CMR scans, the acute infarct size
+ correlated well with the follow-up LV ejection fraction (r
+ = 0.86, p < 0.001). The transmural extent of delayed
+ enhancement imaged acutely correlated inversely with wall
+ thickening measured acutely (p < 0.001) and at follow-up (p
+ < 0.001). Although chronic infarct size was reproducible
+ (11 +/- 4\% vs. 12 +/- 7\%, p = NS), acute infarct size
+ decreased from 16 +/- 12\% to 11 +/- 9\% (p < 0.003).In
+ humans imaged shortly after acute MI, gadolinium delayed
+ enhancement acute CMR infarct size correlates with acute
+ and chronic indices of infarct size but will appear to
+ diminish in size on follow-up.},
+ DOI = {10.1016/j.jacc.2004.02.046},
+ Institution = {National Heart, Lung, and Blood Institute, National
+ Institutes of Health, Department of Health and Human
+ Services, Bethesda, Maryland 20892-1061, USA.},
+ Keywords = {Aged; Biological Markers, blood; Contrast Media; Female;
+ Follow-Up Studies; Gadolinium DTPA, diagnostic use; Humans;
+ Magnetic Resonance Imaging, Cine; Male; Middle Aged;
+ Myocardial Contraction, physiology; Myocardial Infarction,
+ blood/physiopathology/radiography; Predictive Value of
+ Tests; Radiographic Image Enhancement; Reproducibility of
+ Results; Statistics as Topic; Stroke Volume, physiology;
+ Troponin I, blood},
+ Language = {eng},
+ medline-pst = {ppublish},
+ owner = {stoeckc},
+ pii = {S0735109704005923},
+ pmid = {15193689},
+ timestamp = {2015.07.24},
+ URL = {http://dx.doi.org/10.1016/j.jacc.2004.02.046}
+}
+
+@Article{ irons-tuck-69,
+ Author = {Irons, B. and Tuck, R.C.},
+ Journal = {Int. J. Num. Meth. Engng.},
+ Pages = {275-277},
+ Title = {A version of the Aitken accelerator for computer
+ implementation},
+ Volume = {1},
+ Year = {1969}
+}
+
+###Article{ irons-tuck-69,
+ Author = {Irons, B. and Tuck, R.C.},
+ Journal = {Int. J. Num. Meth. Engng.},
+ Pages = {275-277},
+ Title = {A version of the Aitken accelerator for computer
+ implementation},
+ Volume = {1},
+ Year = {1969}
+}
+
+@InBook{ ismail2013,
+ Author = "Ismail, Mahmoud and Gee, Michael W. and Wall, Wolfgang A.",
+ Chapter = "CFD Challenge: Hemodynamic Simulation of a
+ Patient-Specific Aortic Coarctation Model with
+ Adjoint-Based Calibrated Windkessel Elements",
+ Title = "STACOM 2012, Nice, France.",
+ Year = "2013",
+ Publisher = "Springer Berlin Heidelberg",
+ Address = "Berlin, Heidelberg",
+ Pages = "44--52",
+ ISBN = "978-3-642-36961-2",
+ DOI = "10.1007/978-3-642-36961-2_6",
+ URL = "http://dx.doi.org/10.1007/978-3-642-36961-2_6"
+}
+
+###InBook{ ismail2013,
+ Author = "Ismail, Mahmoud and Gee, Michael W. and Wall, Wolfgang A.",
+ Chapter = "CFD Challenge: Hemodynamic Simulation of a
+ Patient-Specific Aortic Coarctation Model with
+ Adjoint-Based Calibrated Windkessel Elements",
+ Title = "STACOM 2012, Nice, France.",
+ Year = "2013",
+ Publisher = "Springer Berlin Heidelberg",
+ Address = "Berlin, Heidelberg",
+ Pages = "44--52",
+ ISBN = "978-3-642-36961-2",
+ DOI = "10.1007/978-3-642-36961-2_6"
+}
+
+@Article{ ismail2013ijnmbe,
+ Title = {Coupled and reduced dimensional modeling of respiratory
+ mechanics during spontaneous breathing},
+ Author = {Ismail, M and Comerford, A and Wall, WA},
+ Journal = {International Journal for Numerical Methods in Biomedical
+ Engineering},
+ Volume = {29},
+ Number = {11},
+ Pages = {1285--1305},
+ Year = {2013},
+ Publisher = {Wiley Online Library}
+}
+
+@Article{ ismail2013jcp,
+ Title = {Adjoint-based inverse analysis of windkessel parameters
+ for patient-specific vascular models},
+ Author = {Ismail, Mahmoud and Wall, Wolfgang A and Gee, Michael W},
+ Journal = {Journal of Computational Physics},
+ Volume = {244},
+ Pages = {113--130},
+ Year = {2013},
+ Publisher = {Elsevier}
+}
+
+@Article{ ismail_adjoint-based_2013,
+ Title = {Adjoint-Based Inverse Analysis of Windkessel Parameters
+ for Patient-Specific Vascular Models},
+ Volume = {244},
+ JournalTitle = {Journal of Computational Physics},
+ Year = {2013},
+ Pages = {113--130},
+ Author = {Ismail, Mahmoud and Wall, Wolfgang A. and Gee, Michael
+ W.}
+}
+
+@InProceedings{ ismail_cfd_2012,
+ Title = {{{CFD}} Challenge: Hemodynamic Simulation of a
+ Patient-Specific Aortic Coarctation Model with
+ Adjoint-Based Calibrated Windkessel Elements},
+ URL = {http://link.springer.com/chapter/10.1007/978-3-642-36961-2_6},
+ ShortTitle = {{{CFD}} Challenge},
+ BookTitle = {International {{Workshop}} on {{Statistical Atlases}} and
+ {{Computational Models}} of the {{Heart}}},
+ Publisher = {{Springer}},
+ URLDate = {2016-11-21},
+ Year = {2012},
+ Pages = {44--52},
+ Author = {Ismail, Mahmoud and Gee, Michael W. and Wall, Wolfgang
+ A.}
+}
+
+@Article{ iung2003prospective,
+ Title = {A prospective survey of patients with valvular heart
+ disease in Europe: The Euro Heart Survey on Valvular Heart
+ Disease},
+ Author = {Iung, Bernard and Baron, Gabriel and Butchart, Eric G and
+ Delahaye, Fran{\c{c}}ois and Gohlke-B{\"a}rwolf, Christa
+ and Levang, Olaf W and Tornos, Pilar and Vanoverschelde,
+ Jean-Louis and Vermeer, Frank and Boersma, Eric and others},
+ Journal = {European heart journal},
+ Volume = {24},
+ Number = {13},
+ Pages = {1231--1243},
+ Year = {2003},
+ Publisher = {Oxford University Press}
+}
+
+@Article{ iung2011epidemiology,
+ Title = {Epidemiology of valvular heart disease in the adult},
+ Author = {Iung, B. and Vahanian, A.},
+ Journal = {Nature Reviews Cardiology},
+ Volume = {8},
+ Number = {3},
+ Pages = {162--172},
+ Year = {2011},
+ Publisher = {Nature Publishing Group}
+}
+
+@Article{ jackson-james-86,
+ Author = {Jackson, G.W. and James, D.F.},
+ Journal = {The Canadian Journal of Chemical Engineering},
+ Title = {The permeability of fibrous porous media},
+ Volume = {64},
+ Year = {1986}
+}
+
+###Article{ jackson-james-86,
+ Author = {Jackson, G.W. and James, D.F.},
+ Journal = {The Canadian Journal of Chemical Engineering},
+ Title = {The permeability of fibrous porous media},
+ Volume = {64},
+ Year = {1986}
+}
+
+@Article{ james-davis-01,
+ Annote = {brinkman},
+ Author = {James, D.F. and Davis, A.M.J.},
+ code = {por8},
+ Journal = {J. Fluid Mech.},
+ Pages = {47-72},
+ Title = {Flow at the interface of a model fibrous porous medium},
+ Volume = {426},
+ Year = {2001}
+}
+
+###Article{ james-davis-01,
+ Annote = {brinkman},
+ Author = {James, D.F. and Davis, A.M.J.},
+ code = {por8},
+ Journal = {J. Fluid Mech.},
+ Pages = {47-72},
+ Title = {Flow at the interface of a model fibrous porous medium},
+ Volume = {426},
+ Year = {2001}
+}
+
+@InProceedings{ jarvinen-raback-lyly-05,
+ Author = {J\"arvinen, E. and R\.aback, P. and Lyly, M.},
+ BookTitle = {2nd International Symposium on Modelling of Physiological
+ Flows -- MPF 2005, Sesimbra, Portugal},
+ Title = {Optimization of fluid-structure interaction scheme for
+ arterial flow simulations},
+ Year = {2005}
+}
+
+###InProceedings{ jarvinen-raback-lyly-05,
+ Author = {J\"arvinen, E. and R\.aback, P. and Lyly, M.},
+ BookTitle = {2nd International Symposium on Modelling of Physiological
+ Flows -- MPF 2005, Sesimbra, Portugal},
+ Title = {Optimization of fluid-structure interaction scheme for
+ arterial flow simulations},
+ Year = {2005}
+}
+
+@Article{ jenkins1999coarctation,
+ Title = {Coarctation of the aorta: natural history and outcome
+ after surgical treatment},
+ Author = {Jenkins, NP and Ward, C},
+ Journal = {Qjm},
+ Volume = {92},
+ Number = {7},
+ Pages = {365--371},
+ Year = {1999},
+ Publisher = {Oxford Univ Press}
+}
+
+@Article{ jenkins_coarctation_1999,
+ Title = {Coarctation of the Aorta: Natural History and Outcome
+ after Surgical Treatment},
+ Volume = {92},
+ ShortTitle = {Coarctation of the Aorta},
+ Number = {7},
+ JournalTitle = {Qjm},
+ Year = {1999},
+ Pages = {365--371},
+ Author = {Jenkins, N. P. and Ward, C.}
+}
+
+@Article{ jenson2013raj,
+ Title = {Review of Cardiac and {MR} Perfusion and Imaging},
+ Author = {Jenson, Sheldon and Craig, Steven and York, Gerald and
+ Steel, Kevin},
+ Journal = {Journal of the American Osteopathic College of Radiology},
+ Year = {2013},
+ Volume = {2},
+ File = {:Jenson2013RAJ.pdf:PDF},
+ Keywords = {perfusion, MRI}
+}
+
+@Book{ jikov-kozlov-94,
+ Address = {Berlin},
+ Author = {Jikov, V. V. and Kozlov, S. M. and Ole\u{\i}nik, O. A.},
+ Publisher = {Springer-Verlag},
+ Title = {Homogenization of differential operators and integral
+ functionals},
+ Year = {1994}
+}
+
+###Book{ jikov-kozlov-94,
+ Address = {Berlin},
+ Author = {Jikov, V. V. and Kozlov, S. M. and Ole\u{\i}nik, O. A.},
+ Publisher = {Springer-Verlag},
+ Title = {Homogenization of differential operators and integral
+ functionals},
+ Year = {1994}
+}
+
+@Book{ john2016finite,
+ Title = {Finite element methods for incompressible flow problems},
+ Author = {John, Volker},
+ Journal = {Springer series in computational mathematics (},
+ Volume = {51},
+ Year = {2016},
+ Publisher = {Springer}
+}
+
+@Article{ john_slip_2002,
+ Title = {Slip with Friction and Penetration with Resistance
+ Boundary Conditions for the {{Navier}}â{{Stokes}}
+ EquationsâNumerical Tests and Aspects of the
+ Implementation},
+ Volume = {147},
+ ISSN = {0377-0427},
+ URL = {http://www.sciencedirect.com/science/article/pii/S0377042702004375},
+ DOI = {10.1016/S0377-0427(02)00437-5},
+ Abstract = {We consider slip with friction and penetration with
+ resistance boundary conditions in the steady state
+ NavierâStokes equations. This paper describes some
+ aspects of the implementation of these boundary conditions
+ for finite element discretizations. Numerical tests on two-
+ and three-dimensional channel flows across a step using the
+ slip with friction boundary condition study the influence
+ of the friction parameter on the position of the
+ reattachment point and the reattachment line of the
+ recirculating vortex, respectively.},
+ Number = {2},
+ JournalTitle = {Journal of Computational and Applied Mathematics},
+ ShortJournal = {Journal of Computational and Applied Mathematics},
+ URLDate = {2016-04-20},
+ Date = {2002},
+ Pages = {287-300},
+ Author = {John, Volker}
+}
+
+@Article{ john_time-dependent_2006,
+ Title = {Time-Dependent Flow across a Step: The Slip with Friction
+ Boundary Condition},
+ Volume = {50},
+ URL = {http://onlinelibrary.wiley.com/doi/10.1002/fld.1074/full},
+ ShortTitle = {Time-Dependent Flow across a Step},
+ Number = {6},
+ JournalTitle = {International journal for numerical methods in fluids},
+ URLDate = {2016-08-22},
+ Date = {2006},
+ Pages = {713--731},
+ Author = {John, Volker and Liakos, Anastasios}
+}
+
+@Article{ johnsiamreview2016,
+ Title = {On the divergence constraint in mixed finite element
+ methods for incompressible flows},
+ Author = {John, V. and Linke, A. and Merdon, C. and Neilan, M. and
+ Rebholz, L.},
+ Journal = {SIAM Review},
+ Note = {in press}
+}
+
+@Book{ johnson-97,
+ Address = {Cambridge},
+ Author = {Johnson, R. S.},
+ Publisher = {Cambridge University Press},
+ Title = {A modern introduction to the mathematical theory of water
+ waves},
+ Year = {1997}
+}
+
+###Book{ johnson-97,
+ Address = {Cambridge},
+ Author = {Johnson, R. S.},
+ Publisher = {Cambridge University Press},
+ Title = {A modern introduction to the mathematical theory of water
+ waves},
+ Year = {1997}
+}
+
+@Article{ johnson-saranen-86,
+ Author = {Johnson, C. and Saranen, J.},
+ Journal = {Math. of Comp.},
+ Month = {July},
+ Number = {175},
+ Pages = {1-18},
+ Title = {Streamline diffusion methods for the incompressible
+ {Euler} and {Navier-Stokes} equations},
+ Volume = {47},
+ Year = {1986}
+}
+
+###Article{ johnson-saranen-86,
+ Author = {Johnson, C. and Saranen, J.},
+ Journal = {Math. of Comp.},
+ Month = {July},
+ Number = {175},
+ Pages = {1-18},
+ Title = {Streamline diffusion methods for the incompressible
+ {Euler} and {Navier-Stokes} equations},
+ Volume = {47},
+ Year = {1986}
+}
+
+@Article{ johnson2010mrm,
+ Title = {Improved SNR in phase contrast velocimetry with five-point
+ balanced flow encoding.},
+ Author = {Johnson, Kevin M. and Markl, Michael},
+ Journal = {Magn Reson Med},
+ Year = {2010},
+ Month = {Feb},
+ Number = {2},
+ Pages = {349--355},
+ Volume = {63},
+ Abstract = {Phase contrast velocimetry can be utilized to measure
+ complex flow for both quantitative and qualitative
+ assessment of vascular hemodynamics. However, phase
+ contrast requires that a maximum measurable velocity be set
+ that balances noise and phase aliasing. To efficiently
+ reduce noise in phase contrast images, several
+ investigators have proposed extended velocity encoding
+ schemes that use extra encodings to unwrap phase aliasing;
+ however, existing techniques can lead to significant
+ increases in echo and scan time, limiting their clinical
+ benefits. In this work, we have developed a novel
+ five-point velocity encoding scheme that efficiently
+ reduces noise with minimal increases in scan and echo time.
+ Investigations were performed in phantoms, demonstrating a
+ 63\% increase in velocity-to-noise ratio compared to
+ standard four-point encoding schemes. Aortic velocity
+ measurements were performed in healthy volunteers, showing
+ similar velocity-to-noise ratio improvements. In those
+ volunteers, it was also demonstrated that, without
+ sacrificing accuracy, low-resolution images can be used for
+ the fifth encoding point, reducing the scan time penalty
+ from 25\% down to less than 1\%.},
+ DOI = {10.1002/mrm.22202},
+ Institution = {Department of Medical Physics, University of Wisconsin,
+ Madison, Wisconsin 53705-2275, USA. kmjohnson3@wisc.e},
+ Keywords = {Algorithms; Aorta, anatomy /&/ histology/physiology; Blood
+ Flow Velocity, physiology; Contrast Media; Humans; Image
+ Enhancement, methods; Image Interpretation,
+ Computer-Assisted, methods; Imaging, Three-Dimensional,
+ methods; Magnetic Resonance Angiography, methods;
+ Reproducibility of Results; Rheology, methods; Sensitivity
+ and Specificity},
+ Language = {eng},
+ medline-pst = {ppublish},
+ owner = {stoeckc},
+ pmid = {20099326},
+ timestamp = {2015.07.24},
+ URL = {http://dx.doi.org/10.1002/mrm.22202}
+}
+
+@Article{ johnston-kilpatrick-91,
+ Author = {Johnston, P.R. and Kilpatrick, D.},
+ Journal = {J. Biomechanics},
+ Number = {11},
+ Pages = {1069-1077},
+ Title = {Mathematical modelling of flow through an irregular
+ arterial stenosis},
+ Volume = {24},
+ Year = {1991}
+}
+
+###Article{ johnston-kilpatrick-91,
+ Author = {Johnston, P.R. and Kilpatrick, D.},
+ Journal = {J. Biomechanics},
+ Number = {11},
+ Pages = {1069-1077},
+ Title = {Mathematical modelling of flow through an irregular
+ arterial stenosis},
+ Volume = {24},
+ Year = {1991}
+}
+
+###Article{ johnston_non-newtonian_2004,
+ langid = {english},
+ Title = {Non-{{Newtonian}} Blood Flow in Human Right Coronary
+ Arteries: Steady State Simulations},
+ Volume = {37},
+ ISSN = {00219290},
+ URL = {http://linkinghub.elsevier.com/retrieve/pii/S0021929003003579},
+ DOI = {10.1016/j.jbiomech.2003.09.016},
+ ShortTitle = {Non-{{Newtonian}} Blood Flow in Human Right Coronary
+ Arteries},
+ Abstract = {This study looks at blood ï¬ow through four different
+ right coronary arteries, which have been reconstructed from
+ bi-plane angiograms. Five non-Newtonian blood models, as
+ well as the usual Newtonian model of blood viscosity, are
+ used to study the wall shear stress in each of these
+ arteries at a particular point in the cardiac cycle. It was
+ found that in the case of steady ï¬ow in a given artery,
+ the pattern of wall shear stress is consistent across all
+ models. The magnitude of wall shear stress, however, is
+ inï¬uenced by the model used and correlates with graphs of
+ shear stress versus strain for each model. For mid-range
+ velocities of around 0:2 m sÃ1; the models are virtually
+ indistinguishable. Local and global non-Newtonian
+ importance factors are introduced, in an attempt to
+ quantify the types of ï¬ows where non-Newtonian behaviour
+ is signiï¬cant. It is concluded that, while the Newtonian
+ model of blood viscosity is a good approximation in regions
+ of mid-range to high shear, it is advisable to use the
+ Generalised Power Law model (which tends to the Newtonian
+ model in those shear ranges in any case) in order to
+ achieve better approximation of wall shear stress at low
+ shear.},
+ Number = {5},
+ JournalTitle = {Journal of Biomechanics},
+ URLDate = {2019-02-13},
+ Year = {2004-05},
+ Pages = {709-720},
+ Author = {Johnston, Barbara M. and Johnston, Peter R. and Corney,
+ Stuart and Kilpatrick, David}
+}
+
+@Article{ jones1999optimal,
+ Author = {Jones, DK and Horsfield, MA and Simmons, A},
+ Title = {Optimal strategies for measuring diffusion in anisotropic
+ systems by magnetic resonance imaging},
+ Journal = {Magnetic Resonance in Medicine},
+ Year = {1999},
+ Volume = {42}
+}
+
+@InProceedings{ juarez-glowinski-pan-02,
+ Author = {Ju{\'a}rez, L. H. and Glowinski, R. and Pan, T. W.},
+ BookTitle = {Proceedings of the Fifth International Conference on
+ Spectral and High Order Methods (ICOSAHOM-01) (Uppsala)},
+ coden = {JSCOEB},
+ fjournal = {Journal of Scientific Computing},
+ ISSN = {0885-7474},
+ Journal = {J. Sci. Comput.},
+ mrclass = {76M10 (65M60 76T20)},
+ mrnumber = {MR1910762},
+ Number = {1-4},
+ Pages = {683--694},
+ Title = {Numerical simulation of the sedimentation of rigid bodies
+ in an incompressible viscous fluid by {L}agrange
+ multiplier/fictitious domain methods combined with the
+ {T}aylor-{H}ood finite element approximation},
+ Volume = {17},
+ Year = {2002}
+}
+
+###InProceedings{ juarez-glowinski-pan-02,
+ Author = {Ju{\'a}rez, L. H. and Glowinski, R. and Pan, T. W.},
+ BookTitle = {Proceedings of the Fifth International Conference on
+ Spectral and High Order Methods (ICOSAHOM-01) (Uppsala)},
+ coden = {JSCOEB},
+ fjournal = {Journal of Scientific Computing},
+ ISSN = {0885-7474},
+ Journal = {J. Sci. Comput.},
+ mrclass = {76M10 (65M60 76T20)},
+ mrnumber = {MR1910762},
+ Number = {1-4},
+ Pages = {683--694},
+ Title = {Numerical simulation of the sedimentation of rigid bodies
+ in an incompressible viscous fluid by {L}agrange
+ multiplier/fictitious domain methods combined with the
+ {T}aylor-{H}ood finite element approximation},
+ Volume = {17},
+ Year = {2002}
+}
+
+@Article{ jugdutt2003circ,
+ Title = {Ventricular Remodeling After Infarction and the
+ Extracellular Collagen Matrix: When Is Enough Enough?},
+ Author = {Jugdutt, Bodh I.},
+ Journal = {Circulation},
+ Year = {2003},
+ Number = {11},
+ Pages = {1395-1403},
+ Volume = {108},
+ DOI = {10.1161/01.CIR.0000085658.98621.49},
+ EPrint = {http://circ.ahajournals.org/content/108/11/1395.full.pdf+html},
+ File = {jugdutt03.pdf:jugdutt03.pdf:PDF},
+ timestamp = {2015/09/13},
+ URL = {http://circ.ahajournals.org/content/108/11/1395.short}
+}
+
+@InProceedings{ julier-03,
+ Author = {Julier, S.},
+ BookTitle = {Proc. of the American Control Conference},
+ date-added = {},
+ date-modified = {},
+ Pages = {2430--4234},
+ Title = {The Spherical Simplex Unscented Transformation},
+ Year = {2003}
+}
+
+###InProceedings{ julier-03,
+ Author = {Julier, S.},
+ BookTitle = {Proc. of the American Control Conference},
+ date-added = {},
+ date-modified = {},
+ Pages = {2430--4234},
+ Title = {The Spherical Simplex Unscented Transformation},
+ Year = {2003}
+}
+
+@InProceedings{ julier-uhlmann-02,
+ Author = {Julier, S. and Uhlmann, J.},
+ BookTitle = {Proc. of IEEE Am.Contr.Conf.},
+ date-added = {},
+ date-modified = {},
+ Pages = {887--892},
+ Title = {Reduced Sigma Point Filters for the Propagation of Means
+ and Covariances through Nonlinear Transformations},
+ Year = {2002}
+}
+
+###InProceedings{ julier-uhlmann-02,
+ Author = {Julier, S. and Uhlmann, J.},
+ BookTitle = {Proc. of IEEE Am.Contr.Conf.},
+ date-added = {},
+ date-modified = {},
+ Pages = {887--892},
+ Title = {Reduced Sigma Point Filters for the Propagation of Means
+ and Covariances through Nonlinear Transformations},
+ Year = {2002}
+}
+
+@Article{ julier-uhlmann-durrant-whyte-00,
+ Title = {{A new method for the nonlinear transformation of means
+ and covariances in filters and estimators}},
+ Author = {Julier, S. and Uhlmann, J. and Durrant-Whyte, H.F.},
+ Journal = {Automatic Control, IEEE Transactions on},
+ Volume = {45},
+ Number = {3},
+ Pages = {477--482},
+ ISSN = {0018-9286},
+ Year = {2000},
+ Publisher = {IEEE}
+}
+
+###Article{ julier-uhlmann-durrant-whyte-00,
+ Title = {{A new method for the nonlinear transformation of means
+ and covariances in filters and estimators}},
+ Author = {Julier, S. and Uhlmann, J. and Durrant-Whyte, H.F.},
+ Journal = {Automatic Control, IEEE Transactions on},
+ Volume = {45},
+ Number = {3},
+ Pages = {477--482},
+ ISSN = {0018-9286},
+ Year = {2000},
+ Publisher = {IEEE}
+}
+
+@InProceedings{ julier-uhlmann-durrant-whyte-95,
+ Author = {Julier, S. and Uhlmann, J. and Durrant-Whyte, H.F.},
+ BookTitle = {American Control Conference},
+ date-added = {2009-03-10 11:39:26 -0700},
+ date-modified = {2009-03-10 11:43:35 -0700},
+ Pages = {1628--1632},
+ Title = {A new approach for filtering nonlinear systems},
+ Year = {1995}
+}
+
+###InProceedings{ julier-uhlmann-durrant-whyte-95,
+ Author = {Julier, S. and Uhlmann, J. and Durrant-Whyte, H.F.},
+ BookTitle = {American Control Conference},
+ date-added = {2009-03-10 11:39:26 -0700},
+ date-modified = {2009-03-10 11:43:35 -0700},
+ Pages = {1628--1632},
+ Title = {A new approach for filtering nonlinear systems},
+ Year = {1995}
+}
+
+@InProceedings{ julier_new_1997,
+ Title = {New Extension of the {{Kalman}} Filter to Nonlinear
+ Systems},
+ Volume = {3068},
+ BookTitle = {Signal Processing, Sensor Fusion, and Target Recognition
+ {{VI}}},
+ Publisher = {{International Society for Optics and Photonics}},
+ Year = {1997},
+ Pages = {182--194},
+ Author = {Julier, Simon J. and Uhlmann, Jeffrey K.}
+}
+
+@Article{ jung2006ejcs,
+ Title = {Investigating myocardial motion by MRI using tissue phase
+ mapping.},
+ Author = {Jung, Bernd and Markl, Michael and F{\"{o}}ll, Daniela and
+ Hennig, J{\"{u}}rgen},
+ Journal = {Eur J Cardiothorac Surg},
+ Year = {2006},
+ Month = {Apr},
+ Pages = {S150--S157},
+ Volume = {29 Suppl 1},
+ Abstract = {Velocity-encoded phase contrast magnetic resonance imaging
+ (MRI) provides a tool to quantify regional myocardial wall
+ motion of the entire heart. It allows the acquisition of
+ three-directional velocity vector fields with high spatial
+ resolution that reflect the temporal evolution of
+ myocardial velocities over the cardiac cycle. In contrast
+ to other imaging modalities such as echocardiography left
+ ventricular performance can be assessed without limited
+ anatomical or functional coverage.Compared to other
+ techniques that quantify local myocardial contractility
+ (e.g. implanted ultrasonic crystals) by means of regional
+ displacement, phase contrast MRI provides information about
+ local and global left ventricular velocities (i.e. motion)
+ by utilizing the intrinsic motion sensitivity of MRI. The
+ resultant motion components of contraction, expansion,
+ rotation, lengthening, and shortening of the left ventricle
+ are described in high spatial and temporal detail. Phase
+ contrast measurements were performed in 12 healthy
+ volunteers with a respiratory-gated technique in order to
+ achieve a high temporal resolution of 13.8ms to demonstrate
+ the detailed assessment of global and regional myocardial
+ motion.Data revealed details in left ventricular motion
+ patterns that were previously not seen in phase contrast
+ measurements and are only known from echocardiography. For
+ all volunteers, characteristic myocardial motion patterns
+ and locally different radial (i.e. contraction and
+ expansion), rotational (i.e. twisting and untwisting) and
+ longitudinal (i.e. lengthening and shortening) motion
+ components could be detected with high accuracy.The phase
+ contrast MRI technique for high temporal resolution
+ velocity mapping is therefore very promising for the
+ investigation and better understanding of the myocardial
+ motion in normal subjects and patients with disturbed left
+ ventricular performance and may validate further testing of
+ different models of cardiac structure.},
+ DOI = {10.1016/j.ejcts.2006.02.066},
+ Institution = {Department of Diagnostic Radiology, Medical Physics,
+ University Hospital, Freiburg University, Hugstetterstr.55,
+ 79106 Freiburg, Germany. bernd.jung@uniklinik-freiburg.de},
+ Keywords = {Heart, physiology; Humans; Image Processing,
+ Computer-Assisted, methods; Magnetic Resonance Imaging,
+ methods; Movement, physiology; Myocardial Contraction,
+ physiology; Rotation; Ventricular Function, Left,
+ physiology},
+ Language = {eng},
+ medline-pst = {ppublish},
+ owner = {stoeckc},
+ pii = {S1010-7940(06)00234-X},
+ pmid = {16563784},
+ timestamp = {2015.07.24},
+ URL = {http://dx.doi.org/10.1016/j.ejcts.2006.02.066}
+}
+
+@Article{ kailath-sayed-hassibi-00,
+ Title = {Linear estimation},
+ Author = {Kailath, T. and Sayed, A.H. and Hassibi, B.},
+ Year = {2000},
+ Publisher = {Prentice-Hall, Inc.}
+}
+
+###Article{ kailath-sayed-hassibi-00,
+ Title = {Linear estimation},
+ Author = {Kailath, T. and Sayed, A.H. and Hassibi, B.},
+ Year = {2000},
+ Publisher = {Prentice-Hall, Inc.}
+}
+
+@Article{ kajstura2010circ,
+ Title = {Cardiomyogenesis in the Adult Human Heart},
+ Author = {Kajstura, Jan and Urbanek, Konrad and Perl, Shira and
+ Hosoda, Toru and Zheng, Hanqiao and Ogórek, Barbara and
+ Ferreira-Martins, João and Goichberg, Polina and
+ Rondon-Clavo, Carlos and Sanada, Fumihiro and D'Amario,
+ Domenico and Rota, Marcello and del Monte, Federica and
+ Orlic, Donald and Tisdale, John and Leri, Annarosa and
+ Anversa, Piero},
+ Journal = {Circulation Research},
+ Year = {2010},
+ Number = {2},
+ Pages = {305-315},
+ Volume = {107},
+ Abstract = {Rationale: The ability of the human heart to regenerate
+ large quantities of myocytes remains controversial, and the
+ extent of myocyte renewal claimed by different laboratories
+ varies from none to nearly 20% per year.Objective: To
+ address this issue, we examined the percentage of myocytes,
+ endothelial cells, and fibroblasts labeled by
+ iododeoxyuridine in postmortem samples obtained from cancer
+ patients who received the thymidine analog for therapeutic
+ purposes. Additionally, the potential contribution of DNA
+ repair, polyploidy, and cell fusion to the measurement of
+ myocyte regeneration was determined.Methods and Results:
+ The fraction of myocytes labeled by iododeoxyuridine ranged
+ from 2.5% to 46%, and similar values were found in
+ fibroblasts and endothelial cells. An average 22%, 20%, and
+ 13% new myocytes, fibroblasts, and endothelial cells were
+ generated per year, suggesting that the lifespan of these
+ cells was approximately 4.5, 5, and 8 years, respectively.
+ The newly formed cardiac cells showed a fully
+ differentiated adult phenotype and did not express the
+ senescence-associated protein p16INK4a. Moreover,
+ measurements by confocal microscopy and flow cytometry
+ documented that the human heart is composed predominantly
+ of myocytes with 2n diploid DNA content and that tetraploid
+ and octaploid nuclei constitute only a small fraction of
+ the parenchymal cell pool. Importantly, DNA repair, ploidy
+ formation, and cell fusion were not implicated in the
+ assessment of myocyte regeneration.Conclusions: Our
+ findings indicate that the human heart has a significant
+ growth reserve and replaces its myocyte and nonmyocyte
+ compartment several times during the course of life.},
+ DOI = {10.1161/CIRCRESAHA.110.223024},
+ EPrint = {http://circres.ahajournals.org/content/107/2/305.full.pdf+html},
+ File = {kajstura10.pdf:kajstura10.pdf:PDF},
+ timestamp = {2015/09/23},
+ URL = {http://circres.ahajournals.org/content/107/2/305.abstract}
+}
+
+@Article{ kalman-bucy-61,
+ Author = {Kalman, R. and Bucy, R.},
+ Journal = {Trans. ASME J. Basic. Eng},
+ Pages = {95-108},
+ Title = {New results in linear filtering and prediction theory},
+ Volume = {83},
+ Year = {1961}
+}
+
+###Article{ kalman-bucy-61,
+ Author = {Kalman, R. and Bucy, R.},
+ Journal = {Trans. ASME J. Basic. Eng},
+ Pages = {95-108},
+ Title = {New results in linear filtering and prediction theory},
+ Volume = {83},
+ Year = {1961}
+}
+
+@Article{ kalnay_4-d-var_2007,
+ Title = {4-{{D}}-{{Var}} or Ensemble {{Kalman}} Filter?},
+ Volume = {59},
+ ISSN = {null},
+ URL = {https://doi.org/10.1111/j.1600-0870.2007.00261.x},
+ DOI = {10.1111/j.1600-0870.2007.00261.x},
+ Abstract = {We consider the relative advantages of two advanced data
+ assimilation systems, 4-D-Var and ensemble Kalman filter
+ (EnKF), currently in use or under consideration for
+ operational implementation.With the Lorenz model, we
+ explore the impact of tuning assimilation parameters such
+ as the assimilation window length and background error
+ covariance in 4-D-Var, variance inflation in EnKF, and the
+ effect of model errors and reduced observation coverage.
+ For short assimilation windows EnKF gives more accurate
+ analyses. Both systems reach similar levels of accuracy if
+ long windows are used for 4-D-Var. For infrequent
+ observations, when ensemble perturbations grow non-linearly
+ and become non-Gaussian, 4-D-Var attains lower errors than
+ EnKF. If the model is imperfect, the 4-D-Var with long
+ windows requires weak constraint. Similar results are
+ obtained with a quasi-geostrophic channel model. EnKF
+ experiments made with the primitive equations SPEEDY model
+ provide comparisons with 3-D-Var and guidance on model
+ error and âobservation localizationâ. Results obtained
+ using operational models and both simulated and real
+ observations indicate that currently EnKF is becoming
+ competitive with 4-D-Var, and that the experience acquired
+ with each of these methods can be used to improve the
+ other. A table summarizes the pros and cons of the two
+ methods.},
+ Number = {5},
+ JournalTitle = {Tellus A: Dynamic Meteorology and Oceanography},
+ URLDate = {2019-02-27},
+ Year = {2007-01-01},
+ Pages = {758-773},
+ Author = {Kalnay, Eugenia and Li, Hong and Miyoshi, Takemasa and
+ Yang, Shu-Chih and Ballabrera-Poy, Joaquim}
+}
+
+@Book{ kalnay_atmospheric_2003,
+ Title = {Atmospheric Modeling, Data Assimilation and
+ Predictability},
+ Publisher = {{Cambridge university press}},
+ Year = {2003},
+ Author = {Kalnay, Eugenia}
+}
+
+@Article{ kanzaki2010circ,
+ Title = {Three-dimensional architecture of cardiomyocytes and
+ connective tissue in human heart revealed by scanning
+ electron microscopy},
+ Author = {Kanzaki, Yumiko and Terasaki, Fumio and Okabe, Makoto and
+ Fujita, Shuichi and Katashima, Takashi and Otsuka, Kaoru
+ and Ishizaka, Nobukazu},
+ Journal = {Circulation},
+ Volume = {122},
+ Number = {19},
+ Pages = {1973--1974},
+ Year = {2010},
+ File = {:Kanzaki2010Circ.pdf:PDF},
+ Publisher = {Am Heart Assoc}
+}
+
+@Article{ karampinos2010intravoxel,
+ Title = {Intravoxel partially coherent motion technique:
+ characterization of the anisotropy of skeletal muscle
+ microvasculature},
+ Author = {Karampinos, Dimitrios C and King, Kevin F and Sutton,
+ Bradley P and Georgiadis, John G},
+ Journal = {Journal of Magnetic Resonance Imaging},
+ Volume = {31},
+ Number = {4},
+ Pages = {942--953},
+ Year = {2010},
+ Publisher = {Wiley Online Library}
+}
+
+@Article{ karcher-kolesnikov-andreev-02,
+ Author = {Karcher, C. and Kolesnikov, Y. and Andreev, O. and Thess,
+ A.},
+ code = {mhd41},
+ Journal = {Eur. J. Mech. B/Fluids},
+ Pages = {75-90},
+ Title = {Natural convection in a liquid metal heated from above and
+ influenced by a magnetic field},
+ Volume = {21},
+ Year = {2002}
+}
+
+###Article{ karcher-kolesnikov-andreev-02,
+ Author = {Karcher, C. and Kolesnikov, Y. and Andreev, O. and Thess,
+ A.},
+ code = {mhd41},
+ Journal = {Eur. J. Mech. B/Fluids},
+ Pages = {75-90},
+ Title = {Natural convection in a liquid metal heated from above and
+ influenced by a magnetic field},
+ Volume = {21},
+ Year = {2002}
+}
+
+@Article{ karlsen-risebro-01,
+ Author = {Karlsen, K. H. and Risebro, N. H.},
+ Journal = {$M^2$AN},
+ Number = {2},
+ Pages = {239-270},
+ Title = {On convergence of finite difference schemes for viscous
+ and inviscid conservation laws with rough coefficients},
+ Volume = {35},
+ Year = {2001}
+}
+
+###Article{ karlsen-risebro-01,
+ Author = {Karlsen, K. H. and Risebro, N. H.},
+ Journal = {$M^2$AN},
+ Number = {2},
+ Pages = {239-270},
+ Title = {On convergence of finite difference schemes for viscous
+ and inviscid conservation laws with rough coefficients},
+ Volume = {35},
+ Year = {2001}
+}
+
+@Article{ katayama2016diagnosis,
+ Title = {Diagnosis and management of patients with asymptomatic
+ severe aortic stenosis},
+ Author = {Katayama, Minako and Chaliki, Hari P},
+ Journal = {World journal of cardiology},
+ Volume = {8},
+ Number = {2},
+ Pages = {192},
+ Year = {2016},
+ Publisher = {Baishideng Publishing Group Inc}
+}
+
+@Article{ kato-84,
+ Author = {Kato, T.},
+ Journal = {Math. Zeit.},
+ Pages = {471-480},
+ Title = {Strong {$L^p$} solutions of the {Navier-Stokes} equations
+ in {$R^m$} with applications to weak solutions},
+ Volume = {187},
+ Year = {1984}
+}
+
+###Article{ kato-84,
+ Author = {Kato, T.},
+ Journal = {Math. Zeit.},
+ Pages = {471-480},
+ Title = {Strong {$L^p$} solutions of the {Navier-Stokes} equations
+ in {$R^m$} with applications to weak solutions},
+ Volume = {187},
+ Year = {1984}
+}
+
+@Book{ kelley-95,
+ Author = {Kelley},
+ Publisher = {SIAM},
+ Title = {Iterative methods for linear and nonlinear equations},
+ Year = {1995}
+}
+
+###Book{ kelley-95,
+ Author = {Kelley},
+ Publisher = {SIAM},
+ Title = {Iterative methods for linear and nonlinear equations},
+ Year = {1995}
+}
+
+@Article{ kerckhoffs2012mrc,
+ Title = {A single strain-based growth law predicts concentric and
+ eccentric cardiac growth during pressure and volume
+ overload },
+ Author = {Roy C.P. Kerckhoffs and Jeffrey H. Omens and Andrew D.
+ McCulloch},
+ Journal = {Mechanics Research Communications },
+ Year = {2012},
+ Note = {Recent Advances in the Biomechanics of Growth and
+ Remodeling },
+ Pages = {40 - 50},
+ Volume = {42},
+ Abstract = {Adult cardiac muscle adapts to mechanical changes in the
+ environment by growth and remodeling (G&R) via a
+ variety of mechanisms. Hypertrophy develops when the heart
+ is subjected to chronic mechanical overload. In ventricular
+ pressure overload (e.g. due to aortic stenosis) the heart
+ typically reacts by concentric hypertrophic growth,
+ characterized by wall thickening due to myocyte radial
+ growth when sarcomeres are added in parallel. In
+ ventricular volume overload, an increase in filling
+ pressure (e.g. due to mitral regurgitation) leads to
+ eccentric hypertrophy as myocytes grow axially by adding
+ sarcomeres in series leading to ventricular cavity
+ enlargement that is typically accompanied by some wall
+ thickening. The specific biomechanical stimuli that
+ stimulate different modes of ventricular hypertrophy are
+ still poorly understood. In a recent study, based on in
+ vitro studies in micropatterned myocyte cell cultures
+ subjected to stretch, we proposed that cardiac myocytes
+ grow longer to maintain a preferred sarcomere length in
+ response to increased fiber strain and grow thicker to
+ maintain interfilament lattice spacing in response to
+ increased cross-fiber strain. Here, we test whether this
+ growth law is able to predict concentric and eccentric
+ hypertrophy in response to aortic stenosis and mitral valve
+ regurgitation, respectively, in a computational model of
+ the adult canine heart coupled to a closed loop model of
+ circulatory hemodynamics. A non-linear finite element model
+ of the beating canine ventricles coupled to the circulation
+ was used. After inducing valve alterations, the ventricles
+ were allowed to adapt in shape in response to mechanical
+ stimuli over time. The proposed growth law was able to
+ reproduce major acute and chronic physiological responses
+ (structural and functional) when integrated with
+ comprehensive models of the pressure-overloaded and
+ volume-overloaded canine heart, coupled to a closed-loop
+ circulation. We conclude that strain-based biomechanical
+ stimuli can drive cardiac growth, including wall thickening
+ during pressure overload. },
+ DOI = {http://dx.doi.org/10.1016/j.mechrescom.2011.11.004},
+ File = {kerckhoffs12.pdf:kerckhoffs12.pdf:PDF},
+ ISSN = {0093-6413},
+ Keywords = {Cardiac growth},
+ timestamp = {2015/09/10},
+ URL = {http://www.sciencedirect.com/science/article/pii/S0093641311002163}
+}
+
+@InCollection{ kerckhoffs_effect_2007,
+ Title = {Effect of pacing site and infarct location on regional
+ mechanics and global hemodynamics in a model based study of
+ heart failure},
+ Author = {Kerckhoffs, R.C.P. and McCulloch, A.D. and Omens, J.H. and
+ Mulligan, L.J.},
+ BookTitle = {Functional Imaging and Modeling of the Heart},
+ Publisher = {Springer},
+ Year = {2007},
+ Pages = {350--360},
+ File = {Kerckhoffs_2007b.pdf:/home/hoermann/.zotero/zotero/krpbc0h6.default/zotero/storage/AZSS4J37/Kerckhoffs_2007b.pdf:application/pdf},
+ URL = {http://link.springer.com/chapter/10.1007/978-3-540-72907-5_36},
+ URLDate = {2014-11-27}
+}
+
+@Article{ kerckhoffs_effects_2009,
+ Title = {Effects of biventricular pacing and scar size in a
+ computational model of the failing heart with left bundle
+ branch block},
+ Author = {Kerckhoffs, Roy C.P. and McCulloch, A.D. and Omens, J.H.
+ and Mulligan, L.J.},
+ Journal = {Medical Image Analysis},
+ Year = {2009},
+ Month = apr,
+ Number = {2},
+ Pages = {362--369},
+ Volume = {13},
+ DOI = {10.1016/j.media.2008.06.013},
+ File = {Kerckhoffs2008.pdf:/home/hoermann/.zotero/zotero/krpbc0h6.default/zotero/storage/Z3WB8T3H/Kerckhoffs2008.pdf:application/pdf},
+ ISSN = {13618415},
+ Language = {en},
+ URL = {http://linkinghub.elsevier.com/retrieve/pii/S1361841508000698},
+ URLDate = {2014-11-27}
+}
+
+@Article{ keshavarz2015complianceaoc,
+ Title = {The role of aortic compliance in determination of
+ coarctation severity: lumped parameter modeling, in vitro
+ study and clinical evaluation},
+ Author = {Keshavarz-Motamed, Zahra and Edelman, Elazer R and
+ Motamed, Payam K and Garcia, Julio and Dahdah, Nagib and
+ Kadem, Lyes},
+ Journal = {Journal of biomechanics},
+ Volume = {48},
+ Number = {16},
+ Pages = {4229--4237},
+ Year = {2015},
+ Publisher = {Elsevier}
+}
+
+@PhdThesis{ kherief-84,
+ Annote = {mhd, existence, long time},
+ Author = {Kherief, K.},
+ code = {mhd31},
+ School = {Universit{\'e} de Paris {VII}},
+ Title = {Quelques propri{\'e}t{\'e}s des {\'e}quations de la
+ magn{\'e}tohydrodynamique stationnaires et d'{\'e}volution},
+ Type = {Th{\`e}se},
+ Year = {1984}
+}
+
+###PhdThesis{ kherief-84,
+ Annote = {mhd, existence, long time},
+ Author = {Kherief, K.},
+ code = {mhd31},
+ School = {Universit{\'e} de Paris {VII}},
+ Title = {Quelques propri{\'e}t{\'e}s des {\'e}quations de la
+ magn{\'e}tohydrodynamique stationnaires et d'{\'e}volution},
+ Type = {Th{\`e}se},
+ Year = {1984}
+}
+
+@Article{ kikuchi-93,
+ Author = {Kikuchi, F.},
+ Journal = {Sugaku expositions},
+ Month = {June},
+ Number = {1},
+ Pages = {332-345},
+ Title = {Numerical analysis electrostatic and magnetostatic
+ problem},
+ Volume = {6},
+ Year = {1993}
+}
+
+###Article{ kikuchi-93,
+ Author = {Kikuchi, F.},
+ Journal = {Sugaku expositions},
+ Month = {June},
+ Number = {1},
+ Pages = {332-345},
+ Title = {Numerical analysis electrostatic and magnetostatic
+ problem},
+ Volume = {6},
+ Year = {1993}
+}
+
+@Article{ kilner_helical_1993,
+ Title = {Helical and Retrograde Secondary Flow Patterns in the
+ Aortic Arch Studied by Three-Directional Magnetic Resonance
+ Velocity Mapping.},
+ Volume = {88},
+ Number = {5},
+ JournalTitle = {Circulation},
+ Year = {1993},
+ Pages = {2235--2247},
+ Author = {Kilner, Philip J. and Yang, Guang Z. and Mohiaddin, Raad
+ H. and Firmin, David N. and Longmore, Donald B.}
+}
+
+@Article{ kilner_imaging_2011,
+ langid = {english},
+ Title = {Imaging Congenital Heart Disease in Adults},
+ Volume = {84},
+ ISSN = {0007-1285, 1748-880X},
+ URL = {http://www.birpublications.org/doi/10.1259/bjr/74240815},
+ DOI = {10.1259/bjr/74240815},
+ Issue = {special\_issue\_3},
+ JournalTitle = {The British Journal of Radiology},
+ URLDate = {2019-02-09},
+ Year = {2011-12},
+ Pages = {S258-S268},
+ Author = {Kilner, P J}
+}
+
+@Article{ kim1995jacc,
+ Title = {Left ventricular blood flow patterns in normal subjects: a
+ quantitative analysis by three-dimensional magnetic
+ resonance velocity mapping.},
+ Author = {Kim, W. Y. and Walker, P. G. and Pedersen, E. M. and
+ Poulsen, J. K. and Oyre, S. and Houlind, K. and Yoganathan,
+ A. P.},
+ Journal = {J Am Coll Cardiol},
+ Year = {1995},
+ Month = {Jul},
+ Number = {1},
+ Pages = {224--238},
+ Volume = {26},
+ Abstract = {Magnetic resonance velocity mapping was used to
+ investigate the hypothesis of a vortex motion within the
+ left ventricle interacting with mitral valve motion and
+ inflow velocity.In vitro flow visualization studies have
+ suggested the presence of a large anterior vortex inside
+ the left ventricle during mitral inflow. However, to our
+ knowledge the occurrence of this phenomenon has not been
+ demonstrated in the human left ventricle.Magnetic resonance
+ velocity mapping was performed in 26 healthy volunteers
+ using a flow-adjusted gradient sequence for
+ three-dimensional flow velocity acquisition in the
+ long-axis plane of the left ventricle. By computer
+ processing, the flow vectors in the left ventricle were
+ visualized and animated dynamically.The early diastolic
+ mitral inflow was apically directed, and a large
+ counterclockwise anterior vortex was created within the
+ left ventricle shortly after the onset of the mid-diastolic
+ semiclosure of the anterior mitral leaflet. During
+ mid-diastolic diastasis, mitral inflow ceased until the
+ flow accelerated again at atrial systole. The final closure
+ of the mitral valve was preceded by a smaller vortex seen
+ at the tips of the mitral leaflets. At systolic ejection,
+ all flow vectors were directed toward the left ventricular
+ outflow tract. The anterior vortex had a radius of 1.62 +/-
+ 0.24 cm (mean +/- SD), and the average angular velocity
+ (i.e., the rotation of an element about the center of the
+ vortex within the central core) was 30.08 +/- 9.98
+ radians/s. The maximal kinetic energy of the anterior
+ vortex was 4.3 x 10(-4) +/- 7.1 x 10(-5) J.The hypothesis
+ of a diastolic vortex formation in the human left ventricle
+ was confirmed, and its close temporal relation to the
+ motion of the anterior mitral leaflet was demonstrated.},
+ Institution = {Department of Thoracic and Cardiovascular Surgery, Skejby
+ Sygehus, Aarhus University Hospital, Denmark.},
+ Keywords = {Adult; Blood Flow Velocity; Female; Heart Ventricles,
+ anatomy /&/ histology; Humans; Magnetic Resonance Imaging,
+ methods; Male; Mitral Valve, anatomy /&/
+ histology/physiology; Regional Blood Flow; Reproducibility
+ of Results; Ventricular Function},
+ Language = {eng},
+ medline-pst = {ppublish},
+ owner = {stoeckc},
+ pii = {073510979500141L},
+ pmid = {7797756},
+ timestamp = {2015.07.28}
+}
+
+@Article{ kim2009augmented,
+ Title = {Augmented Lagrangian method for constraining the shape of
+ velocity profiles at outlet boundaries for
+ three-dimensional finite element simulations of blood
+ flow},
+ Author = {Kim, HJ and Figueroa, CA and Hughes, TJR and Jansen, KE
+ and Taylor, CA},
+ Journal = {Comp. Methods Appl. Mech. Engrg.},
+ Volume = {198},
+ Number = {45},
+ Pages = {3551--3566},
+ Year = {2009},
+ Publisher = {Elsevier}
+}
+
+@Article{ kim2010abe,
+ Title = {Patient-Specific Modeling of Blood Flow and Pressure in
+ Human Coronary Arteries},
+ Author = {Kim, H. J. and Vignon-Clementel, I. E. and Coogan, J. S.
+ and Figueroa, C. A. and Jansen, K. E. and Taylor, C. A.},
+ Journal = {Annals of Biomedical Engineering},
+ Year = {2010},
+ Month = {Jun},
+ Number = {10},
+ Pages = {3195--3209},
+ Volume = {38},
+ DOI = {10.1007/s10439-010-0083-6},
+ File = {:Kim2010ABE.pdf:PDF},
+ ISSN = {1573-9686},
+ Keywords = {coronary flow},
+ Publisher = {Springer Science + Business Media},
+ URL = {http://dx.doi.org/10.1007/s10439-010-0083-6}
+}
+
+@Article{ kim_patient-specific_2010,
+ langid = {english},
+ Title = {Patient-{{Specific Modeling}} of {{Blood Flow}} and
+ {{Pressure}} in {{Human Coronary Arteries}}},
+ Volume = {38},
+ ISSN = {1573-9686},
+ URL = {https://doi.org/10.1007/s10439-010-0083-6},
+ DOI = {10.1007/s10439-010-0083-6},
+ Abstract = {Coronary flow is different from the flow in other parts of
+ the arterial system because it is influenced by the
+ contraction and relaxation of the heart. To model coronary
+ flow realistically, the compressive force of the heart
+ acting on the coronary vessels needs to be included. In
+ this study, we developed a method that predicts coronary
+ flow and pressure of three-dimensional epicardial coronary
+ arteries by considering models of the heart and arterial
+ system and the interactions between the two models. For
+ each coronary outlet, a lumped parameter coronary vascular
+ bed model was assigned to represent the impedance of the
+ downstream coronary vascular networks absent in the
+ computational domain. The intramyocardial pressure was
+ represented with either the left or right ventricular
+ pressure depending on the location of the coronary
+ arteries. The left and right ventricular pressure were
+ solved from the lumped parameter heart models coupled to a
+ closed loop system comprising a three-dimensional model of
+ the aorta, three-element Windkessel models of the rest of
+ the systemic circulation and the pulmonary circulation, and
+ lumped parameter models for the left and right sides of the
+ heart. The computed coronary flow and pressure and the
+ aortic flow and pressure waveforms were realistic as
+ compared to literature data.},
+ Number = {10},
+ JournalTitle = {Annals of Biomedical Engineering},
+ ShortJournal = {Ann Biomed Eng},
+ URLDate = {2019-03-09},
+ Year = {2010-10-01},
+ Pages = {3195-3209},
+ Author = {Kim, H. J. and Vignon-Clementel, I. E. and Coogan, J. S.
+ and Figueroa, C. A. and Jansen, K. E. and Taylor, C. A.}
+}
+
+@Article{ klein-95,
+ Author = {Klein, R.},
+ Journal = {J. Comput. Phys.},
+ Pages = {213-237},
+ Title = {Semi-{I}mplicit {E}xtension of a {G}odunov-{T}ype {S}cheme
+ {B}ased on {L}ow {M}ach {N}umber {A}symptotics {I}:
+ {O}ne-{D}imensional {F}low},
+ Volume = {121},
+ Year = {1995}
+}
+
+###Article{ klein-95,
+ Author = {Klein, R.},
+ Journal = {J. Comput. Phys.},
+ Pages = {213-237},
+ Title = {Semi-{I}mplicit {E}xtension of a {G}odunov-{T}ype {S}cheme
+ {B}ased on {L}ow {M}ach {N}umber {A}symptotics {I}:
+ {O}ne-{D}imensional {F}low},
+ Volume = {121},
+ Year = {1995}
+}
+
+@Article{ klein2010elastix,
+ Author = {Klein, S. and Staring, M. and Murphy, K. and Viergever,
+ M.A. and Pluim, J.P.W.},
+ Journal = {Medical Imaging, IEEE Transactions on},
+ Title = {elastix: A Toolbox for Intensity-Based Medical Image
+ Registration},
+ Year = {2010},
+ Month = {Jan},
+ Volume = {29},
+ Number = {1},
+ Pages = {196-205},
+ Keywords = {biomedical MRI;computerised tomography;image
+ registration;medical computing;medical image
+ processing;public domain software;automated data
+ processing;command-line interface;computed
+ tomography;elastix;intensity-based medical image
+ registration;magnetic resonance
+ imaging;scripting;Application software;Biomedical
+ imaging;Cost function;Image processing;Image
+ registration;Image segmentation;MONOS devices;Open source
+ software;Optimization methods;Spatial
+ resolution;elastix;image registration;medical imaging;open
+ source;software;Diagnostic Imaging;Humans;Image Processing,
+ Computer-Assisted;Models, Biological;Normal
+ Distribution;Software},
+ URL = {elastix.isi.uu.nl},
+ ISSN = {0278-0062}
+}
+
+@Article{ kleinstreuer-li-farber-07,
+ Author = {Kleinstreuer, C. and Li, Z. and Farber, M.A.},
+ Journal = {Annu Rev Biomed Eng.},
+ Pages = {169--204},
+ Title = {Fluid-structure interaction analyses of stented abdominal
+ aortic aneurysms},
+ Volume = {9},
+ Year = {2007}
+}
+
+###Article{ kleinstreuer-li-farber-07,
+ Author = {Kleinstreuer, C. and Li, Z. and Farber, M.A.},
+ Journal = {Annu Rev Biomed Eng.},
+ Pages = {169--204},
+ Title = {Fluid-structure interaction analyses of stented abdominal
+ aortic aneurysms},
+ Volume = {9},
+ Year = {2007}
+}
+
+@Article{ klepach2012mrc,
+ Title = {Growth and remodeling of the left ventricle: A case study
+ of myocardial infarction and surgical ventricular
+ restoration},
+ Author = {Klepach, D. and Lee, L. C. and Wenk, J. F. and Ratcliffe,
+ M. B. and Zohdi, T. I. and Navia, J. L. and Kassab, G. S.
+ and Kuhl, E. and Guccione, J. M.},
+ Journal = {Mechanics research communications},
+ Year = {2012},
+ Pages = {134--141},
+ Volume = {42},
+ File = {:klepach12.pdf:PDF},
+ Publisher = {Elsevier},
+ timestamp = {2014/11/27}
+}
+
+@InCollection{ knabner-igler-00,
+ Address = {Berlin},
+ Author = {Knabner, P. and Igler, B.},
+ BookTitle = {Lectures on applied mathematics (Munich, 1999)},
+ code = {por24},
+ Pages = {157--175},
+ Publisher = {Springer},
+ Title = {Structural identification of nonlinear coefficient
+ functions in transport processes through porous media},
+ Year = {2000}
+}
+
+###InCollection{ knabner-igler-00,
+ Address = {Berlin},
+ Author = {Knabner, P. and Igler, B.},
+ BookTitle = {Lectures on applied mathematics (Munich, 1999)},
+ code = {por24},
+ Pages = {157--175},
+ Publisher = {Springer},
+ Title = {Structural identification of nonlinear coefficient
+ functions in transport processes through porous media},
+ Year = {2000}
+}
+
+@Unpublished{ knoll-keyes,
+ Author = {Knoll, D.A. and Keyes, D.E.},
+ Note = {J. Comp. Phys. (in press)},
+ Title = {Jacobian-free {Newton-Krylov} methods: a surveys of
+ approaches and applications}
+}
+
+###Unpublished{ knoll-keyes,
+ Author = {Knoll, D.A. and Keyes, D.E.},
+ Note = {J. Comp. Phys. (in press)},
+ Title = {Jacobian-free {Newton-Krylov} methods: a surveys of
+ approaches and applications}
+}
+
+@Article{ koay2006unifying,
+ Author = {Cheng Guan Koay and Lin-Ching Chang and John D. Carew and
+ Carlo Pierpaoli and Peter J. Basser},
+ Title = {A unifying theoretical and algorithmic framework for least
+ squares methods of estimation in diffusion tensor imaging
+ },
+ Journal = {Journal of Magnetic Resonance },
+ Year = {2006},
+ Volume = {182},
+ Pages = {115 - 125},
+ Number = {1},
+ DOI = {http://dx.doi.org/10.1016/j.jmr.2006.06.020},
+ ISSN = {1090-7807}
+}
+
+@InProceedings{ kobuchi-ito-ogiwara-88,
+ Annote = {blood, red cell, rouleaux},
+ Author = {Kobuchi, Y. andIto, T. and Ogiwara, A. },
+ BookTitle = {Biomathematics and related computational problems (Naples,
+ 1987)},
+ code = {cel7},
+ Pages = {371-379},
+ Publisher = {Kluwer Acad. Publ., Dordrecht},
+ Title = {A model for rouleaux pattern formation of red blood cells.
+ Enumeration of absolutely stable patterns},
+ Year = {1988}
+}
+
+###InProceedings{ kobuchi-ito-ogiwara-88,
+ Annote = {blood, red cell, rouleaux},
+ Author = {Kobuchi, Y. andIto, T. and Ogiwara, A. },
+ BookTitle = {Biomathematics and related computational problems (Naples,
+ 1987)},
+ code = {cel7},
+ Pages = {371-379},
+ Publisher = {Kluwer Acad. Publ., Dordrecht},
+ Title = {A model for rouleaux pattern formation of red blood cells.
+ Enumeration of absolutely stable patterns},
+ Year = {1988}
+}
+
+@Article{ koh2007ajr,
+ Title = {Diffusion-Weighted {MRI} in the Body: Applications and
+ Challenges in Oncology},
+ Author = {Koh, Dow-Mu and Collins, David J.},
+ Journal = {American Journal of Roentgenology},
+ Year = {2007},
+ Number = {6},
+ Pages = {1622--1635},
+ Volume = {188},
+ Abstract = {ABSTRACT : OBJECTIVE. In this article, we present the
+ basic principles of diffusion-weighted imaging (DWI) that
+ can aid radiologists in the qualitative and quantitative
+ interpretation of DW images. However, a detailed discussion
+ of the physics of DWI is beyond the scope of this article.
+ A short discussion ensues on the technical aspects of
+ performing DWI in the body. The emerging applications of
+ DWI for tumor detection, tumor characterization,
+ distinguishing tumor tissue from nontumor tissue, and
+ monitoring and predicting treatment response are
+ highlighted. The challenges to widespread adoption of the
+ technique for cancer imaging in the body are
+ discussed.CONCLUSION. DWI derives its image contrast from
+ differences in the motion of water molecules between
+ tissues. Such imaging can be performed quickly without the
+ need for the administration of exogenous contrast medium.
+ The technique yields qualitative and quantitative
+ information that reflects changes at a cellular level and
+ provides unique insights about tumor cellularity and the
+ integrity of cell membranes. Recent advances enable the
+ technique to be widely applied for tumor evaluation in the
+ abdomen and pelvis and have led to the development of
+ whole-body DWI.},
+ DOI = {10.2214/AJR.06.1403},
+ ISSN = {0361-803X},
+ owner = {david},
+ ShortTitle = {Diffusion-Weighted {MRI} in the Body},
+ timestamp = {2015-05-28 17:38:10},
+ URL = {http://www.ajronline.org/doi/abs/10.2214/AJR.06.1403},
+ URLDate = {2015-05-28}
+}
+
+@Article{ kolodziej-98,
+ Author = {Kolodziej, J.A. and Dzi\c{e}cielak, R. and Ko{\'n}zak, Z.},
+ Journal = {Transport in Porous Media},
+ optpages = {1-19},
+ optvolume = {32},
+ Title = {Permeability Tensor for Heterogeneous Porous Medium of
+ Fibre Type},
+ Year = {1998}
+}
+
+###Article{ kolodziej-98,
+ Author = {Kolodziej, J.A. and Dzi\c{e}cielak, R. and Ko{\'n}zak, Z.},
+ Journal = {Transport in Porous Media},
+ optpages = {1-19},
+ optvolume = {32},
+ Title = {Permeability Tensor for Heterogeneous Porous Medium of
+ Fibre Type},
+ Year = {1998}
+}
+
+@Article{ koltukluoglu_boundary_2018,
+ langid = {english},
+ Title = {Boundary Control in Computational Haemodynamics},
+ Volume = {847},
+ ISSN = {0022-1120, 1469-7645},
+ URL = {https://www.cambridge.org/core/journals/journal-of-fluid-mechanics/article/boundary-control-in-computational-haemodynamics/9E02FA65754C0EB987E4B01593FD1437},
+ DOI = {10.1017/jfm.2018.329},
+ Abstract = {In this work, a data assimilation method is proposed
+ following an optimise-then-discretise approach, and is
+ applied in the context of computational haemodynamics. The
+ methodology aims to make use of phase-contrast magnetic
+ resonance imaging to perform optimal flow control in
+ computational fluid dynamic simulations. Flow matching
+ between observations and model predictions is performed in
+ luminal regions, excluding near-wall areas, improving the
+ near-wall flow reconstruction to enhance the estimation of
+ related quantities such as wall shear stresses. The
+ proposed approach remarkably improves the flow field at the
+ aortic root and reveals a great potential for predicting
+ clinically relevant haemodynamic phenomenology. This work
+ presents model validation against an analytical solution
+ using the standard 3-D HagenâPoiseuille flow, and
+ validation with real data involving the flow control
+ problem in a glass replica of a human aorta imaged with a
+ 3T magnetic resonance scanner. In vitro experiments consist
+ of both a numerically generated reference flow solution,
+ which is considered as the ground truth, as well as real
+ flow MRI data obtained from phase-contrast flow
+ acquisitions. The validation against the in vitro flow MRI
+ experiments is performed for different flow regimes and
+ model parameters including different mesh refinements.},
+ JournalTitle = {Journal of Fluid Mechanics},
+ URLDate = {2019-03-08},
+ Year = {2018-07},
+ Pages = {329-364},
+ Author = {Koltukluo{\u{g}}lu, Taha S. and Blanco, Pablo J.}
+}
+
+@PhdThesis{ koltukluoglu_fourier_2019,
+ langid = {english},
+ Location = {{Zürich, Switzerland}},
+ Title = {Fourier {{Spectral Data Assimilation}} in {{Computational
+ Haemodynamics}}},
+ Institution = {{ETH Zürich}},
+ Year = {2019},
+ Author = {Koltukluo{\u{g}}lu, TAHA S.}
+}
+
+@Article{ komamura1993ajp,
+ Title = {Exhaustion of Frank-Starling mechanism in conscious dogs
+ with heart failure},
+ Author = {Komamura, K. and Shannon, R. P. and Ihara, T. and Shen, Y.
+ T. and Mirsky, I. and Bishop, S. P. and Vatner, S. F.},
+ Journal = {American Journal of Physiology - Heart and Circulatory
+ Physiology},
+ Year = {1993},
+ Number = {4},
+ Pages = {H1119--H1131},
+ Volume = {265},
+ Abstract = {The goal of this study was to elucidate the ability of the
+ left ventricle to accommodate an increase in preload
+ (Frank-Starling mechanism) in the presence of congestive
+ heart failure (CHF) but in the absence of the complicating
+ effects of hypertrophy and fibrosis. To accomplish this,
+ the effects of volume loading were examined in eight
+ conscious dogs during the control state and after 3 wk of
+ right ventricular pacing (240 beats/min). CHF increased
+ heart rate (by 16 +/- 5 from 92 +/- 5 beats/min), left
+ ventricular (LV) end-diastolic pressure (by 17 +/- 2 from
+ 10 +/- 1 mmHg), and LV end-diastolic volume (EDV; by 23 +/-
+ 4 from 57 +/- 3 ml). Despite reduced LV ejection fraction
+ (from 54 +/- 3 to 31 +/- 3\%), there was no significant
+ change in cardiac output (2.5 +/- 0.3 l/min) compared with
+ control (2.7 +/- 0.2 l/min). Stroke volume was preserved
+ (control 19 +/- 2 ml; CHF 18 +/- 2 ml) at a constant heart
+ rate by a shift to the right in the relationship between LV
+ stroke volume and EDV, indicating the importance of chronic
+ ventricular dilatation in maintaining pump performance. In
+ the control state, acute volume load increased LV EDV (by
+ 17 +/- 2 ml) and stroke volume (by 11 +/- 2 ml), whereas in
+ CHF it did not increase LV EDV or stroke volume. Scanning
+ electron microscopy revealed areas of reduced collagen
+ weave pattern surrounding myofibers. Myocyte
+ cross-sectional area by transmission electron microscopy
+ was significantly reduced, and there were multiple
+ electron-dense expansions of the Z lines with disruption of
+ the normal lateral sarcomere alignment. These morphological
+ findings suggest that chronic ventricular dilatation
+ utilized in CHF results from myocyte stretch and
+ morphological intracellular rearrangement. Furthermore, the
+ failing heart cannot further augment stroke volume by
+ acutely increasing EDV in CHF, suggesting that the
+ Frank-Starling reserve is essentially exhausted.},
+ File = {komamura93.pdf:komamura93.pdf:PDF},
+ ISSN = {0363-6135},
+ Publisher = {American Physiological Society},
+ timestamp = {2015/09/17}
+}
+
+@Article{ konstam2011jacc,
+ Title = {Left ventricular remodeling in heart failure: current
+ concepts in clinical significance and assessment},
+ Author = {Konstam, Marvin A and Kramer, Daniel G and Patel, Ayan R
+ and Maron, Martin S and Udelson, James E},
+ Journal = {JACC: Cardiovascular Imaging},
+ Year = {2011},
+ Number = {1},
+ Pages = {98--108},
+ Volume = {4},
+ File = {:konstam11.pdf:PDF},
+ Publisher = {Journal of the American College of Cardiology},
+ timestamp = {2014/09/17}
+}
+
+@Article{ korakianitis-shi-06,
+ Title = {A concentrated parameter model for the human
+ cardiovascular system including heart valve dynamics and
+ atrioventricular interaction},
+ Author = {Korakianitis, T. and Shi, Y.},
+ Year = {2006},
+ Journal = {Medical Engineering \& Physics},
+ Volume = {28},
+ Pages = {613--628}
+}
+
+###Article{ korakianitis-shi-06,
+ Title = {A concentrated parameter model for the human
+ cardiovascular system including heart valve dynamics and
+ atrioventricular interaction},
+ Author = {Korakianitis, T. and Shi, Y.},
+ Year = {2006},
+ Journal = {Medical Engineering \& Physics},
+ Volume = {28},
+ Pages = {613--628}
+}
+
+@Article{ koutsourelakis2009accurate,
+ Title = {Accurate uncertainty quantification using inaccurate
+ computational models},
+ Author = {Koutsourelakis, Phaedon-Stelios},
+ Journal = {SIAM Journal on Scientific Computing},
+ Volume = {31},
+ Number = {5},
+ Pages = {3274--3300},
+ Year = {2009},
+ Publisher = {SIAM}
+}
+
+@Article{ kozlov-89,
+ Author = {Kozlov, S.},
+ Journal = {Russian Math. Surveys},
+ Pages = {79-120},
+ Title = {Geometric aspects of homogenization},
+ Volume = {40},
+ Year = {1989}
+}
+
+###Article{ kozlov-89,
+ Author = {Kozlov, S.},
+ Journal = {Russian Math. Surveys},
+ Pages = {79-120},
+ Title = {Geometric aspects of homogenization},
+ Volume = {40},
+ Year = {1989}
+}
+
+@Article{ krittian2012finite,
+ Title = {A finite-element approach to the direct computation of
+ relative cardiovascular pressure from time-resolved {MR}
+ velocity data},
+ Author = {Krittian, Sebastian BS and Lamata, Pablo and Michler,
+ Christian and Nordsletten, David A and Bock, Jelena and
+ Bradley, Chris P and Pitcher, Alex and Kilner, Philip J and
+ Markl, Michael and Smith, Nic P},
+ Journal = {Medical image analysis},
+ Volume = {16},
+ Number = {5},
+ Pages = {1029--1037},
+ Year = {2012},
+ Publisher = {Elsevier}
+}
+
+###Article{ krittian2012finite,
+ Title = {A finite-element approach to the direct computation of
+ relative cardiovascular pressure from time-resolved {MR}
+ velocity data},
+ Author = {Krittian, Sebastian BS and Lamata, Pablo and Michler,
+ Christian and Nordsletten, David A and Bock, Jelena and
+ Bradley, Chris P and Pitcher, Alex and Kilner, Philip J and
+ Markl, Michael and Smith, Nic P},
+ Journal = {Medical image analysis},
+ Volume = {16},
+ Number = {5},
+ Pages = {1029--1037},
+ Year = {2012},
+ Publisher = {Elsevier}
+}
+
+@Article{ krittian_finite-element_2012,
+ Title = {A Finite-Element Approach to the Direct Computation of
+ Relative Cardiovascular Pressure from Time-Resolved {{MR}}
+ Velocity Data},
+ Volume = {16},
+ ISSN = {1361-8415},
+ URL = {http://www.sciencedirect.com/science/article/pii/S1361841512000497},
+ DOI = {10.1016/j.media.2012.04.003},
+ Abstract = {The evaluation of cardiovascular velocities, their changes
+ through the cardiac cycle and the consequent pressure
+ gradients has the capacity to improve understanding of
+ subject-specific blood flow in relation to adjacent soft
+ tissue movements. Magnetic resonance time-resolved 3D phase
+ contrast velocity acquisitions (4D flow) represent an
+ emerging technology capable of measuring the cyclic changes
+ of large scale, multi-directional, subject-specific blood
+ flow. A subsequent evaluation of pressure differences in
+ enclosed vascular compartments is a further step which is
+ currently not directly available from such data. The focus
+ of this work is to address this deficiency through the
+ development of a novel simulation workflow for the direct
+ computation of relative cardiovascular pressure fields.
+ Input information is provided by enhanced 4D flow data and
+ derived MR domain masking. The underlying methodology shows
+ numerical advantages in terms of robustness, global domain
+ composition, the isolation of local fluid compartments and
+ a treatment of boundary conditions. This approach is
+ demonstrated across a range of validation examples which
+ are compared with analytic solutions. Four subject-specific
+ test cases are subsequently run, showing good agreement
+ with previously published calculations of intra-vascular
+ pressure differences. The computational engine presented in
+ this work contributes to non-invasive access to relative
+ pressure fields, incorporates the effects of both blood
+ flow acceleration and viscous dissipation, and enables
+ enhanced evaluation of cardiovascular blood flow.},
+ Number = {5},
+ JournalTitle = {Medical Image Analysis},
+ ShortJournal = {Medical Image Analysis},
+ URLDate = {2016-10-08},
+ Year = {2012-07},
+ Pages = {1029-1037},
+ Author = {Krittian, Sebastian B. S. and Lamata, Pablo and Michler,
+ Christian and Nordsletten, David A. and Bock, Jelena and
+ Bradley, Chris P. and Pitcher, Alex and Kilner, Philip J.
+ and Markl, Michael and Smith, Nic P.}
+}
+
+@Article{ kroon2007jtb,
+ Title = {A model for saccular cerebral aneurysm growth by collagen
+ fibre remodelling },
+ Author = {Martin Kroon and Gerhard A. Holzapfel},
+ Journal = {Journal of Theoretical Biology },
+ Year = {2007},
+ Number = {4},
+ Pages = {775 - 787},
+ Volume = {247},
+ Abstract = {The first structural model for saccular cerebral aneurysm
+ growth is proposed. It is assumed that the development of
+ the aneurysm is accompanied by a loss of the media, and
+ that only collagen fibres provide load-bearing capacity to
+ the aneurysm wall. The aneurysm is modelled as an
+ axisymmetric multi-layered membrane, exposed to an
+ inflation pressure. Each layer is characterized by an
+ orientation angle, which changes between different layers.
+ The collagen fibres and fibroblasts within a specific layer
+ are perfectly aligned. The growth and the morphological
+ changes of the aneurysm are accomplished by the turnover of
+ collagen. Fibroblasts are responsible for collagen
+ production, and the related deformations are assumed to
+ govern the collagen production rate. There are four key
+ parameters in the model: a normalized pressure, the number
+ of layers in the wall, an exponent in the collagen mass
+ production rate law, and the pre-stretch under which the
+ collagen is deposited. The influence of the model
+ parameters on the aneurysmal response is investigated, and
+ a stability analysis is performed. The model is able to
+ predict clinical observations and mechanical test results,
+ for example, in terms of predicted aneurysm size, shape,
+ wall stress and wall thickness. },
+ DOI = {http://dx.doi.org/10.1016/j.jtbi.2007.03.009},
+ File = {kroon07.pdf:kroon07.pdf:PDF},
+ ISSN = {0022-5193},
+ Keywords = {Aneurysm},
+ timestamp = {2015/09/22},
+ URL = {http://www.sciencedirect.com/science/article/pii/S0022519307001142}
+}
+
+@Article{ kroon2009bmm,
+ Title = {Computational modeling of volumetric soft tissue growth:
+ application to the cardiac left ventricle},
+ Author = {Kroon, Wilco and Delhaas, Tammo and Arts, Theo and
+ Bovendeerd, Peter},
+ Journal = {Biomechanics and Modeling in Mechanobiology},
+ Year = {2009},
+ Number = {4},
+ Pages = {301-309},
+ Volume = {8},
+ DOI = {10.1007/s10237-008-0136-z},
+ File = {kroon09b.pdf:kroon09b.pdf:PDF},
+ ISSN = {1617-7959},
+ Keywords = {Cardiac mechanics; Remodeling; Adaptation; Finite element
+ method},
+ Language = {English},
+ Publisher = {Springer-Verlag},
+ timestamp = {2015/09/23},
+ URL = {http://dx.doi.org/10.1007/s10237-008-0136-z}
+}
+
+@Article{ kroon2009jtb,
+ Title = {A theoretical model for fibroblast-controlled growth of
+ saccular cerebral aneurysms },
+ Author = {Martin Kroon and Gerhard A. Holzapfel},
+ Journal = {Journal of Theoretical Biology },
+ Year = {2009},
+ Number = {1},
+ Pages = {73 - 83},
+ Volume = {257},
+ Abstract = {A new theoretical model for the growth of saccular
+ cerebral aneurysms is proposed by extending the recent
+ constitutive framework of Kroon and Holzapfel [2007a. A
+ model for saccular cerebral aneurysm growth by collagen
+ fibre remodelling. J. Theor. Biol. 247, 775?787]. The
+ continuous turnover of collagen is taken to be the driving
+ mechanism in aneurysmal growth. The collagen production
+ rate depends on the magnitude of the cyclic deformation of
+ fibroblasts, caused by the pulsating blood pressure during
+ the cardiac cycle. The volume density of fibroblasts in the
+ aneurysmal tissue is taken to be constant throughout the
+ growth process. The growth model is assessed by considering
+ the inflation of an axisymmetric membranous piece of
+ aneurysmal tissue, with material characteristics
+ representative of a cerebral aneurysm. The diastolic and
+ systolic states of the aneurysm are computed, together with
+ its load-free state. It turns out that the value of
+ collagen pre-stretch, that determines growth speed and
+ stability of the aneurysm, is of pivotal importance. The
+ model is able to predict aneurysms with typical berry-like
+ shapes observed clinically, and the predicted wall stresses
+ correlate well with the experimentally obtained ultimate
+ stresses of this type of tissue. The model predicts that
+ aneurysms should fail when reaching a size of about 1.2?3.6
+ mm, which is smaller than what has been clinically
+ observed. With some refinements, the model may, however, be
+ used to predict future growth of diagnosed aneurysms. },
+ DOI = {http://dx.doi.org/10.1016/j.jtbi.2008.10.021},
+ File = {kroon09.pdf:kroon09.pdf:PDF},
+ ISSN = {0022-5193},
+ Keywords = {Aneurysm},
+ timestamp = {2015/09/22},
+ URL = {http://www.sciencedirect.com/science/article/pii/S0022519308005602}
+}
+
+@Article{ kroon2009mia,
+ Title = {Computational analysis of the myocardial structure:
+ Adaptation of cardiac myofiber orientations through
+ deformation },
+ Author = {Wilco Kroon and Tammo Delhaas and Peter Bovendeerd and
+ Theo Arts},
+ Journal = {Medical Image Analysis },
+ Year = {2009},
+ Note = {Includes Special Section on Functional Imaging and
+ Modelling of the Heart },
+ Number = {2},
+ Pages = {346 - 353},
+ Volume = {13},
+ Abstract = {Deformation and structure of the cardiac wall can be
+ assessed non-invasively by imaging techniques such as
+ magnetic resonance imaging. Understanding the
+ (patho-)physiology that underlies the observed deformation
+ and structure is critical for clinical diagnosis. However,
+ much about the genesis of deformation and structure is
+ unknown. In the present computational model study, we
+ hypothesize that myofibers locally adapt their orientation
+ to achieve minimal fiber-cross fiber shear strain during
+ the cardiac cycle. This hypothesis was tested in a 3D
+ finite element model of left ventricular (LV) mechanics by
+ computation of tissue deformations and subsequent
+ adaptation of initial myofiber orientations towards those
+ in the deformed tissue. As a consequence of adaptation,
+ local tissue peak stress, strain during ejection and stroke
+ work density were all found to increase by at least 10%, as
+ well as to become 50% more homogeneous throughout the wall.
+ Global \{LV\} work (peak systolic pressure, stroke volume
+ and stroke work) increased significantly as well (>9%).
+ The model-predicted myofiber orientations were found to be
+ similar to those in experiments. To the best of our
+ knowledge the presented model is the first that is able to
+ simultaneously predict a realistic myocardial structure as
+ well as to account for the experimentally observed
+ homogeneity in local mechanics. },
+ DOI = {http://dx.doi.org/10.1016/j.media.2008.06.015},
+ File = {kroon09a.pdf:kroon09a.pdf:PDF},
+ ISSN = {1361-8415},
+ Keywords = {Cardiac mechanics},
+ timestamp = {2015/09/22},
+ URL = {http://www.sciencedirect.com/science/article/pii/S1361841508000686}
+}
+
+@Article{ kroon2010jmps,
+ Title = {A continuum mechanics framework and a constitutive model
+ for remodelling of collagen gels and collagenous tissues },
+ Author = {Martin Kroon},
+ Journal = {Journal of the Mechanics and Physics of Solids },
+ Year = {2010},
+ Number = {6},
+ Pages = {918 - 933},
+ Volume = {58},
+ Abstract = {Collagen is a very important protein of the human body and
+ is responsible for the structural stability of many body
+ components. Furthermore, collagen fibre networks are able
+ to grow and remodel themselves, which enables them to
+ adjust to varying physiological conditions. This
+ remodelling is accomplished by fibre-producing cells, such
+ as fibroblasts. The ability to adjust to new physiological
+ conditions is very important, for example in wound healing.
+ In the present paper, a theoretical framework for modelling
+ collagenous tissues and collagen gels is proposed.
+ Continuum mechanics is employed to describe the kinematics
+ of the collagen, and affine deformations of fibres are
+ assumed. Biological soft tissues can be approximated as
+ being hyperelastic, and the constitutive model for the
+ collagen fabric is therefore formulated in terms of a
+ strain energy function. This strain energy function
+ includes a density function that describes the distribution
+ of the collagen fibre orientation. The density function
+ evolves according to an evolution law, where fibres tend to
+ reorient towards the direction of maximum Cauchy stress.
+ The remodelling of the collagen network is also assumed to
+ include a pre-stretching of collagen fibres, accomplished
+ by fibroblasts. The theoretical framework is applied to
+ experiments performed on collagen gels, where gels were
+ exposed to remodelling under both biaxial and uniaxial
+ constraints. The proposed model was able to predict both
+ the resulting collagen distribution and the resulting
+ stress?strain relationships obtained for the remodelled
+ collagen gels. The influence of the most important model
+ parameters is demonstrated, and it appears that there is a
+ fairly unique set of model parameters that gives an optimal
+ fit to the experimental data. },
+ DOI = {http://dx.doi.org/10.1016/j.jmps.2010.03.005},
+ ISSN = {0022-5096},
+ Keywords = {Collagen},
+ timestamp = {2015/09/22},
+ URL = {http://www.sciencedirect.com/science/article/pii/S0022509610000530}
+}
+
+@Article{ kruzhkov-70,
+ Author = {Kruzhkov, S.},
+ Journal = { Mat. Sbornik},
+ Note = {Engl. Transl. {\em Math. USSR Sb.} {\bf 10} (1970),
+ 217--273},
+ Pages = {228-255},
+ Title = {First order quasilinear equations with several space
+ variables},
+ Volume = {123},
+ Year = {1970}
+}
+
+###Article{ kruzhkov-70,
+ Author = {Kruzhkov, S.},
+ Journal = { Mat. Sbornik},
+ Note = {Engl. Transl. {\em Math. USSR Sb.} {\bf 10} (1970),
+ 217--273},
+ Pages = {228-255},
+ Title = {First order quasilinear equations with several space
+ variables},
+ Volume = {123},
+ Year = {1970}
+}
+
+@Article{ ku_blood_1997,
+ Title = {Blood Flow in Arteries},
+ Author = {Ku, David N.},
+ Year = {1997},
+ Volume = {29},
+ Pages = {399--434},
+ Journal = {Annu Rev Fluid Mech},
+ Number = {1}
+}
+
+###Article{ ku_blood_1997,
+ Title = {Blood Flow in Arteries},
+ Volume = {29},
+ URL = {http://www.annualreviews.org/doi/abs/10.1146/annurev.fluid.29.1.399},
+ Number = {1},
+ JournalTitle = {Annual review of fluid mechanics},
+ URLDate = {2017-10-12},
+ Year = {1997},
+ Pages = {399--434},
+ Author = {Ku, David N.}
+}
+
+@Article{ kuethe1989physrev,
+ Title = {Measuring distributions of diffusivity in turbulent fluids
+ with magnetic-resonance imaging},
+ Author = {Kuethe, Dean O.},
+ Journal = {Physical Review A},
+ Year = {1989},
+ Month = oct,
+ Number = {8},
+ Pages = {4542--4551},
+ Volume = {40},
+ Abstract = {This paper describes a method for measuring distributions
+ of turbulent diffusivity in less than an hour. The
+ measurement is rapid enough to aid in designing devices
+ that make use of the turbulent diffusion of mass, heat, or
+ momentum. It may be useful as a measurement of the degree
+ of turbulence in the blood of patients with cardiovascular
+ diseases. It consists of subtracting the natural logarithms
+ of the pixel values of a magnetic-resonance image of
+ turbulent fluid from those of stationary fluid. The pixel
+ values of the resulting image are multiplied by a constant
+ to yield diffusivities. The accuracy of the measurement is
+ within the range of diffusivities (1) upstream as far as
+ the speed of the fluid multiplied by the time TE between
+ exciting the spin system and recording the signal, (2) in
+ the direction of the gradient of diffusivity as far as TE
+ multiplied by 5 times the gradient of the diffusivity, and
+ (3) in the direction of the phase-encoding magnetic field
+ gradient as far as the negative of the component of
+ velocity in the phase-encoding direction multiplied by the
+ time between phase encoding and recording the signal. In a
+ 32{\texttimes}32-cm2 image of a jet of water with a nozzle
+ velocity of 4.5 m s-1 and Reynolds number of 18 000, made
+ with a TE of 15 ms, the distance of (1) ranged from 0 to
+ 6.7 cm, of (2) ranged from 0 to 0.3 cm, and of (3) ranged
+ from 0 to 0.4 cm. These distances are bounds; the actual
+ spatial misregistration was less. The signal-to-noise ratio
+ ranged from 10 to 15 for diffusivities from 0.02 to 0.7 cm2
+ s-1. .AE},
+ DOI = {10.1103/PhysRevA.40.4542},
+ owner = {david},
+ timestamp = {2015-05-12 15:34:08},
+ URL = {http://link.aps.org/doi/10.1103/PhysRevA.40.4542},
+ URLDate = {2015-05-12}
+}
+
+@Article{ kung2011jmri,
+ Title = {The presence of two local myocardial sheet populations
+ confirmed by diffusion tensor MRI and histological
+ validation.},
+ Author = {Kung, Geoffrey L. and Nguyen, Tom C. and Itoh, Aki and
+ Skare, Stefan and Ingels, Jr, Neil B and Miller, D Craig
+ and Ennis, Daniel B.},
+ Journal = {J Magn Reson Imaging},
+ Year = {2011},
+ Month = {Nov},
+ Number = {5},
+ Pages = {1080--1091},
+ Volume = {34},
+ Abstract = {To establish the correspondence between the two
+ histologically observable and diffusion tensor MRI (DTMRI)
+ measurements of myolaminae orientation for the first time
+ and show that single myolaminar orientations observed in
+ local histology may result from histological artifact.DTMRI
+ was performed on six sheep left ventricles (LV), then
+ corresponding direct histological transmural measurements
+ were made within the anterobasal and lateral-equatorial LV.
+ Secondary and tertiary eigenvectors of the diffusion tensor
+ were compared with each of the two locally observable sheet
+ orientations from histology. Diffusion tensor invariants
+ were calculated to compare differences in microstructural
+ diffusive properties between histological locations with
+ one observable sheet population and two observable sheet
+ populations.Mean difference ± 1SD between DTMRI and
+ histology measured sheet angles was 8° ± 27°. Diffusion
+ tensor invariants showed no significant differences between
+ histological locations with one observable sheet population
+ and locations with two observable sheet populations.DTMRI
+ measurements of myolaminae orientations derived from the
+ secondary and tertiary eigenvectors correspond to each of
+ the two local myolaminae orientations observed in
+ histology. Two local sheet populations may exist throughout
+ LV myocardium, and one local sheet population observed in
+ histology may be a result of preparation artifact.},
+ DOI = {10.1002/jmri.22725},
+ Institution = {Department of Radiological Sciences, University of
+ California, Los Angeles, California 90024, USA.},
+ Keywords = {Algorithms; Animals; Artifacts; Diffusion Magnetic
+ Resonance Imaging, methods; Heart Ventricles, pathology;
+ Image Processing, Computer-Assisted; Male; Models,
+ Anatomic; Models, Statistical; Myocardium, pathology;
+ Reproducibility of Results; Sheep},
+ Language = {eng},
+ medline-pst = {ppublish},
+ owner = {stoeckc},
+ pmid = {21932362},
+ timestamp = {2015.07.24},
+ URL = {http://dx.doi.org/10.1002/jmri.22725}
+}
+
+@Article{ kung_predictive_2013,
+ Title = {Predictive Modeling of the Virtual {{Hemi}}-{{Fontan}}
+ Operation for Second Stage Single Ventricle Palliation:
+ {{Two}} Patient-Specific Cases},
+ Volume = {46},
+ ISSN = {0021-9290},
+ URL = {http://www.sciencedirect.com/science/article/pii/S0021929012006306},
+ DOI = {10.1016/j.jbiomech.2012.10.023},
+ ShortTitle = {Predictive Modeling of the Virtual {{Hemi}}-{{Fontan}}
+ Operation for Second Stage Single Ventricle Palliation},
+ Abstract = {Single ventricle hearts are congenital cardiovascular
+ defects in which the heart has only one functional pumping
+ chamber. The treatment for these conditions typically
+ requires a three-staged operative process where Stage 1 is
+ typically achieved by a shunt between the systemic and
+ pulmonary arteries, and Stage 2 by connecting the superior
+ venous return to the pulmonary circulation. Surgically, the
+ Stage 2 circulation can be achieved through a procedure
+ called the Hemi-Fontan, which reconstructs the right atrium
+ and pulmonary artery to allow for an enlarged confluence
+ with the superior vena cava. Based on pre-operative data
+ obtained from two patients prior to Stage 2 surgery, we
+ developed two patient-specific multi-scale computational
+ models, each including the 3D geometrical model of the
+ surgical junction constructed from magnetic resonance
+ imaging, and a closed-loop systemic lumped-parameter
+ network derived from clinical measurements. âVirtualâ
+ Hemi-Fontan surgery was performed on the 3D model with
+ guidance from clinical surgeons, and a corresponding
+ multi-scale simulation predicts the patient's
+ post-operative hemodynamic and physiologic conditions. For
+ each patient, a post-operative active scenario with an
+ increase in the heart rate (HR) and a decrease in the
+ pulmonary and systemic vascular resistance (PVR and SVR)
+ was also performed. Results between the baseline and this
+ âactiveâ state were compared to evaluate the
+ hemodynamic and physiologic implications of changing
+ conditions. Simulation results revealed a characteristic
+ swirling vortex in the Hemi-Fontan in both patients, with
+ flow hugging the wall along the SVC to Hemi-Fontan
+ confluence. One patient model had higher levels of
+ swirling, recirculation, and flow stagnation. However, in
+ both models, the power loss within the surgical junction
+ was less than 13\% of the total power loss in the pulmonary
+ circulation, and less than 2\% of the total ventricular
+ power. This implies little impact of the surgical junction
+ geometry on the SVC pressure, cardiac output, and other
+ systemic parameters. In contrast, varying HR, PVR, and SVR
+ led to significant changes in theses clinically relevant
+ global parameters. Adopting a work-flow of customized
+ virtual planning of the Hemi-Fontan procedure with
+ patient-specific data, this study demonstrates the ability
+ of multi-scale modeling to reproduce patient specific flow
+ conditions under differing physiological states. Results
+ demonstrate that the same operation performed in two
+ different patients can lead to different hemodynamic
+ characteristics, and that modeling can be used to uncover
+ physiologic changes associated with different clinical
+ conditions.},
+ Number = {2},
+ JournalTitle = {Journal of Biomechanics},
+ ShortJournal = {Journal of Biomechanics},
+ Series = {Special {{Issue}}: {{Biofluid Mechanics}}},
+ URLDate = {2019-03-09},
+ Year = {2013-01-18},
+ Pages = {423-429},
+ Author = {Kung, Ethan and Baretta, Alessia and Baker, Catriona and
+ Arbia, Gregory and Biglino, Giovanni and Corsini, Chiara
+ and Schievano, Silvia and Vignon-Clementel, Irene E. and
+ Dubini, Gabriele and Pennati, Giancarlo and Taylor, Andrew
+ and Dorfman, Adam and Hlavacek, Anthony M. and Marsden,
+ Alison L. and Hsia, Tain-Yen and Migliavacca, Francesco}
+}
+
+@Article{ kunisch-volkwein-fluids-03,
+ jstor_articletype={research-article},
+ Title = {Galerkin Proper Orthogonal Decomposition Methods for a
+ General Equation in Fluid Dynamics},
+ Author = {Kunisch, K. and Volkwein, S.},
+ Journal = {SIAM Journal on Numerical Analysis},
+ jstor_issuetitle={},
+ Volume = {40},
+ Number = {2},
+ jstor_formatteddate={2003},
+ Pages = {pp. 492-515},
+ ISSN = {00361429},
+ Abstract = {Error estimates for Galerkin proper orthogonal
+ decomposition (POD) methods for nonlinear parabolic systems
+ arising in fluid dynamics are proved. For the time
+ integration the backward Euler scheme is considered. The
+ asymptotic estimates involve the singular values of the POD
+ snapshot set and the grid-structure of the time
+ discretization as well as the snapshot locations.},
+ Language = {English},
+ Year = {2003},
+ Publisher = {Society for Industrial and Applied Mathematics},
+ copyright = {Copyright © 2003 Society for Industrial and Applied
+ Mathematics}
+}
+
+###Article{ kunisch-volkwein-fluids-03,
+ jstor_articletype={research-article},
+ Title = {Galerkin Proper Orthogonal Decomposition Methods for a
+ General Equation in Fluid Dynamics},
+ Author = {Kunisch, K. and Volkwein, S.},
+ Journal = {SIAM Journal on Numerical Analysis},
+ jstor_issuetitle={},
+ Volume = {40},
+ Number = {2},
+ jstor_formatteddate={2003},
+ Pages = {pp. 492-515},
+ URL = {http://www.jstor.org/stable/4100966},
+ ISSN = {00361429},
+ Abstract = {Error estimates for Galerkin proper orthogonal
+ decomposition (POD) methods for nonlinear parabolic systems
+ arising in fluid dynamics are proved. For the time
+ integration the backward Euler scheme is considered. The
+ asymptotic estimates involve the singular values of the POD
+ snapshot set and the grid-structure of the time
+ discretization as well as the snapshot locations.},
+ Language = {English},
+ Year = {2003},
+ Publisher = {Society for Industrial and Applied Mathematics},
+ copyright = {Copyright © 2003 Society for Industrial and Applied
+ Mathematics}
+}
+
+@Article{ kuttler-wall-08,
+ Author = {K\"uttler, U. and Wall, W.A.},
+ Journal = {Comput. Mech.},
+ Number = {1},
+ Pages = {61--72},
+ Title = {Fixed-point fluid-structure interaction solvers with
+ dynamic relaxation},
+ Volume = {43},
+ Year = {2008}
+}
+
+###Article{ kuttler-wall-08,
+ Author = {K\"uttler, U. and Wall, W.A.},
+ Journal = {Comput. Mech.},
+ Number = {1},
+ Pages = {61--72},
+ Title = {Fixed-point fluid-structure interaction solvers with
+ dynamic relaxation},
+ Volume = {43},
+ Year = {2008}
+}
+
+@Article{ kuwabara-59,
+ Author = {Kuwabara, S.},
+ Journal = {J. Phys. Soc. Japan},
+ Pages = {527-532},
+ Title = {The force experienced by randomly distributed parallel
+ circilar cylinders or spheres in a viscous flow at small
+ Reynolds number},
+ Volume = {14},
+ Year = {1959}
+}
+
+###Article{ kuwabara-59,
+ Author = {Kuwabara, S.},
+ Journal = {J. Phys. Soc. Japan},
+ Pages = {527-532},
+ Title = {The force experienced by randomly distributed parallel
+ circilar cylinders or spheres in a viscous flow at small
+ Reynolds number},
+ Volume = {14},
+ Year = {1959}
+}
+
+@Article{ labrosse-etal-09,
+ Author = {Labrosse, M.R. and Beller, C.J. and Mesana, T. and Veinot,
+ J.P.},
+ Title = {Mechanical behavior of human aortas: Experiments, material
+ constants and 3-D finite element modeling including
+ residual stress.},
+ Journal = {J Biomech},
+ Volume = {42},
+ Year = {2009},
+ Number = {8},
+ Pages = {996-1004},
+ pubmedid = {19345356},
+ ISSN = {1873-2380}
+}
+
+###Article{ labrosse-etal-09,
+ Author = {Labrosse, M.R. and Beller, C.J. and Mesana, T. and Veinot,
+ J.P.},
+ Title = {Mechanical behavior of human aortas: Experiments, material
+ constants and 3-D finite element modeling including
+ residual stress.},
+ Journal = {J Biomech},
+ Volume = {42},
+ Year = {2009},
+ Number = {8},
+ Pages = {996-1004},
+ URL = {http://www.biomedsearch.com/nih/Mechanical-behavior-human-aortas-Experiments/19345356.html},
+ pubmedid = {19345356},
+ ISSN = {1873-2380}
+}
+
+@Article{ labrosse2006geometric,
+ Title = {Geometric modeling of functional trileaflet aortic valves:
+ development and clinical applications},
+ Author = {Labrosse, M. and Beller, C. and Robicsek, F. and
+ Thubrikar, M.},
+ Journal = {Journal of biomechanics},
+ Volume = {39},
+ Number = {14},
+ Pages = {2665--2672},
+ Year = {2006},
+ Publisher = {Elsevier}
+}
+
+@Article{ lacamera-ziegler-kozarek-92,
+ Author = {LaCamera, A.F. and Ziegler, D.P. and Kozarek, R.L.},
+ Journal = {Light Metals},
+ Pages = {1179-1186},
+ Title = {Magnetohydrodynamics in the {Hall-H{\'e}roult} process, an
+ overview},
+ Year = {1992}
+}
+
+###Article{ lacamera-ziegler-kozarek-92,
+ Author = {LaCamera, A.F. and Ziegler, D.P. and Kozarek, R.L.},
+ Journal = {Light Metals},
+ Pages = {1179-1186},
+ Title = {Magnetohydrodynamics in the {Hall-H{\'e}roult} process, an
+ overview},
+ Year = {1992}
+}
+
+@Article{ ladisa2011computational,
+ Title = {Computational simulations for aortic coarctation:
+ representative results from a sampling of patients.},
+ Author = {Ladisa, J.F. and Alberto, F.C. and Vignon-Clementel, I.E.
+ and Jin, K.H. and Xiao, N. and Ellwein, L.M. and Chan, F.P.
+ and Feinstein, J.A. and Taylor, C.A. and others},
+ Journal = {Journal of biomechanical engineering},
+ Volume = {133},
+ Number = {9},
+ Pages = {091008},
+ Year = {2011}
+}
+
+###Article{ ladisa2011computational,
+ Title = {Computational simulations for aortic coarctation:
+ representative results from a sampling of patients.},
+ Author = {Ladisa, J.F. and Alberto, F.C. and Vignon-Clementel, I.E.
+ and Jin, K.H. and Xiao, N. and Ellwein, L.M. and Chan, F.P.
+ and Feinstein, J.A. and Taylor, C.A. and others},
+ Journal = {Journal of biomechanical engineering},
+ Volume = {133},
+ Number = {9},
+ Pages = {091008},
+ Year = {2011}
+}
+
+@Book{ ladyzenskaya-68,
+ Author = {Ladyzenskaja, O.A. and Solonnikov, V.A. and Ural'ceva,
+ N.N.},
+ Publisher = {American Mathematical Society},
+ Series = {Translations of Mathematical Monographs},
+ Title = {Linear and Quasilinear Equations of parabolic type},
+ Volume = {23},
+ Year = {1968}
+}
+
+###Book{ ladyzenskaya-68,
+ Author = {Ladyzenskaja, O.A. and Solonnikov, V.A. and Ural'ceva,
+ N.N.},
+ Publisher = {American Mathematical Society},
+ Series = {Translations of Mathematical Monographs},
+ Title = {Linear and Quasilinear Equations of parabolic type},
+ Volume = {23},
+ Year = {1968}
+}
+
+@Article{ laflamme2002circ,
+ Title = {Evidence for Cardiomyocyte Repopulation by Extracardiac
+ Progenitors in Transplanted Human Hearts},
+ Author = {Laflamme, Michael A. and Myerson, David and Saffitz,
+ Jeffrey E. and Murry, Charles E.},
+ Journal = {Circulation Research},
+ Year = {2002},
+ Number = {6},
+ Pages = {634-640},
+ Volume = {90},
+ Abstract = {Human myocardium has long been considered to have
+ essentially no intrinsic regenerative capacity. Recent
+ studies in rodent models, however, have suggested the
+ presence of an extracardiac stem cell population, perhaps
+ in bone marrow, that is capable of some reconstitution of
+ cardiomyocytes after injury. To determine whether similar
+ mechanisms exist in the human heart, we evaluated human
+ female allograft hearts transplanted into male patients.
+ The presence of Y chromosomes in cardiomyocytes would
+ indicate these cells arose from the recipient, rather than
+ the donor heart. We identified 5 male patients who had
+ retained a female heart at least 9 months before death and
+ necropsy. Remarkably, in each case, the transplanted heart
+ contained a minute but readily detectable fraction of Y
+ chromosome-positive cardiomyocytes. The mean percentage of
+ cardiomyocytes arising from the host was estimated to be
+ 0.04% with a median of 0.016%. Most Y-positive
+ cardiomyocytes were associated with regions of acute
+ rejection, suggesting such chimerism involves an injury
+ event. Furthermore, the sole patient whose immediate cause
+ of death was allograft rejection showed a much higher
+ percentage of host-derived cardiomyocytes, up to 29% in
+ local, 1-mm2 ?hot spots.? Thus, adult humans have
+ extracardiac progenitor cells capable of migrating to and
+ repopulating damaged myocardium, but this process occurs at
+ very low levels.},
+ DOI = {10.1161/01.RES.0000014822.62629.EB},
+ EPrint = {http://circres.ahajournals.org/content/90/6/634.full.pdf+html},
+ File = {laflamme02.pdf:laflamme02.pdf:PDF},
+ timestamp = {2015/09/11},
+ URL = {http://circres.ahajournals.org/content/90/6/634.abstract}
+}
+
+@Article{ laflamme2011nature,
+ Title = {Heart regeneration},
+ Author = {Laflamme, Michael A and Murry, Charles E},
+ Journal = {Nature},
+ Year = {2011},
+ Number = {7347},
+ Pages = {326--335},
+ Volume = {473},
+ File = {laflamme11.pdf:laflamme11.pdf:PDF},
+ Publisher = {Nature Publishing Group},
+ timestamp = {2015/09/23}
+}
+
+@Article{ lafortune2012,
+ Author = {Lafortune, P. and Ar\'is, R. and V\'azquez, M. and
+ Houzeaux, G.},
+ Title = {Coupled electromechanical model of the heart: Parallel
+ finite element formulation},
+ Journal = {International Journal for Numerical Methods in Biomedical
+ Engineering},
+ Volume = {28},
+ Number = {1},
+ Publisher = {John Wiley & Sons, Ltd},
+ ISSN = {2040-7947},
+ DOI = {10.1002/cnm.1494},
+ Pages = {72--86},
+ Keywords = {cardiac mechanics, electrophysiology, parallelization,
+ finite element methods},
+ Year = {2012}
+}
+
+@Article{ lagana_2010,
+ Author = "Lagan\'a, K. and Balossino, R. and Migliavacca, F. and
+ Pennati, G. and Bove, E.~L. and de Leval, M.~R. and Dubini,
+ G.",
+ Title = "Multiscale modeling of the cardiovascular system:
+ application to the studyof pulmonaryand coronary perfusions
+ in the univentricular circulation",
+ Journal = "J. Biomech.",
+ Volume = "38",
+ Pages = "625--640",
+ Year = "2010"
+}
+
+###Article{ lagana_2010,
+ Author = "Lagan\'a, K. and Balossino, R. and Migliavacca, F. and
+ Pennati, G. and Bove, E.~L. and de Leval, M.~R. and Dubini,
+ G.",
+ Title = "Multiscale modeling of the cardiovascular system:
+ application to the studyof pulmonaryand coronary perfusions
+ in the univentricular circulation",
+ Journal = "J. Biomech.",
+ Volume = "38",
+ Pages = "625--640",
+ Year = "2010"
+}
+
+@Article{ lagree-99,
+ Author = {Lagr\'ee, P.-Y.},
+ Journal = {Eur. Phys. J. AP},
+ Pages = {153--163},
+ Title = {An inverse technique to deduce the elasticity of a large
+ artery},
+ Volume = {9},
+ Year = {1999}
+}
+
+###Article{ lagree-99,
+ Author = {Lagr\'ee, P.-Y.},
+ Journal = {Eur. Phys. J. AP},
+ Pages = {153--163},
+ Title = {An inverse technique to deduce the elasticity of a large
+ artery},
+ Volume = {9},
+ Year = {1999}
+}
+
+@Article{ lal_data_2017,
+ Title = {Data Assimilation for Identification of Cardiovascular
+ Network Characteristics},
+ Volume = {33},
+ Number = {5},
+ JournalTitle = {International journal for numerical methods in biomedical
+ engineering},
+ Year = {2017},
+ Pages = {e2824},
+ Author = {Lal, Rajnesh and Mohammadi, Bijan and Nicoud, Franck}
+}
+
+@Article{ lamata2014aortic,
+ Title = {Aortic relative pressure components derived from
+ four-dimensional flow cardiovascular magnetic resonance},
+ Author = {Lamata, Pablo and Pitcher, Alex and Krittian, Sebastian
+ and Nordsletten, David and Bissell, Malenka M and Cassar,
+ Thomas and Barker, Alex J and Markl, Michael and Neubauer,
+ Stefan and Smith, Nicolas P},
+ Journal = {Magnetic resonance in medicine},
+ Volume = {72},
+ Number = {4},
+ Pages = {1162--1169},
+ Year = {2014},
+ Publisher = {Wiley Online Library}
+}
+
+###Article{ lamata2014aortic,
+ Title = {Aortic relative pressure components derived from
+ four-dimensional flow cardiovascular magnetic resonance},
+ Author = {Lamata, Pablo and Pitcher, Alex and Krittian, Sebastian
+ and Nordsletten, David and Bissell, Malenka M and Cassar,
+ Thomas and Barker, Alex J and Markl, Michael and Neubauer,
+ Stefan and Smith, Nicolas P},
+ Journal = {Magnetic resonance in medicine},
+ Volume = {72},
+ Number = {4},
+ Pages = {1162--1169},
+ Year = {2014},
+ Publisher = {Wiley Online Library}
+}
+
+@Article{ lancellotti2018outcomesas,
+ Title = {Outcomes of Patients With Asymptomatic Aortic Stenosis
+ Followed Up in Heart Valve Clinics},
+ Author = {Lancellotti, Patrizio and Magne, Julien and Dulgheru,
+ Raluca and Clavel, Marie-Annick and Donal, Erwan and
+ Vannan, Mani A and Chambers, John and Rosenhek, Raphael and
+ Habib, Gilbert and Lloyd, Guy and others},
+ Journal = {JAMA cardiology},
+ Year = {2018},
+ Note = {doi:10.1001/jamacardio.2018.3152}
+}
+
+@Article{ landajuela2017fsibench,
+ Title = {Coupling schemes for the FSI forward prediction challenge:
+ comparative study and validation},
+ Author = {Landajuela, Mikel and Vidrascu, Marina and Chapelle,
+ Dominique and Fern{\'a}ndez, Miguel A},
+ Journal = {International journal for numerical methods in biomedical
+ engineering},
+ Volume = {33},
+ Number = {4},
+ Pages = {e2813},
+ Year = {2017},
+ Publisher = {Wiley Online Library}
+}
+
+@Book{ landau-lifschitz-6,
+ Author = {Landau, L. and Lifchitz, E.},
+ Publisher = {Pergamon Press},
+ Title = {Course of Theoretical Physics, volume 6},
+ Year = {1984}
+}
+
+###Book{ landau-lifschitz-6,
+ Author = {Landau, L. and Lifchitz, E.},
+ Publisher = {Pergamon Press},
+ Title = {Course of Theoretical Physics, volume 6},
+ Year = {1984}
+}
+
+@Article{ larson-higdon-87,
+ Author = {Larson, R.E. and Higdon, J.J.L.},
+ code = {por12},
+ Journal = {J. Fluid Mech.},
+ Pages = {119-136},
+ Title = {Microscopic flow near the surface of two-dimensional
+ porous media. Part2. Transverse flow},
+ Volume = {178},
+ Year = {1987}
+}
+
+###Article{ larson-higdon-87,
+ Author = {Larson, R.E. and Higdon, J.J.L.},
+ code = {por12},
+ Journal = {J. Fluid Mech.},
+ Pages = {119-136},
+ Title = {Microscopic flow near the surface of two-dimensional
+ porous media. Part2. Transverse flow},
+ Volume = {178},
+ Year = {1987}
+}
+
+@Article{ lasiecka-triggiani-03,
+ Author = {Lasiecka, I. and Triggiani, R.},
+ date-added = {2011-09-09 16:18:04 +0200},
+ date-modified = {2011-09-09 16:18:18 +0200},
+ Journal = {Abstr. Appl. Anal.},
+ Keywords = {EDP Control},
+ Number = {19},
+ Pages = {1061--1139},
+ Title = {{$L\sb 2(\Sigma)$}-regularity of the boundary to boundary
+ operator {$B\sp \ast L$} for hyperbolic and {P}etrowski
+ {PDE}s},
+ Year = {2003}
+}
+
+###Article{ lasiecka-triggiani-03,
+ Author = {Lasiecka, I. and Triggiani, R.},
+ date-added = {2011-09-09 16:18:04 +0200},
+ date-modified = {2011-09-09 16:18:18 +0200},
+ Journal = {Abstr. Appl. Anal.},
+ Keywords = {EDP Control},
+ Number = {19},
+ Pages = {1061--1139},
+ Title = {{$L\sb 2(\Sigma)$}-regularity of the boundary to boundary
+ operator {$B\sp \ast L$} for hyperbolic and {P}etrowski
+ {PDE}s},
+ Year = {2003}
+}
+
+@Article{ lassila_reduced_2013,
+ Title = {A Reduced Computational and Geometrical Framework for
+ Inverse Problems in Hemodynamics},
+ Volume = {29},
+ Number = {7},
+ JournalTitle = {International journal for numerical methods in biomedical
+ engineering},
+ Year = {2013},
+ Pages = {741--776},
+ Author = {Lassila, Toni and Manzoni, Andrea and Quarteroni, Alfio
+ and Rozza, Gianluigi}
+}
+
+@Article{ laurent_cockcroft_vanbortel_boutouyrie_giannattasio_hayoz_pannier_vlachopoulos_wilkinson_struijker-boudier_2006,
+ Title = {Expert consensus document on arterial stiffness:
+ methodological issues and clinical applications.},
+ Volume = {27},
+ Number = {21},
+ Journal = {European Heart Journal},
+ Author = {Laurent, S. and Cockcroft, J. and Van Bortel, L. and
+ Boutouyrie, P. and Giannattasio, C. and Hayoz, D. and
+ Pannier, B. and Vlachopoulos, C. and Wilkinson, I. and
+ Struijker-Boudier, H.},
+ Year = {2006},
+ Pages = {2588--2605}
+}
+
+###Article{ laurent_cockcroft_vanbortel_boutouyrie_giannattasio_hayoz_pannier_vlachopoulos_wilkinson_struijker-boudier_2006,
+ Title = {Expert consensus document on arterial stiffness:
+ methodological issues and clinical applications.},
+ Volume = {27},
+ URL = {http://www.ncbi.nlm.nih.gov/pubmed/17000623},
+ Number = {21},
+ Journal = {European Heart Journal},
+ Author = {Laurent, S. and Cockcroft, J. and Van Bortel, L. and
+ Boutouyrie, P. and Giannattasio, C. and Hayoz, D. and
+ Pannier, B. and Vlachopoulos, C. and Wilkinson, I. and
+ Struijker-Boudier, H.},
+ Year = {2006},
+ Pages = {2588--2605}
+}
+
+@Article{ layton-lee-peterson-02,
+ Author = {Layton, W. and Lee, H. K. and Peterson, J.},
+ Journal = {Appl. Math. Comput.},
+ Number = {1},
+ Pages = {1--19},
+ Title = {A defect-correction method for the incompressible
+ {N}avier-{S}tokes equations},
+ Volume = {129},
+ Year = {2002}
+}
+
+###Article{ layton-lee-peterson-02,
+ Author = {Layton, W. and Lee, H. K. and Peterson, J.},
+ Journal = {Appl. Math. Comput.},
+ Number = {1},
+ Pages = {1--19},
+ Title = {A defect-correction method for the incompressible
+ {N}avier-{S}tokes equations},
+ Volume = {129},
+ Year = {2002}
+}
+
+@InProceedings{ le-bris-98,
+ Author = {Le Bris, C.},
+ BookTitle = {Proceedings of the 4th European Computational Fluid
+ Dynamics Conference ECCOMAS 98},
+ Pages = {800--802},
+ Publisher = {Wiler},
+ Title = {Some theoretical and numerical issues related to the
+ multifluid magnetohydrodynamics equations},
+ Year = {1998}
+}
+
+###InProceedings{ le-bris-98,
+ Author = {Le Bris, C.},
+ BookTitle = {Proceedings of the 4th European Computational Fluid
+ Dynamics Conference ECCOMAS 98},
+ Pages = {800--802},
+ Publisher = {Wiler},
+ Title = {Some theoretical and numerical issues related to the
+ multifluid magnetohydrodynamics equations},
+ Year = {1998}
+}
+
+@Book{ le-tallec-00,
+ Author = {Le Tallec, P.},
+ Publisher = {Ellipses},
+ Title = {Introduction {\`a} la dynamique des structures},
+ Year = {2000}
+}
+
+###Book{ le-tallec-00,
+ Author = {Le Tallec, P.},
+ Publisher = {Ellipses},
+ Title = {Introduction {\`a} la dynamique des structures},
+ Year = {2000}
+}
+
+@InCollection{ le-tallec-94,
+ Author = {Le Tallec, P.},
+ BookTitle = {Handbook of numerical analysis, Vol.\ III},
+ Pages = {465--622},
+ Publisher = {North-Holland},
+ Title = {Numerical methods for nonlinear three-dimensional
+ elasticity},
+ Year = {1994}
+}
+
+###InCollection{ le-tallec-94,
+ Author = {Le Tallec, P.},
+ BookTitle = {Handbook of numerical analysis, Vol.\ III},
+ Pages = {465--622},
+ Publisher = {North-Holland},
+ Title = {Numerical methods for nonlinear three-dimensional
+ elasticity},
+ Year = {1994}
+}
+
+@Article{ le-tallec-mani-00,
+ Author = {Le Tallec, P. and Mani, S.},
+ code = {fsi2},
+ Journal = {Numer. Math.},
+ Number = {2},
+ Pages = {317--354},
+ Title = {Numerical analysis of a linearised fluid-structure
+ interaction problem},
+ Volume = {87},
+ Year = {2000}
+}
+
+###Article{ le-tallec-mani-00,
+ Author = {Le Tallec, P. and Mani, S.},
+ code = {fsi2},
+ Journal = {Numer. Math.},
+ Number = {2},
+ Pages = {317--354},
+ Title = {Numerical analysis of a linearised fluid-structure
+ interaction problem},
+ Volume = {87},
+ Year = {2000}
+}
+
+@Article{ le-tallec-mouro-01,
+ Author = {Le Tallec, P. and Mouro, J.},
+ code = {fsi1},
+ Journal = {Comput. Meth. Appl. Mech. Engrg.},
+ Pages = {3039-3067},
+ Title = {Fluid structure interaction with large structural
+ displacements},
+ Volume = {190},
+ Year = {2001}
+}
+
+###Article{ le-tallec-mouro-01,
+ Author = {Le Tallec, P. and Mouro, J.},
+ code = {fsi1},
+ Journal = {Comput. Meth. Appl. Mech. Engrg.},
+ Pages = {3039-3067},
+ Title = {Fluid structure interaction with large structural
+ displacements},
+ Volume = {190},
+ Year = {2001}
+}
+
+@Article{ lebihan1986radiology,
+ Title = {{MR} imaging of intravoxel incoherent motions: application
+ to diffusion and perfusion in neurologic disorders.},
+ Author = {Le Bihan, Denis and Breton, Eric and Lallemand, Denis and
+ Grenier, Philippe and Cabanis, Emmanuel and Laval-Jeantet,
+ Maurice},
+ Journal = {Radiology},
+ Year = {1986},
+ Number = {2},
+ Pages = {401--407},
+ Volume = {161},
+ Keywords = {IVIM, brain}
+}
+
+@Article{ lebihan1988radiology,
+ Title = {Separation of diffusion and perfusion in intravoxel
+ incoherent motion {MR} imaging.},
+ Author = {Le Bihan, Denis and Breton, Eric and Lallemand, Denis and
+ Aubin, M. L. and Vignaud, J. and Laval-Jeantet, M.},
+ Journal = {Radiology},
+ Year = {1988},
+ Number = {2},
+ Pages = {497--505},
+ Volume = {168},
+ owner = {david},
+ timestamp = {2015-04-21 20:18:07},
+ URL = {http://pubs.rsna.org/doi/abs/10.1148/radiology.168.2.3393671},
+ URLDate = {2015-04-21}
+}
+
+@Article{ lee2015bmma,
+ Title = {A computational model that predicts reverse growth in
+ response to mechanical unloading},
+ Author = {Lee, L.C. and Genet, M. and Acevedo-Bolton, G. and
+ Ordovas, K. and Guccione, J.M. and Kuhl, E.},
+ Journal = {Biomechanics and Modeling in Mechanobiology},
+ Year = {2015},
+ Number = {2},
+ Pages = {217-229},
+ Volume = {14},
+ DOI = {10.1007/s10237-014-0598-0},
+ File = {lee15.pdf:lee15.pdf:PDF},
+ ISSN = {1617-7959},
+ Keywords = {Remodeling; Reverse remodeling; Growth; End-diastolic
+ pressure?volume relationship; Finite element method;
+ Magnetic resonance imaging},
+ Language = {English},
+ Publisher = {Springer Berlin Heidelberg},
+ timestamp = {2014/07/29},
+ URL = {http://dx.doi.org/10.1007/s10237-014-0598-0}
+}
+
+@Article{ lee2015bmmb,
+ Title = {An integrated electromechanical-growth heart model for
+ simulating cardiac therapies},
+ Author = {Lee, LikChuan and Sundnes, Joakim and Genet, Martin and
+ Wenk, JonathanF. and Wall, SamuelT.},
+ Journal = {Biomechanics and Modeling in Mechanobiology},
+ Year = {2015},
+ Pages = {1-13},
+ DOI = {10.1007/s10237-015-0723-8},
+ File = {lee15a.pdf:lee15a.pdf:PDF},
+ ISSN = {1617-7959},
+ Keywords = {Finite element modeling; Growth and remodeling; Cardiac
+ electromechanics; Myocardial infarction; Bioinjection
+ therapy},
+ Language = {English},
+ Publisher = {Springer Berlin Heidelberg},
+ timestamp = {2015/09/22},
+ URL = {http://dx.doi.org/10.1007/s10237-015-0723-8}
+}
+
+@Article{ lee_three-point_1995,
+ Title = {Three-{{Point Phase}}-{{Contrast Velocity Measurements}}
+ with {{Increased Velocity}}-to-{{Noise Ratio}}},
+ Volume = {33},
+ JournalTitle = {Magnetic Resonance in Medicine},
+ Date = {1995},
+ Pages = {122-128},
+ Author = {Lee, Adrian and Pike, Bruce and Pelc, Norbert}
+}
+
+@Article{ legrice1995,
+ Author = {LeGrice, I. J. and Smaill, B. H. and Chai, L. Z. and
+ Edgar, S. G. and Gavin, J. B. and Hunter, P. J.},
+ Title = {Laminar structure of the heart: ventricular myocyte
+ arrangement and connective tissue architecture in the dog},
+ Volume = {269},
+ Number = {2},
+ Pages = {H571-H582},
+ Year = {1995},
+ Abstract = {We have studied the three-dimensional arrangement of
+ ventricular muscle cells and the associated extracellular
+ connective tissue matrix in dog hearts. Four hearts were
+ potassium-arrested, excised, and perfusion-fixed at zero
+ transmural pressure. Full-thickness segments were cut from
+ the right and left ventricular walls at a series of
+ precisely located sites. Morphology was visualized
+ macroscopically and with scanning electron microscopy in 1)
+ transmural planes of section and 2) planes tangential to
+ the epicardial surface. The appearance of all specimens was
+ consistent with an ordered laminar arrangement of myocytes
+ with extensive cleavage planes between muscle layers. These
+ planes ran radially from endocardium toward epicardium in
+ transmural section and coincided with the local muscle
+ fiber orientation in tangential section. Stereological
+ techniques were used to quantify aspects of this
+ organization. There was no consistent variation in the
+ cellular organization of muscle layers (48.4 +/- 20.4
+ microns thick and 4 +/- 2 myocytes across) transmurally or
+ in different ventricular regions (23 sites in 6 segments),
+ but there was significant transmural variation in the
+ coupling between adjacent layers. The number of branches
+ between layers decreased twofold from subepicardium to
+ midwall, whereas the length distribution of perimysial
+ collagen fibers connecting muscle layers was greatest in
+ the midwall. We conclude that ventricular myocardium is not
+ a uniformly branching continuum but a laminar hierarchy in
+ which it is possible to identify three axes of material
+ symmetry at any point.},
+ Journal = {American Journal of Physiology - Heart and Circulatory
+ Physiology}
+}
+
+@InCollection{ lekadir2011predictive,
+ Title = {Predictive modeling of cardiac fiber orientation using the
+ Knutsson mapping},
+ Author = {Lekadir, Karim and Ghafaryasl, Babak and Mu{\~n}oz-Moreno,
+ Emma and Butakoff, Constantine and Hoogendoorn, Corn{\'e}
+ and Frangi, Alejandro F},
+ BookTitle = {Medical Image Computing and Computer-Assisted
+ Intervention--MICCAI 2011},
+ Pages = {50--57},
+ Year = {2011},
+ Publisher = {Springer}
+}
+
+@Article{ lekadir2014statistical,
+ Title = {Statistical personalization of ventricular fiber
+ orientation using shape predictors},
+ Author = {Lekadir, Karim and Hoogendoorn, Corn{\'e} and Pereanez,
+ Marco and Alb{\`a}, X{\`e}nia and Pashaei, Ali and Frangi,
+ Alejandro F},
+ Journal = {Medical Imaging, IEEE Transactions on},
+ Volume = {33},
+ Number = {4},
+ Pages = {882--890},
+ Year = {2014},
+ Publisher = {IEEE}
+}
+
+@Article{ lekadir2015media,
+ Title = {Statistically-driven 3D fiber reconstruction and denoising
+ from multi-slice cardiac DTI using a Markov random field
+ model},
+ Author = {Lekadir, Karim and Lange, Matthias and Zimmer, Veronika A
+ and Hoogendoorn, Corn{\'e} and Frangi, Alejandro F},
+ Journal = {Medical Image Analysis},
+ Year = {2015},
+ Note = {In press},
+ Keywords = {DTI, DMRI, statistical, denoising, Markov},
+ Publisher = {Elsevier}
+}
+
+@Article{ lemke2011mri,
+ Title = {Toward an optimal distribution of b values for intravoxel
+ incoherent motion imaging},
+ Author = {Lemke, Andreas and Stieltjes, Bram and Schad, Lothar R.
+ and Laun, Frederik B.},
+ Journal = {Magnetic Resonance Imaging},
+ Year = {2011},
+ Month = {Jul},
+ Number = {6},
+ Pages = {766--776},
+ Volume = {29},
+ DOI = {10.1016/j.mri.2011.03.004},
+ File = {:Lemke2011MRI.pdf:PDF},
+ ISSN = {0730-725X},
+ Publisher = {Elsevier BV},
+ URL = {http://dx.doi.org/10.1016/j.mri.2011.03.004}
+}
+
+@InCollection{ leone-gresho-84,
+ Author = {Leone, J.M. and Gresho, P.M.},
+ Pages = {667-683},
+ Publisher = {Springer-Verlag},
+ Title = {Another attempt to overcome the bent element blues},
+ Year = {1984}
+}
+
+###InCollection{ leone-gresho-84,
+ Author = {Leone, J.M. and Gresho, P.M.},
+ BookTitle = {5th international conference on finite element methods in
+ water ressources, {Burlington}},
+ Pages = {667-683},
+ Publisher = {Springer-Verlag},
+ Title = {Another attempt to overcome the bent element blues},
+ Year = {1984}
+}
+
+@Article{ lesoinne-farhat-95,
+ Author = {Lesoinne, M. and Farhat, C.},
+ Journal = {Computer Methods in Applied Mechanics and Engineering},
+ Pages = {71-90},
+ Title = {Geometric Conservation Laws for Flow Problems with Moving
+ Boundaries and Deformable Meshes and Their Impact on
+ Aeroelastic Computations},
+ Volume = {134},
+ Year = {1996}
+}
+
+###Article{ lesoinne-farhat-95,
+ Author = {Lesoinne, M. and Farhat, C.},
+ Journal = {Computer Methods in Applied Mechanics and Engineering},
+ Pages = {71-90},
+ Title = {Geometric Conservation Laws for Flow Problems with Moving
+ Boundaries and Deformable Meshes and Their Impact on
+ Aeroelastic Computations},
+ Volume = {134},
+ Year = {1996}
+}
+
+@Article{ lesoinne-farhat-98,
+ Author = {Lesoinne, M. and Farhat, C.},
+ code = {fsi 19},
+ Journal = {AIAA Journal},
+ Number = {9},
+ Pages = {1754-1757},
+ Title = {Higher-order subiteration-free staggered algorithm for
+ nonlinear transient aeroelastic problems},
+ Volume = {36},
+ Year = {1998}
+}
+
+###Article{ lesoinne-farhat-98,
+ Author = {Lesoinne, M. and Farhat, C.},
+ code = {fsi 19},
+ Journal = {AIAA Journal},
+ Number = {9},
+ Pages = {1754-1757},
+ Title = {Higher-order subiteration-free staggered algorithm for
+ nonlinear transient aeroelastic problems},
+ Volume = {36},
+ Year = {1998}
+}
+
+@Article{ leuprecht-perktold-01,
+ Author = {Leuprecht, A. and Perktold, K.},
+ Journal = {Computer Methods in Biomechanics and Biomedical
+ Engineering},
+ Note = {(in press)},
+ Title = {Numerical study on viscoelastic blood flow in large
+ arteries},
+ Year = {2001}
+}
+
+###Article{ leuprecht-perktold-01,
+ Author = {Leuprecht, A. and Perktold, K.},
+ Journal = {Computer Methods in Biomechanics and Biomedical
+ Engineering},
+ Note = {(in press)},
+ Title = {Numerical study on viscoelastic blood flow in large
+ arteries},
+ Year = {2001}
+}
+
+@Book{ levitt2008spindynnmr,
+ Title = {Spin Dynamics: Basics of Nuclear Magnetic Resonance},
+ Author = {Levitt, Malcolm H.},
+ Publisher = {John Wiley \& Sons},
+ Year = {2008},
+ Address = {Chichester},
+ Edition = {2},
+ owner = {david},
+ timestamp = {2015-05-06 19:42:35}
+}
+
+@Article{ levy-83,
+ Annote = {darcy, brinkman, perturbation},
+ Author = {Levy, T.},
+ code = {por1},
+ Journal = {Int. J. Engng. Sci.},
+ Number = {1},
+ Pages = {11-23},
+ Title = {Fluid flow through an array of fixed particles},
+ Volume = {21},
+ Year = {1983}
+}
+
+###Article{ levy-83,
+ Annote = {darcy, brinkman, perturbation},
+ Author = {Levy, T.},
+ code = {por1},
+ Journal = {Int. J. Engng. Sci.},
+ Number = {1},
+ Pages = {11-23},
+ Title = {Fluid flow through an array of fixed particles},
+ Volume = {21},
+ Year = {1983}
+}
+
+@Article{ levy-90,
+ Author = {Levy, T.},
+ code = {por2},
+ Journal = {Eur. J. Mech., B/Fluids},
+ Number = {4},
+ Pages = {309-327},
+ Title = {Filtration in a porous fissured rock: influence of the
+ fissures connexity},
+ Volume = {9},
+ Year = {1990}
+}
+
+###Article{ levy-90,
+ Author = {Levy, T.},
+ code = {por2},
+ Journal = {Eur. J. Mech., B/Fluids},
+ Number = {4},
+ Pages = {309-327},
+ Title = {Filtration in a porous fissured rock: influence of the
+ fissures connexity},
+ URL = {darcy},
+ Volume = {9},
+ Year = {1990},
+ bdsk-url-1 = {darcy}
+}
+
+@Article{ li2013prevalence,
+ Title = {Prevalence and trends of the abdominal aortic aneurysms
+ epidemic in general population-a meta-analysis},
+ Author = {Li, Xi and Zhao, Ge and Zhang, Jian and Duan, Zhiquan and
+ Xin, Shijie},
+ Journal = {PLoS One},
+ Volume = {8},
+ Number = {12},
+ Pages = {e81260},
+ Year = {2013},
+ Publisher = {Public Library of Science}
+}
+
+@Article{ lighthill_displacement_1958,
+ langid = {english},
+ Title = {On Displacement Thickness},
+ Volume = {4},
+ ISSN = {0022-1120, 1469-7645},
+ URL = {http://www.journals.cambridge.org/abstract_S0022112058000525},
+ DOI = {10.1017/S0022112058000525},
+ Number = {04},
+ JournalTitle = {Journal of Fluid Mechanics},
+ URLDate = {2019-08-24},
+ Date = {1958-08},
+ Pages = {383},
+ Author = {Lighthill, M. J.}
+}
+
+@Article{ linke_pressure-robustness_2016,
+ Title = {Pressure-Robustness and Discrete {{Helmholtz}} Projectors
+ in Mixed Finite Element Methods for the Incompressible
+ {{Navier}}\textendash{{Stokes}} Equations},
+ Author = {Linke, A. and Merdon, C.},
+ Year = {2016},
+ Month = nov,
+ Volume = {311},
+ Pages = {304--326},
+ ISSN = {0045-7825},
+ DOI = {10.1016/j.cma.2016.08.018},
+ Abstract = {Recently, it was understood how to repair a certain
+ L2-orthogonality of discretely divergence-free vector
+ fields and gradient fields such that the velocity error of
+ inf\textendash{}sup stable discretizations for the
+ incompressible Stokes equations becomes
+ pressure-independent. These new `pressure-robust' Stokes
+ discretizations deliver a small velocity error, whenever
+ the continuous velocity field can be well approximated on a
+ given grid. On the contrary, classical inf\textendash{}sup
+ stable Stokes discretizations can guarantee a small
+ velocity error only when both the velocity and the pressure
+ field can be approximated well, simultaneously. In this
+ contribution, `pressure-robustness' is extended to the
+ time-dependent Navier\textendash{}Stokes equations. In
+ particular, steady and time-dependent potential flows are
+ shown to build an entire class of benchmarks, where
+ pressure-robust discretizations can outperform classical
+ approaches significantly. Speedups will be explained by a
+ new theoretical concept, the `discrete Helmholtz projector'
+ of an inf\textendash{}sup stable discretization. Moreover,
+ different discrete nonlinear convection terms are
+ discussed, and skew-symmetric pressure-robust
+ discretizations are proposed.},
+ Journal = {Computer Methods in Applied Mechanics and Engineering}
+}
+
+@Book{ lion-69,
+ Author = {Lions, J.-L.},
+ Publisher = {Dunod},
+ Title = {Quelques m{\'e}thodes de r{\'e}solution des probl{\`e}mes
+ aux limites non lin{\'e}aires},
+ Year = {1969}
+}
+
+###Book{ lion-69,
+ Author = {Lions, J.-L.},
+ Publisher = {Dunod},
+ Title = {Quelques m{\'e}thodes de r{\'e}solution des probl{\`e}mes
+ aux limites non lin{\'e}aires},
+ Year = {1969}
+}
+
+@Book{ lions-96,
+ Address = {Oxford},
+ Author = {Lions, P.-L.},
+ Publisher = {{Oxford University Press}},
+ Title = {Mathematical {Topics} in {Fluid} {Mechanics}. {Vol. 1 :
+ incompressible models}},
+ Year = {1996}
+}
+
+###Book{ lions-96,
+ Address = {Oxford},
+ Author = {Lions, P.-L.},
+ Publisher = {{Oxford University Press}},
+ Title = {Mathematical {Topics} in {Fluid} {Mechanics}. {Vol. 1 :
+ incompressible models}},
+ Year = {1996}
+}
+
+@Article{ lions-maday-turinici-01,
+ Author = {Lions, Jacques-Louis and Maday, Yvon and Turinici,
+ Gabriel},
+ fjournal = {Comptes Rendus de l'Acad{\'e}mie des Sciences. S{\'e}rie
+ I. Math{\'e}matique},
+ Journal = {C. R. Acad. Sci. Paris S{\'e}r. I Math.},
+ Number = {7},
+ Pages = {661--668},
+ Title = {R{\'e}solution d'{EDP} par un sch{\'e}ma en temps
+ ``parar{\'e}el''},
+ Volume = {332},
+ Year = {2001}
+}
+
+###Article{ lions-maday-turinici-01,
+ Author = {Lions, Jacques-Louis and Maday, Yvon and Turinici,
+ Gabriel},
+ fjournal = {Comptes Rendus de l'Acad{\'e}mie des Sciences. S{\'e}rie
+ I. Math{\'e}matique},
+ Journal = {C. R. Acad. Sci. Paris S{\'e}r. I Math.},
+ Number = {7},
+ Pages = {661--668},
+ Title = {R{\'e}solution d'{EDP} par un sch{\'e}ma en temps
+ ``parar{\'e}el''},
+ Volume = {332},
+ Year = {2001}
+}
+
+@Book{ lions-magenes-68,
+ Author = {Lions, J.-L. and Magenes, E.},
+ Publisher = {Dunod},
+ Title = {Probl{\`e}mes aux limites non homog{\`e}nes et
+ applications},
+ Year = {1968}
+}
+
+###Book{ lions-magenes-68,
+ Author = {Lions, J.-L. and Magenes, E.},
+ Publisher = {Dunod},
+ Title = {Probl{\`e}mes aux limites non homog{\`e}nes et
+ applications},
+ Year = {1968}
+}
+
+@Article{ lions-perthame-souganidis-96,
+ Author = {Lions, P.-L. and Perthame, B. and Souganidis, P. E.},
+ Journal = {Comm. Pure Appl. Math.},
+ Number = {6},
+ Pages = {599--638},
+ Title = {Existence and stability of entropy solutions for the
+ hyperbolic systems of isentropic gas dynamics in {E}ulerian
+ and {L}agrangian coordinates},
+ Volume = {49},
+ Year = {1996}
+}
+
+###Article{ lions-perthame-souganidis-96,
+ Author = {Lions, P.-L. and Perthame, B. and Souganidis, P. E.},
+ Journal = {Comm. Pure Appl. Math.},
+ Number = {6},
+ Pages = {599--638},
+ Title = {Existence and stability of entropy solutions for the
+ hyperbolic systems of isentropic gas dynamics in {E}ulerian
+ and {L}agrangian coordinates},
+ Volume = {49},
+ Year = {1996}
+}
+
+@Article{ liu_effect_2011,
+ langid = {english},
+ Title = {Effect of Non-{{Newtonian}} and Pulsatile Blood Flow on
+ Mass Transport in the Human Aorta},
+ Volume = {44},
+ ISSN = {00219290},
+ URL = {https://linkinghub.elsevier.com/retrieve/pii/S0021929011000558},
+ DOI = {10.1016/j.jbiomech.2011.01.024},
+ Number = {6},
+ JournalTitle = {Journal of Biomechanics},
+ URLDate = {2019-02-13},
+ Year = {2011-04},
+ Pages = {1123-1131},
+ Author = {Liu, Xiao and Fan, Yubo and Deng, Xiaoyan and Zhan, Fan}
+}
+
+@Article{ loerakker2014bmm,
+ Title = {A physically motivated constitutive model for
+ cell-mediated compaction and collagen remodeling in soft
+ tissues},
+ Author = {Loerakker, Sandra and Obbink-Huizer, Christine and
+ Baaijens, FrankP.T.},
+ Journal = {Biomechanics and Modeling in Mechanobiology},
+ Year = {2014},
+ Number = {5},
+ Pages = {985-1001},
+ Volume = {13},
+ DOI = {10.1007/s10237-013-0549-1},
+ ISSN = {1617-7959},
+ Keywords = {Finite element modeling; Actin stress fibers; Collagen
+ remodeling; Prestress},
+ Language = {English},
+ Publisher = {Springer Berlin Heidelberg},
+ timestamp = {2015/09/23},
+ URL = {http://dx.doi.org/10.1007/s10237-013-0549-1}
+}
+
+@Book{ logan-01,
+ Author = {Logan, J. D.},
+ Publisher = {Springer-Verlag},
+ Title = {Transport modeling in hydrogeochemical systems},
+ Year = {2001}
+}
+
+###Book{ logan-01,
+ Author = {Logan, J. D.},
+ Publisher = {Springer-Verlag},
+ Title = {Transport modeling in hydrogeochemical systems},
+ Year = {2001}
+}
+
+@Article{ logan-jewett-arnold-95,
+ Author = {Logan, B.E. and Jewett, D.G. and Arnold, R.G. and Bouwer,
+ E.J. and O'Melia, C.R.},
+ code = {por25},
+ Journal = {J. Environ. Eng.},
+ Pages = {869-873},
+ Title = {Clarification of clean-bed filtration models},
+ Volume = {121},
+ Year = {1995}
+}
+
+###Article{ logan-jewett-arnold-95,
+ Author = {Logan, B.E. and Jewett, D.G. and Arnold, R.G. and Bouwer,
+ E.J. and O'Melia, C.R.},
+ code = {por25},
+ Journal = {J. Environ. Eng.},
+ Pages = {869-873},
+ Title = {Clarification of clean-bed filtration models},
+ Volume = {121},
+ Year = {1995}
+}
+
+@InProceedings{ lombaert-etal-11d,
+ Author = {Lombaert, Herve and Peyrat, Jean-Marc and Croisille,
+ Pierre and Rapacchi, Stanislas and Fanton, Laurent and
+ Clarysse, Patrick and Delingette, Herve and Nicholas,
+ Ayache},
+ Title = {Statistical Analysis of the Human Cardiac Fiber
+ Architecture from DT-MRI},
+ BookTitle = {Proceedings of the 5th International Conference on
+ Functional Imaging and Modeling of the Heart},
+ Series = {FIMH 2011, LNCS 6666},
+ Year = {2011},
+ ISBN = {},
+ Location = {New York, USA},
+ Pages = {171--179},
+ numpages = {9},
+ Publisher = {Springer-Verlag},
+ Address = {Berlin, Heidelberg}
+}
+
+@Article{ lombaert2012human,
+ Title = {Human atlas of the cardiac fiber architecture: study on a
+ healthy population},
+ Author = {Lombaert, H. and Peyrat, J. and Croisille, P. and
+ Rapacchi, S. and Fanton, L. and Cheriet, F. and Clarysse,
+ P. and Magnin, I. and Delingette, H. and Ayache, N.},
+ Journal = {{IEEE Transactions on Medical Imaging}},
+ Volume = {31},
+ Number = {7},
+ Pages = {1436--1447},
+ Year = {2012},
+ Publisher = {IEEE}
+}
+
+@InCollection{ lombaert2013joint,
+ Title = {Joint statistics on cardiac shape and fiber architecture},
+ Author = {Lombaert, Herv{\'e} and Peyrat, Jean-Marc},
+ BookTitle = {Medical Image Computing and Computer-Assisted
+ Intervention--MICCAI 2013},
+ Pages = {492--500},
+ Year = {2013},
+ Publisher = {Springer}
+}
+
+@Article{ lombardi_inverse_2014,
+ Title = {Inverse Problems in {{1D}} Hemodynamics on Systemic
+ Networks: A Sequential Approach},
+ Volume = {30},
+ ShortTitle = {Inverse Problems in {{1D}} Hemodynamics on Systemic
+ Networks},
+ Number = {2},
+ JournalTitle = {International journal for numerical methods in biomedical
+ engineering},
+ Year = {2014},
+ Pages = {160--179},
+ Author = {Lombardi, Damiano}
+}
+
+@Article{ lorell2000circ,
+ Title = {Left Ventricular Hypertrophy: Pathogenesis, Detection, and
+ Prognosis},
+ Author = {Lorell, Beverly H. and Carabello, Blase A.},
+ Journal = {Circulation},
+ Year = {2000},
+ Number = {4},
+ Pages = {470-479},
+ Volume = {102},
+ comments = {How Is Mechanical Information Transduced to Cardiac
+ Growth?},
+ DOI = {10.1161/01.CIR.102.4.470},
+ EPrint = {http://circ.ahajournals.org/content/102/4/470.full.pdf+html},
+ File = {lorell00.pdf:lorell00.pdf:PDF},
+ timestamp = {2015/09/14},
+ URL = {http://circ.ahajournals.org/content/102/4/470.short}
+}
+
+@Article{ lorenz_closed_2012,
+ Title = {Closed Circuit {{MR}} Compatible Pulsatile Pump System
+ Using a Ventricular Assist Device and Pressure Control
+ Unit},
+ Author = {Lorenz, R. and Benk, C. and Bock, J. and Stalder, A. F.
+ and Korvink, J. G. and Hennig, J. and Markl, M.},
+ Year = {2012},
+ Volume = {67},
+ Pages = {258--268},
+ Journal = {Magnetic resonance in medicine},
+ Number = {1}
+}
+
+@Article{ lowes2002nejm,
+ Title = {Myocardial Gene Expression in Dilated Cardiomyopathy
+ Treated with Beta-Blocking Agents},
+ Author = {Lowes, Brian D. and Gilbert, Edward M. and Abraham,
+ William T. and Minobe, Wayne A. and Larrabee, Patti and
+ Ferguson, Debra and Wolfel, Eugene E. and Lindenfeld, JoAnn
+ and Tsvetkova, Tatiana and Robertson, Alastair D. and
+ Quaife, Robert A. and Bristow, Michael R.},
+ Journal = {New England Journal of Medicine},
+ Year = {2002},
+ Note = {PMID: 11986409},
+ Number = {18},
+ Pages = {1357-1365},
+ Volume = {346},
+ DOI = {10.1056/NEJMoa012630},
+ EPrint = {http://dx.doi.org/10.1056/NEJMoa012630},
+ File = {lowes02.pdf:lowes02.pdf:PDF},
+ timestamp = {2015/09/14},
+ URL = {http://dx.doi.org/10.1056/NEJMoa012630}
+}
+
+@Article{ luenberger-71,
+ Author = {Luenberger, D. G.},
+ date-added = {2009-03-10 11:59:23 -0700},
+ date-modified = {2009-03-10 11:59:32 -0700},
+ Journal = {IEEE Transactions on Automatic Control},
+ Pages = {596--602},
+ Title = {An introduction to observers},
+ Volume = {16},
+ Year = {1971}
+}
+
+###Article{ luenberger-71,
+ Author = {Luenberger, D. G.},
+ date-added = {2009-03-10 11:59:23 -0700},
+ date-modified = {2009-03-10 11:59:32 -0700},
+ Journal = {IEEE Transactions on Automatic Control},
+ Pages = {596--602},
+ Title = {An introduction to observers},
+ Volume = {16},
+ Year = {1971}
+}
+
+@Article{ ma-lee-wu-92,
+ Author = {Ma, X. and Lee, G.C. and Wu, S.G.},
+ code = {fsi13},
+ Journal = {Transactions of the ASME},
+ Pages = {490-496},
+ Title = {Numerical simulation for the propagation of nonlinear
+ pulsatile waves in arteries},
+ Volume = {114},
+ Year = {1992}
+}
+
+###Article{ ma-lee-wu-92,
+ Author = {Ma, X. and Lee, G.C. and Wu, S.G.},
+ code = {fsi13},
+ Journal = {Transactions of the ASME},
+ Pages = {490-496},
+ Title = {Numerical simulation for the propagation of nonlinear
+ pulsatile waves in arteries},
+ Volume = {114},
+ Year = {1992}
+}
+
+@InCollection{ maday-09,
+ Author = {Maday, Y.},
+ Title = {Analysis of coupled models for fluid-structure interaction
+ of internal flows},
+ BookTitle = {Cardiovascular mathematics},
+ Series = {MS\&A. Model. Simul. Appl.},
+ Volume = {1},
+ Pages = {279--306},
+ Publisher = {Springer},
+ Year = {2009}
+}
+
+###InCollection{ maday-09,
+ Author = {Maday, Y.},
+ Title = {Analysis of coupled models for fluid-structure interaction
+ of internal flows},
+ BookTitle = {Cardiovascular mathematics},
+ Series = {MS\&A. Model. Simul. Appl.},
+ Volume = {1},
+ Pages = {279--306},
+ Publisher = {Springer},
+ Year = {2009}
+}
+
+@Article{ maier2012ijnmbe,
+ Title = {Correlation of biomechanics to tissue reaction in aortic
+ aneurysms assessed by finite elements and
+ [18F]--fluorodeoxyglucose--PET/CT},
+ Author = {Maier, Andreas and Essler, Markus and Gee, Michael W and
+ Eckstein, Hans-Henning and Wall, Wolfgang A and Reeps,
+ Christian},
+ Journal = {International Journal for Numerical Methods in Biomedical
+ Engineering},
+ Volume = {28},
+ Number = {4},
+ Pages = {456--471},
+ Year = {2012},
+ Publisher = {Wiley Online Library}
+}
+
+@PhdThesis{ maillard-92,
+ Annote = {mhd, aluminium, stability},
+ Author = {Maillard, P.},
+ code = {mhd36},
+ School = {Ecole Polytechnique F{\'e}d{\'e}rale de Lausanne},
+ Title = {Sur la stabilit{\'e} magn{\'e}tohydrodynamique d'une
+ cellule de H{\'e}roult de longueur infinie},
+ Year = {1992}
+}
+
+###PhdThesis{ maillard-92,
+ Annote = {mhd, aluminium, stability},
+ Author = {Maillard, P.},
+ code = {mhd36},
+ School = {Ecole Polytechnique F{\'e}d{\'e}rale de Lausanne},
+ Title = {Sur la stabilit{\'e} magn{\'e}tohydrodynamique d'une
+ cellule de H{\'e}roult de longueur infinie},
+ Year = {1992}
+}
+
+@Article{ maillard-romerio-96,
+ Author = {Maillard, P. and Romerio, M. V.},
+ Journal = {Journal of Computational and Applied Mathematics},
+ Pages = {47-65},
+ Title = {A stability criterion for an infinitely long
+ {Hall-H{\'e}roult} cell},
+ Volume = {71},
+ Year = {1996}
+}
+
+###Article{ maillard-romerio-96,
+ Author = {Maillard, P. and Romerio, M. V.},
+ Journal = {Journal of Computational and Applied Mathematics},
+ Pages = {47-65},
+ Title = {A stability criterion for an infinitely long
+ {Hall-H{\'e}roult} cell},
+ Volume = {71},
+ Year = {1996}
+}
+
+@Article{ malossi-blanco-deparis-quarteroni-11,
+ Author = {Malossi, A. Cristiano I. and Blanco, Pablo J. and Deparis,
+ Simone and Quarteroni, Alfio},
+ Title = {Algorithms for the partitioned solution of weakly coupled
+ fluid models for cardiovascular flows},
+ Journal = {International Journal for Numerical Methods in Biomedical
+ Engineering},
+ Volume = {27},
+ Number = {12},
+ Publisher = {John Wiley & Sons, Ltd},
+ ISSN = {2040-7947},
+ DOI = {10.1002/cnm.1457},
+ Pages = {2035--2057},
+ Keywords = {domain decomposition, parallel algorithms, NavierâStokes
+ equations, geometrical multiscale, Newton method,
+ haemodynamics},
+ Year = {2011},
+ Abstract = {}
+}
+
+###Article{ malossi-blanco-deparis-quarteroni-11,
+ Author = {Malossi, A. Cristiano I. and Blanco, Pablo J. and Deparis,
+ Simone and Quarteroni, Alfio},
+ Title = {Algorithms for the partitioned solution of weakly coupled
+ fluid models for cardiovascular flows},
+ Journal = {International Journal for Numerical Methods in Biomedical
+ Engineering},
+ Volume = {27},
+ Number = {12},
+ Publisher = {John Wiley & Sons, Ltd},
+ ISSN = {2040-7947},
+ URL = {http://dx.doi.org/10.1002/cnm.1457},
+ DOI = {10.1002/cnm.1457},
+ Pages = {2035--2057},
+ Keywords = {domain decomposition, parallel algorithms, NavierâStokes
+ equations, geometrical multiscale, Newton method,
+ haemodynamics},
+ Year = {2011},
+ Abstract = {}
+}
+
+@Article{ marcati-96,
+ Author = {Marcati, P.},
+ Journal = {Diff. and Int. Eq.},
+ Number = {4},
+ Pages = {827-848},
+ Title = {Weak solutions to a nonlinear partial differential
+ equation of mixed type},
+ Volume = {9},
+ Year = {1996}
+}
+
+###Article{ marcati-96,
+ Author = {Marcati, P.},
+ Journal = {Diff. and Int. Eq.},
+ Number = {4},
+ Pages = {827-848},
+ Title = {Weak solutions to a nonlinear partial differential
+ equation of mixed type},
+ Volume = {9},
+ Year = {1996}
+}
+
+@Article{ mariappan-etal-10,
+ Author = {Mariappan, Yogesh K. and Glaser, Kevin J. and Ehman,
+ Richard L.},
+ Title = {Magnetic resonance elastography: A review},
+ Journal = {Clinical Anatomy},
+ Volume = {23},
+ Number = {5},
+ Publisher = {Wiley Subscription Services, Inc., A Wiley Company},
+ ISSN = {1098-2353},
+ DOI = {10.1002/ca.21006},
+ Pages = {497--511},
+ Keywords = {elasticity imaging, palpation, mechanical properties,
+ shear stiffness},
+ Year = {2010}
+}
+
+###Article{ mariappan-etal-10,
+ Author = {Mariappan, Yogesh K. and Glaser, Kevin J. and Ehman,
+ Richard L.},
+ Title = {Magnetic resonance elastography: A review},
+ Journal = {Clinical Anatomy},
+ Volume = {23},
+ Number = {5},
+ Publisher = {Wiley Subscription Services, Inc., A Wiley Company},
+ ISSN = {1098-2353},
+ URL = {http://dx.doi.org/10.1002/ca.21006},
+ DOI = {10.1002/ca.21006},
+ Pages = {497--511},
+ Keywords = {elasticity imaging, palpation, mechanical properties,
+ shear stiffness},
+ Year = {2010}
+}
+
+@Article{ markl2003jmri,
+ Title = {Time-resolved three-dimensional phase-contrast MRI.},
+ Author = {Markl, Michael and Chan, Frandics P. and Alley, Marcus T.
+ and Wedding, Kris L. and Draney, Mary T. and Elkins, Chris
+ J. and Parker, David W. and Wicker, Ryan and Taylor,
+ Charles A. and Herfkens, Robert J. and Pelc, Norbert J.},
+ Journal = {J Magn Reson Imaging},
+ Year = {2003},
+ Month = {Apr},
+ Number = {4},
+ Pages = {499--506},
+ Volume = {17},
+ Abstract = {To demonstrate the feasibility of a four-dimensional phase
+ contrast (PC) technique that permits spatial and temporal
+ coverage of an entire three-dimensional volume, to
+ quantitatively validate its accuracy against an established
+ time resolved two-dimensional PC technique to explore
+ advantages of the approach with regard to the
+ four-dimensional nature of the data.Time-resolved,
+ three-dimensional anatomical images were generated
+ simultaneously with registered three-directional velocity
+ vector fields. Improvements compared to prior methods
+ include retrospectively gated and respiratory compensated
+ image acquisition, interleaved flow encoding with freely
+ selectable velocity encoding (venc) along each spatial
+ direction, and flexible trade-off between temporal
+ resolution and total acquisition time.The implementation
+ was validated against established two-dimensional PC
+ techniques using a well-defined phantom, and successfully
+ applied in volunteer and patient examinations. Human
+ studies were performed after contrast administration in
+ order to compensate for loss of in-flow enhancement in the
+ four-dimensional approach.Advantages of the
+ four-dimensional approach include the complete spatial and
+ temporal coverage of the cardiovascular region of interest
+ and the ability to obtain high spatial resolution in all
+ three dimensions with higher signal-to-noise ratio compared
+ to two-dimensional methods at the same resolution. In
+ addition, the four-dimensional nature of the data offers a
+ variety of image processing options, such as magnitude and
+ velocity multi-planar reformation, three-directional vector
+ field plots, and velocity profiles mapped onto selected
+ planes of interest.},
+ DOI = {10.1002/jmri.10272},
+ Institution = {Department of Radiology, Stanford University, Stanford,
+ California 94304, USA. markl@s-word.stanford.edu},
+ Keywords = {Contrast Media; Coronary Circulation, physiology;
+ Feasibility Studies; Gadolinium DTPA; Humans; Imaging,
+ Three-Dimensional; Magnetic Resonance Imaging, methods;
+ Phantoms, Imaging},
+ Language = {eng},
+ medline-pst = {ppublish},
+ owner = {stoeckc},
+ pmid = {12655592},
+ timestamp = {2015.07.28},
+ URL = {http://dx.doi.org/10.1002/jmri.10272}
+}
+
+@Article{ markl20124d,
+ Title = {4{D} flow {MRI}},
+ Author = {Markl, Michael and Frydrychowicz, Alex and Kozerke,
+ Sebastian and Hope, Mike and Wieben, Oliver},
+ Journal = {Journal of Magnetic Resonance Imaging},
+ Volume = {36},
+ Number = {5},
+ Pages = {1015--1036},
+ Year = {2012},
+ Publisher = {Wiley Online Library}
+}
+
+###Article{ markl20124d,
+ Title = {4{D} flow {MRI}},
+ Author = {Markl, Michael and Frydrychowicz, Alex and Kozerke,
+ Sebastian and Hope, Mike and Wieben, Oliver},
+ Journal = {Journal of Magnetic Resonance Imaging},
+ Volume = {36},
+ Number = {5},
+ Pages = {1015--1036},
+ Year = {2012},
+ Publisher = {Wiley Online Library}
+}
+
+@Article{ markl_4d_2012,
+ Title = {{{4D}} Flow {{MRI}}},
+ Volume = {36},
+ Number = {5},
+ JournalTitle = {Journal of Magnetic Resonance Imaging},
+ Year = {2012},
+ Pages = {1015--1036},
+ Author = {Markl, Michael and Frydrychowicz, Alex and Kozerke,
+ Sebastian and Hope, Mike and Wieben, Oliver}
+}
+
+@Article{ markl_time-resolved_2003,
+ Title = {Time-Resolved Three-Dimensional Phase-Contrast {{MRI}}},
+ Author = {Markl, Michael and Chan, Frandics P. and Alley, Marcus T.
+ and Wedding, Kris L. and Draney, Mary T. and Elkins, Chris
+ J. and Parker, David W. and Wicker, Ryan and Taylor,
+ Charles A. and Herfkens, Robert J.},
+ Year = {2003},
+ Volume = {17},
+ Pages = {499--506},
+ Journal = {Journal of Magnetic Resonance Imaging: An Official Journal
+ of the International Society for Magnetic Resonance in
+ Medicine},
+ Number = {4}
+}
+
+@Article{ marlevi2020vwerpt,
+ Title = {Non-invasive estimation of relative pressure in turbulent
+ flow using virtual work-energy},
+ Author = {Marlevi, David and Ha, Hojin and Dillon-Murphy, Desmond
+ and Fernandes, Joao F and Fovargue, Daniel and
+ Colarieti-Tosti, Massimiliano and Larsson, Matilda and
+ Lamata, Pablo and Figueroa, C Alberto and Ebbers, Tino and
+ others},
+ Journal = {Medical Image Analysis},
+ Volume = {60},
+ Pages = {101627},
+ Year = {2020},
+ Publisher = {Elsevier}
+}
+
+@Article{ marlevi_estimation_2019,
+ langid = {english},
+ Title = {Estimation of {{Cardiovascular Relative Pressure Using
+ Virtual Work}}-{{Energy}}},
+ Volume = {9},
+ ISSN = {2045-2322},
+ URL = {http://www.nature.com/articles/s41598-018-37714-0},
+ DOI = {10.1038/s41598-018-37714-0},
+ Number = {1},
+ JournalTitle = {Scientific Reports},
+ URLDate = {2019-02-15},
+ Year = {2019-12},
+ Author = {Marlevi, David and Ruijsink, Bram and Balmus, Maximilian
+ and Dillon-Murphy, Desmond and Fovargue, Daniel and
+ Pushparajah, Kuberan and Bertoglio, Crist\'obal and
+ Colarieti-Tosti, Massimiliano and Larsson, Matilda and
+ Lamata, Pablo and Figueroa, C. Alberto and Razavi, Reza and
+ Nordsletten, David A.}
+}
+
+@Article{ marom2013bav,
+ Title = {Fully coupled fluid--structure interaction model of
+ congenital bicuspid aortic valves: effect of asymmetry on
+ hemodynamics},
+ Author = {Marom, G. and Kim, H. and Rosenfeld, M. and Raanani, E.
+ and Haj-Ali, R.},
+ Journal = {Medical \& biological engineering \& computing},
+ Volume = {51},
+ Number = {8},
+ Pages = {839--848},
+ Year = {2013},
+ Publisher = {Springer}
+}
+
+@Article{ maronnier-picasso-rappaz-99,
+ Author = {Maronnier, V. and Picasso, M. and Rappaz, J.},
+ Journal = {J. Comput. Phys.},
+ Number = {2},
+ Pages = {439--455},
+ Title = {Numerical simulation of free surface flows},
+ Volume = {155},
+ Year = {1999}
+}
+
+###Article{ maronnier-picasso-rappaz-99,
+ Author = {Maronnier, V. and Picasso, M. and Rappaz, J.},
+ Journal = {J. Comput. Phys.},
+ Number = {2},
+ Pages = {439--455},
+ Title = {Numerical simulation of free surface flows},
+ Volume = {155},
+ Year = {1999}
+}
+
+@Article{ martin-clement-decoene-gerbeau-05,
+ Author = {Martin, V. and Cl\'ement, F. and Decoene, A. and Gerbeau,
+ J-F.},
+ Title = {Parameter identification for a one-dimensional blood flow
+ model},
+ Journal = {ESAIM-Proceedings},
+ Year = {2005},
+ Pages = {174-200},
+ DOI = "10.1051/proc:2005014",
+ Volume = {14}
+}
+
+###Article{ martin-clement-decoene-gerbeau-05,
+ Author = {Martin, V. and Cl\'ement, F. and Decoene, A. and Gerbeau,
+ J-F.},
+ Title = {Parameter identification for a one-dimensional blood flow
+ model},
+ Journal = {ESAIM-Proceedings},
+ Year = {2005},
+ Pages = {174-200},
+ DOI = "10.1051/proc:2005014",
+ URL = "http://dx.doi.org/10.1051/proc:2005014",
+ Volume = {14}
+}
+
+@Article{ martin-witkowski-marty-98,
+ Annote = {mhd},
+ Author = {Martin Witkowski, L. and Marty, P.},
+ code = {mhd38},
+ Journal = {Eur. J. Mech., B/Fluids},
+ Number = {2},
+ Pages = {239-254},
+ Title = {Effect of a rotating magnetic field of arbitrary frequency
+ on a liquid metal column},
+ Volume = {17},
+ Year = {1998}
+}
+
+###Article{ martin-witkowski-marty-98,
+ Annote = {mhd},
+ Author = {Martin Witkowski, L. and Marty, P.},
+ code = {mhd38},
+ Journal = {Eur. J. Mech., B/Fluids},
+ Number = {2},
+ Pages = {239-254},
+ Title = {Effect of a rotating magnetic field of arbitrary frequency
+ on a liquid metal column},
+ Volume = {17},
+ Year = {1998}
+}
+
+@Article{ masson2008cha,
+ Title = {Characterization of arterial wall mechanical behavior and
+ stresses from human clinical data.},
+ Author = {Masson, I. and Boutouyrie, P. and Laurent, S. and
+ Humphrey, J.D. and Zidi, M.},
+ Journal = {Journal of Biomechanics},
+ Year = {2008},
+ Abstract = {This paper demonstrates the feasibility of material
+ identification and wall stress computation for human common
+ carotid arteries based on non-invasive in vivo clinical
+ data: dynamical intraluminal pressure measured by
+ applanation tonometry, and medial diameter and
+ intimal-medial thickness measured by high-resolution
+ ultrasound echotracking. The mechanical behavior was
+ quantified assuming an axially pre-stretched, thick-walled,
+ cylindrical artery subjected to dynamical blood pressure
+ and perivascular constraints. The wall was further assumed
+ to be three-dimensional and to consist of a nonlinear,
+ hyperelastic, anisotropic, incompressible material with
+ smooth muscle activity and residual stresses. Mechanical
+ contributions by individual constituents-an
+ elastin-dominated matrix, collagen fibers, and vascular
+ smooth muscle-were accounted for using a previously
+ proposed microstructurally motivated constitutive relation.
+ The in vivo boundary value problem was solved
+ semi-analytically to compute the inner pressure during a
+ mean cardiac cycle. Using a nonlinear least-squares method,
+ optimal model parameters were determined by minimizing
+ differences between computed and measured inner pressures
+ over a mean cardiac cycle. The fit-to-data from two healthy
+ patients was very good and the predicted radial,
+ circumferential, and axial stretch and stress fields were
+ sensible. Hence, the proposed approach was able to identify
+ complex geometric and material parameters directly from
+ non-invasive in vivo human data.}
+}
+
+###Article{ masson2008cha,
+ Title = {Characterization of arterial wall mechanical behavior and
+ stresses from human clinical data.},
+ Author = {Masson, I. and Boutouyrie, P. and Laurent, S. and
+ Humphrey, J.D. and Zidi, M.},
+ Journal = {Journal of Biomechanics},
+ Year = {2008},
+ Abstract = {This paper demonstrates the feasibility of material
+ identification and wall stress computation for human common
+ carotid arteries based on non-invasive in vivo clinical
+ data: dynamical intraluminal pressure measured by
+ applanation tonometry, and medial diameter and
+ intimal-medial thickness measured by high-resolution
+ ultrasound echotracking. The mechanical behavior was
+ quantified assuming an axially pre-stretched, thick-walled,
+ cylindrical artery subjected to dynamical blood pressure
+ and perivascular constraints. The wall was further assumed
+ to be three-dimensional and to consist of a nonlinear,
+ hyperelastic, anisotropic, incompressible material with
+ smooth muscle activity and residual stresses. Mechanical
+ contributions by individual constituents-an
+ elastin-dominated matrix, collagen fibers, and vascular
+ smooth muscle-were accounted for using a previously
+ proposed microstructurally motivated constitutive relation.
+ The in vivo boundary value problem was solved
+ semi-analytically to compute the inner pressure during a
+ mean cardiac cycle. Using a nonlinear least-squares method,
+ optimal model parameters were determined by minimizing
+ differences between computed and measured inner pressures
+ over a mean cardiac cycle. The fit-to-data from two healthy
+ patients was very good and the predicted radial,
+ circumferential, and axial stretch and stress fields were
+ sensible. Hence, the proposed approach was able to identify
+ complex geometric and material parameters directly from
+ non-invasive in vivo human data.}
+}
+
+@Book{ matlab2013,
+ Year = {2013},
+ Author = {MATLAB},
+ Title = {version 8.2.0.701 (R2013b)},
+ Publisher = {The MathWorks Inc.},
+ Address = {Natick, Massachusetts}
+}
+
+@InProceedings{ matthies-steindorf-01,
+ Author = {Matthies, H. G. and Steindorf, J.},
+ BookTitle = {Computational Fluid and Solid Mechanics},
+ code = {fsi6},
+ Editor = {K.J. Bathe},
+ Pages = {1317-1319},
+ Publisher = {Elsevier},
+ Title = {How to make weak coupling strong},
+ Year = {2001}
+}
+
+###InProceedings{ matthies-steindorf-01,
+ Author = {Matthies, H. G. and Steindorf, J.},
+ BookTitle = {Computational Fluid and Solid Mechanics},
+ code = {fsi6},
+ Editor = {K.J. Bathe},
+ Pages = {1317-1319},
+ Publisher = {Elsevier},
+ Title = {How to make weak coupling strong},
+ Year = {2001}
+}
+
+@Article{ matthies-steindorf-02,
+ Author = {Matthies, H.G. and Steindorf, J.},
+ code = {fsi7},
+ Journal = {Comp. \& Struct.},
+ Number = {27--30},
+ Pages = {1991--1999},
+ Title = {Partitioned but strongly coupled iteration schemes for
+ nonlinear fluid-structure interaction},
+ Volume = {80},
+ Year = {2002}
+}
+
+###Article{ matthies-steindorf-02,
+ Author = {Matthies, H.G. and Steindorf, J.},
+ code = {fsi7},
+ Journal = {Comp. \& Struct.},
+ Number = {27--30},
+ Pages = {1991--1999},
+ Title = {Partitioned but strongly coupled iteration schemes for
+ nonlinear fluid-structure interaction},
+ Volume = {80},
+ Year = {2002}
+}
+
+@TechReport{ matthies-steindorf-02b,
+ Author = {Matthies, H.G. and Steindorf, J.},
+ Institution = {TU Braunschweig},
+ Title = {Strong coupling methods},
+ Year = {2002}
+}
+
+###TechReport{ matthies-steindorf-02b,
+ Author = {Matthies, H.G. and Steindorf, J.},
+ Institution = {TU Braunschweig},
+ Title = {Strong coupling methods},
+ Year = {2002}
+}
+
+@Article{ matthies-steindorf-02c,
+ Author = {Matthies, H.G. and Steindorf, J.},
+ code = {fsi7},
+ Journal = {Comp. \& Struct.},
+ Number = {27--30},
+ Pages = {1991--1999},
+ Title = {Partitioned but strongly coupled iteration schemes for
+ nonlinear fluid-structure interaction},
+ Volume = {80},
+ Year = {2002}
+}
+
+###Article{ matthies-steindorf-02c,
+ Author = {Matthies, H.G. and Steindorf, J.},
+ code = {fsi7},
+ Journal = {Comp. \& Struct.},
+ Number = {27--30},
+ Pages = {1991--1999},
+ Title = {Partitioned but strongly coupled iteration schemes for
+ nonlinear fluid-structure interaction},
+ Volume = {80},
+ Year = {2002}
+}
+
+@Article{ matthies-steindorf-03,
+ Author = {Matthies, H.G. and Steindorf, J. },
+ Journal = {Comp. \& Struct.},
+ Pages = {805-812},
+ Title = {Partitioned strong coupling algorithms for fluid-structure
+ interaction},
+ Volume = {81},
+ Year = {2003}
+}
+
+###Article{ matthies-steindorf-03,
+ Author = {Matthies, H.G. and Steindorf, J. },
+ Journal = {Comp. \& Struct.},
+ Pages = {805-812},
+ Title = {Partitioned strong coupling algorithms for fluid-structure
+ interaction},
+ Volume = {81},
+ Year = {2003}
+}
+
+@Article{ maury-96,
+ Author = {Maury, B.},
+ Journal = {Comp. Fluid. Dyn.},
+ Pages = {175-188},
+ Title = {Characteristics {ALE} methods for the unsteady {3D
+ Navier-Stokes} equations with a free surface},
+ Volume = 6,
+ Year = 1996
+}
+
+###Article{ maury-96,
+ Author = {Maury, B.},
+ Journal = {Comp. Fluid. Dyn.},
+ Pages = {175-188},
+ Title = {Characteristics {ALE} methods for the unsteady {3D
+ Navier-Stokes} equations with a free surface},
+ Volume = 6,
+ Year = 1996
+}
+
+@Article{ maury-99,
+ Author = {Maury, B.},
+ Journal = {J. Comput. Phys.},
+ Number = {2},
+ Pages = {325--351},
+ Title = {Direct simulations of {$2$}{D} fluid-particle flows in
+ biperiodic domains},
+ Volume = {156},
+ Year = {1999}
+}
+
+###Article{ maury-99,
+ Author = {Maury, B.},
+ Journal = {J. Comput. Phys.},
+ Number = {2},
+ Pages = {325--351},
+ Title = {Direct simulations of {$2$}{D} fluid-particle flows in
+ biperiodic domains},
+ Volume = {156},
+ Year = {1999}
+}
+
+@Article{ maynewmann1998pbmb,
+ Title = {Homogenization modeling for the mechanics of perfused
+ myocardium},
+ Author = {May-Newmann, Karen and McCulloch, Andrew},
+ Journal = {Progress in Biophysics and Molecular Biology},
+ Year = {0079},
+ Pages = {463--481},
+ Volume = {69},
+ BookTitle = {Progress in Biophysics and Molecular Biology},
+ File = {:MayNewmann1998PBMB.pdf:PDF},
+ Keywords = {Perfusion, Coronary artery, Microvessels, Coronary blood
+ flow},
+ review = {Pro g r e s s i n
+
+ Biophysics & Molecular
+
+ Biology PERGAMON Progress in Biophysics & Molecular Biology
+ 69 (1998) 463?481
+
+ Homogenization modeling for the mechanics of perfused
+ myocardium
+
+ Karen May-Newman 1, Andrew D. McCulloch *
+
+ Department of Bioengineering, University of California San
+ Diego, 9500 Gilman Drive, La Jolla, CA 92093-0412, USA
+
+ Abstract
+
+ Altered coronary perfusion can change the apparent
+ diastolic stiÂness of ventricular myocardium?the ?garden
+ hose? eÂect. Our recent findings showed that myocardial
+ strains are reduced during ventricular filling, primarily
+ along the directions transverse to the coronary
+ microvessels. In this article, we review hypotheses and
+ theoretical models regarding the role that regional wall
+ stress plays in the mechanical interaction between
+ myocardium and coronary circulation. Various mechanisms
+ have been used to explain the eÂects of the tissue stress
+ on coronary flow, as well as the eÂect of coronary
+ dynamics on myocardial mechanics. Many models of coronary
+ pressure-flow relations using lumped parameter circuit
+ analogs. Poroelasticity and swelling theories have been
+ used to model the mechanics of perfused muscle. Here, we
+ describe a new mathematical model of the mechanics of
+ perfused myocardium derived using homogenization theory. In
+ this model, perfused myocardium is treated as a nonlinear
+ anisotropic elastic solid embedded with cylindrical vessels
+ of known distensibility. The solid compartment is
+ incompressible but the vascular compartment may change
+ volume according to a simple relation between vessel
+ diameter and perfusion pressure. The work done by the
+ perfusion pressure in changing vascular volume contributes
+ to the macroscopic strain energy and hence aÂects the
+ stress and stiÂness of the composite. Conversely, the
+ stress in the tissue aÂects microvessel diameter and
+ volume, since tractions transverse to the vessel axis
+ oppose the internal blood pressure. Finite element
+ simulations of passive filling show good agreement of model
+ with experimental results. # 1998 Elsevier Science Ltd. All
+ rights reserved.
+
+ Keywords: Stress; Strain; Coronary artery; Microvessels;
+ Coronary blood flow
+
+ * Corresponding author. Fax: +1-619-534-2547; E-mail:
+ amcculloch@ucsd.edu 1 Present address: Alliance
+ Pharmaceutical Corp., San Diego, CA 92121, USA.
+
+ 0079-6107/98/$19.00 # 1998 Elsevier Science Ltd. All rights
+ reserved. PII: S0079-6107(98)00020-0}
+}
+
+@Article{ mayo2009radiation,
+ Title = {Radiation dose in cardiac CT},
+ Author = {Mayo, John R and Leipsic, Jonathon A},
+ Journal = {American journal of roentgenology},
+ Volume = {192},
+ Number = {3},
+ Pages = {646--653},
+ Year = {2009},
+ Publisher = {Am Roentgen Ray Soc}
+}
+
+@Article{ mcalister2007jama,
+ Title = {Cardiac resynchronization therapy for patients with left
+ ventricular systolic dysfunction: A systematic review},
+ Author = {McAlister, Finlay A. and Ezekowitz, Justin and Hooton,
+ Nicola and et al},
+ Journal = {JAMA},
+ Year = {2007},
+ Number = {22},
+ Pages = {2502-2514},
+ Volume = {297},
+ DOI = {10.1001/jama.297.22.2502},
+ EPrint = {/data/Journals/JAMA/5174/jcr70006_2502_2514.pdf},
+ File = {mcalister07.pdf:mcalister07.pdf:PDF},
+ timestamp = {2015/09/14},
+ URL = { + http://dx.doi.org/10.1001/jama.297.22.2502}
+}
+
+@Article{ mcgill_preventing_2008,
+ langid = {english},
+ Title = {Preventing Heart Disease in the 21st Century: Implications
+ of the {{Pathobiological Determinants}} of
+ {{Atherosclerosis}} in {{Youth}} ({{PDAY}}) Study},
+ Volume = {117},
+ ISSN = {1524-4539},
+ DOI = {10.1161/CIRCULATIONAHA.107.717033},
+ ShortTitle = {Preventing Heart Disease in the 21st Century},
+ Number = {9},
+ JournalTitle = {Circulation},
+ ShortJournal = {Circulation},
+ Year = {2008-03-04},
+ Pages = {1216-1227},
+ Author = {McGill, Henry C. and McMahan, C. Alex and Gidding, Samuel
+ S.},
+ EPrintType = {pmid},
+ EPrint = {18316498}
+}
+
+@Article{ mckay1986circ,
+ Title = {Left ventricular remodeling after myocardial infarction: a
+ corollary to infarct expansion.},
+ Author = {McKay, R G and Pfeffer, M A and Pasternak, R C and Markis,
+ J E and Come, P C and Nakao, S and Alderman, J D and
+ Ferguson, J J and Safian, R D and Grossman, W},
+ Journal = {Circulation},
+ Year = {1986},
+ Number = {4},
+ Pages = {693-702},
+ Volume = {74},
+ Abstract = {Dilatation of infarcted segments (infarct expansion) may
+ occur during recovery from myocardial infarction, but the
+ fate of noninfarcted segments is uncertain. Accordingly,
+ left ventricular geometric changes were assessed by left
+ ventricular angiography and M mode echocardiography on
+ admission and 2 weeks later in 30 patients with their first
+ acute transmural myocardial infarction. All patients
+ demonstrated chest pain, ST segment elevation with
+ subsequent development of Q waves (15 anterior, 15
+ inferior), and elevation of cardiac enzymes. Sequential
+ left ventricular angiographic and hemodynamic findings were
+ available in these patients by virtue of their
+ participation in a study of thrombolysis in acute
+ myocardial infarction. By that study design, all patients
+ treated successfully with thrombolytic therapy and
+ demonstrating improvement of flow in an occluded coronary
+ artery underwent repeat cardiac catheterization. At 2 weeks
+ there was a significant decrease in left ventricular and
+ pulmonary capillary wedge pressures (p less than .01),
+ whereas both left ventricular end-diastolic (LVEDV) and
+ end-systolic (LVESV) volume indexes increased (p less than
+ .01). The increase in LVEDV correlated directly with the
+ percentage of the ventriculographic silhouette that was
+ akinetic or dyskinetic at the initial catheterization (r =
+ .71, p less than .001). To assess regional changes in both
+ infarcted and noninfarcted segments, serial endocardial
+ perimeter lengths of both the akinetic-dyskinetic segments
+ (infarction zone) and of the remainder of the cardiac
+ silhouette (noninfarction zone) were measured in all
+ patients who demonstrated at least a 20% increase in their
+ LVEDV at 2 weeks after myocardial infarction. Notably,
+ there was a mean increase of 13% in the endocardial
+ perimeter length of infarcted segments and a 19% increase
+ in the endocardial perimeter length of noninfarcted
+ segments. Serial M mode echocardiographic studies showed no
+ significant change in the wall thickness of noninfarcted
+ myocardial segments. Hemodynamic changes that occurred in
+ this subgroup of patients included significant decreases in
+ left ventricular end-diastolic and pulmonary capillary
+ wedge pressures (p less than .05) and significant increases
+ in angiographic cardiac index (p less than .01) and LVESV
+ index (p less than .01). We conclude that in patients who
+ manifest cardiac dilatation in the early convalescent
+ period after myocardial infarction, there is remodeling of
+ the entire left ventricle including infarct expansion of
+ akinetic-dyskinetic segments and volume-overload
+ hypertrophy of noninfarcted segments.(ABSTRACT TRUNCATED AT
+ 400 WORDS)},
+ DOI = {10.1161/01.CIR.74.4.693},
+ EPrint = {http://circ.ahajournals.org/content/74/4/693.full.pdf+html},
+ File = {mckay86.pdf:mckay86.pdf:PDF},
+ timestamp = {2015/09/14},
+ URL = {http://circ.ahajournals.org/content/74/4/693.abstract}
+}
+
+@Article{ mcmurray2012,
+ Title = {ESC guidelines for the diagnosis and treatment of acute
+ and chronic heart failure 2012: The Task Force for the
+ Diagnosis and Treatment of Acute and Chronic Heart Failure
+ 2012 of the European Society of Cardiology. Developed in
+ collaboration with the Heart Failure Association (HFA) of
+ the ESC.},
+ Author = {McMurray, John J V. and Adamopoulos, Stamatis and Anker,
+ Stefan D. and Auricchio, Angelo and B{\"{o}}hm, Michael and
+ Dickstein, Kenneth and Falk, Volkmar and Filippatos,
+ Gerasimos and Fonseca, C{\^{a}}ndida and Gomez-Sanchez,
+ Miguel Angel and Jaarsma, Tiny and K{\o}ber, Lars and Lip,
+ Gregory Y H. and Maggioni, Aldo Pietro and Parkhomenko,
+ Alexander and Pieske, Burkert M. and Popescu, Bogdan A. and
+ R{\o}nnevik, Per K. and Rutten, Frans H. and Schwitter,
+ Juerg and Seferovic, Petar and Stepinska, Janina and
+ Trindade, Pedro T. and Voors, Adriaan A. and Zannad, Faiez
+ and Zeiher, Andreas and , Task Force for the Diagnosis and
+ Treatment of Acute and Chronic Heart Failure 2012 of the
+ European Society of Cardiology and Bax, Jeroen J. and
+ Baumgartner, Helmut and Ceconi, Claudio and Dean, Veronica
+ and Deaton, Christi and Fagard, Robert and Funck-Brentano,
+ Christian and Hasdai, David and Hoes, Arno and Kirchhof,
+ Paulus and Knuuti, Juhani and Kolh, Philippe and McDonagh,
+ Theresa and Moulin, Cyril and Popescu, Bogdan A. and
+ Reiner, Zeljko and Sechtem, Udo and Sirnes, Per Anton and
+ Tendera, Michal and Torbicki, Adam and Vahanian, Alec and
+ Windecker, Stephan and McDonagh, Theresa and Sechtem, Udo
+ and Bonet, Luis Almenar and Avraamides, Panayiotis and {Ben
+ Lamin}, Hisham A. and Brignole, Michele and Coca, Antonio
+ and Cowburn, Peter and Dargie, Henry and Elliott, Perry and
+ Flachskampf, Frank Arnold and Guida, Guido Francesco and
+ Hardman, Suzanna and Iung, Bernard and Merkely, Bela and
+ Mueller, Christian and Nanas, John N. and Nielsen, Olav
+ Wendelboe and Orn, Stein and Parissis, John T. and
+ Ponikowski, Piotr and , E. S. C Committee for Practice
+ Guidelines},
+ Journal = {Eur J Heart Fail},
+ Year = {2012},
+ Month = {Aug},
+ Number = {8},
+ Pages = {803--869},
+ Volume = {14},
+ Institution = {Glasgow G12 8QQ, UK. john.mcmurray@glasgow.ac.uk},
+ Keywords = {Algorithms; Antihypertensive Agents, therapeutic use;
+ Cardiotonic Agents, therapeutic use; Europe; Heart Failure,
+ diagnosis/drug therapy; Humans; Natriuretic Peptides;
+ Renin-Angiotensin System; Societies, Medical; Stroke
+ Volume; Ventricular Function, Left},
+ Language = {eng},
+ medline-pst = {ppublish},
+ owner = {stoeckc},
+ pmid = {22828712},
+ timestamp = {2015.07.24}
+}
+
+@Book{ medscape,
+ Title = {{Medscape Reference. Coarctation of the Aorta}},
+ Author = {Syamasundar, R. and Seib, P.},
+ Year = {2011}
+}
+
+###Book{ medscape,
+ Title = {{Medscape Reference. Coarctation of the Aorta}},
+ Author = {Syamasundar, R. and Seib, P.},
+ Address = {\url{http://emedicine.medscape.com/article/895502-overview}},
+ Year = {2011}
+}
+
+@InProceedings{ meier_non-invasive_2010,
+ Title = {Non-Invasive {{4D}} Blood Flow and Pressure Quantification
+ in Central Blood Vessels via {{PC}}-{{MRI}}},
+ BookTitle = {Computing in {{Cardiology}}, 2010},
+ Publisher = {{IEEE}},
+ Year = {2010},
+ Pages = {903--906},
+ Author = {Meier, Sebastian and Hennemuth, Anja and Friman, Ola and
+ Bock, Jelena and Markl, Michael and Preusser, Tobias}
+}
+
+@Article{ meir-95,
+ Annote = {mhd, existence},
+ Author = {Meir, A. J.},
+ code = {mhd4},
+ Journal = {Num. Meth. Partial Diff. Eq.},
+ Pages = {311-337},
+ Title = {Thermally coupled, stationary, incompressible MHD flow;
+ existence, uniqueness, and finite element approximation},
+ Volume = {11},
+ Year = {1995}
+}
+
+###Article{ meir-95,
+ Annote = {mhd, existence},
+ Author = {Meir, A. J.},
+ code = {mhd4},
+ Journal = {Num. Meth. Partial Diff. Eq.},
+ Pages = {311-337},
+ Title = {Thermally coupled, stationary, incompressible MHD flow;
+ existence, uniqueness, and finite element approximation},
+ Volume = {11},
+ Year = {1995}
+}
+
+@Article{ meir-schmidt-94,
+ Annote = {mhd, existence},
+ Author = {Meir, A.J. and Schmidt, P.G.},
+ code = {mhd5},
+ Journal = {Appl. Math. Comp.},
+ Pages = {95-109},
+ Title = {A velocity-current formulation for stationary {MHD} flow},
+ Volume = {65},
+ Year = {1994}
+}
+
+###Article{ meir-schmidt-94,
+ Annote = {mhd, existence},
+ Author = {Meir, A.J. and Schmidt, P.G.},
+ code = {mhd5},
+ Journal = {Appl. Math. Comp.},
+ Pages = {95-109},
+ Title = {A velocity-current formulation for stationary {MHD} flow},
+ Volume = {65},
+ Year = {1994}
+}
+
+@Article{ meir-schmidt-96,
+ Annote = {mhd, boundary integral},
+ Author = {Meir, A.J. and Schmidt, P.G.},
+ code = {mhd6},
+ Journal = {Nonlinear Anal., Theo. Meth. Appl.},
+ Number = {4},
+ Pages = {659-689},
+ Title = {Variational methods for stationary {MHD} flow under
+ natural interface conditions},
+ Volume = {26},
+ Year = {1996}
+}
+
+###Article{ meir-schmidt-96,
+ Annote = {mhd, boundary integral},
+ Author = {Meir, A.J. and Schmidt, P.G.},
+ code = {mhd6},
+ Journal = {Nonlinear Anal., Theo. Meth. Appl.},
+ Number = {4},
+ Pages = {659-689},
+ Title = {Variational methods for stationary {MHD} flow under
+ natural interface conditions},
+ Volume = {26},
+ Year = {1996}
+}
+
+@Article{ meir-schmidt-99,
+ Annote = {mhd, finite element},
+ Author = {Meir, A.J. and Schmidt, P.G.},
+ code = {mhd10},
+ Journal = {SIAM J. Numer. Anal.},
+ Number = {4},
+ Pages = {1304-1332},
+ Title = {Analysis and numerical approximation of a stationnary
+ {MHD} flow problem with nonideal boundary},
+ Volume = {36},
+ Year = {1999}
+}
+
+###Article{ meir-schmidt-99,
+ Annote = {mhd, finite element},
+ Author = {Meir, A.J. and Schmidt, P.G.},
+ code = {mhd10},
+ Journal = {SIAM J. Numer. Anal.},
+ Number = {4},
+ Pages = {1304-1332},
+ Title = {Analysis and numerical approximation of a stationnary
+ {MHD} flow problem with nonideal boundary},
+ Volume = {36},
+ Year = {1999}
+}
+
+@Article{ mendelsohn1994late,
+ Title = {Late follow-up of balloon angioplasty in children with a
+ native coarctation of the aorta},
+ Author = {Mendelsohn, Alan M and Lloyd, Thomas R and Crowley, Dennis
+ C and Sandhu, Satinder K and Kocis, Keith C and Beekman,
+ Robert H},
+ Journal = {The American journal of cardiology},
+ Volume = {74},
+ Number = {7},
+ Pages = {696--700},
+ Year = {1994},
+ Publisher = {Elsevier}
+}
+
+###Article{ mendelsohn1994late,
+ Title = {Late follow-up of balloon angioplasty in children with a
+ native coarctation of the aorta},
+ Author = {Mendelsohn, Alan M and Lloyd, Thomas R and Crowley, Dennis
+ C and Sandhu, Satinder K and Kocis, Keith C and Beekman,
+ Robert H},
+ Journal = {The American journal of cardiology},
+ Volume = {74},
+ Number = {7},
+ Pages = {696--700},
+ Year = {1994},
+ Publisher = {Elsevier}
+}
+
+@Article{ menon2012coupled,
+ Title = {A coupled experimental and computational approach to
+ quantify deleterious hemodynamics, vascular alterations,
+ and mechanisms of long-term morbidity in response to aortic
+ coarctation},
+ Author = {Menon, Arjun and Wendell, David C and Wang, Hongfeng and
+ Eddinger, Thomas J and Toth, Jeffrey M and Dholakia, Ronak
+ J and Larsen, Paul M and Jensen, Eric S and LaDisa, John
+ F},
+ Journal = {Journal of pharmacological and toxicological methods},
+ Volume = {65},
+ Number = {1},
+ Pages = {18--28},
+ Year = {2012},
+ Publisher = {Elsevier}
+}
+
+###Article{ menon2012coupled,
+ Title = {A coupled experimental and computational approach to
+ quantify deleterious hemodynamics, vascular alterations,
+ and mechanisms of long-term morbidity in response to aortic
+ coarctation},
+ Author = {Menon, Arjun and Wendell, David C and Wang, Hongfeng and
+ Eddinger, Thomas J and Toth, Jeffrey M and Dholakia, Ronak
+ J and Larsen, Paul M and Jensen, Eric S and LaDisa, John
+ F},
+ Journal = {Journal of pharmacological and toxicological methods},
+ Volume = {65},
+ Number = {1},
+ Pages = {18--28},
+ Year = {2012},
+ Publisher = {Elsevier}
+}
+
+@Article{ menzel2012mrc,
+ Title = {Frontiers in growth and remodeling },
+ Author = {Andreas Menzel and Ellen Kuhl},
+ Journal = {Mechanics Research Communications },
+ Year = {2012},
+ Note = {Recent Advances in the Biomechanics of Growth and
+ Remodeling },
+ Pages = {1 - 14},
+ Volume = {42},
+ Abstract = {Unlike common engineering materials, living matter can
+ autonomously respond to environmental changes. Living
+ structures can grow stronger, weaker, larger, or smaller
+ within months, weeks, or days as a result of a continuous
+ microstructural turnover and renewal. Hard tissues can
+ adapt by increasing their density and grow strong. Soft
+ tissues can adapt by increasing their volume and grow
+ large. For more than three decades, the mechanics community
+ has actively contributed to understand the phenomena of
+ growth and remodeling from a mechanistic point of view.
+ However, to date, there is no single, unified
+ characterization of growth, which is equally accepted by
+ all scientists in the field. Here we shed light on the
+ continuum modeling of growth and remodeling of living
+ matter, and give a comprehensive overview of historical
+ developments and trends. We provide a state-of-the-art
+ review of current research highlights, and discuss
+ challenges and potential future directions. Using the
+ example of volumetric growth, we illustrate how we can
+ establish and utilize growth theories to characterize the
+ functional adaptation of soft living matter. We anticipate
+ this review to be the starting point for critical
+ discussions and future research in growth and remodeling,
+ with a potential impact on life science and medicine. },
+ DOI = {http://dx.doi.org/10.1016/j.mechrescom.2012.02.007},
+ File = {menzel12.pdf:menzel12.pdf:PDF},
+ ISSN = {0093-6413},
+ Keywords = {Living matter},
+ URL = {http://www.sciencedirect.com/science/article/pii/S0093641312000225}
+}
+
+@Unpublished{ metier-02,
+ Author = {M{\'e}tier, P.},
+ Note = {Universit{\'e} Paris 6},
+ Title = {PhD in preparation}
+}
+
+###Unpublished{ metier-02,
+ Author = {M{\'e}tier, P.},
+ Note = {Universit{\'e} Paris 6},
+ Title = {PhD in preparation}
+}
+
+@Unpublished{ meyer-98,
+ Author = {Meyer, Y.},
+ Note = {to appear},
+ Title = {Wavelets, paraproducts and {Navier-Stokes} equations},
+ Year = {1998}
+}
+
+###Unpublished{ meyer-98,
+ Author = {Meyer, Y.},
+ Note = {to appear},
+ Title = {Wavelets, paraproducts and {Navier-Stokes} equations},
+ Year = {1998}
+}
+
+@Article{ michler-hulshoff-van-brummelen-de-borst-04,
+ Author = {Michler, C. and Hulshoff, S.J. and van Brummelen, E.H. and
+ de Borst, R.},
+ Journal = {Comp. \& Fluids},
+ Number = {5-6},
+ Pages = {839-848},
+ Title = {A monolithic approach to fluid-structure interaction},
+ Year = {2004}
+}
+
+###Article{ michler-hulshoff-van-brummelen-de-borst-04,
+ Author = {Michler, C. and Hulshoff, S.J. and van Brummelen, E.H. and
+ de Borst, R.},
+ Journal = {Comp. \& Fluids},
+ Number = {5-6},
+ Pages = {839-848},
+ Title = {A monolithic approach to fluid-structure interaction},
+ Year = {2004}
+}
+
+@Article{ michler-van-brummelen-de-borst-05,
+ Author = {Michler, C. and van Brummelen, E.H. and de Borst, R.},
+ Journal = {Int. J. Num. Meth. Fluids},
+ Number = {10-11},
+ Pages = {1189-1195},
+ Title = {An interface {Newton-Krylov} solver for fluid-structure
+ interaction},
+ Volume = {47},
+ Year = {2005}
+}
+
+###Article{ michler-van-brummelen-de-borst-05,
+ Author = {Michler, C. and van Brummelen, E.H. and de Borst, R.},
+ Journal = {Int. J. Num. Meth. Fluids},
+ Number = {10-11},
+ Pages = {1189-1195},
+ Title = {An interface {Newton-Krylov} solver for fluid-structure
+ interaction},
+ Volume = {47},
+ Year = {2005}
+}
+
+@Article{ michler2013ijnmbe,
+ Title = {A computationally efficient framework for the simulation
+ of cardiac perfusion using a multi-compartment Darcy
+ porous-media flow model},
+ Author = {Michler, C. and Cookson, A. N. and Chabiniok, R. and Hyde,
+ E. and Lee, J. and Sinclair, M. and Sochi, T. and Goyal, A.
+ and Vigueras, G. and Nordsletten, D. A. and et al.},
+ Journal = {International Journal for Numerical Methods in Biomedical
+ Engineering},
+ Year = {2013},
+ Month = {Oct},
+ Number = {2},
+ Pages = {217--232},
+ Volume = {29},
+ DOI = {10.1002/cnm.2520},
+ File = {:Michler2012IJNMBE.pdf:PDF},
+ ISSN = {2040-7939},
+ Keywords = {Perfusion, Darcy, multicompartment},
+ Publisher = {Wiley-Blackwell},
+ URL = {http://dx.doi.org/10.1002/cnm.2520}
+}
+
+@Article{ miglio-quarteroni-saleri-99,
+ Author = {Miglio, E. and Quarteroni, A. and Saleri, F.},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Number = {3-4},
+ Pages = {355--369},
+ Title = {Finite element approximation of quasi-3{D} shallow water
+ equations},
+ Volume = {174},
+ Year = {1999}
+}
+
+###Article{ miglio-quarteroni-saleri-99,
+ Author = {Miglio, E. and Quarteroni, A. and Saleri, F.},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Number = {3-4},
+ Pages = {355--369},
+ Title = {Finite element approximation of quasi-3{D} shallow water
+ equations},
+ Volume = {174},
+ Year = {1999}
+}
+
+@InProceedings{ mihalef_model-based_2014,
+ langid = {english},
+ Title = {Model-{{Based Estimation}} of {{4D Relative Pressure Map}}
+ from {{4D Flow MR Images}}},
+ ISBN = {978-3-642-54268-8},
+ Abstract = {We propose a new framework for 4D relative pressure map
+ computations from 4D flow MRI that uses enhanced geometric
+ models for the blood vessels and flow-aware surface and
+ volumetric tags. The enhanced geometric modeling provides
+ better accuracy compared to a simple voxelized mask, while
+ tagging of inlets and outlets allows imposing
+ physiologically meaningful boundary conditions,
+ contributing to more accurate pressure computations. An
+ integrated software suite for semi-automatic processing of
+ 4D flow MR images, preparation and computation of the flow
+ parameters is presented. This enables a fast and intuitive
+ workflow, with accurate final results, ready in minutes.},
+ BookTitle = {Statistical {{Atlases}} and {{Computational Models}} of
+ the {{Heart}}. {{Imaging}} and {{Modelling Challenges}}},
+ Series = {Lecture {{Notes}} in {{Computer Science}}},
+ Publisher = {{Springer Berlin Heidelberg}},
+ Year = {2014},
+ Pages = {236-243},
+ Author = {Mihalef, Viorel and Rapaka, Saikiran and Gulsun, Mehmet
+ and Scorza, Angelo and Sharma, Puneet and Itu, Lucian and
+ Kamen, Ali and Barker, Alex and Markl, Michael and
+ Comaniciu, Dorin},
+ Editor = {Camara, Oscar and Mansi, Tommaso and Pop, Mihaela and
+ Rhode, Kawal and Sermesant, Maxime and Young, Alistair}
+}
+
+@InCollection{ mikelic-00,
+ Address = {Berlin},
+ Author = {Mikeli{\'c}, A.},
+ BookTitle = {Filtration in porous media and industrial application
+ (Cetraro, 1998)},
+ Pages = {127--214},
+ Publisher = {Springer},
+ Series = {Lecture Notes in Math.},
+ Title = {Homogenization theory and applications to filtration
+ through porous media},
+ Volume = {1734},
+ Year = {2000}
+}
+
+###InCollection{ mikelic-00,
+ Address = {Berlin},
+ Author = {Mikeli{\'c}, A.},
+ BookTitle = {Filtration in porous media and industrial application
+ (Cetraro, 1998)},
+ Pages = {127--214},
+ Publisher = {Springer},
+ Series = {Lecture Notes in Math.},
+ Title = {Homogenization theory and applications to filtration
+ through porous media},
+ Volume = {1734},
+ Year = {2000}
+}
+
+@Article{ milner-moore-rutt-steinman-98,
+ Author = {Milner, J.S and Moore, J.A. and Rutt, B.K. and Steinman,
+ D.A.},
+ Journal = {Journal of vascular surgery},
+ Number = {1},
+ Pages = {143-156},
+ Title = {Hemodynamics of human carotid artery bifurcations:
+ computational studies with models reconstructed from
+ magnetic resonance imaging of normal subjects},
+ Volume = {27},
+ Year = {1998}
+}
+
+###Article{ milner-moore-rutt-steinman-98,
+ Author = {Milner, J.S and Moore, J.A. and Rutt, B.K. and Steinman,
+ D.A.},
+ Journal = {Journal of vascular surgery},
+ Number = {1},
+ Pages = {143-156},
+ Title = {Hemodynamics of human carotid artery bifurcations:
+ computational studies with models reconstructed from
+ magnetic resonance imaging of normal subjects},
+ Volume = {27},
+ Year = {1998}
+}
+
+@Article{ minakowski_finite_2019,
+ ArchivePrefix = {arXiv},
+ EPrintType = {arxiv},
+ EPrint = {1902.07532},
+ PrimaryClass = {math.NA},
+ Title = {Finite {{Element Error Estimates}} under {{Geometric
+ Uncertainty}}},
+ JournalTitle = {arXiv e-prints},
+ Date = {2019-02},
+ Pages = {arXiv:1902.07532},
+ Author = {Minakowski, Piotr and Richter, Thomas},
+ EID = {arXiv:1902.07532},
+ adsurl = {https://ui.adsabs.harvard.edu/\#abs/2019arXiv190207532M},
+ adsnote = {Provided by the SAO/NASA Astrophysics Data System}
+}
+
+###Article{ minakowski_finite_2019,
+ ArchivePrefix = {arXiv},
+ EPrintType = {arxiv},
+ EPrint = {1902.07532},
+ PrimaryClass = {math.NA},
+ Title = {Finite {{Element Error Estimates}} under {{Geometric
+ Uncertainty}}},
+ JournalTitle = {arXiv e-prints},
+ Year = {2019-02},
+ Pages = {arXiv:1902.07532},
+ Author = {Minakowski, Piotr and Richter, Thomas},
+ EID = {arXiv:1902.07532},
+ adsurl = {https://ui.adsabs.harvard.edu/\#abs/2019arXiv190207532M},
+ adsnote = {Provided by the SAO/NASA Astrophysics Data System}
+}
+
+@Article{ miracle,
+ Author = {Abraham, W.T. and Fisher, W.G. and Smith, A.L. and et al},
+ Journal = {The New England Journal of Medicine},
+ Pages = {1845-1853},
+ Title = {Cardiac resynchronization in Chronic Heart Failure},
+ Volume = {346},
+ Year = {2002}
+}
+
+###Article{ miracle,
+ Author = {Abraham, W.T. and Fisher, W.G. and Smith, A.L. and et al},
+ Journal = {The New England Journal of Medicine},
+ Pages = {1845-1853},
+ Title = {Cardiac resynchronization in Chronic Heart Failure},
+ Volume = {346},
+ Year = {2002}
+}
+
+@Article{ miranville,
+ Author = {Miranville, A. and Wang, X.},
+ Journal = {Disc. and Cont. Dyn. syst.},
+ Number = {1},
+ Pages = {95-110},
+ Title = {Upper bound on the dimension of the attractor for
+ nonhomogeneous {Navier-Stokes} equations},
+ Volume = {2},
+ Year = {1996}
+}
+
+###Article{ miranville,
+ Author = {Miranville, A. and Wang, X.},
+ Journal = {Disc. and Cont. Dyn. syst.},
+ Number = {1},
+ Pages = {95-110},
+ Title = {Upper bound on the dimension of the attractor for
+ nonhomogeneous {Navier-Stokes} equations},
+ Volume = {2},
+ Year = {1996}
+}
+
+@Article{ mirzaee_mri-based_2017,
+ langid = {english},
+ Title = {{{MRI}}-Based Computational Hemodynamics in Patients with
+ Aortic Coarctation Using the Lattice {{Boltzmann}} Methods:
+ {{Clinical}} Validation Study},
+ Volume = {45},
+ ISSN = {1522-2586},
+ URL = {https://onlinelibrary.wiley.com/doi/abs/10.1002/jmri.25366},
+ DOI = {10.1002/jmri.25366},
+ ShortTitle = {{{MRI}}-Based Computational Hemodynamics in Patients with
+ Aortic Coarctation Using the Lattice {{Boltzmann}}
+ Methods},
+ Abstract = {Purpose To introduce a scheme based on a recent technique
+ in computational hemodynamics, known as the lattice
+ Boltzmann methods (LBM), to noninvasively measure pressure
+ gradients in patients with a coarctation of the aorta
+ (CoA). To provide evidence on the accuracy of the proposed
+ scheme, the computed pressure drop values are compared
+ against those obtained using the reference standard method
+ of catheterization. Materials and Methods Pre- and
+ posttreatment LBM-based pressure gradients for 12 patients
+ with CoA were simulated for the time point of peak systole
+ using the open source library OpenLB. Four-dimensional (4D)
+ flow-sensitive phase-contrast MRI at 1.5 Tesla was used to
+ acquire flow and to setup the simulation. The vascular
+ geometry was reconstructed using 3D whole-heart MRI.
+ Patients underwent pre- and postinterventional pressure
+ catheterization as a reference standard. Results There is a
+ significant linear correlation between the pretreatment
+ catheter pressure drops and those computed based on the LBM
+ simulation, , . The bias was -0.58 ± 4.1 mmHg and was not
+ significant ( with a 95\% confidence interval (CI) of -3.22
+ to 2.06. For the posttreatment results, the bias was larger
+ and at -2.54 ± 3.53 mmHg with a 95\% CI of -0.17 to -4.91
+ mmHg. Conclusion The results indicate a reasonable
+ agreement between the simulation results and the catheter
+ measurements. LBM-based computational hemodynamics can be
+ considered as an alternative to more traditional
+ computational fluid dynamics schemes for noninvasive
+ pressure calculations and can assist in diagnosis and
+ therapy planning. Level of Evidence: 3 J. Magn. Reson.
+ Imaging 2017;45:139â146.},
+ Number = {1},
+ JournalTitle = {Journal of Magnetic Resonance Imaging},
+ URLDate = {2019-01-29},
+ Year = {2017},
+ Pages = {139-146},
+ Author = {Mirzaee, Hanieh and Henn, Thomas and Krause, Mathias J.
+ and Goubergrits, Leonid and Schumann, Christian and
+ Neugebauer, Mathias and Kuehne, Titus and Preusser, Tobias
+ and Hennemuth, Anja}
+}
+
+@Book{ modersitzki-04,
+ Title = {Numerical Methods for Image Registration},
+ Author = {Modersitzki, J.},
+ Year = {2004},
+ Publisher = {Oxford university press}
+}
+
+###Book{ modersitzki-04,
+ Title = {Numerical Methods for Image Registration},
+ Author = {Modersitzki, J.},
+ Year = {2004},
+ Publisher = {Oxford university press}
+}
+
+@Article{ moens-1878,
+ Title = {{Die Pulskurve}},
+ Volume = {},
+ Number = {},
+ Journal = {},
+ Publisher = {Leiden, The Netherlands:.J. Brill},
+ Author = {Moens, A.I.},
+ Year = {1878}
+}
+
+###Article{ moens-1878,
+ Title = {{Die Pulskurve}},
+ Volume = {},
+ URL = {http://www.archive.org/details/diepulscurve00iseb},
+ Number = {},
+ Journal = {},
+ Publisher = {Leiden, The Netherlands:.J. Brill},
+ Author = {Moens, A.I.},
+ Year = {1878}
+}
+
+@Article{ moghadam-bazilevs-etal-11,
+ hal_id = {hal-00650986},
+ Title = {{A comparison of outlet boundary treatments for prevention
+ of backflow divergence with relevance to blood flow
+ simulations}},
+ Author = {Moghadam, M. and Bazilevs, Y. and Hsia, T.-Y. and
+ Vignon-Clementel, I. and Marsden, A. and Modeling Of
+ Congenital Hearts Alliance Investigators, Mocha},
+ Abstract = {{Simulation divergence due to backflow is a common, but
+ not fully addressed, problem in three-dimensional
+ simulations of blood flow in the large vessels. Because
+ backflow is a naturally occurring physiologic phenomenon,
+ careful treatment is necessary to realistically model
+ backflow without artificially altering the local flow
+ dynamics. In this study, we quantitatively compare three
+ available methods for treatment of outlets to prevent
+ backflow divergence in finite element Navier-Stokes
+ solvers. The methods examined are (1) adding a
+ stabilization term to the boundary nodes formulation, (2)
+ constraining the velocity to be normal to the outlet, and
+ (3) using Lagrange multipliers to constrain the velocity
+ profile at all or some of the outlets. A modification to
+ the stabilization method is also discussed. Three model
+ problems, a short and long cylinder with an expansion, a
+ right-angle bend, and a patient-specific aorta model, are
+ used to evaluate and quantitatively compare these methods.
+ Detailed comparisons are made to evaluate robustness,
+ stability characteristics, impact on local and global flow
+ physics, computational cost, implementation effort, and
+ ease-of-use. The results show that the stabilization method
+ offers a promising alternative to previous methods, with
+ reduced effect on both local and global hemodynamics,
+ improved stability, little-to-no increase in computational
+ cost, and elimination of the need for tunable
+ parameters.}},
+ Keywords = {Neumann boundary conditions; Outflow stabilization;
+ Lagrange multipliers; Normal velocity constraint;
+ Patient-specific blood flow; Flow reversal; Navier-Stokes
+ FEM solver; Cardiovascular simulation},
+ Language = {Anglais},
+ affiliation = {Department of Mechanical and Aerospace Engineering - MAE ,
+ Department of Structural Engineering - UCSD , Great Ormond
+ Street Hospital for Children [London] - GOSH , Cardiac
+ Unit, Institute of Child Health - UCL , REO - INRIA
+ Rocquencourt},
+ BookTitle = {{Special issue on computational fluid mechanics and
+ fluid-structure interaction}},
+ Publisher = {Springer Verlag (Germany)},
+ Pages = {277-291},
+ Journal = {Computational Mechanics},
+ Volume = {48},
+ Number = {3 },
+ audience = {internationale },
+ collaboration = {EA cardio },
+ DOI = {10.1007/s00466-011-0599-0 },
+ Year = {2011}
+}
+
+###Article{ moghadam-bazilevs-etal-11,
+ hal_id = {hal-00650986},
+ URL = {http://hal.inria.fr/hal-00650986},
+ Title = {{A comparison of outlet boundary treatments for prevention
+ of backflow divergence with relevance to blood flow
+ simulations}},
+ Author = {Moghadam, M. and Bazilevs, Y. and Hsia, T.-Y. and
+ Vignon-Clementel, I. and Marsden, A. and Modeling Of
+ Congenital Hearts Alliance Investigators, Mocha},
+ Abstract = {{Simulation divergence due to backflow is a common, but
+ not fully addressed, problem in three-dimensional
+ simulations of blood flow in the large vessels. Because
+ backflow is a naturally occurring physiologic phenomenon,
+ careful treatment is necessary to realistically model
+ backflow without artificially altering the local flow
+ dynamics. In this study, we quantitatively compare three
+ available methods for treatment of outlets to prevent
+ backflow divergence in finite element Navier-Stokes
+ solvers. The methods examined are (1) adding a
+ stabilization term to the boundary nodes formulation, (2)
+ constraining the velocity to be normal to the outlet, and
+ (3) using Lagrange multipliers to constrain the velocity
+ profile at all or some of the outlets. A modification to
+ the stabilization method is also discussed. Three model
+ problems, a short and long cylinder with an expansion, a
+ right-angle bend, and a patient-specific aorta model, are
+ used to evaluate and quantitatively compare these methods.
+ Detailed comparisons are made to evaluate robustness,
+ stability characteristics, impact on local and global flow
+ physics, computational cost, implementation effort, and
+ ease-of-use. The results show that the stabilization method
+ offers a promising alternative to previous methods, with
+ reduced effect on both local and global hemodynamics,
+ improved stability, little-to-no increase in computational
+ cost, and elimination of the need for tunable
+ parameters.}},
+ Keywords = {Neumann boundary conditions; Outflow stabilization;
+ Lagrange multipliers; Normal velocity constraint;
+ Patient-specific blood flow; Flow reversal; Navier-Stokes
+ FEM solver; Cardiovascular simulation},
+ Language = {Anglais},
+ affiliation = {Department of Mechanical and Aerospace Engineering - MAE ,
+ Department of Structural Engineering - UCSD , Great Ormond
+ Street Hospital for Children [London] - GOSH , Cardiac
+ Unit, Institute of Child Health - UCL , REO - INRIA
+ Rocquencourt},
+ BookTitle = {{Special issue on computational fluid mechanics and
+ fluid-structure interaction}},
+ Publisher = {Springer Verlag (Germany)},
+ Pages = {277-291},
+ Journal = {Computational Mechanics},
+ Volume = {48},
+ Number = {3 },
+ audience = {internationale },
+ collaboration = {EA cardio },
+ DOI = {10.1007/s00466-011-0599-0 },
+ Year = {2011}
+}
+
+@Article{ moghadam-etal-11,
+ Title = "A modular numerical method for implicit 0D/3D coupling in
+ cardiovascular finite element simulations",
+ Journal = "Journal of Computational Physics",
+ Volume = "",
+ Number = "",
+ Pages = "",
+ Year = "2012",
+ Note = "",
+ ISSN = "0021-9991",
+ DOI = "10.1016/j.jcp.2012.07.035",
+ Author = "Moghadam, M.E. and Vignon-Clementel, I.E. and Figliola, R.
+ and Marsden, A.L.",
+ Keywords = "Multi-scale modeling"
+}
+
+###Article{ moghadam-etal-11,
+ Title = "A modular numerical method for implicit 0D/3D coupling in
+ cardiovascular finite element simulations",
+ Journal = "Journal of Computational Physics",
+ Volume = "",
+ Number = "",
+ Pages = "",
+ Year = "2012",
+ Note = "",
+ ISSN = "0021-9991",
+ DOI = "10.1016/j.jcp.2012.07.035",
+ URL = "http://www.sciencedirect.com/science/article/pii/S0021999112004202",
+ Author = "Moghadam, M.E. and Vignon-Clementel, I.E. and Figliola, R.
+ and Marsden, A.L.",
+ Keywords = "Multi-scale modeling"
+}
+
+@Book{ mohammadi-pironneau-94,
+ Address = {Paris},
+ Author = {Mohammadi, B. and Pironneau, O.},
+ Publisher = {Masson},
+ Title = {Analysis of the $k$-epsilon turbulence model},
+ Year = {1994}
+}
+
+###Book{ mohammadi-pironneau-94,
+ Address = {Paris},
+ Author = {Mohammadi, B. and Pironneau, O.},
+ Publisher = {Masson},
+ Title = {Analysis of the $k$-epsilon turbulence model},
+ Year = {1994}
+}
+
+@Article{ mohammadi2016review,
+ Title = {Review of numerical methods for simulation of the aortic
+ root: Present and future directions},
+ Author = {Mohammadi, Hossein and Cartier, Raymond and Mongrain,
+ Rosaire},
+ Journal = {International Journal for Computational Methods in
+ Engineering Science and Mechanics},
+ Volume = {17},
+ Number = {3},
+ Pages = {182--195},
+ Year = {2016},
+ Publisher = {Taylor \& Francis}
+}
+
+@Article{ moireau-chapelle-11,
+ Author = {Moireau, P. and Chapelle, D.},
+ Title = {Reduced-order {Unscented Kalman Filtering} with
+ application to parameter identification in
+ large-dimensional systems},
+ Journal = {COCV},
+ Pages = {380--405},
+ Volume = {17},
+ Note = {doi:10.1051/cocv/2010006},
+ Year = 2011
+}
+
+###Article{ moireau-chapelle-11,
+ Author = {Moireau, P. and Chapelle, D.},
+ Title = {Reduced-order {Unscented Kalman Filtering} with
+ application to parameter identification in
+ large-dimensional systems},
+ Journal = {COCV},
+ Pages = {380--405},
+ Volume = {17},
+ Note = {doi:10.1051/cocv/2010006},
+ Year = 2011
+}
+
+@Article{ moireau-chapelle-11b,
+ Author = {Moireau, P. and Chapelle, D.},
+ Title = {Erratum of article ``Reduced-order {Unscented Kalman
+ Filtering} with application to parameter identification in
+ large-dimensional systems''},
+ Journal = {COCV},
+ Pages = {406--409},
+ Volume = {17},
+ Note = {doi:10.1051/cocv/2011001},
+ Year = 2011
+}
+
+###Article{ moireau-chapelle-11b,
+ Author = {Moireau, P. and Chapelle, D.},
+ Title = {Erratum of article ``Reduced-order {Unscented Kalman
+ Filtering} with application to parameter identification in
+ large-dimensional systems''},
+ Journal = {COCV},
+ Pages = {406--409},
+ Volume = {17},
+ Note = {doi:10.1051/cocv/2011001},
+ Year = 2011
+}
+
+@Article{ moireau-chapelle-letallec-08,
+ Author = {Moireau, P. and Chapelle, D. and Le Tallec, P.},
+ Journal = {Computer Methods in Applied Mechanics and Engineering},
+ Pages = {659--677},
+ Title = {Joint state and parameter estimation for distributed
+ mechanical systems},
+ Volume = 197,
+ Year = 2008
+}
+
+###Article{ moireau-chapelle-letallec-08,
+ Author = {Moireau, P. and Chapelle, D. and Le Tallec, P.},
+ Journal = {Computer Methods in Applied Mechanics and Engineering},
+ Pages = {659--677},
+ Title = {Joint state and parameter estimation for distributed
+ mechanical systems},
+ Volume = 197,
+ Year = 2008
+}
+
+@Article{ moireau-chapelle-letallec-09,
+ Author = {Moireau, P. and Chapelle, D. and Le Tallec, P.},
+ date-added = {2009-03-10 11:37:28 -0700},
+ date-modified = {2009-03-10 11:37:56 -0700},
+ DOI = {10.1088/0266-5611/25/3/035010},
+ Journal = {Inverse Problems},
+ Month = {March},
+ Number = {3},
+ Pages = {035010--035035},
+ Title = {Filtering for distributed mechanical systems using
+ position measurements: {P}erspective in medical imaging},
+ Volume = {25},
+ Year = {2009}
+}
+
+###Article{ moireau-chapelle-letallec-09,
+ Author = {Moireau, P. and Chapelle, D. and Le Tallec, P.},
+ date-added = {2009-03-10 11:37:28 -0700},
+ date-modified = {2009-03-10 11:37:56 -0700},
+ DOI = {10.1088/0266-5611/25/3/035010},
+ Journal = {Inverse Problems},
+ Month = {March},
+ Number = {3},
+ Pages = {035010--035035},
+ Title = {Filtering for distributed mechanical systems using
+ position measurements: {P}erspective in medical imaging},
+ Volume = {25},
+ Year = {2009},
+ bdsk-url-1 = {http://dx.doi.org/10.1088/0266-5611/25/3/035010}
+}
+
+@Article{ moireau-etal-externaltissueestimation-11,
+ Year = {2012},
+ ISSN = {1617-7959},
+ Journal = {Biomechanics and Modeling in Mechanobiology},
+ DOI = {10.1007/s10237-012-0418-3},
+ Title = {Sequential identification of boundary support parameters
+ in a fluid-structure vascular model using patient image
+ data},
+ Publisher = {Springer-Verlag},
+ Keywords = {Nonlinear fluid-structure interaction; Patient-specific
+ hemodynamics; Image-based data assimilation; Parameter
+ identification; Support boundary conditions},
+ Author = {Moireau, P. and Bertoglio, C. and Xiao, N. and Figueroa,
+ C.A. and Taylor, C.A. and Chapelle, D. and Gerbeau, J.-F.},
+ Pages = {1-22}
+}
+
+###Article{ moireau-etal-externaltissueestimation-11,
+ Year = {2012},
+ ISSN = {1617-7959},
+ Journal = {Biomechanics and Modeling in Mechanobiology},
+ DOI = {10.1007/s10237-012-0418-3},
+ Title = {Sequential identification of boundary support parameters
+ in a fluid-structure vascular model using patient image
+ data},
+ Publisher = {Springer-Verlag},
+ Keywords = {Nonlinear fluid-structure interaction; Patient-specific
+ hemodynamics; Image-based data assimilation; Parameter
+ identification; Support boundary conditions},
+ Author = {Moireau, P. and Bertoglio, C. and Xiao, N. and Figueroa,
+ C.A. and Taylor, C.A. and Chapelle, D. and Gerbeau, J.-F.},
+ Pages = {1-22}
+}
+
+@Article{ moireau-etal-ident_extiss-12,
+ Author = {Moireau, P. and Bertoglio, C. and Xiao, N. and Figueroa,
+ C. and Taylor, C. and Chapelle, D. and Gerbeau, JF.},
+ date-modified = {2012-05-01 13:06:48 +0000},
+ Journal = {Biomechanics and Modeling in Mechanobiology},
+ Title = {Sequential identification of boundary support parameters
+ in a fluid-structure vascular model using patient image
+ data},
+ Year = {2013},
+ Publisher = {Springer Berlin / Heidelberg},
+ ISSN = {1617-7959},
+ Volume = {12},
+ DOI = {10.1007/s10237-012-0418-3},
+ Pages = {475-496}
+}
+
+@Article{ moireau-xiao-gerbeau-11,
+ Author = {Moireau, P. and Xiao, N. and Astorino, M. and Figueroa,
+ C.A. and Chapelle, D. and Taylor, C.A. and Gerbeau, J-F.},
+ Title = {External tissue support and fluid-structure simulation in
+ blood flows},
+ Journal = {Biomechanics and Modeling in Mechanobiology},
+ Year = {2011},
+ Note = {doi: 10.1007/s10237-011-0289-z}
+}
+
+###Article{ moireau-xiao-gerbeau-11,
+ Author = {Moireau, P. and Xiao, N. and Astorino, M. and Figueroa,
+ C.A. and Chapelle, D. and Taylor, C.A. and Gerbeau, J-F.},
+ Title = {External tissue support and fluid-structure simulation in
+ blood flows},
+ Journal = {Biomechanics and Modeling in Mechanobiology},
+ Year = {2011},
+ Note = {doi: 10.1007/s10237-011-0289-z}
+}
+
+@PhdThesis{ moireau08,
+ Author = {Moireau, P.},
+ School = {Ecole Polytechnique},
+ Title = {Filtering based data assimilation for second order
+ hyperbolic PDE. Applications in cardiac mechanics},
+ Year = {2008}
+}
+
+###PhdThesis{ moireau08,
+ Author = {Moireau, P.},
+ School = {Ecole Polytechnique},
+ Title = {Filtering based data assimilation for second order
+ hyperbolic PDE. Applications in cardiac mechanics},
+ Year = {2008}
+}
+
+@PhdThesis{ moireau2008phd,
+ Title = {Filtering based data assimilation for second order
+ hyperbolic PDE. Applications in cardiac mechanics},
+ Author = {Moireau, Philippe},
+ Year = {2008},
+ School = {PhD thesis, Ecole Polytechnique}
+}
+
+@Article{ moireau2009position,
+ Title = {Filtering for distributed mechanical systems using
+ position measurements: perspectives in medical imaging},
+ Author = {Moireau, Philippe and Chapelle, Dominique and Le Tallec,
+ Patrick},
+ Journal = {Inverse problems},
+ Volume = {25},
+ Number = {3},
+ Pages = {035010},
+ Year = {2009},
+ Publisher = {IOP Publishing}
+}
+
+@Article{ moireau2011cocv,
+ Title = {Reduced-order Unscented Kalman Filtering with application
+ to parameter identification in large-dimensional systems},
+ Author = {Moireau, Philippe and Chapelle, Dominique},
+ Journal = {ESAIM: Control, Optimisation and Calculus of Variations},
+ Volume = {17},
+ Number = {02},
+ Pages = {380--405},
+ Year = {2011},
+ Publisher = {Cambridge Univ Press}
+}
+
+@Article{ moireau2012bmmb,
+ Title = {Sequential identification of boundary support parameters
+ in a fluid-structure vascular model using patient image
+ data},
+ Author = {Moireau, P. and Bertoglio, C. and Xiao, N. and Figueroa,
+ C.A. and Taylor, C.A. and Chapelle, D. and Gerbeau, J.-F.},
+ Journal = {Biomechanics and Modeling in Mechanobiology},
+ Year = {2012},
+ Pages = {1-22},
+ DOI = {10.1007/s10237-012-0418-3},
+ ISSN = {1617-7959},
+ Keywords = {Nonlinear fluid-structure interaction; Patient-specific
+ hemodynamics; Image-based data assimilation; Parameter
+ identification; Support boundary conditions; FSI},
+ Publisher = {Springer-Verlag}
+}
+
+@Article{ moireau2013exttissueestim,
+ Author = "Moireau, P. and Bertoglio, C. and Xiao, N. and Figueroa,
+ C. A. and Taylor, C. A. and Chapelle, D. and Gerbeau,
+ J.-F.",
+ Title = "Sequential identification of boundary support parameters
+ in a fluid-structure vascular model using patient image
+ data",
+ Journal = "Biomechanics and Modeling in Mechanobiology",
+ Year = "2013",
+ Volume = "12",
+ Number = "3",
+ Pages = "475--496",
+ Abstract = "Viscoelastic support has been previously established as a
+ valuable modeling ingredient to represent the effect of
+ surrounding tissues and organs in a fluid-structure
+ vascular model. In this paper, we propose a complete
+ methodological chain for the identification of the
+ corresponding boundary support parameters, using patient
+ image data. We consider distance maps of model to image
+ contours as the discrepancy driving the data assimilation
+ approach, which then relies on a combination of (1) state
+ estimation based on the so-called SDF filtering method,
+ designed within the realm of Luenberger observers and well
+ adapted to handling measurements provided by image
+ sequences, and (2) parameter estimation based on a
+ reduced-order UKF filtering method which has no need for
+ tangent operator computations and features natural
+ parallelism to a high degree. Implementation issues are
+ discussed, and we show that the resulting computational
+ effectiveness of the complete estimation chain is
+ comparable to that of a direct simulation. Furthermore, we
+ demonstrate the use of this framework in a realistic
+ application case involving hemodynamics in the thoracic
+ aorta. The estimation of the boundary support parameters
+ proves successful, in particular in that direct modeling
+ simulations based on the estimated parameters are more
+ accurate than with a previous manual expert calibration.
+ This paves the way for complete patient-specific
+ fluid-structure vascular modeling in which all types of
+ available measurements could be used to estimate additional
+ uncertain parameters of biophysical and clinical
+ relevance.",
+ ISSN = "1617-7940",
+ DOI = "10.1007/s10237-012-0418-3",
+ URL = "http://dx.doi.org/10.1007/s10237-012-0418-3"
+}
+
+@Article{ moireau_external_2012,
+ langid = {english},
+ Title = {External Tissue Support and FluidâStructure Simulation
+ in Blood Flows},
+ Volume = {11},
+ ISSN = {1617-7959, 1617-7940},
+ URL = {http://link.springer.com/10.1007/s10237-011-0289-z},
+ DOI = {10.1007/s10237-011-0289-z},
+ Number = {1-2},
+ JournalTitle = {Biomechanics and Modeling in Mechanobiology},
+ URLDate = {2018-09-19},
+ Date = {2012-01},
+ Pages = {1-18},
+ Author = {Moireau, P. and Xiao, N. and Astorino, M. and Figueroa, C.
+ A. and Chapelle, D. and Taylor, C. A. and Gerbeau, J.-F.}
+}
+
+@Article{ moireau_joint_2008,
+ Title = {Joint State and Parameter Estimation for Distributed
+ Mechanical Systems},
+ Volume = {197},
+ URL = {http://www.sciencedirect.com/science/article/pii/S0045782507003660},
+ Number = {6},
+ JournalTitle = {Computer methods in applied mechanics and engineering},
+ URLDate = {2016-08-31},
+ Year = {2008},
+ Pages = {659--677},
+ Author = {Moireau, Philippe and Chapelle, Dominique and Le Tallec,
+ Patrick}
+}
+
+@Article{ moireau_reduced-order_2011,
+ Title = {Reduced-Order {{Unscented Kalman Filtering}} with
+ Application to Parameter Identification in
+ Large-Dimensional Systems},
+ Volume = {17},
+ URL = {http://www.esaim-cocv.org/articles/cocv/abs/2011/02/cocv0918/cocv0918.html},
+ Number = {2},
+ JournalTitle = {ESAIM: Control, Optimisation and Calculus of Variations},
+ URLDate = {2016-08-29},
+ Date = {2011},
+ Pages = {380--405},
+ Author = {Moireau, Philippe and Chapelle, Dominique}
+}
+
+@Article{ moireau_sequential_2013,
+ langid = {english},
+ Title = {Sequential Identification of Boundary Support Parameters
+ in a Fluid-Structure Vascular Model Using Patient Image
+ Data},
+ Volume = {12},
+ ISSN = {1617-7959, 1617-7940},
+ URL = {http://link.springer.com/10.1007/s10237-012-0418-3},
+ DOI = {10.1007/s10237-012-0418-3},
+ Number = {3},
+ JournalTitle = {Biomechanics and Modeling in Mechanobiology},
+ URLDate = {2019-02-27},
+ Year = {2013-06},
+ Pages = {475-496},
+ Author = {Moireau, P. and Bertoglio, C. and Xiao, N. and Figueroa,
+ C. A. and Taylor, C. A. and Chapelle, D. and Gerbeau,
+ J.-F.}
+}
+
+@PhdThesis{ moireauhdr,
+ Title = {{Observers for data assimilation - Applications to cardiac
+ modeling}},
+ Author = {Moireau, Philippe},
+ URL = {https://tel.archives-ouvertes.fr/tel-01404866},
+ School = {{Universit{\'e} Paris Saclay ; Universit{\'e} Paris Sud -
+ Paris XI}},
+ Year = {2016},
+ Month = nov,
+ Keywords = {inverse problems ; control ; observers ; PDE ; cardiac
+ mechanics ; probl{\`e}mes inverses ; estimation ;
+ identification ; data assimilation ; control observateurs ;
+ EDP ; m{\'e}canique cardiaque},
+ Type = {Habilitation {\`a} diriger des recherches},
+ PDF = {https://tel.archives-ouvertes.fr/tel-01404866/file/habilMoireau.pdf},
+ hal_id = {tel-01404866},
+ hal_version = {v1}
+}
+
+@InProceedings{ mok-wall-01,
+ Address = {Barcelona},
+ Author = {Mok, D. P. and Wall, W. A. },
+ BookTitle = {Trends in computational structural mechanics},
+ code = {fsi3},
+ Editor = {W.A. Wall, K.U. Bletzinger, K. Schweizerhof},
+ Publisher = {CIMNE},
+ Title = {Partitioned analysis schemes for the transient interaction
+ of incompressible flows and nonlinear flexible structures},
+ Year = {2001}
+}
+
+###InProceedings{ mok-wall-01,
+ Address = {Barcelona},
+ Author = {Mok, D. P. and Wall, W. A. },
+ BookTitle = {Trends in computational structural mechanics},
+ code = {fsi3},
+ Editor = {W.A. Wall, K.U. Bletzinger, K. Schweizerhof},
+ Publisher = {CIMNE},
+ Title = {Partitioned analysis schemes for the transient interaction
+ of incompressible flows and nonlinear flexible structures},
+ Year = {2001}
+}
+
+@InProceedings{ mok-wall-ramm-01,
+ Author = {Mok, D. P. and Wall, W. A. and Ramm, E. },
+ BookTitle = {Computational Fluid and Solid Mechanics},
+ code = {fsi4},
+ Editor = {K.J. Bathe},
+ Pages = {1325-1328},
+ Publisher = {Elsevier},
+ Title = {Accelerated iterative substructuring schemes for
+ instationary fluid-structure interaction},
+ Year = {2001}
+}
+
+###InProceedings{ mok-wall-ramm-01,
+ Author = {Mok, D. P. and Wall, W. A. and Ramm, E. },
+ BookTitle = {Computational Fluid and Solid Mechanics},
+ code = {fsi4},
+ Editor = {K.J. Bathe},
+ Pages = {1325-1328},
+ Publisher = {Elsevier},
+ Title = {Accelerated iterative substructuring schemes for
+ instationary fluid-structure interaction},
+ Year = {2001}
+}
+
+@Article{ montalba_variability_2018,
+ Title = {Variability of {{4D}} Flow Parameters When Subjected to
+ Changes in {{MRI}} Acquisition Parameters Using a Realistic
+ Thoracic Aortic Phantom},
+ Author = {Montalba, Cristian and Urbina, Jesus and Sotelo, Julio and
+ Andia, Marcelo E. and Tejos, Cristian and Irarrazaval,
+ Pablo and Hurtado, Daniel E. and Valverde, Israel and
+ Uribe, Sergio},
+ Year = {2018},
+ Volume = {79},
+ Pages = {1882--1892},
+ Journal = {Magnetic resonance in medicine},
+ Number = {4}
+}
+
+@Article{ moore_accuracy_1999,
+ langid = {english},
+ Title = {Accuracy of {{Computational Hemodynamics}} in {{Complex
+ Arterial Geometries Reconstructed}} from {{Magnetic
+ Resonance Imaging}}},
+ Volume = {27},
+ ISSN = {1573-9686},
+ URL = {https://doi.org/10.1114/1.163},
+ DOI = {10.1114/1.163},
+ Abstract = {Purpose: Combining computational blood flow modeling with
+ three-dimensional medical imaging provides a new approach
+ for studying links between hemodynamic factors and arterial
+ disease. Although this provides patient-specific
+ hemodynamic information, it is subject to several potential
+ errors. This study quantifies some of these errors and
+ identifies optimal reconstruction methodologies. Methods: A
+ carotid artery bifurcation phantom of known geometry was
+ imaged using a commercial magnetic resonance (MR) imager.
+ Three-dimensional models were reconstructed from the images
+ using several reconstruction techniques, and steady and
+ unsteady blood flow simulations were performed. The carotid
+ bifurcation from a healthy, human volunteer was then imaged
+ in vivo, and geometric models were reconstructed. Results:
+ Reconstructed models of the phantom showed good agreement
+ with the gold standard geometry, with a mean error of
+ approximately 15\% between the computed wall shear stress
+ fields. Reconstructed models of the in vivo carotid
+ bifurcation were unacceptably noisy, unless lumenal profile
+ smoothing and approximating surface splines were used.
+ Conclusions: All reconstruction methods gave acceptable
+ results for the phantom model, but in vivo models appear to
+ require smoothing. If proper attention is paid to smoothing
+ and geometric fidelity issues, models reconstructed from MR
+ images appear to be suitable for use in computational
+ studies of in vivo hemodynamics. © 1999 Biomedical
+ Engineering Society.PAC99: 8719Uv, 8761-c, 0705Pj, 8710+e},
+ Number = {1},
+ JournalTitle = {Annals of Biomedical Engineering},
+ ShortJournal = {Annals of Biomedical Engineering},
+ URLDate = {2019-02-25},
+ Date = {1999-01-01},
+ Pages = {32-41},
+ Author = {Moore, J. A. and Steinman, D. A. and Holdsworth, D. W. and
+ Ethier, C. R.}
+}
+
+###Article{ moore_accuracy_1999,
+ langid = {english},
+ Title = {Accuracy of {{Computational Hemodynamics}} in {{Complex
+ Arterial Geometries Reconstructed}} from {{Magnetic
+ Resonance Imaging}}},
+ Volume = {27},
+ ISSN = {1573-9686},
+ URL = {https://doi.org/10.1114/1.163},
+ DOI = {10.1114/1.163},
+ Abstract = {Purpose: Combining computational blood flow modeling with
+ three-dimensional medical imaging provides a new approach
+ for studying links between hemodynamic factors and arterial
+ disease. Although this provides patient-specific
+ hemodynamic information, it is subject to several potential
+ errors. This study quantifies some of these errors and
+ identifies optimal reconstruction methodologies. Methods: A
+ carotid artery bifurcation phantom of known geometry was
+ imaged using a commercial magnetic resonance (MR) imager.
+ Three-dimensional models were reconstructed from the images
+ using several reconstruction techniques, and steady and
+ unsteady blood flow simulations were performed. The carotid
+ bifurcation from a healthy, human volunteer was then imaged
+ in vivo, and geometric models were reconstructed. Results:
+ Reconstructed models of the phantom showed good agreement
+ with the gold standard geometry, with a mean error of
+ approximately 15\% between the computed wall shear stress
+ fields. Reconstructed models of the in vivo carotid
+ bifurcation were unacceptably noisy, unless lumenal profile
+ smoothing and approximating surface splines were used.
+ Conclusions: All reconstruction methods gave acceptable
+ results for the phantom model, but in vivo models appear to
+ require smoothing. If proper attention is paid to smoothing
+ and geometric fidelity issues, models reconstructed from MR
+ images appear to be suitable for use in computational
+ studies of in vivo hemodynamics. © 1999 Biomedical
+ Engineering Society.PAC99: 8719Uv, 8761-c, 0705Pj, 8710+e},
+ Number = {1},
+ JournalTitle = {Annals of Biomedical Engineering},
+ ShortJournal = {Annals of Biomedical Engineering},
+ URLDate = {2019-02-25},
+ Year = {1999-01-01},
+ Pages = {32-41},
+ Author = {Moore, J. A. and Steinman, D. A. and Holdsworth, D. W. and
+ Ethier, C. R.}
+}
+
+@Article{ moore_computational_1997,
+ Title = {Computational Blood Flow Modelling: Errors Associated with
+ Reconstructing Finite Element Models from Magnetic
+ Resonance Images},
+ Volume = {31},
+ ShortTitle = {Computational Blood Flow Modelling},
+ Number = {2},
+ JournalTitle = {Journal of Biomechanics},
+ Date = {1997},
+ Pages = {179--184},
+ Author = {Moore, Jennifer A. and Steinman, David A. and Ethier, C.
+ Ross}
+}
+
+###Article{ moore_computational_1997,
+ Title = {Computational Blood Flow Modelling: Errors Associated with
+ Reconstructing Finite Element Models from Magnetic
+ Resonance Images},
+ Volume = {31},
+ ShortTitle = {Computational Blood Flow Modelling},
+ Number = {2},
+ JournalTitle = {Journal of Biomechanics},
+ Year = {1997},
+ Pages = {179--184},
+ Author = {Moore, Jennifer A. and Steinman, David A. and Ethier, C.
+ Ross}
+}
+
+@Article{ moran_flow_1982,
+ Title = {A Flow Velocity Zeugmatographic Interlace for {{NMR}}
+ Imaging in Humans},
+ Author = {Moran, Paul R.},
+ Year = {1982},
+ Volume = {1},
+ Pages = {197--203},
+ Journal = {Magnetic resonance imaging},
+ Number = {4}
+}
+
+@Book{ morand-ohayon-92,
+ Address = {Paris},
+ Author = {Morand, H. and Ohayon, R.},
+ Publisher = {Masson},
+ Series = {Recherches en Math{\'e}matiques Appliqu{\'e}es},
+ Title = {Interactions fluides-structures},
+ Volume = {23},
+ Year = {1992}
+}
+
+###Book{ morand-ohayon-92,
+ Address = {Paris},
+ Author = {Morand, H. and Ohayon, R.},
+ Publisher = {Masson},
+ Series = {Recherches en Math{\'e}matiques Appliqu{\'e}es},
+ Title = {Interactions fluides-structures},
+ Volume = {23},
+ Year = {1992}
+}
+
+@Book{ morand-ohayon-95,
+ Author = {Morand, H. and Ohayon, R.},
+ Publisher = {John Wiley \& Sons},
+ Title = {Fluid-Structure Interaction: Applied Numerical Methods},
+ Year = {1995}
+}
+
+###Book{ morand-ohayon-95,
+ Author = {Morand, H. and Ohayon, R.},
+ Publisher = {John Wiley \& Sons},
+ Title = {Fluid-Structure Interaction: Applied Numerical Methods},
+ Year = {1995}
+}
+
+@Article{ morbiducci_inflow_2013,
+ Title = {Inflow Boundary Conditions for Image-Based Computational
+ Hemodynamics: Impact of Idealized versus Measured Velocity
+ Profiles in the Human Aorta},
+ Volume = {46},
+ ShortTitle = {Inflow Boundary Conditions for Image-Based Computational
+ Hemodynamics},
+ Number = {1},
+ JournalTitle = {Journal of biomechanics},
+ Year = {2013},
+ Pages = {102--109},
+ Author = {Morbiducci, Umberto and Ponzini, Raffaele and Gallo, Diego
+ and Bignardi, Cristina and Rizzo, Giovanna}
+}
+
+@Article{ morbiducci_outflow_2010,
+ Title = {Outflow {{Conditions}} for {{Image}}-{{Based Hemodynamic
+ Models}} of the {{Carotid Bifurcation}}: {{Implications}}
+ for {{Indicators}} of {{Abnormal Flow}}},
+ Volume = {132},
+ ISSN = {0148-0731},
+ URL = {http://dx.doi.org/10.1115/1.4001886},
+ DOI = {10.1115/1.4001886},
+ ShortTitle = {Outflow {{Conditions}} for {{Image}}-{{Based Hemodynamic
+ Models}} of the {{Carotid Bifurcation}}},
+ Abstract = {Computational fluid dynamics (CFD) models have become very
+ effective tools for predicting the flow field within the
+ carotid bifurcation, and for understanding the relationship
+ between local hemodynamics, and the initiation and
+ progression of vascular wall pathologies. As prescribing
+ proper boundary conditions can affect the solutions of the
+ equations governing blood flow, in this study, we
+ investigated the influence to assumptions regarding the
+ outflow boundary conditions in an image-based CFD model of
+ human carotid bifurcation. Four simulations were conducted
+ with identical geometry, inlet flow rate, and fluid
+ parameters. In the first case, a physiological time-varying
+ flow rate partition at branches along the cardiac cycle was
+ obtained by coupling the 3D model of the carotid
+ bifurcation at outlets with a lumped-parameter model of the
+ downstream vascular network. Results from the coupled model
+ were compared with those obtained by imposing three fixed
+ flow rate divisions (50/50, 60/40, and 70/30) between the
+ two branches of the isolated 3D model of the carotid
+ bifurcation. Three hemodynamic wall parameters were
+ considered as indicators of vascular wall dysfunction. Our
+ findings underscore that the overall effect of the
+ assumptions done in order to simulate blood flow within the
+ carotid bifurcation is mainly in the hot-spot modulation of
+ the hemodynamic descriptors of atherosusceptible areas,
+ rather than in their distribution. In particular, the more
+ physiological, time-varying flow rate division deriving
+ from the coupled simulation has the effect of damping wall
+ shear stress (WSS) oscillations (differences among the
+ coupled and the three fixed flow partition models are up to
+ 37.3\% for the oscillating shear index). In conclusion, we
+ recommend to adopt more realistic constraints, for example,
+ by coupling models at different scales, as in this study,
+ when the objective is the outcome prediction of alternate
+ therapeutic interventions for individual patients, or to
+ test hypotheses related to the role of local fluid dynamics
+ and other biomechanical factors in vascular diseases.},
+ Number = {9},
+ JournalTitle = {Journal of Biomechanical Engineering},
+ ShortJournal = {J Biomech Eng},
+ URLDate = {2019-03-09},
+ Year = {2010-08-17},
+ Pages = {091005-091005-11},
+ Author = {Morbiducci, Umberto and Gallo, Diego and Massai, Diana and
+ Consolo, Filippo and Ponzini, Raffaele and Antiga, Luca and
+ Bignardi, Cristina and Deriu, Marco A. and Redaelli,
+ Alberto}
+}
+
+@Book{ moreau-90,
+ Annote = {mhd, duct flow},
+ Author = {Moreau, R.},
+ code = {mhd17},
+ Publisher = {Kluwer Academic Publishers},
+ Title = {Magnetohydrodynamics},
+ Year = {1990}
+}
+
+###Book{ moreau-90,
+ Annote = {mhd, duct flow},
+ Author = {Moreau, R.},
+ code = {mhd17},
+ Publisher = {Kluwer Academic Publishers},
+ Title = {Magnetohydrodynamics},
+ Year = {1990}
+}
+
+@InCollection{ moreau-92,
+ Author = {Moreau, R.},
+ BookTitle = {Trait{\'e} de G{\'e}nie {\'e}lectrique},
+ code = {mhd39},
+ Pages = {D2950-3 -- D2950-30},
+ Publisher = {Editions Techniques de l'ing{\'e}nieur},
+ Title = {Ecoulement d'un m{\'e}tal liquide en pr{\'e}sence d'un
+ champ magn{\'e}tique},
+ Volume = {D4},
+ Year = {1992}
+}
+
+###InCollection{ moreau-92,
+ Author = {Moreau, R.},
+ BookTitle = {Trait{\'e} de G{\'e}nie {\'e}lectrique},
+ code = {mhd39},
+ Pages = {D2950-3 -- D2950-30},
+ Publisher = {Editions Techniques de l'ing{\'e}nieur},
+ Title = {Ecoulement d'un m{\'e}tal liquide en pr{\'e}sence d'un
+ champ magn{\'e}tique},
+ Volume = {D4},
+ Year = {1992}
+}
+
+@Article{ moreau-evans-84,
+ Author = {Moreau, R. and Evans, J.W.},
+ Journal = {J. Electrochem. Soc.: Electrochem. Sci. Tech.},
+ Number = {10},
+ Pages = {2251-2259},
+ Title = {An analysis of the hydrodynamics of aluminium in reduction
+ cells},
+ Volume = {131},
+ Year = {1984}
+}
+
+###Article{ moreau-evans-84,
+ Author = {Moreau, R. and Evans, J.W.},
+ Journal = {J. Electrochem. Soc.: Electrochem. Sci. Tech.},
+ Number = {10},
+ Pages = {2251-2259},
+ Title = {An analysis of the hydrodynamics of aluminium in reduction
+ cells},
+ Volume = {131},
+ Year = {1984}
+}
+
+@Article{ moreau-ziegler-88,
+ Author = {Moreau, R. and Ziegler, D.},
+ Journal = {Metal. Trans. B.},
+ Pages = {737--744},
+ Title = {The Moreau-Evans hydrodynamic model applied to actual
+ Hall-H{\'e}roult cells},
+ Volume = {19B},
+ Year = {1988}
+}
+
+###Article{ moreau-ziegler-88,
+ Author = {Moreau, R. and Ziegler, D.},
+ Journal = {Metal. Trans. B.},
+ Pages = {737--744},
+ Title = {The Moreau-Evans hydrodynamic model applied to actual
+ Hall-H{\'e}roult cells},
+ Volume = {19B},
+ Year = {1988}
+}
+
+@Article{ morganti2013aorticrootfrom2d,
+ Title = {Aortic root 3D parametric morphological model from 2D-echo
+ images},
+ Author = {Morganti, S. and Valentini, A. and Favalli, V. and Serio,
+ A. and Gambarin, F. and Vella, D. and Mazzocchi, L. and
+ Massetti, M. and Auricchio, F. and Arbustini, E.},
+ Journal = {Computers in biology and medicine},
+ Volume = {43},
+ Number = {12},
+ Pages = {2196--2204},
+ Year = {2013},
+ Publisher = {Elsevier}
+}
+
+@Article{ mortchelewicz_flutter_2000,
+ langid = {english},
+ Title = {Flutter Simulations},
+ Volume = {4},
+ ISSN = {12709638},
+ URL = {https://linkinghub.elsevier.com/retrieve/pii/S1270963800001164},
+ DOI = {10.1016/S1270-9638(00)00116-4},
+ Number = {1},
+ JournalTitle = {Aerospace Science and Technology},
+ URLDate = {2019-08-24},
+ Date = {2000-01},
+ Pages = {33-40},
+ Author = {Mortchéléwicz, Guy Daniel}
+}
+
+@PhdThesis{ mouro-96,
+ Author = {Mouro, J.},
+ School = {Ecole Polytechnique, France},
+ Title = {Interactions fluide structure en grands d{\'e}placements.
+ R{\'e}solution num{\'e}rique et application aux composants
+ hydrauliques automobiles},
+ Year = {1996}
+}
+
+###PhdThesis{ mouro-96,
+ Author = {Mouro, J.},
+ School = {Ecole Polytechnique, France},
+ Title = {Interactions fluide structure en grands d{\'e}placements.
+ R{\'e}solution num{\'e}rique et application aux composants
+ hydrauliques automobiles},
+ Year = {1996}
+}
+
+@Book{ mpi,
+ Author = {Gropp, W. and Huss-Lederman, S. and Lumsdaine, A. and
+ Lusk, E. and Nitzberg, B. and Saphir, W. and Snir, M.},
+ Edition = {Second},
+ Publisher = {The MIT Press},
+ Title = {MPI: The Complete Reference (Vol. 2), Vol. 2 - The MPI-2
+ Extensions},
+ Year = {1998}
+}
+
+###Book{ mpi,
+ Author = {Gropp, W. and Huss-Lederman, S. and Lumsdaine, A. and
+ Lusk, E. and Nitzberg, B. and Saphir, W. and Snir, M.},
+ Edition = {Second},
+ Publisher = {The MIT Press},
+ Title = {MPI: The Complete Reference (Vol. 2), Vol. 2 - The MPI-2
+ Extensions},
+ Year = {1998}
+}
+
+@Article{ muhler_evaluation_1993,
+ Title = {Evaluation of Aortic Coarctation after Surgical Repair:
+ Role of Magnetic Resonance Imaging and {{Doppler}}
+ Ultrasound.},
+ Volume = {70},
+ ShortTitle = {Evaluation of Aortic Coarctation after Surgical Repair},
+ Number = {3},
+ JournalTitle = {Heart},
+ Year = {1993},
+ Pages = {285--290},
+ Author = {Mühler, E. G. and Neuerburg, Jorg M. and Rüben, A. and
+ Grabitz, Ralf G. and Günther, R. W. and Messmer, Bruno J.
+ and von Bernuth, Gotz},
+ Options = {useprefix=true}
+}
+
+@Article{ muller_reduced-order_2018,
+ Title = {Reduced-{{Order Unscented Kalman Filter}} with
+ Observations in the {{Frequency Domain}}: {{Application}}
+ to {{Computational Hemodynamics}}},
+ ShortTitle = {Reduced-{{Order Unscented Kalman Filter}} with
+ Observations in the {{Frequency Domain}}},
+ JournalTitle = {IEEE Transactions on Biomedical Engineering},
+ Year = {2018},
+ Author = {M\"uller, Lucas O. and Caiazzo, Alfonso and Blanco, Pablo
+ J.}
+}
+
+@InProceedings{ munoz2010analysis,
+ Title = {Analysis of the helix and transverse angles of the muscle
+ fibers in the myocardium based on diffusion tensor
+ imaging},
+ Author = {Mu\~noz, Emma and C{\'a}rdenes, Rub{\'e}n and Frangi,
+ Alejandro F},
+ BookTitle = {Engineering in Medicine and Biology Society (EMBC), 2010
+ Annual International Conference of the IEEE},
+ Pages = {5720--5723},
+ Year = {2010},
+ Organization = {IEEE}
+}
+
+@Article{ murata-secomb-88,
+ Annote = {red blood cell},
+ Author = {Murata, T. and Secomb, T.W.},
+ code = {cel19},
+ Journal = {Biorheology},
+ Pages = {113--122},
+ Title = {Effects of shear rate on rouleau formation in simple shear
+ flow},
+ Volume = {25},
+ Year = {1988}
+}
+
+###Article{ murata-secomb-88,
+ Annote = {red blood cell},
+ Author = {Murata, T. and Secomb, T.W.},
+ code = {cel19},
+ Journal = {Biorheology},
+ Pages = {113--122},
+ Title = {Effects of shear rate on rouleau formation in simple shear
+ flow},
+ Volume = {25},
+ Year = {1988}
+}
+
+@Book{ murphy2012machine,
+ Title = {Machine learning: a probabilistic perspective},
+ Author = {Murphy, Kevin P},
+ Year = {2012},
+ Publisher = {MIT press}
+}
+
+@Article{ nacif2012jcmr,
+ Title = {Gadolinium-enhanced cardiovascular magnetic resonance:
+ administered dose in relationship to united states food and
+ drug administration (FDA) guidelines},
+ Author = {Nacif, Marcelo S. and Arai, Andrew E. and Lima, Joao A.C.
+ and Bluemke, David A.},
+ Journal = {Journal of Cardiovascular Magnetic Resonance},
+ Year = {2012},
+ Number = {18},
+ Volume = {14},
+ File = {:Nacif2012JCMR.pdf:PDF},
+ Keywords = {Contrast media, Gadolinium, Heart, Magnetic resonance
+ imaging},
+ review = {Nacif et al. Journal of Cardiovascular Magnetic Resonance
+ 2012, 14:18 http://www.jcmr-online.com/content/14/1/18
+
+ RESEARCH Open Access
+
+ Gadolinium-enhanced cardiovascular magnetic resonance:
+ administered dose in relationship to united states food and
+ drug administration (FDA) guidelines Marcelo S Nacif1,2,3,
+ Andrew E Arai4, Joao AC Lima2 and David A Bluemke1,5*
+
+ Abstract
+
+ Purpose: Myocardial late gadolinium enhancement was
+ originally validated using higher than label-recommended
+ doses of gadolinium chelate. The objective of this study
+ was to evaluate available evidence for various gadolinium
+ dosing regimens used for CMR. The relationship of
+ gadolinium dose warnings (due to nephrogenic systemic
+ fibrosis) announced in 2008 to gadolinium dosing regimens
+ was also examined.
+
+ Methods: We conducted a meta-analysis of peer reviewed
+ publications from January, 2004 to December, 2010. Major
+ subject search headings (MeSh) terms from the National
+ Library of Medicine?s PubMed were: contrast media,
+ gadolinium, heart, magnetic resonance imaging; searches
+ were limited to human studies with abstracts published in
+ English. Case reports, review articles, editorials, MRA
+ related papers and all reports that did not indicate
+ gadolinium type or weight-based dose were excluded. For all
+ included references, full text was available to determine
+ the total administered gadolinium dose on a per kg basis.
+ Average and median dose values were weighted by the number
+ of subjects in each study.
+
+ Results: 399 publications were identified in PubMed; 233
+ studies matched the inclusion criteria, encompassing 19,934
+ patients with mean age 54.2 ± 11.4 (range 9.3 to 76
+ years). 34 trials were related to perfusion testing and 199
+ to myocardial late gadolinium enhancement. In 2004, the
+ weighted-median and weighted-mean contrast dose were 0.15
+ and 0.16 ± 0.06 mmol/kg, respectively. Median contrast
+ doses for 2005-2010 were: 0.2 mmol/kg for all years,
+ respectively. Mean contrast doses for the years 2005-2010
+ were: 0.19 ± 0.03, 0.18 ± 0.04, 0.18 ± 0.10, 0.18 ±
+ 0.03, 0.18 ± 0.04 and 0.18 ± 0.04 mmol/kg, respectively
+ (p for trend, NS). Gadopentetate dimeglumine was the most
+ frequent gadolinium type [114 (48.9%) studies]. No change
+ in mean gadolinium dose was present before, versus after
+ the Food and Drug Administration (FDA) black box warning (p
+ > 0.05). Three multi-center dose ranging trials have been
+ published for cardiac {MRI} applications.
+
+ Conclusion: CMR studies in the peer-reviewed published
+ literature routinely use higher gadolinium doses than
+ regulatory agencies indicated in the package leaflet.
+ Clinical trials should be supported to determine the
+ appropriate doses of gadolinium for CMR studies.
+
+ Keywords: Contrast media, Gadolinium, Heart, Magnetic
+ resonance imaging
+
+ * Correspondence: bluemked@nih.gov 1Radiology and Imaging
+ Sciences - National Institutes of Health Clinical Center,
+ Bethesda, MD, USA Full list of author information is
+ available at the end of the article
+
+ © 2012 Nacif et al; licensee BioMed Central Ltd. This is
+ an Open Access article distributed under the terms of the
+ Creative Commons Attribution License
+ (http://creativecommons.org/licenses/by/2.0), which permits
+ unrestricted use, distribution, and reproduction in any
+ medium, provided the original work is properly cited.},
+ URL = {http://www.jcmr-online.com/content/14/1/18}
+}
+
+@Article{ nagler-bertoglio-gee-wall-13,
+ Author = {Nagler, A. and Bertoglio, C. and Gee, M. and Wall, W.},
+ Title = {{Personalization of cardiac fiber orientations from image
+ data using the Unscented Kalman Filter}},
+ Year = {2013},
+ Pages = {132--140},
+ Journal = {LNCS 7945, 7th Int. Conference for Functional Imaging and
+ Modeling of the Heart}
+}
+
+@InBook{ nagler2013,
+ Author = "Nagler, Andreas and Bertoglio, Crist{\'o}bal and Gee,
+ Michael and Wall, Wolfgang",
+ Chapter = "Personalization of Cardiac Fiber Orientations from Image
+ Data Using the Unscented Kalman Filter",
+ Title = "Functional Imaging and Modeling of the Heart: 7th
+ International Conference, FIMH 2013, London, UK, June
+ 20-22, 2013. Proceedings",
+ Year = "2013",
+ Publisher = "Springer Berlin Heidelberg",
+ Address = "Berlin, Heidelberg",
+ Pages = "132--140",
+ ISBN = "978-3-642-38899-6",
+ DOI = "10.1007/978-3-642-38899-6_16",
+ URL = "http://dx.doi.org/10.1007/978-3-642-38899-6_16"
+}
+
+@Article{ nasiraei-moghaddam_factors_2004,
+ Title = {Factors Affecting the Accuracy of Pressure Measurements in
+ Vascular Stenoses from Phase-Contrast {{MRI}}},
+ Volume = {52},
+ Number = {2},
+ JournalTitle = {Magnetic Resonance in Medicine: An Official Journal of the
+ International Society for Magnetic Resonance in Medicine},
+ Year = {2004},
+ Pages = {300--309},
+ Author = {Nasiraei-Moghaddam, Abbas and Behrens, Geoffrey and
+ Fatouraee, Nasser and Agarwal, Ramesh and Choi, Eric T. and
+ Amini, Amir A.}
+}
+
+@InCollection{ natalini-99,
+ Author = {Natalini, R.},
+ BookTitle = {Analysis of systems of conservation laws},
+ Editor = {Chapman $\&$ Hall/CRC},
+ Pages = {128--198},
+ Publisher = { Boca Raton, FL},
+ Title = {Recent results on hyperbolic relaxation problems },
+ Year = {1999}
+}
+
+###InCollection{ natalini-99,
+ Author = {Natalini, R.},
+ BookTitle = {Analysis of systems of conservation laws},
+ Editor = {Chapman $\&$ Hall/CRC},
+ Pages = {128--198},
+ Publisher = { Boca Raton, FL},
+ Title = {Recent results on hyperbolic relaxation problems },
+ Year = {1999}
+}
+
+@Book{ netter-atlas-00,
+ Title = {{Atlas of Human Anatomy}},
+ Author = {Netter, F.H.},
+ Year = {2000},
+ Publisher = {Saunders},
+ Edition = {10th}
+}
+
+###Book{ netter-atlas-00,
+ Title = {{Atlas of Human Anatomy}},
+ Author = {Netter, F.H.},
+ Year = {2000},
+ Publisher = {Saunders},
+ Edition = {10th}
+}
+
+@Article{ nguyen-68,
+ Annote = {mhd, stability},
+ Author = {Nguyen, X.},
+ code = {mhd28},
+ Journal = {C.R. Acad. Sc. Paris},
+ Title = {Etude th{\'e}orique et exp{\'e}rimentale sur mod{\`e}le
+ hydraulique des instabilit{\'e}s de {Rayleigh-Taylor} en
+ magn{\'e}tohydrodynamique},
+ Volume = {266},
+ Year = {1968}
+}
+
+###Article{ nguyen-68,
+ Annote = {mhd, stability},
+ Author = {Nguyen, X.},
+ code = {mhd28},
+ Journal = {C.R. Acad. Sc. Paris},
+ Title = {Etude th{\'e}orique et exp{\'e}rimentale sur mod{\`e}le
+ hydraulique des instabilit{\'e}s de {Rayleigh-Taylor} en
+ magn{\'e}tohydrodynamique},
+ Volume = {266},
+ Year = {1968}
+}
+
+@Article{ nguyen2009adaptive,
+ Title = {Adaptive anisotropic meshing for steady
+ convection-dominated problems},
+ Author = {Nguyen, Hoa and Gunzburger, Max and Ju, Lili and Burkardt,
+ John},
+ Journal = {Computer Methods in Applied Mechanics and Engineering},
+ Volume = {198},
+ Number = {37},
+ Pages = {2964--2981},
+ Year = {2009},
+ Publisher = {Elsevier}
+}
+
+@Article{ nguyen2013,
+ Title = {{In vivo three-dimensional high resolution cardiac
+ diffusion-weighted MRI: A motion compensated
+ diffusion-prepared balanced steady-state free precession
+ approach}},
+ Author = {Nguyen, C. and Fan, Z. and Sharif, B. and He, Y. and
+ Dharmakumar, R. and Berman, D. S. and Li, D.},
+ Journal = {Magnetic Resonance in Medicine},
+ Volume = {72},
+ Number = {5},
+ Pages = {1257--1267},
+ Year = {2013},
+ Publisher = {Wiley Online Library}
+}
+
+@Article{ nguyen2014jcmr,
+ Title = {In vivo contrast free chronic myocardial infarction
+ characterization using diffusion-weighted cardiovascular
+ magnetic resonance.},
+ Author = {Nguyen, Christopher and Fan, Zhaoyang and Xie, Yibin and
+ Dawkins, James and Tseliou, Eleni and Bi, Xiaoming and
+ Sharif, Behzad and Dharmakumar, Rohan and Marb{\'{a}}n,
+ Eduardo and Li, Debiao},
+ Journal = {J Cardiovasc Magn Reson},
+ Year = {2014},
+ Pages = {68},
+ Volume = {16},
+ Abstract = {Despite the established role of late gadolinium
+ enhancement (LGE) cardiovascular magnetic resonance (CMR)
+ in characterizing chronic myocardial infarction (MI), a
+ significant portion of chronic MI patients are
+ contraindicative for the use of contrast agents. One
+ promising alternative contrast free technique is diffusion
+ weighted CMR (dwCMR), which has been shown ex vivo to be
+ sensitive to myocardial fibrosis. We used a recently
+ developed in vivo dwCMR in chronic MI pigs to compare
+ apparent diffusion coefficient (ADC) maps with LGE imaging
+ for infarct characterization.In eleven mini pigs, chronic
+ MI was induced by complete occlusion of the left anterior
+ descending artery for 150Â minutes. LGE, cine, and dwCMR
+ imaging was performed 8Â weeks post MI. ADC maps were
+ derived from three orthogonal diffusion directions
+ (b?=?400Â s/mm2) and one non-diffusion weighted image. Two
+ semi-automatic infarct classification methods, threshold
+ and full width half max (FWHM), were performed in both LGE
+ and ADC maps. Regional wall motion (RWM) analysis was
+ performed and compared to ADC maps to determine if any
+ observed ADC change was significantly influenced by bulk
+ motion.ADC of chronic MI territories was significantly
+ increased (threshold: 2.4?±?0.3 ?m2/ms, FWHM:
+ 2.4?±?0.2 ?m2/ms) compared to remote myocardium
+ (1.4?±?0.3 ?m2/ms). RWM was significantly reduced
+ (threshold: 1.0?±?0.4 mm, FWHM: 0.9?±?0.4 mm) in
+ infarcted regions delineated by ADC compared to remote
+ myocardium (8.3?±?0.1 mm). ADC-derived infarct volume and
+ location had excellent agreement with LGE. Both LGE and ADC
+ were in complete agreement when identifying transmural
+ infarcts. Additionally, ADC was able to detect
+ LGE-delineated infarcted segments with high sensitivity,
+ specificity, PPV, and NPV. (threshold: 0.88, 0.93, 0.87,
+ and 0.94, FWHM: 0.98, 0.97, 0.93, and 0.99,
+ respectively).In vivo diffusion weighted CMR has potential
+ as a contrast free alternative for LGE in characterizing
+ chronic MI.},
+ DOI = {10.1186/s12968-014-0068-y},
+ Language = {eng},
+ medline-pst = {epublish},
+ owner = {stoeckc},
+ pii = {s12968-014-0068-y},
+ pmid = {25230598},
+ timestamp = {2015.07.24},
+ URL = {http://dx.doi.org/10.1186/s12968-014-0068-y}
+}
+
+@Article{ nguyen2014mrm,
+ Title = {In vivo three-dimensional high resolution cardiac
+ diffusion-weighted MRI: a motion compensated
+ diffusion-prepared balanced steady-state free precession
+ approach.},
+ Author = {Nguyen, Christopher and Fan, Zhaoyang and Sharif, Behzad
+ and He, Yi and Dharmakumar, Rohan and Berman, Daniel S. and
+ Li, Debiao},
+ Journal = {Magn Reson Med},
+ Year = {2014},
+ Month = {Nov},
+ Number = {5},
+ Pages = {1257--1267},
+ Volume = {72},
+ Abstract = {The aim of this study was to implement and optimize a
+ novel application of diffusion-prepared balanced
+ steady-state free precession (bSSFP) to perform in vivo
+ cardiac diffusion-weighted MRI.Diffusion-prepared sequences
+ have the flexibility to diffusion encode with a multi-shot
+ image readout. The diffusion preparation was optimized to
+ reduce sensitivity to cardiac bulk motion with second order
+ motion compensation (M1M2). The image readout consisted of
+ a three-dimensional (3D) centric-encoded segmented bSSFP
+ acquisition that incorporated a prospective navigator. Ten
+ healthy subjects were scanned twice using the proposed
+ technique diffusion preparation with and without M1M2 using
+ three orthogonal directions under varying off-resonance
+ conditions. Trace apparent diffusion coefficient (trADC)
+ maps and the left ventricular (LV) trADC were
+ calculated.M1M2 diffusion-prepared scans resulted in LV
+ trADC values of 1.5 ± 0.4 à 10(-3) mm(2)/s that were
+ reproducible yielding no statistical differences (P =
+ 0.54). M1M2 diffusion-prepared images showed no ghosting
+ artifacts and/or signal fallout. The non-motion-compensated
+ diffusion-prepared scans yielded LV trADC values of 6.6 ±
+ 0.9 Ã 10(-3) mm(2)/s and diffusion-prepared images with
+ severe bulk motion-induced artifacts.We developed a novel
+ free-breathing bulk motion compensated diffusion-prepared
+ 3D segmented bSSFP technique able to perform in vivo
+ cardiac diffusion-weighted MRI on a conventional clinical
+ MR scanner.},
+ DOI = {10.1002/mrm.25038},
+ Institution = {Biomedical Imaging Research Institute, Cedars-Sinai
+ Medical Center, Los Angeles, California, USA; Department of
+ Bioengineering, University of California Los Angeles, Los
+ Angeles, California, USA.},
+ Language = {eng},
+ medline-pst = {ppublish},
+ owner = {stoeckc},
+ pmid = {24259113},
+ timestamp = {2015.07.24},
+ URL = {http://dx.doi.org/10.1002/mrm.25038}
+}
+
+@Book{ nichols-orourke-05,
+ Title = {McDonald's blood flow in arteries: theoretical,
+ experimental and clinical principles},
+ Author = {Nichols, W.W. and O'Rourke, M.F. and Hartley, C.},
+ Volume = {340809418},
+ Year = {2005},
+ Publisher = {Hodder Arnold London}
+}
+
+###Book{ nichols-orourke-05,
+ Title = {McDonald's blood flow in arteries: theoretical,
+ experimental and clinical principles},
+ Author = {Nichols, W.W. and O'Rourke, M.F. and Hartley, C.},
+ Volume = {340809418},
+ Year = {2005},
+ Publisher = {Hodder Arnold London}
+}
+
+@Book{ nichols_mcdonalds_2011,
+ langid = {english},
+ Location = {{London}},
+ Title = {{{McDonald}}'s {{Blood Flow}} in {{Arteries}}, {{Sixth
+ Edition}}: {{Theoretical}}, {{Experimental}} and {{Clinical
+ Principles}}.},
+ ISBN = {978-1-4441-2878-9},
+ URL = {http://public.eblib.com/choice/publicfullrecord.aspx?p=956467},
+ ShortTitle = {{{McDonald}}'s {{Blood Flow}} in {{Arteries}}, {{Sixth
+ Edition}}},
+ Abstract = {ForewordMichael TaylorForewordDavid A. Kass and Myron L.
+ WeisfeldtPrefaceList of AbbreviationsIntroductionThe nature
+ of flow of a liquidProperties of the arterial wall:
+ theoryProperties of the arterial wall: practiceEndothelial
+ functionGeneral principles for measuring arterial
+ wavesPulsatile pressure-flow relationsUltrasoundWave
+ reflectionsContours of pressure and flow waves in
+ arteriesPrinciples of recording and analysis of arterial
+ waveformsVascular impedanceAortic input impedance as
+ ventricular loadCoupling of the left ventricle with the
+ systemic circulation: implications to cardiac
+ failureCardiac failure: clinical implicationsThe pulmonary
+ circulationThe coronary circulationSpecial
+ circulationsAgingHypertensionInterpretation of blood
+ pressure in epidemiological studies and clinical
+ trialsArterial biomarkersAtherosclerosisSpecific arterial
+ diseaseGeneralized and metabolic diseaseTherapeutic
+ strategiesExerciseCentral arterial pressureLifestyle and
+ environmentPressure pulse waveform analysisBibliography.},
+ Publisher = {{CRC Press}},
+ URLDate = {2019-02-06},
+ Year = {2011},
+ Author = {Nichols, Wilmer and O'Rourke, Michael and Vlachopoulos,
+ Charalambos},
+ Note = {OCLC: 1027501178}
+}
+
+@Article{ niederer2006quantitative,
+ Title = {A quantitative analysis of cardiac myocyte relaxation: a
+ simulation study},
+ Author = {Niederer, SA and Hunter, PJ and Smith, NP},
+ Journal = {Biophysical journal},
+ Volume = {90},
+ Number = {5},
+ Pages = {1697--1722},
+ Year = {2006},
+ Publisher = {Elsevier}
+}
+
+@Article{ niederer_analyses_2012,
+ Title = {Analyses of the Redistribution of Work following Cardiac
+ Resynchronisation Therapy in a Patient Specific Model},
+ Author = {Niederer, S.A. and Lamata, P. and Plank, G. and
+ Chinchapatnam, P. and Ginks, M. and Rhode, K. and Rinaldi,
+ C.A. and Razavi, R. and Smith, N.P.},
+ Journal = {{PLoS} {ONE}},
+ Year = {2012},
+ Month = aug,
+ Number = {8},
+ Pages = {e43504},
+ Volume = {7},
+ DOI = {10.1371/journal.pone.0043504},
+ Editor = {Bauer, Wolfgang Rudolf},
+ File = {Niederer_2012.pdf:/home/hoermann/.zotero/zotero/krpbc0h6.default/zotero/storage/8THVZ4MD/Niederer_2012.pdf:application/pdf},
+ ISSN = {1932-6203},
+ Language = {en},
+ URL = {http://dx.plos.org/10.1371/journal.pone.0043504},
+ URLDate = {2014-11-28}
+}
+
+@Article{ niederer_biophysical_2012,
+ Title = {Biophysical Modeling to Simulate the Response to Multisite
+ Left Ventricular Stimulation Using a Quadripolar Pacing
+ Lead},
+ Author = {Niederer, S.A. and Shetty, A.K. and Plank, G. and Bostock,
+ J. and Razavi, R. and Smith, N.P. and Rinaldi, C.A.},
+ Journal = {Pacing and Clinical Electrophysiology},
+ Year = {2012},
+ Month = feb,
+ Number = {2},
+ Pages = {204--214},
+ Volume = {35},
+ DOI = {10.1111/j.1540-8159.2011.03243.x},
+ File = {Niederer2012.pdf:/home/hoermann/.zotero/zotero/krpbc0h6.default/zotero/storage/XC4X2ZT5/Niederer2012.pdf:application/pdf},
+ ISSN = {01478389},
+ Language = {en},
+ ShortTitle = {Biophysical Modeling to Simulate the Response to Multisite
+ Left Ventricular Stimulation Using a Quadripolar Pacing
+ Lead},
+ URL = {http://doi.wiley.com/10.1111/j.1540-8159.2011.03243.x},
+ URLDate = {2014-11-28}
+}
+
+@Article{ niederer_length-dependent_2011,
+ Title = {Length-dependent tension in the failing heart and the
+ efficacy of cardiac resynchronization therapy},
+ Author = {Niederer, S. A. and Plank, G. and Chinchapatnam, P. and
+ Ginks, M. and Lamata, P. and Rhode, K.S. and Rinaldi, C.A.
+ and Razavi, R. and Smith, N.P.},
+ Journal = {Cardiovascular Research},
+ Year = {2011},
+ Month = feb,
+ Number = {2},
+ Pages = {336--343},
+ Volume = {89},
+ DOI = {10.1093/cvr/cvq318},
+ File = {Niederer2011.pdf:/home/hoermann/.zotero/zotero/krpbc0h6.default/zotero/storage/5MQG73PM/Niederer2011.pdf:application/pdf},
+ ISSN = {0008-6363},
+ Language = {en},
+ URL = {http://cardiovascres.oxfordjournals.org/cgi/doi/10.1093/cvr/cvq318},
+ URLDate = {2014-11-27}
+}
+
+@Article{ nielles-vallespin2013mrm,
+ Title = {In vivo diffusion tensor MRI of the human heart:
+ reproducibility of breath-hold and navigator-based
+ approaches.},
+ Author = {Nielles-Vallespin, Sonia and Mekkaoui, Choukri and
+ Gatehouse, Peter and Reese, Timothy G. and Keegan, Jennifer
+ and Ferreira, Pedro F. and Collins, Steve and Speier, Peter
+ and Feiweier, Thorsten and {de Silva}, Ranil and Jackowski,
+ Marcel P. and Pennell, Dudley J. and Sosnovik, David E. and
+ Firmin, David},
+ Journal = {Magn Reson Med},
+ Year = {2013},
+ Month = {Aug},
+ Number = {2},
+ Pages = {454--465},
+ Volume = {70},
+ Abstract = {The aim of this study was to implement a quantitative in
+ vivo cardiac diffusion tensor imaging (DTI) technique that
+ was robust, reproducible, and feasible to perform in
+ patients with cardiovascular disease. A stimulated-echo
+ single-shot echo-planar imaging (EPI) sequence with zonal
+ excitation and parallel imaging was implemented, together
+ with a novel modification of the prospective navigator
+ (NAV) technique combined with a biofeedback mechanism. Ten
+ volunteers were scanned on two different days, each time
+ with both multiple breath-hold (MBH) and NAV multislice
+ protocols. Fractional anisotropy (FA), mean diffusivity
+ (MD), and helix angle (HA) fiber maps were created.
+ Comparison of initial and repeat scans showed good
+ reproducibility for both MBH and NAV techniques for FA (P >
+ 0.22), MD (P > 0.15), and HA (P > 0.28). Comparison of MBH
+ and NAV FA (FAMBHday1 = 0.60 ± 0.04, FANAVday1 = 0.60 ±
+ 0.03, P = 0.57) and MD (MDMBHday1 = 0.8 ± 0.2 à 10(-3)
+ mm(2) /s, MDNAVday1 = 0.9 ± 0.2 à 10( -3) mm(2) /s, P =
+ 0.07) values showed no significant differences, while HA
+ values (HAMBHday1Endo = 22 ± 10°, HAMBHday1Mid-Endo = 20
+ ± 6°, HAMBHday1Mid-Epi = -1 ± 6°, HAMBHday1Epi = -17 ±
+ 6°, HANAVday1Endo = 7 ± 7°, HANAVday1Mid-Endo = 13 ±
+ 8°, HANAVday1Mid-Epi = -2 ± 7°, HANAVday1Epi = -14 ±
+ 6°) were significantly different. The scan duration was
+ 20\% longer with the NAV approach. Currently, the MBH
+ approach is the more robust in normal volunteers. While the
+ NAV technique still requires resolution of some bulk motion
+ sensitivity issues, these preliminary experiments show its
+ potential for in vivo clinical cardiac diffusion tensor
+ imaging and for delivering high-resolution in vivo 3D DTI
+ tractography of the heart.},
+ DOI = {10.1002/mrm.24488},
+ Institution = {Cardiovascular MR Unit, Royal Brompton And Harefield NHS
+ Foundation Trust, London, UK.
+ s.nielles-vallespin@rbht.nhs.uk},
+ Keywords = {Biofeedback, Psychology, methods; Breath Holding;
+ Cardiac-Gated Imaging Techniques, methods; Diffusion Tensor
+ Imaging, methods; Feasibility Studies; Humans; Image
+ Enhancement, methods; Image Interpretation,
+ Computer-Assisted, methods; Reproducibility of Results;
+ Sensitivity and Specificity; Ventricular Dysfunction, Left,
+ pathology},
+ Language = {eng},
+ medline-pst = {ppublish},
+ owner = {stoeckc},
+ pmid = {23001828},
+ timestamp = {2015.07.24},
+ URL = {http://dx.doi.org/10.1002/mrm.24488}
+}
+
+@Article{ nielles2013,
+ Title = {{In vivo diffusion tensor MRI of the human heart:
+ Reproducibility of breath-hold and navigator-based
+ approaches}},
+ Author = {Nielles-Vallespin, S. and Mekkaoui, C. and Gatehouse, P.
+ and Reese, T. G. and Keegan, J. and Ferreira, P. F. and
+ Collins, S. and Speier, P. and Feiweier, T. and Silva, R.
+ and Jackowski, M. P. and Pennell, D. J. and Sosnovik, D. E.
+ and Firmin, D.},
+ Journal = {Magnetic Resonance in Medicine},
+ Volume = {70},
+ Number = {2},
+ Pages = {454--465},
+ Year = {2013},
+ Publisher = {Wiley Online Library}
+}
+
+@Article{ nitsche-71,
+ Author = {Nitsche, J.},
+ Journal = {Abh. Math. Sem. Univ. Hamburg},
+ Pages = {9--15},
+ Title = {\"{U}ber ein {V}ariationsprinzip zur {L}\"osung von
+ {D}irichlet-{P}roblemen bei {V}erwendung von
+ {T}eilr\"aumen, die keinen {R}andbedingungen unterworfen
+ sind},
+ Volume = {36},
+ Year = {1971}
+}
+
+###Article{ nitsche-71,
+ Author = {Nitsche, J.},
+ Title = {\"Uber ein {V}ariationsprinzip zur {L}\"osung von
+ {D}irichlet-{P}roblemen bei {V}erwendung von
+ {T}eilr\"aumen, die keinen {R}andbedingungen unterworfen
+ sind},
+ Journal = {Abh. Math. Sem. Univ. Hamburg},
+ Volume = {36},
+ Year = {1971},
+ Pages = {9--15}
+}
+
+###Article{ nitsche-71,
+ Author = {Nitsche, J.},
+ Journal = {Abh. Math. Sem. Univ. Hamburg},
+ Pages = {9--15},
+ Title = {\"{U}ber ein {V}ariationsprinzip zur {L}\"osung von
+ {D}irichlet-{P}roblemen bei {V}erwendung von
+ {T}eilr\"aumen, die keinen {R}andbedingungen unterworfen
+ sind},
+ Volume = {36},
+ Year = {1971}
+}
+
+###Article{ nitsche-71,
+ Author = {Nitsche, J.},
+ Title = {\"Uber ein {V}ariationsprinzip zur {L}\"osung von
+ {D}irichlet-{P}roblemen bei {V}erwendung von
+ {T}eilr\"aumen, die keinen {R}andbedingungen unterworfen
+ sind},
+ Journal = {Abh. Math. Sem. Univ. Hamburg},
+ Volume = {36},
+ Year = {1971},
+ Pages = {9--15}
+}
+
+@Article{ nkonga-guillard-94,
+ Author = {Nkonga, B. and Guillard, H.},
+ fjournal = {Computer Methods in Applied Mechanics and Engineering},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Number = {1-2},
+ Pages = {183--204},
+ Title = {Godunov type method on nonstructured meshes for
+ three-dimensional moving boundary problems},
+ Volume = {113},
+ Year = {1994}
+}
+
+###Article{ nkonga-guillard-94,
+ Author = {Nkonga, B. and Guillard, H.},
+ fjournal = {Computer Methods in Applied Mechanics and Engineering},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Number = {1-2},
+ Pages = {183--204},
+ Title = {Godunov type method on nonstructured meshes for
+ three-dimensional moving boundary problems},
+ Volume = {113},
+ Year = {1994}
+}
+
+@PhdThesis{ nobile-01,
+ Author = {Nobile, F.},
+ School = {EPFL, Switzerland},
+ Title = {Numerical approximation of fluid-structure interaction
+ problems with application to haemodynamics},
+ Year = {2001}
+}
+
+###PhdThesis{ nobile-01,
+ Author = {Nobile, F.},
+ School = {EPFL, Switzerland},
+ Title = {Numerical approximation of fluid-structure interaction
+ problems with application to haemodynamics},
+ Year = {2001}
+}
+
+@Article{ nobile2011,
+ Author = {Nobile, F. and Quarteroni, A. and Ruiz-Baier, R.},
+ Title = {An active strain electromechanical model for cardiac
+ tissue},
+ Journal = {International Journal for Numerical Methods in Biomedical
+ Engineering},
+ Volume = {28},
+ Number = {1},
+ Publisher = {John Wiley & Sons, Ltd},
+ ISSN = {2040-7947},
+ DOI = {10.1002/cnm.1468},
+ Pages = {52--71},
+ Keywords = {cardiac electromechanical coupling, bidomain equations,
+ reactionâdiffusion problem, active strain, nonlinear
+ elasticity, finite elements},
+ Year = {2012}
+}
+
+@Article{ nolte2013mbec,
+ Title = {Myocardial perfusion distribution and coronary arterial
+ pressure and flow signals: clinical relevance in relation
+ to multiscale modeling, a review},
+ Author = {Nolte, Froukje and Hyde, Eoin R. and Rolandi, Cristina and
+ Lee, Jack and van Horssen, Pepijn and Asrress, Kal and van
+ den Wijngaard, Jeroen P. H. M. and Cookson, Andrew N. and
+ van de Hoef, Tim and Chabiniok, Radomir and et al.},
+ Journal = {Medical and Biological Engineering and Computing},
+ Year = {2013},
+ Number = {11},
+ Pages = {1271--1286},
+ Volume = {51},
+ DOI = {10.1007/s11517-013-1088-8},
+ File = {:Nolte2013MBEC.pdf:PDF},
+ ISSN = {1741-0444},
+ Keywords = {Perfusion},
+ Publisher = {Springer Science + Business Media},
+ URL = {http://dx.doi.org/10.1007/s11517-013-1088-8}
+}
+
+@Unpublished{ nolte2020cib,
+ Title = {{Validation of 4D-flow-based pressure difference
+ estimators}},
+ Author = {Nolte, David and Urbina, Jes{\'u}s and Sotelo, Julio and
+ Sok, Leo and Montalba, Cristian and Valverde, Israel and
+ Osses, Axel and Uribe, Sergio and Bertoglio, Cristobal},
+ URL = {https://hal.archives-ouvertes.fr/hal-02113750},
+ Note = {working paper or preprint},
+ Year = {2021},
+ Keywords = {validation ; 4D flow ; pressure difference ; catheter ;
+ PPE ; STE},
+ PDF = {https://hal.archives-ouvertes.fr/hal-02113750/file/preprint.pdf},
+ hal_id = {hal-02113750},
+ hal_version = {v1}
+}
+
+@Article{ nolte_reducing_2019,
+ langid = {english},
+ Title = {Reducing the Impact of Geometric Errors in Flow
+ Computations Using Velocity Measurements},
+ ISSN = {2040-7939, 2040-7947},
+ URL = {https://onlinelibrary.wiley.com/doi/abs/10.1002/cnm.3203},
+ DOI = {10.1002/cnm.3203},
+ JournalTitle = {International Journal for Numerical Methods in Biomedical
+ Engineering},
+ URLDate = {2019-08-10},
+ Date = {2019},
+ Pages = {e3203},
+ Author = {Nolte, David and Bertoglio, Cristobal}
+}
+
+@Article{ nolte_validation_2020,
+ Title = {Validation of {{4D}}-Flow-Based Pressure Map Estimators},
+ Author = {Nolte, David and Urbina, Jes{\'u}s and Sotelo, Julio and
+ Montalba, Cristian and Sok, Leo and Osses, Axel and
+ Bertoglio, Crist{\'o}bal and Uribe, Sergio},
+ Year = {2020},
+ Journal = {JRMI},
+ Number = {submitted}
+}
+
+@Article{ nouri-poupaud-95,
+ Author = {Nouri, A. and Poupaud, F.},
+ Journal = {J. Diff. Eq.},
+ Number = {1},
+ Pages = {71-88},
+ Title = {An existence theorem for the multifluid {Navier-Stokes}
+ problem},
+ Volume = {122},
+ Year = {1995}
+}
+
+###Article{ nouri-poupaud-95,
+ Author = {Nouri, A. and Poupaud, F.},
+ Journal = {J. Diff. Eq.},
+ Number = {1},
+ Pages = {71-88},
+ Title = {An existence theorem for the multifluid {Navier-Stokes}
+ problem},
+ Volume = {122},
+ Year = {1995}
+}
+
+@Article{ nucifora2007radiology,
+ Title = {Diffusion-Tensor {MR} and Imaging and Tractography:
+ Exploring and Brain and Microstructure and Connectivity},
+ Author = {Nucifora, Paolo and Verma, Ragini and Lee, Seung-Koo and
+ Melhem, Elias},
+ Journal = {Radiology},
+ Year = {2007},
+ Number = {2},
+ Volume = {245},
+ File = {:Nucifora2007Radiology.pdf:PDF},
+ review = {Note: This copy is for your personal non-commercial use
+ only. To order presentation-ready copies for distribution
+ to your colleagues or clients, contact us at
+ www.rsna.org/rsnarights.
+
+ Diffusion-Tensor {MR} Imaging and Tractography: Exploring
+ Brain Microstructure and Connectivity1
+
+ Paolo G. P. Nucifora, MD, PhD Ragini Verma, PhD Diffusion
+ magnetic resonance (MR) imaging is evolving
+
+ into a potent tool in the examination of the central
+ nervous Seung-Koo Lee, MD, PhD system. Although it is often
+ used for the detection of acute Elias R. Melhem, MD, PhD
+ ischemia, evaluation of directionality in a diffusion mea-
+
+ surement can be useful in white matter, which demon-
+ strates strong diffusion anisotropy. Techniques such as
+ diffusion-tensor imaging offer a glimpse into brain micro-
+ structure at a scale that is not easily accessible with
+ other modalities, in some cases improving the detection and
+ characterization of white matter abnormalities. Diffusion
+ MR tractography offers an overall view of brain anatomy,
+ including the degree of connectivity between different re-
+ gions of the brain. However, optimal utilization of the
+ wide range of data provided with directional diffusion {MR}
+ mea- surements requires careful attention to acquisition
+ and postprocessing. This article will review the principles
+ of diffusion contrast and anisotropy, as well as clinical
+ appli- cations in psychiatric, developmental,
+ neurodegenerative, neoplastic, demyelinating, and other
+ types of disease.
+
+ RSNA, 2007
+
+ 1 From the Department of Radiology, Sections of Neurora-
+ diology (P.G.P.N., E.R.M.) and Biomedical Image Analysis
+ (R.V.), Hospital of the University of Pennsylvania, 3400
+ Spruce St, Philadelphia, PA 19104; and Department of
+ Diagnostic Radiology and Research Institute of Radiologi-
+ cal Science, Yonsei University College of Medicine, Seoul,
+ Korea (S.K.L.). Received March 14, 2006; revision re-
+ quested May 18; revision received November 10; ac- cepted
+ December 18; final version accepted February 12, 2007;
+ final review by E.R.M. May 17. Address correspondence to
+ E.R.M. (e-mail: emelhem@rad .upenn.edu).
+
+ RSNA, 2007
+
+ Radiology: Volume 245: Number 2?November 2007 367
+
+ REVIEWS AND COMMENTARY REVIEW}
+}
+
+@Article{ ohno-shirota-98,
+ Annote = {mhd, existence},
+ Author = {Ohno, M. and Shirota, T.},
+ code = {mhd27},
+ Journal = {Arch. Rational Mech. Anal},
+ Pages = {259-299},
+ Title = {On the initial-boundary-value problem for the linearized
+ equations of magnetohydrodynamics},
+ Volume = {144},
+ Year = {1998}
+}
+
+###Article{ ohno-shirota-98,
+ Annote = {mhd, existence},
+ Author = {Ohno, M. and Shirota, T.},
+ code = {mhd27},
+ Journal = {Arch. Rational Mech. Anal},
+ Pages = {259-299},
+ Title = {On the initial-boundary-value problem for the linearized
+ equations of magnetohydrodynamics},
+ Volume = {144},
+ Year = {1998}
+}
+
+@Article{ olivetti1990circ,
+ Title = {Side-to-side slippage of myocytes participates in
+ ventricular wall remodeling acutely after myocardial
+ infarction in rats.},
+ Author = {Olivetti, G and Capasso, J M and Sonnenblick, E H and
+ Anversa, P},
+ Journal = {Circulation Research},
+ Year = {1990},
+ Number = {1},
+ Pages = {23-34},
+ Volume = {67},
+ Abstract = {To determine whether acute left ventricular failure
+ associated with myocardial infarction leads to
+ architectural changes in the spared nonischemic portion of
+ the ventricular wall, large infarcts were produced in rats,
+ and the animals were killed 2 days after surgery. Left
+ ventricular end-diastolic pressure was increased, whereas
+ left ventricular dP/dt and systolic pressure were
+ decreased, indicating the presence of severe ventricular
+ dysfunction. Absolute infarct size, determined by measuring
+ the fraction of myocyte nuclei lost from the left
+ ventricular free wall, averaged 63%. Transverse midchamber
+ diameter increased by 20%, and wall thickness diminished by
+ 33%. The mural number of myocytes in this spared region of
+ the left ventricular free wall decreased by 36% and the
+ capillary profiles by 40%. The combination of these
+ functional abnormalities and structural rearrangement of
+ the wall resulted in a 7.8-fold increase in diastolic wall
+ stress. A comparable analysis of the interventricular
+ septum demonstrated a 24% reduction in the number of cells
+ across the septal thickness, whereas capillaries were
+ diminished by 26%. Moreover, a 7.2-fold elevation in
+ diastolic stress was computed in this region of the
+ ventricle. The augmentation in diastolic stress was
+ associated with a 22% and a 16% myocyte cellular
+ hypertrophy in the wall and septum, respectively. In
+ conclusion, side-to-side slippage of myocytes in the
+ myocardium occurs in association with ventricular
+ dilatation after a large myocardial infarction and
+ contributes to ventricular remodeling and the occurrence of
+ decompensated eccentric hypertrophy.},
+ comments = {"Moreover, a 7.2-fold elevation in diastolic stress was
+ computed in this region of the ventricle."},
+ DOI = {10.1161/01.RES.67.1.23},
+ EPrint = {http://circres.ahajournals.org/content/67/1/23.full.pdf+html},
+ File = {olivetti90.pdf:olivetti90.pdf:PDF},
+ timestamp = {2015/09/14},
+ URL = {http://circres.ahajournals.org/content/67/1/23.abstract}
+}
+
+@PhdThesis{ olufsen-98,
+ Author = {Olufsen, M.S.},
+ School = {Roskilde University},
+ Title = {Modeling the Arterial System with Reference to an
+ Anesthesia Simulator},
+ Year = {1998}
+}
+
+###PhdThesis{ olufsen-98,
+ Author = {Olufsen, M.S.},
+ School = {Roskilde University},
+ Title = {Modeling the Arterial System with Reference to an
+ Anesthesia Simulator},
+ Year = {1998}
+}
+
+@Article{ omran_silent_2003,
+ Title = {Silent and Apparent Cerebral Embolism after Retrograde
+ Catheterisation of the Aortic Valve in Valvular Stenosis: A
+ Prospective, Randomised Study},
+ Volume = {361},
+ ShortTitle = {Silent and Apparent Cerebral Embolism after Retrograde
+ Catheterisation of the Aortic Valve in Valvular Stenosis},
+ Number = {9365},
+ JournalTitle = {The Lancet},
+ Year = {2003},
+ Pages = {1241--1246},
+ Author = {Omran, Heyder and Schmidt, Harald and Hackenbroch,
+ Matthias and Illien, Stefan and Bernhardt, Peter and von
+ der Recke, Giso and Fimmers, Rolf and Flacke, Sebastian and
+ Layer, Günter and Pohl, Christoph},
+ Options = {useprefix=true}
+}
+
+@Article{ oparil2018hypert,
+ Author = {Oparil, Suzanne and Acelajado, Maria Czarina and Bakris,
+ George L. and Berlowitz, Dan R. and C{\'\i}fkov{\'a},
+ Renata and Dominiczak, Anna F. and Grassi, Guido and
+ Jordan, Jens and Poulter, Neil R. and Rodgers, Anthony and
+ Whelton, Paul K.},
+ Date = {2018/03/22/online},
+ date-added = {2018-08-26 11:36:02 +0000},
+ date-modified = {2018-08-26 11:36:02 +0000},
+ day = {22},
+ Journal = {Nature Reviews Disease Primers},
+ l3 = {10.1038/nrdp.2018.14; },
+ m3 = {Primer},
+ Month = {03},
+ Pages = {18014 EP},
+ Publisher = {Macmillan Publishers Limited SN -},
+ Title = {Hypertension},
+ ty = {JOUR},
+ URL = {http://dx.doi.org/10.1038/nrdp.2018.14},
+ Volume = {4},
+ Year = {2018},
+ bdsk-url-1 = {http://dx.doi.org/10.1038/nrdp.2018.14}
+}
+
+@InCollection{ orbanz2011bayesian,
+ Title = {Bayesian nonparametric models},
+ Author = {Orbanz, Peter and Teh, Yee Whye},
+ BookTitle = {Encyclopedia of Machine Learning},
+ Pages = {81--89},
+ Year = {2011},
+ Publisher = {Springer}
+}
+
+@Article{ orn2007ajc,
+ Title = {Effect of left ventricular scar size, location, and
+ transmurality on left ventricular remodeling with healed
+ myocardial infarction.},
+ Author = {Orn, Stein and Manhenke, Cord and Anand, Inder S. and
+ Squire, Iain and Nagel, Eike and Edvardsen, Thor and
+ Dickstein, Kenneth},
+ Journal = {Am J Cardiol},
+ Year = {2007},
+ Month = {Apr},
+ Number = {8},
+ Pages = {1109--1114},
+ Volume = {99},
+ Abstract = {Studies of patients with acute myocardial infarction (MI)
+ suggest that anterior transmural infarcts are associated
+ with greater left ventricular (LV) remodeling compared with
+ nontransmural nonanterior infarctions. It is unclear
+ whether this relation also exists in long-term survivors of
+ MI. Cardiac magnetic resonance imaging was used to explore
+ the relation between myocardial scar size, localization,
+ transmurality, and degree of long-term LV remodeling in
+ patients with healed MI. Subjects were recruited from a
+ registry of patients with healed MI who participated in the
+ OPTIMAAL trial. Cardiac magnetic resonance imaging was
+ performed to assess LV mass, volumes, LV ejection fraction,
+ and myocardial scarring, adjusting for myocardial ischemia.
+ Fifty-seven patients (mean age 69 +/- 10 years mean
+ ejection fraction 49 +/- 13\%) were studied 4.4 +/- 0.4
+ years after MI. Anterior scar was found in 19 patients and
+ nonanterior scar in 33, whereas 5 patients did not show
+ myocardial scar. Transmural scar was evident in 36
+ patients. In the 52 patients with scar, average total scar
+ size was 13 +/- 8\% of total LV mass. There was a strong
+ linear relation between scar size and LV end-diastolic
+ volume index (r = 0.81, p <0.0001), end-systolic volume
+ index (r = 0.86, p <0.0001), and LV ejection fraction (r =
+ -0.74, p <0.0001). In multivariate analysis, scar size was
+ the strongest independent predictor of ejection fraction
+ and LV volumes independently of scar localization and
+ transmurality. In conclusion, in the studied cohort, there
+ was a linear relation between scar size and ejection
+ fraction and LV volumes. This relation was independent of
+ scar location and transmurality.},
+ DOI = {10.1016/j.amjcard.2006.11.059},
+ Institution = {University of Bergen, Stavanger University Hospital,
+ Stavanger, Norway. drsteinorn@hotmail.com},
+ Keywords = {Aged; Cardiac Volume, physiology; Cicatrix,
+ pathology/physiopathology; Cohort Studies; Contrast Media;
+ Female; Follow-Up Studies; Gadolinium DTPA, diagnostic use;
+ Heart Ventricles, pathology; Humans; Image Enhancement;
+ Longitudinal Studies; Magnetic Resonance Imaging; Male;
+ Middle Aged; Myocardial Infarction,
+ pathology/physiopathology; Myocardial Ischemia,
+ pathology/physiopathology; Myocardium, pathology;
+ Registries; Stroke Volume, physiology; Ventricular
+ Remodeling, physiology; Wound Healing, physiology},
+ Language = {eng},
+ medline-pst = {ppublish},
+ owner = {stoeckc},
+ pii = {S0002-9149(07)00067-7},
+ pmid = {17437737},
+ timestamp = {2015.07.24},
+ URL = {http://dx.doi.org/10.1016/j.amjcard.2006.11.059}
+}
+
+@Article{ oshinski1996improved,
+ Title = {Improved measurement of pressure gradients in aortic
+ coarctation by magnetic resonance imaging},
+ Author = {Oshinski, John N and Parks, W James and Markou, Christos P
+ and Bergman, Harris L and Larson, Blake E and Ku, David N
+ and Mukundan, Srinivasan and Pettigrew, Roderic I},
+ Journal = {J. American College of Cardiology},
+ Volume = {28},
+ Number = {7},
+ Pages = {1818--1826},
+ Year = {1996},
+ Publisher = {Am Coll Cardio Found}
+}
+
+@Article{ osirix,
+ Author = {Rosset, A. and Spadola, L. and Ratib, O.},
+ affiliation = {Department of Radiology University of California Los
+ Angeles Los Angeles California},
+ Title = {OsiriX: An Open-Source Software for Navigating in
+ Multidimensional DICOM Images},
+ Journal = {Journal of Digital Imaging},
+ Publisher = {Springer New York},
+ ISSN = {0897-1889},
+ keyword = {Medicine},
+ Pages = {205-216},
+ Volume = {17},
+ Issue = {3},
+ Note = {10.1007/s10278-004-1014-6},
+ Year = {2004}
+}
+
+###Article{ osirix,
+ Author = {Rosset, A. and Spadola, L. and Ratib, O.},
+ affiliation = {Department of Radiology University of California Los
+ Angeles Los Angeles California},
+ Title = {OsiriX: An Open-Source Software for Navigating in
+ Multidimensional DICOM Images},
+ Journal = {Journal of Digital Imaging},
+ Publisher = {Springer New York},
+ ISSN = {0897-1889},
+ keyword = {Medicine},
+ Pages = {205-216},
+ Volume = {17},
+ Issue = {3},
+ URL = {http://dx.doi.org/10.1007/s10278-004-1014-6},
+ Note = {10.1007/s10278-004-1014-6},
+ Year = {2004}
+}
+
+@Article{ osman1999mrm,
+ Title = {Cardiac Motion Tracking Using {CINE} Harmonic Phase
+ ({HARP}) Magnetic Resonance Imaging},
+ Author = {Osman, Nael F. and Kerwin, William S. and {McVeigh},
+ Elliot R. and Prince, Jerry L.},
+ Journal = {Magnetic Resonance in Medicine},
+ Year = {1999},
+ Month = dec,
+ Number = {6},
+ Pages = {1048--1060},
+ Volume = {42},
+ Abstract = {This article introduces a new image processing technique
+ for rapid analysis of tagged cardiac magnetic resonance
+ image sequences. The method uses isolated spectral peaks in
+ SPAMM-tagged magnetic resonance images, which contain
+ information about cardiac motion. The inverse Fourier
+ transform of a spectral peak is a complex image whose
+ calculated angle is called a harmonic phase (HARP) image.
+ It is shown how two HARP image sequences can be used to
+ automatically and accurately track material points through
+ time. A rapid, semiautomated procedure to calculate
+ circumferential and radial Lagrangian strain from tracked
+ points is described. This new computational approach
+ permits rapid analysis and visualization of myocardial
+ strain within 5-10 min after the scan is complete. Its
+ performance is demonstrated on MR image sequences
+ reflecting both normal and abnormal cardiac motion. Results
+ from the new method are shown to compare very well with a
+ previously validated tracking algorithm.},
+ ISSN = {0740-3194},
+ owner = {david},
+ pmcid = {PMC2570035},
+ pmid = {10571926},
+ timestamp = {2015-05-28 17:38:39},
+ URL = {http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2570035/},
+ URLDate = {2015-05-28}
+}
+
+@Article{ ott_local_2004,
+ Title = {A Local Ensemble {{Kalman}} Filter for Atmospheric Data
+ Assimilation},
+ Volume = {56},
+ ISSN = {null},
+ URL = {https://doi.org/10.3402/tellusa.v56i5.14462},
+ DOI = {10.3402/tellusa.v56i5.14462},
+ Abstract = {In this paper, we introduce a new, local formulation of
+ the ensemble Kalman filter approach for atmospheric data
+ assimilation. Our scheme is based on the hypothesis that,
+ when the Earthâs surface is divided up into local regions
+ of moderate size, vectors of the forecast uncertainties in
+ such regions tend to lie in a subspace of much lower
+ dimension than that of the full atmospheric state vector of
+ such a region. Ensemble Kalman filters, in general, take
+ the analysis resulting from the data assimilation to lie in
+ the same subspace as the expected forecast error. Under our
+ hypothesis the dimension of the subspace corresponding to
+ local regions is low. This is used in our scheme to allow
+ operations only on relatively low-dimensional matrices. The
+ data assimilation analysis is performed locally in a manner
+ allowing massively parallel computation to be exploited.
+ The local analyses are then used to construct global states
+ for advancement to the next forecast time. One advantage,
+ which may take on more importance as ever-increasing
+ amounts of remotely-sensed satellite data become available,
+ is the favorable scaling of the computational cost of our
+ method with increasing data size, as compared to other
+ methods that assimilate data sequentially. The method, its
+ potential advantages, properties, and implementation
+ requirements are illustrated by numerical experiments on
+ the Lorenz-96 model. It is found that accurate analysis can
+ be achieved at a cost which is very modest compared to that
+ of a full global ensemble Kalman filter.},
+ Number = {5},
+ JournalTitle = {Tellus A: Dynamic Meteorology and Oceanography},
+ URLDate = {2019-02-27},
+ Year = {2004-01-01},
+ Pages = {415-428},
+ Author = {Ott, Edward and Hunt, Brian R. and Szunyogh, Istvan and
+ Zimin, Aleksey V. and Kostelich, Eric J. and Corazza,
+ Matteo and Kalnay, Eugenia and Patil, D. J. and Yorke,
+ James A.}
+}
+
+@Book{ otto2009valvular,
+ Title = {Valvular heart disease: a companion to Braunwaldâs heart
+ disease},
+ Author = {Otto, Catherine M and Bonow, Robert O},
+ Journal = {Heart Disease},
+ Volume = {55},
+ Pages = {86976},
+ Year = {2009},
+ Note = {ISBN 978-1-4160-5892-2}
+}
+
+@Article{ otto2014reviewas,
+ Title = {Aortic-valve stenosis from patients at risk to severe
+ valve obstruction},
+ Author = {Otto, C. and Prendergast, B.},
+ Journal = {New England Journal of Medicine},
+ Volume = {371},
+ Number = {8},
+ Pages = {744--756},
+ Year = {2014},
+ Publisher = {Mass Medical Soc}
+}
+
+@Article{ oubel2012reconstruction,
+ Author = {Estanislao Oubel and M\8Eriam Koob and Colin Studholme and
+ Jean-Louis Dietemann and Fran\8Dois Rousseau},
+ Title = {Reconstruction of scattered data in fetal diffusion {MRI}
+ },
+ Journal = {Medical Image Analysis },
+ Year = {2012},
+ Volume = {16},
+ Pages = {28 - 37},
+ Number = {1},
+ ISSN = {1361-8415}
+}
+
+@Article{ pant2014ijnmbe,
+ Author = {Pant, S. and FabrÃÅ¡ges, B. and Gerbeau, J-F. and
+ Vignon-Clementel, I. E.},
+ Title = {A methodological paradigm for patient-specific multi-scale
+ CFD simulations: from clinical measurements to parameter
+ estimates for individual analysis},
+ Journal = {International Journal for Numerical Methods in Biomedical
+ Engineering},
+ Volume = {30},
+ Number = {12},
+ ISSN = {2040-7947},
+ URL = {http://dx.doi.org/10.1002/cnm.2692},
+ DOI = {10.1002/cnm.2692},
+ Pages = {1614--1648},
+ Keywords = {parameter estimation, unscented Kalman filter,
+ patient-specific simulations, multi-scale modelling, lumped
+ parameter models, computational fluid dynamics},
+ Year = {2014}
+}
+
+###Article{ pant2014ijnmbe,
+ Author = {Pant, S. and Fabr\`eges, B. and Gerbeau, J-F. and
+ Vignon-Clementel, I. E.},
+ Title = {A methodological paradigm for patient-specific multi-scale
+ CFD simulations: from clinical measurements to parameter
+ estimates for individual analysis},
+ Journal = {International Journal for Numerical Methods in Biomedical
+ Engineering},
+ Volume = {30},
+ Number = {12},
+ ISSN = {2040-7947},
+ DOI = {10.1002/cnm.2692},
+ Pages = {1614--1648},
+ Keywords = {parameter estimation, unscented Kalman filter,
+ patient-specific simulations, multi-scale modelling, lumped
+ parameter models, computational fluid dynamics},
+ Year = {2014}
+}
+
+@Article{ pant_methodological_2014,
+ langid = {english},
+ Title = {A Methodological Paradigm for Patient-Specific Multi-Scale
+ {{CFD}} Simulations: From Clinical Measurements to
+ Parameter Estimates for Individual Analysis},
+ Volume = {30},
+ ISSN = {20407939},
+ URL = {http://doi.wiley.com/10.1002/cnm.2692},
+ DOI = {10.1002/cnm.2692},
+ ShortTitle = {A Methodological Paradigm for Patient-Specific Multi-Scale
+ {{CFD}} Simulations},
+ Abstract = {A new framework for estimation of lumped (for instance,
+ Windkessel) model parameters from uncertain clinical
+ measurements is presented. The ultimate aim is to perform
+ patient-speciï¬c haemodynamic analysis. This framework is
+ based on sensitivity analysis tools and the sequential
+ estimation approach of the unscented Kalman ï¬lter.
+ Sensitivity analysis and parameter estimation are performed
+ in lumped parameter models, which act as reduced order
+ surrogates of the 3D domain for haemodynamic analysis.
+ While the goal of sensitivity analysis is to assess
+ potential identiï¬ability problems, the unscented Kalman
+ ï¬lter estimation leads to parameter estimates based on
+ clinical measurements and modelling assumptions. An
+ application of such analysis and parameter estimation
+ methodology is demonstrated for synthetic and real data.
+ Equality constraints on various physiological parameters
+ are enforced. Since the accuracy of the Windkessel
+ parameter estimates depends on the lumped parameter
+ representativeness, the latter is iteratively improved by
+ running few 3D simulations while simultaneously improving
+ the former. Such a method is applied on a patientspeciï¬c
+ aortic coarctation case. Less than 3\% and 9\% errors
+ between the clinically measured quantities and 3D
+ simulation results for rest and stress are obtained,
+ respectively. Knowledge on how these Windkessel parameters
+ change from rest to stress can thus be learned by such an
+ approach. Lastly, it is demonstrated that the proposed
+ approach is capable of dealing with a wide variety of
+ measurements and cases where the pressure and ï¬ow
+ clinical measurements are not taken simultaneously.
+ Copyright © 2014 John Wiley \& Sons, Ltd.},
+ Number = {12},
+ JournalTitle = {International Journal for Numerical Methods in Biomedical
+ Engineering},
+ URLDate = {2019-01-29},
+ Year = {2014-12},
+ Pages = {1614-1648},
+ Author = {Pant, S. and Fabrèges, B. and Gerbeau, J-F. and
+ Vignon-Clementel, I. E.}
+}
+
+@InCollection{ park-felippa-deruntz-77,
+ Author = {Park, K.C. and Felippa, C.A. and Deruntz, J.A.},
+ BookTitle = {Computational Methods for Fluid-Structure Interaction
+ Problems},
+ Editor = {Belytschko. T. and Geers, T.L.},
+ Pages = {95---124},
+ Publisher = {American Society of Mechanical Engineers},
+ Title = {Stabilization of staggered solution procedures for
+ fluid-structure interaction analysis},
+ Volume = {26},
+ Year = {1977}
+}
+
+###InCollection{ park-felippa-deruntz-77,
+ Author = {Park, K.C. and Felippa, C.A. and Deruntz, J.A.},
+ BookTitle = {Computational Methods for Fluid-Structure Interaction
+ Problems},
+ Editor = {Belytschko. T. and Geers, T.L.},
+ Pages = {95---124},
+ Publisher = {American Society of Mechanical Engineers},
+ Title = {Stabilization of staggered solution procedures for
+ fluid-structure interaction analysis},
+ Volume = {26},
+ Year = {1977}
+}
+
+@Article{ path-chf,
+ Author = {Auricchio, A. and Stellbrink, C and Sack, S. and et al.},
+ Journal = {J. Am. Coll. Cariol.},
+ Pages = {1895-1898},
+ Title = {Long-term clinical effect of hemodynamically optimized
+ cardiac resynchronization therapy in patients with heart
+ failure and ventricular conduction delay},
+ Volume = {39},
+ Year = {2002}
+}
+
+###Article{ path-chf,
+ Author = {Auricchio, A. and Stellbrink, C and Sack, S. and et al.},
+ Journal = {J. Am. Coll. Cariol.},
+ Pages = {1895-1898},
+ Title = {Long-term clinical effect of hemodynamically optimized
+ cardiac resynchronization therapy in patients with heart
+ failure and ventricular conduction delay},
+ Volume = {39},
+ Year = {2002}
+}
+
+@Article{ patnaik-guirguis-boris-oran-87,
+ Author = {Patnaik, G. and Guirguis, R.H. and Boris, J.P. and Oran,
+ E.S.},
+ Journal = {J. of Comput. Phys.},
+ Pages = {1-20},
+ Title = {A barely implicit correction for the flux-corrected
+ transport},
+ Volume = {71},
+ Year = {1987}
+}
+
+###Article{ patnaik-guirguis-boris-oran-87,
+ Author = {Patnaik, G. and Guirguis, R.H. and Boris, J.P. and Oran,
+ E.S.},
+ Journal = {J. of Comput. Phys.},
+ Pages = {1-20},
+ Title = {A barely implicit correction for the flux-corrected
+ transport},
+ Volume = {71},
+ Year = {1987}
+}
+
+@InProceedings{ peiro-shah-doorly-sherwin-caro-98,
+ Address = {London, U.K.},
+ Author = {Peir{\'o}, J. and Shah, O. and Doorly, D.J. and Sherwin,
+ S.J. and Caro, C.G.},
+ BookTitle = {6th International Conference on Numerical Grid Generation
+ in Computational Field Simulations},
+ Editor = {M. Cross and P. Eiseman and J. Ha{\"u}ser and B. K. Soni
+ and J. F. Thompson},
+ Month = {July 6-9},
+ Organization = {University of Greenwich},
+ Pages = {457-466},
+ Publisher = {International Society for Grid Generation},
+ Title = {Unstructured Viscous Mesh Generation for Haemodynamic Flow
+ Simulation Using High-Order Spectral Elements},
+ Year = {1998}
+}
+
+###InProceedings{ peiro-shah-doorly-sherwin-caro-98,
+ Address = {London, U.K.},
+ Author = {Peir{\'o}, J. and Shah, O. and Doorly, D.J. and Sherwin,
+ S.J. and Caro, C.G.},
+ BookTitle = {6th International Conference on Numerical Grid Generation
+ in Computational Field Simulations},
+ Editor = {M. Cross and P. Eiseman and J. Ha{\"u}ser and B. K. Soni
+ and J. F. Thompson},
+ Month = {July 6-9},
+ Organization = {University of Greenwich},
+ Pages = {457-466},
+ Publisher = {International Society for Grid Generation},
+ Title = {Unstructured Viscous Mesh Generation for Haemodynamic Flow
+ Simulation Using High-Order Spectral Elements},
+ Year = {1998}
+}
+
+@InCollection{ peiro_reduced_2009,
+ langid = {english},
+ Location = {{Milano}},
+ Title = {Reduced Models of the Cardiovascular System},
+ ISBN = {978-88-470-1152-6},
+ URL = {https://doi.org/10.1007/978-88-470-1152-6_10},
+ Abstract = {Due to the large number of vessels involved and the
+ multitude of different length scales required to accurately
+ represent the flow in the various regions of the
+ cardiovascular system, simulations of the flow of blood in
+ the system based on full 3D models (see Chapters 2 and 3)
+ are beyond the capability of current computers and they
+ will be for years to come. Moreover, the huge amount of
+ data that would be generated by such simulations is costly
+ to process and of difficult clinical interpretation.},
+ BookTitle = {Cardiovascular {{Mathematics}}: {{Modeling}} and
+ Simulation of the Circulatory System},
+ Series = {{{MS}}\&{{A}}},
+ Publisher = {{Springer Milan}},
+ URLDate = {2019-02-18},
+ Year = {2009},
+ Pages = {347-394},
+ Author = {Peir{\'o}, Joaquim and Veneziani, Alessandro},
+ Editor = {Formaggia, Luca and Quarteroni, Alfio and Veneziani,
+ Alessandro},
+ DOI = {10.1007/978-88-470-1152-6_10}
+}
+
+@Article{ pellikka2005outcomenonsimpas,
+ Title = {Outcome of 622 adults with asymptomatic, hemodynamically
+ significant aortic stenosis during prolonged follow-up},
+ Author = {Pellikka, Patricia A and Sarano, Maurice E and Nishimura,
+ Rick A and Malouf, Joseph F and Bailey, Kent R and Scott,
+ Christopher G and Barnes, Marion E and Tajik, A Jamil},
+ Journal = {Circulation},
+ Volume = {111},
+ Number = {24},
+ Pages = {3290--3295},
+ Year = {2005},
+ Publisher = {Am Heart Assoc}
+}
+
+@Article{ pennell2010,
+ Author = {Pennell, D.},
+ Title = {Cardiovascular Magnetic Resonance},
+ Volume = {121},
+ Number = {5},
+ Pages = {692--705},
+ Year = {2010},
+ DOI = {10.1161/CIRCULATIONAHA.108.811547},
+ Publisher = {American Heart Association, Inc.},
+ ISSN = {0009-7322},
+ URL = {http://circ.ahajournals.org/content/121/5/692},
+ EPrint = {http://circ.ahajournals.org/content/121/5/692.full.pdf},
+ Journal = {Circulation}
+}
+
+@Article{ perego-veneziani-vergara-11,
+ Author = {Perego, M. and Veneziani, A. and Vergara, C.},
+ Journal = {SIAM J. Sc. Comp.},
+ Number = {3},
+ Pages = {1181-1211},
+ Title = {{A variational approach for estimating the compliance of
+ the cardiovascular tissue: An inverse fluid-structure
+ interaction problem}},
+ Volume = {33},
+ Year = 2011
+}
+
+###Article{ perego-veneziani-vergara-11,
+ Author = {Perego, M. and Veneziani, A. and Vergara, C.},
+ Journal = {SIAM J. Sc. Comp.},
+ Number = {3},
+ Pages = {1181-1211},
+ Title = {{A variational approach for estimating the compliance of
+ the cardiovascular tissue: An inverse fluid-structure
+ interaction problem}},
+ Volume = {33},
+ Year = 2011
+}
+
+@Article{ perego_variational_2011,
+ Title = {A Variational Approach for Estimating the Compliance of
+ the Cardiovascular Tissue: {{An}} Inverse Fluid-Structure
+ Interaction Problem},
+ Volume = {33},
+ ShortTitle = {A Variational Approach for Estimating the Compliance of
+ the Cardiovascular Tissue},
+ Number = {3},
+ JournalTitle = {SIAM Journal on Scientific Computing},
+ Year = {2011},
+ Pages = {1181--1211},
+ Author = {Perego, Mauro and Veneziani, Alessandro and Vergara,
+ Christian}
+}
+
+@InProceedings{ peric-dettmer-05,
+ Author = {Peri{\'c}, D. and Dettmer, W. G.},
+ BookTitle = {5th international Conference on Computational of Shell \&
+ Spatial Structures},
+ Organization = {IASS-IACM},
+ Title = {A computational strategy for interaction of fluid flow
+ with spatial structures},
+ Year = {2005}
+}
+
+###InProceedings{ peric-dettmer-05,
+ Author = {Peri{\'c}, D. and Dettmer, W. G.},
+ BookTitle = {5th international Conference on Computational of Shell \&
+ Spatial Structures},
+ Organization = {IASS-IACM},
+ Title = {A computational strategy for interaction of fluid flow
+ with spatial structures},
+ Year = {2005}
+}
+
+@InProceedings{ perktold-rappitsch-94,
+ Author = {Perktold, K. and Rappitsch, G.},
+ BookTitle = {Computational Methods for Fluid-Structure interaction},
+ code = {fsi12},
+ Editor = {Crolet, J. and Ohayon, R.},
+ Publisher = {Pitman},
+ Title = {Mathematical modeling of local arterial flow and vessel
+ mechanics},
+ Year = {1994}
+}
+
+###InProceedings{ perktold-rappitsch-94,
+ Author = {Perktold, K. and Rappitsch, G.},
+ BookTitle = {Computational Methods for Fluid-Structure interaction},
+ code = {fsi12},
+ Editor = {Crolet, J. and Ohayon, R.},
+ Publisher = {Pitman},
+ Title = {Mathematical modeling of local arterial flow and vessel
+ mechanics},
+ Year = {1994}
+}
+
+@Article{ perktold-rappitsch-95,
+ Author = {Perktold, K. and Rappitsch, G.},
+ Journal = {J. of Biomech.},
+ Pages = {845--856},
+ Title = {Computer simulation of Local Blood Flow and Vessel
+ Mechanics in a Compliant Carotid Artery Bifurcation Model},
+ Volume = {28},
+ Year = {1995}
+}
+
+###Article{ perktold-rappitsch-95,
+ Author = {Perktold, K. and Rappitsch, G.},
+ Journal = {J. of Biomech.},
+ Pages = {845--856},
+ Title = {Computer simulation of Local Blood Flow and Vessel
+ Mechanics in a Compliant Carotid Artery Bifurcation Model},
+ Volume = {28},
+ Year = {1995}
+}
+
+@Book{ perthame,
+ Author = {Perthame, B.},
+ Note = {to appear},
+ Publisher = {Oxford Univ. Press.},
+ Title = {Kinetic formulation of conservation laws}
+}
+
+###Book{ perthame,
+ Author = {Perthame, B.},
+ Note = {to appear},
+ Publisher = {Oxford Univ. Press.},
+ Title = {Kinetic formulation of conservation laws}
+}
+
+@Article{ petersen2006r,
+ Title = {Myocardial tissue phase mapping with cine phase-contrast
+ mr imaging: regional wall motion analysis in healthy
+ volunteers.},
+ Author = {Petersen, Steffen E. and Jung, Bernd A. and Wiesmann,
+ Frank and Selvanayagam, Joseph B. and Francis, Jane M. and
+ Hennig, Juergen and Neubauer, Stefan and Robson, Matthew
+ D.},
+ Journal = {Radiology},
+ Year = {2006},
+ Month = {Mar},
+ Number = {3},
+ Pages = {816--826},
+ Volume = {238},
+ Abstract = {To establish prospectively a database of normal
+ three-dimensional systolic and diastolic endocardial and
+ epicardial velocity values for all myocardial segments in
+ healthy volunteers by using cine phase-contrast velocity
+ magnetic resonance imaging, also called tissue phase
+ mapping (TPM).The study was approved by the institutional
+ ethics committee and was conducted according to principles
+ of the Declaration of Helsinki; each subject provided
+ informed written consent. Ninety-six healthy volunteers (57
+ [59\%] men, 39 [41\%] women; mean age, 38 years +/- 12
+ [standard deviation]) underwent cardiac phase-contrast
+ imaging with a black blood segmented k-space gradient-echo
+ sequence for the analysis of three-dimensional myocardial
+ velocity with high spatial resolution at 1.5 T on basal,
+ midventricular, and apical short-axis views. Eighteen
+ consecutive volunteers were imaged twice to determine
+ interstudy reproducibility, and intra- and interobserver
+ variability values were analyzed. Systolic and diastolic
+ velocity curves were analyzed for peak velocity and time to
+ peak velocity in the radial, circumferential, and
+ longitudinal directions, as well as for torsion rate and
+ longitudinal strain rate. Mixed-effects models with a
+ random intercept for volunteers were used to test
+ differences among the three ventricular sections and the
+ transmural, endocardial, and epicardial parameters.TPM
+ enabled reproducible assessment of myocardial velocity with
+ small intra- and interobserver variability values. Systolic
+ peak radial velocity was lowest at the apical level (P <
+ .001); diastolic peak radial velocity was similar at all
+ three myocardial levels (P = .73). As viewed from the apex,
+ a relative counterclockwise rotation during systole was
+ followed by a relative clockwise rotation of the apex
+ against the base. Diastolic and systolic peak longitudinal
+ velocity values decreased from base to apex (P < .001). A
+ gradient between endocardium and epicardium was observed
+ for radial velocity values, with greater endocardial
+ velocity values (P < .001).TPM is a reproducible
+ comprehensive modality for assessment of regional wall
+ motion, and intra- and interobserver variability values are
+ low.},
+ DOI = {10.1148/radiol.2383041992},
+ Institution = {University of Oxford Centre for Clinical Magnetic
+ Resonance Research, Department of Cardiovascular Medicine,
+ John Radcliffe Hospital, England.
+ steffen.petersen@cardiov.ox.ac.uk},
+ Keywords = {Adult; Diastole, physiology; Female; Humans; Imaging,
+ Three-Dimensional; Magnetic Resonance Imaging, Cine; Male;
+ Myocardial Contraction, physiology; Observer Variation;
+ Prospective Studies; Reference Values; Reproducibility of
+ Results; Systole, physiology},
+ Language = {eng},
+ medline-pst = {ppublish},
+ owner = {stoeckc},
+ pii = {2383041992},
+ pmid = {16424246},
+ timestamp = {2015.07.24},
+ URL = {http://dx.doi.org/10.1148/radiol.2383041992}
+}
+
+@Article{ peterson-88,
+ Annote = {mhd, existence, finite element},
+ Author = {Peterson, J. S.},
+ code = {mhd9},
+ Journal = {Num. Meth. Partial Diff. Eq.},
+ Pages = {57-68},
+ Title = {On the finite element approximation of incompressible
+ flows of an electrically conducting fluid},
+ Volume = {4},
+ Year = {1988}
+}
+
+###Article{ peterson-88,
+ Annote = {mhd, existence, finite element},
+ Author = {Peterson, J. S.},
+ code = {mhd9},
+ Journal = {Num. Meth. Partial Diff. Eq.},
+ Pages = {57-68},
+ Title = {On the finite element approximation of incompressible
+ flows of an electrically conducting fluid},
+ Volume = {4},
+ Year = {1988}
+}
+
+@Misc{ petsc-web-page,
+ Author = {Satish Balay and Shrirang Abhyankar and Mark~F. Adams and
+ Jed Brown and Peter Brune and Kris Buschelman and Lisandro
+ Dalcin and Victor Eijkhout and William~D. Gropp and Dinesh
+ Kaushik and Matthew~G. Knepley and Lois Curfman McInnes and
+ Karl Rupp and Barry~F. Smith and Stefano Zampini and Hong
+ Zhang and Hong Zhang},
+ Title = {{PETS}c {W}eb page},
+ URL = {http://www.mcs.anl.gov/petsc},
+ HowPublished = {\url{http://www.mcs.anl.gov/petsc}},
+ Year = {2016}
+}
+
+@Article{ pfaller2018ipod,
+ Title = {Parametric model order reduction using POD for coupled
+ nonlinear cardiac mechanics},
+ Author = {Pfaller, Martin R and Lang, Johannes and Varona, Maria
+ Cruz and Biehler, Jonas and Bertoglio, Crist{\'o}bal and
+ Wall, Wolfgang A},
+ Note = {In proceedings of the 6th European Conference on
+ Computational Mechanics (ECCM 6)},
+ Year = {2018}
+}
+
+@Article{ pfeffer90circ,
+ Title = {Ventricular remodeling after myocardial infarction.
+ Experimental observations and clinical implications.},
+ Author = {Pfeffer, M A and Braunwald, E},
+ Journal = {Circulation},
+ Year = {1990},
+ Number = {4},
+ Pages = {1161-72},
+ Volume = {81},
+ Abstract = {An acute myocardial infarction, particularly one that is
+ large and transmural, can produce alterations in the
+ topography of both the infarcted and noninfarcted regions
+ of the ventricle. This remodeling can importantly affect
+ the function of the ventricle and the prognosis for
+ survival. In the early period, infarct expansion has been
+ recognized by echocardiography as a lengthening of the
+ noncontractile region. The noninfarcted region also
+ undergoes an important lengthening that is consistent with
+ a secondary volume-overload hypertrophy and that can be
+ progressive. The extent of ventricular enlargement after
+ infarction is related to the magnitude of the initial
+ damage to the myocardium and, although an increase in
+ cavity size tends to restore stroke volume despite a
+ persistently depressed ejection fraction, ventricular
+ dilation has been associated with a reduction in survival.
+ The process of ventricular enlargement can be influenced by
+ three interdependent factors, that is, infarct size,
+ infarct healing, and ventricular wall stresses. A most
+ effective way to prevent or minimize the increase in
+ ventricular size after infarction and the consequent
+ adverse effect on prognosis is to limit the initial insult.
+ Acute reperfusion therapy has been consistently shown to
+ result in a reduction in ventricular volume. The
+ reestablishment of blood flow to the infarcted region, even
+ beyond the time frame for myocyte salvage, has beneficial
+ effects in attenuating ventricular enlargement. The process
+ of scarification can be interfered with during the acute
+ infarct period by the administration of
+ glucocorticosteroids and nonsteroidal antiinflammatory
+ agents, which result in thinner infarcts and greater
+ degrees of infarct expansion. Modification of distending or
+ deforming forces can importantly influence ventricular
+ enlargement. Even short-term augmentations in afterload
+ have deleterious long-term effects on ventricular
+ topography. Conversely, judicious use of nitroglycerin
+ seems to be associated with an attenuation of infarct
+ expansion and long-term improvement in clinical outcome.
+ Long-term therapy with an angiotensin converting enzyme
+ inhibitor can favorably alter the loading conditions on the
+ left ventricle and reduce progressive ventricular
+ enlargement as demonstrated in both experimental and
+ clinical studies. With the former therapy, this attenuation
+ of ventricular enlargement was associated with a
+ prolongation in survival. The long-term clinical
+ consequences of long-term angiotensin converting enzyme
+ inhibitor therapy after myocardial infarction is currently
+ being evaluated. Although studies directed at attenuating
+ left ventricular remodeling after infarction are in the
+ early stages, it does seem that this will be an important
+ area in which future research might improve long-term
+ outcome after infarction.},
+ DOI = {10.1161/01.CIR.81.4.1161},
+ EPrint = {http://circ.ahajournals.org/content/81/4/1161.full.pdf+html},
+ File = {pfeffer90.pdf:pfeffer90.pdf:PDF},
+ timestamp = {2015/09/10},
+ URL = {http://circ.ahajournals.org/content/81/4/1161.abstract}
+}
+
+@Article{ pham-verron-gourdeau-98,
+ Author = {Pham, D.-T. and Verron, J. and Gourdeau, L.},
+ date-added = {2009-03-10 11:40:28 -0700},
+ date-modified = {2009-03-10 12:25:39 -0700},
+ DOI = {DOI: 10.1016/S1251-8050(97)86815-2},
+ ISSN = {1251-8050},
+ Journal = {Comptes Rendus de l'Acad{\'e}mie des Sciences - Series IIA
+ },
+ Number = {4},
+ Pages = {255--260},
+ Title = {Filtres de {K}alman singuliers {\'e}volutifs pour
+ l'assimilation de donn{\'e}es en oc{\'e}anographie},
+ Volume = {326},
+ Year = {1998}
+}
+
+###Article{ pham-verron-gourdeau-98,
+ Author = {Pham, D.-T. and Verron, J. and Gourdeau, L.},
+ date-added = {2009-03-10 11:40:28 -0700},
+ date-modified = {2009-03-10 12:25:39 -0700},
+ DOI = {DOI: 10.1016/S1251-8050(97)86815-2},
+ ISSN = {1251-8050},
+ Journal = {Comptes Rendus de l'Acad{\'e}mie des Sciences - Series IIA
+ },
+ Number = {4},
+ Pages = {255--260},
+ Title = {Filtres de {K}alman singuliers {\'e}volutifs pour
+ l'assimilation de donn{\'e}es en oc{\'e}anographie},
+ Volume = {326},
+ Year = {1998},
+ bdsk-url-1 = {http://www.sciencedirect.com/science/article/B6VJ3-3WSVDC0-5/2/19eded8bacefb96524950071ecbf484d},
+ bdsk-url-2 = {http://dx.doi.org/10.1016/S1251-8050(97)86815-2}
+}
+
+@Article{ pibarot-2000,
+ Author = {Garcia, D. and Pibarot, P. and Dumesnil, J. and Sakr, F.
+ and Durand, L.-G.},
+ Journal = {Circulation},
+ Pages = {765--771},
+ Title = {Assessment of Aortic Valve Stenosis Severity, A new index
+ based on the energy loss concept},
+ Volume = {101},
+ Year = {2000}
+}
+
+###Article{ pibarot-2000,
+ Author = {Garcia, D. and Pibarot, P. and Dumesnil, J. and Sakr, F.
+ and Durand, L.-G.},
+ Journal = {Circulation},
+ Pages = {765--771},
+ Title = {Assessment of Aortic Valve Stenosis Severity, A new index
+ based on the energy loss concept},
+ Volume = {101},
+ Year = {2000}
+}
+
+@Article{ pieske2004ehjs,
+ Title = {Reverse remodeling in heart failure {\textendash} fact or
+ fiction?},
+ Author = {Pieske, Burkert},
+ Journal = {European Heart Journal Supplements},
+ Year = {2004},
+ Number = {suppl D},
+ Pages = {D66--D78},
+ Volume = {6},
+ Abstract = {Maladaptive remodeling is associated with impaired
+ prognosis in heart failure, and prevention of remodeling is
+ an established therapeutic target. However, it is much less
+ clear whether remodeling may be reversed once it has
+ developed. In the last decade, anti-neuroendocrine therapy
+ with ACE inhibitors, and even more potently, beta-blockers,
+ was shown to improve surrogate markers for reverse
+ remodeling, such as ejection fraction (EF), ventricular
+ volumes, and mass. For beta-blockers, reverse molecular
+ remodeling was also shown in biopsy specimens on the
+ cellular and subcellular level. Both moderate endurance
+ training and continuous positive airway pressure (CPAP)
+ therapy in heart failure patients with sleep apnea induce
+ reverse remodeling. Cardiac resynchronization therapy
+ improves exercise capacity and quality of life in patients
+ with ventricular dyssynchrony and is clearly associated
+ with geometrical and functional reverse remodeling over
+ time. Whether this translates into improved survival
+ remains to be demonstrated. Surgical approaches for reverse
+ remodeling, such as mitral valve replacement,
+ aneurysmectomy, and volume reduction (Batista procedure)
+ have been developed, but may also be associated with high
+ perioperative mortality. Mechanical unloading of the
+ failing ventricles by left ventricular assist systems
+ (LVAD) induces well-characterized reverse remodeling on the
+ cellular and subcellular level. However, persistent
+ functional improvement in a significant subset of patients
+ that would allow weaning form the device is still under
+ debate. Novel, complementary approaches, such as gene
+ transfer or stem cell therapy are under pre-clinical and
+ clinical investigation. Taken together, reverse remodeling
+ can be induced by pharmacological and non-pharmacological
+ therapy and may serve as a surrogate parameter for
+ therapeutic success in the individual patient. Since
+ maladaptive remodeling is associated with poor prognosis,
+ identification of novel strategies to reverse this process
+ remains a promising target.},
+ DOI = {10.1016/j.ehjsup.2004.05.019},
+ File = {pieske04.pdf:pieske04.pdf:PDF},
+ ISSN = {1520-765X},
+ Publisher = {The Oxford University Press},
+ timestamp = {2015/09/11}
+}
+
+@Article{ pigny-moreau-92,
+ Author = {Pigny, S. and Moreau, R.},
+ Journal = {Eur. J. Mech., B/ Fluids},
+ Number = {1},
+ Pages = {1--20},
+ Title = {Stability of fluid interfaces carrying an electric current
+ in the presence of a magnetic field},
+ Volume = {11},
+ Year = {1992}
+}
+
+###Article{ pigny-moreau-92,
+ Author = {Pigny, S. and Moreau, R.},
+ Journal = {Eur. J. Mech., B/ Fluids},
+ Number = {1},
+ Pages = {1--20},
+ Title = {Stability of fluid interfaces carrying an electric current
+ in the presence of a magnetic field},
+ Volume = {11},
+ Year = {1992}
+}
+
+@PhdThesis{ piperno-95,
+ Author = {Piperno, S.},
+ School = {Ecole Nationale des Ponts et Chauss{\'e}es},
+ Title = {Simulation num{\'e}rique de ph{\'e}nom{\`e}nes
+ d'interaction fluide-structure},
+ Year = {1995}
+}
+
+###PhdThesis{ piperno-95,
+ Author = {Piperno, S.},
+ School = {Ecole Nationale des Ponts et Chauss{\'e}es},
+ Title = {Simulation num{\'e}rique de ph{\'e}nom{\`e}nes
+ d'interaction fluide-structure},
+ Year = {1995}
+}
+
+@Article{ piperno-97,
+ Author = {Piperno, S.},
+ code = {fsi 17},
+ fjournal = {International Journal for Numerical Methods in Fluids},
+ Journal = {Internat. J. Numer. Methods Fluids},
+ Number = {10},
+ Pages = {1207--1226},
+ Title = {Explicit/implicit fluid/structure staggered procedures
+ with a structural predictor and fluid subcycling for 2{D}
+ inviscid aeroelastic simulations},
+ Volume = {25},
+ Year = {1997}
+}
+
+###Article{ piperno-97,
+ Author = {Piperno, S.},
+ code = {fsi 17},
+ fjournal = {International Journal for Numerical Methods in Fluids},
+ Journal = {Internat. J. Numer. Methods Fluids},
+ Number = {10},
+ Pages = {1207--1226},
+ Title = {Explicit/implicit fluid/structure staggered procedures
+ with a structural predictor and fluid subcycling for 2{D}
+ inviscid aeroelastic simulations},
+ Volume = {25},
+ Year = {1997}
+}
+
+@Article{ piperno-farhat-larrouturou-95,
+ Author = {Piperno, S. and Farhat, C. and Larrouturou, B.},
+ code = {fsi 18},
+ Journal = {Comp. Meth. Appl. Mech. Engrg.},
+ Pages = {79-112},
+ Title = {Partitioned procedures for the transient solution of
+ coupled aeroelastic problems. {Part I}: {M}odel problem,
+ theory and two-dimensional application},
+ Volume = {124},
+ Year = {1995}
+}
+
+###Article{ piperno-farhat-larrouturou-95,
+ Author = {Piperno, S. and Farhat, C. and Larrouturou, B.},
+ code = {fsi 18},
+ Journal = {Comp. Meth. Appl. Mech. Engrg.},
+ Pages = {79-112},
+ Title = {Partitioned procedures for the transient solution of
+ coupled aeroelastic problems. {Part I}: {M}odel problem,
+ theory and two-dimensional application},
+ Volume = {124},
+ Year = {1995}
+}
+
+@Article{ pirola_choice_2017,
+ Title = {On the Choice of Outlet Boundary Conditions for
+ Patient-Specific Analysis of Aortic Flow Using
+ Computational Fluid Dynamics},
+ Volume = {60},
+ JournalTitle = {Journal of Biomechanics},
+ Year = {2017},
+ Pages = {15--21},
+ Author = {Pirola, S. and Cheng, Z. and Jarral, O. A. and O'Regan, D.
+ P. and Pepper, J. R. and Athanasiou, T. and Xu, X. Y.}
+}
+
+@Book{ pironneau,
+ Author = {Pironneau, O.},
+ Publisher = {Wiley},
+ Title = {Finite element methods for fluids},
+ Year = {1989}
+}
+
+###Book{ pironneau,
+ Author = {Pironneau, O.},
+ Publisher = {Wiley},
+ Title = {Finite element methods for fluids},
+ Year = {1989}
+}
+
+@Article{ ploegstra2018followup,
+ Title = "Pulmonary arterial stiffness indices assessed by
+ intravascular ultrasound in children with early pulmonary
+ vascular disease: Prediction of advanced disease and
+ mortality during 20-year follow-up",
+ Abstract = "Aims Prognosis in children with pulmonary vascular disease
+ (PVD) is closely linked to right ventricular (RV) failure
+ due to increased RV-afterload. Pulmonary arterial (PA)
+ stiffening is known to occur early in the course of PVD and
+ constitutes a main component of RV-afterload. This study
+ aimed to evaluate the clinical value of PA-stiffness in
+ children with PVD by determining its association with
+ advanced pulmonary arterial hypertension (PAH) and
+ mortality at long-term follow-up.Methods and results
+ Forty-one children with various stages of arterial PVD,
+ defined as mean PA-pressure >= 20 mmHg and/or
+ pulmonary-to-systemic flow-ratio >= 1.2, and mean pulmonary
+ capillary wedge pressureConclusion In children with PVD,
+ PA-stiffness indices assessed by IVUS predict advanced PAH
+ and mortality at long term follow-up. Especially in
+ patients with favourable haemodynamics, assessment of
+ intrinsic PA-stiffness may enhance the prognostication of
+ disease progression and survival.",
+ Keywords = "pulmonary vascular disease, pulmonary arterial
+ hypertension, congenital heart disease, outcome,
+ paediatrics, stiffness, CONGENITAL HEART-DISEASE,
+ HYPERTENSION, DIAGNOSIS, THERAPY, DISTENSIBILITY,
+ GUIDELINES, RESISTANCE, DEFECTS, CLOSURE, REPAIR",
+ Author = "Mark-Jan Ploegstra and Brokelman, {Jody G. M.} and
+ Roos-Hesselink, {Jolien W.} and Douwes, {Johannes M.} and
+ {van Osch-Gevers}, {Lenny M.} and Hoendermis, {Elke S.} and
+ {van den Bosch}, {Annemien E.} and Maarten Witsenburg and
+ Beatrijs Bartelds and Hillege, {Hans L.} and Berger, {Rolf
+ M. F.}",
+ Year = "2018",
+ Month = "2",
+ day = "1",
+ DOI = "10.1093/ehjci/jex015",
+ Language = "English",
+ Volume = "19",
+ Pages = "216--224",
+ Journal = "European heart journal-Cardiovascular imaging",
+ ISSN = "2047-2404",
+ Publisher = "Oxford University Press",
+ Number = "2"
+}
+
+@Article{ pm-dc-plt-09,
+ Author = {Moireau, P. and Chapelle, D. and Le Tallec, P.},
+ Title = {Filtering for distributed mechanical systems using
+ position measurements: Perspectives in medical imaging},
+ Journal = {Inverse Problems},
+ Volume = 25,
+ Number = 3,
+ Pages = {035010 (25pp)},
+ Note = {doi:10.1088/0266-5611/25/3/035010},
+ Year = 2009
+}
+
+###Article{ pm-dc-plt-09,
+ Author = {Moireau, P. and Chapelle, D. and Le Tallec, P.},
+ Title = {Filtering for distributed mechanical systems using
+ position measurements: Perspectives in medical imaging},
+ Journal = {Inverse Problems},
+ Volume = 25,
+ Number = 3,
+ Pages = {035010 (25pp)},
+ Note = {doi:10.1088/0266-5611/25/3/035010},
+ Year = 2009
+}
+
+@Article{ pontrelli-00,
+ Author = {Pontrelli, G.},
+ Journal = {Math. Models Methods Appl. Sci.},
+ Number = {2},
+ Pages = {187--202},
+ Title = {Blood flow through a circular pipe with an impulsive
+ pressure gradient},
+ Volume = {10},
+ Year = {2000}
+}
+
+###Article{ pontrelli-00,
+ Author = {Pontrelli, G.},
+ Journal = {Math. Models Methods Appl. Sci.},
+ Number = {2},
+ Pages = {187--202},
+ Title = {Blood flow through a circular pipe with an impulsive
+ pressure gradient},
+ Volume = {10},
+ Year = {2000}
+}
+
+@Book{ pope_turbulent_2000,
+ Title = {Turbulent Flows},
+ Author = {Pope, S. B.},
+ Year = {2000},
+ Publisher = {{Cambridge University Press}},
+ Address = {{Cambridge ; New York}},
+ ISBN = {978-0-521-59125-6 978-0-521-59886-6},
+ lccn = {QA913 .P64 2000}
+}
+
+###Book{ pope_turbulent_2000,
+ Location = {{Cambridge ; New York}},
+ Title = {Turbulent Flows},
+ ISBN = {978-0-521-59125-6 978-0-521-59886-6},
+ PageTotal = {771},
+ Publisher = {{Cambridge University Press}},
+ Date = {2000},
+ Author = {Pope, S. B.}
+}
+
+@Article{ poprawski-etal-09,
+ Author = {Poprawski, K. and Michalski, M. and Lawniczak, M. and
+ Lacka, K.},
+ Title = {Cardiovascular abnormalities in patients with Turner
+ syndrome according to karyotype: own experience and
+ literature review},
+ Journal = {Pol Arch Med Wewn},
+ Volume = {119},
+ Year = {2009},
+ Number = {7-8},
+ Pages = {453-60},
+ pubmedid = {19776685},
+ ISSN = {0032-3772}
+}
+
+###Article{ poprawski-etal-09,
+ Author = {Poprawski, K. and Michalski, M. and Lawniczak, M. and
+ Lacka, K.},
+ Title = {Cardiovascular abnormalities in patients with Turner
+ syndrome according to karyotype: own experience and
+ literature review},
+ Journal = {Pol Arch Med Wewn},
+ Volume = {119},
+ Year = {2009},
+ Number = {7-8},
+ Pages = {453-60},
+ URL = {http://www.biomedsearch.com/nih/Cardiovascular-abnormalities-in-patients-with/19776685.html},
+ pubmedid = {19776685},
+ ISSN = {0032-3772}
+}
+
+@Article{ potanin-93,
+ Annote = {blood, aggregation, shear flow},
+ Author = {Potanin, A.A.},
+ code = {cel1},
+ Journal = {J. Colloid Interface Sci.},
+ Pages = {399-410},
+ Title = {On the computer simulation of the deformation and breakup
+ of colloidal aggregates in shear flow},
+ Volume = {157},
+ Year = {1993}
+}
+
+###Article{ potanin-93,
+ Annote = {blood, aggregation, shear flow},
+ Author = {Potanin, A.A.},
+ code = {cel1},
+ Journal = {J. Colloid Interface Sci.},
+ Pages = {399-410},
+ Title = {On the computer simulation of the deformation and breakup
+ of colloidal aggregates in shear flow},
+ Volume = {157},
+ Year = {1993}
+}
+
+@Article{ potanin-uriev-91,
+ Annote = {blood, aggregation, shear flow},
+ Author = {Potanin, A.A. and Uriev, N.B.},
+ code = {cel2},
+ Journal = {J. Colloid. interface sci.},
+ Number = {2},
+ Pages = {385-395},
+ Title = {Microrheological models of aggregated suspensions in shear
+ flow},
+ Volume = {142},
+ Year = {1990}
+}
+
+###Article{ potanin-uriev-91,
+ Annote = {blood, aggregation, shear flow},
+ Author = {Potanin, A.A. and Uriev, N.B.},
+ code = {cel2},
+ Journal = {J. Colloid. interface sci.},
+ Number = {2},
+ Pages = {385-395},
+ Title = {Microrheological models of aggregated suspensions in shear
+ flow},
+ Volume = {142},
+ Year = {1990}
+}
+
+@Article{ potocnik-laroche-01,
+ Author = {Potocnik, V., Laroche, F.},
+ Journal = {Light Metal},
+ Pages = {419-425},
+ Title = {Comparison of measured and calculated metal pad velocities
+ for different prebake cell designs},
+ Year = {2001}
+}
+
+###Article{ potocnik-laroche-01,
+ Author = {Potocnik, V., Laroche, F.},
+ Journal = {Light Metal},
+ Pages = {419-425},
+ Title = {Comparison of measured and calculated metal pad velocities
+ for different prebake cell designs},
+ Year = {2001}
+}
+
+@Article{ potse-etal-06,
+ Author = {Potse, M. and Dube, B. and Richer, J. and Vinet, A. and
+ Gulrajani, R.M.},
+ Journal = {IEEE Transactions on Biomedical Engineering},
+ Volume = {53},
+ Issue = {},
+ Pages = {2425â-2435},
+ Title = {A comparison of monodomain and bidomain reaction-diffusion
+ models for action potential propagation in the human
+ heart},
+ Year = {2006}
+}
+
+@PhdThesis{ poussineau-07,
+ Author = {Poussineau, Nicole},
+ Title = {R\'eduction variationnelle d'un couplage fluide-structure.
+ Application \`a l'h\'emodynamique.},
+ School = {Universit\'e Pierre et Marie Curie, Paris 6},
+ Year = 2007
+}
+
+###PhdThesis{ poussineau-07,
+ Author = {Poussineau, Nicole},
+ Title = {R\'eduction variationnelle d'un couplage fluide-structure.
+ Application \`a l'h\'emodynamique.},
+ School = {Universit\'e Pierre et Marie Curie, Paris 6},
+ Year = 2007
+}
+
+@Article{ presbitero1987long,
+ Title = {Long term results (15-30 years) of surgical repair of
+ aortic coarctation.},
+ Author = {Presbitero, P and Demarie, D and Villani, M and Perinetto,
+ E Actis and Riva, G and Orzan, F and Bobbio, M and Morea, M
+ and Brusca, A},
+ Journal = {British heart journal},
+ Volume = {57},
+ Number = {5},
+ Pages = {462--467},
+ Year = {1987},
+ Publisher = {BMJ Publishing Group Ltd and British Cardiovascular
+ Society}
+}
+
+###Article{ presbitero1987long,
+ Title = {Long term results (15-30 years) of surgical repair of
+ aortic coarctation.},
+ Author = {Presbitero, P and Demarie, D and Villani, M and Perinetto,
+ E Actis and Riva, G and Orzan, F and Bobbio, M and Morea, M
+ and Brusca, A},
+ Journal = {British heart journal},
+ Volume = {57},
+ Number = {5},
+ Pages = {462--467},
+ Year = {1987},
+ Publisher = {BMJ Publishing Group Ltd and British Cardiovascular
+ Society}
+}
+
+@Book{ preumont-02,
+ Author = {Preumont, A.},
+ date-added = {2009-03-10 12:19:26 -0700},
+ date-modified = {2009-03-10 12:19:35 -0700},
+ Edition = {2nd},
+ Month = {February},
+ Publisher = {Kluwer Academic Publishers},
+ Title = {Vibration Control of Active Structures, An Introduction},
+ Year = {2002}
+}
+
+###Book{ preumont-02,
+ Author = {Preumont, A.},
+ date-added = {2009-03-10 12:19:26 -0700},
+ date-modified = {2009-03-10 12:19:35 -0700},
+ Edition = {2nd},
+ Month = {February},
+ Publisher = {Kluwer Academic Publishers},
+ Title = {Vibration Control of Active Structures, An Introduction},
+ Year = {2002}
+}
+
+@Article{ pries2008review,
+ Title = {A review of methods for assessment of coronary
+ microvascular disease in both clinical and experimental
+ settings},
+ Author = {Pries, Axel R and Habazettl, Helmut and Ambrosio, Giuseppe
+ and Hansen, Peter Riis and Kaski, Juan Carlos and
+ Sch{\"a}chinger, Volker and Tillmanns, Harald and Vassalli,
+ Giuseppe and Tritto, Isabella and Weis, Michael and others},
+ Journal = {Cardiovascular research},
+ Year = {2008},
+ Publisher = {The Oxford University Press}
+}
+
+@MastersThesis{ proudfoot-09,
+ Author = {Proudfoot, N.},
+ School = {McMaster University},
+ Title = {The acute effects of moderate intensity exercise on
+ vascular stiffness in children with repaired coarctation of
+ the aorta},
+ Year = {2009}
+}
+
+###MastersThesis{ proudfoot-09,
+ Author = {Proudfoot, N.},
+ School = {McMaster University},
+ Title = {The acute effects of moderate intensity exercise on
+ vascular stiffness in children with repaired coarctation of
+ the aorta},
+ Year = {2009}
+}
+
+@Article{ quaini-quarteroni-07,
+ Author = {Quaini, A. and Quarteroni, A.},
+ Journal = {Math. Models Methods Appl. Sci.},
+ Number = {6},
+ Pages = {957--983},
+ Title = {A semi-implicit approach for fluid-structure interaction
+ based on an algebraic fractional step method},
+ Volume = {17},
+ Year = {2007}
+}
+
+###Article{ quaini-quarteroni-07,
+ Author = {Quaini, A. and Quarteroni, A.},
+ Journal = {Math. Models Methods Appl. Sci.},
+ Number = {6},
+ Pages = {957--983},
+ Title = {A semi-implicit approach for fluid-structure interaction
+ based on an algebraic fractional step method},
+ Volume = {17},
+ Year = {2007}
+}
+
+@InCollection{ quartapelle-muzzio-88,
+ Author = {Quartapelle, L. and Muzzio, A.},
+ BookTitle = {Computational Fluid Dynamics},
+ Editor = {de Vahl Davis, G. and Fletcher, C.},
+ Pages = {609-619},
+ Publisher = {{Elsevier Science Publishers, (North-Holland)}},
+ Title = {Decoupled solution of a vector {Poisson} equations with
+ boundary condition coupling},
+ Year = {1988}
+}
+
+###InCollection{ quartapelle-muzzio-88,
+ Author = {Quartapelle, L. and Muzzio, A.},
+ BookTitle = {Computational Fluid Dynamics},
+ Editor = {de Vahl Davis, G. and Fletcher, C.},
+ Pages = {609-619},
+ Publisher = {{Elsevier Science Publishers, (North-Holland)}},
+ Title = {Decoupled solution of a vector {Poisson} equations with
+ boundary condition coupling},
+ Year = {1988}
+}
+
+@Article{ quarteroni-saleri-veneziani-00,
+ Author = {Quarteroni, A. and Saleri, F. and Veneziani, A.},
+ Journal = {Comp. Methods in Appl. Mech. Engng.},
+ Number = {1-3},
+ Pages = {505-526},
+ Title = {Factorization methods for the numerical approximation of
+ the {Navier-Stokes} equations},
+ Volume = {188},
+ Year = {2000}
+}
+
+###Article{ quarteroni-saleri-veneziani-00,
+ Author = {Quarteroni, A. and Saleri, F. and Veneziani, A.},
+ Journal = {Comp. Methods in Appl. Mech. Engng.},
+ Number = {1-3},
+ Pages = {505-526},
+ Title = {Factorization methods for the numerical approximation of
+ the {Navier-Stokes} equations},
+ Volume = {188},
+ Year = {2000}
+}
+
+@Article{ quarteroni-saleri-veneziani-99,
+ Author = {Quarteroni, A. and Saleri, F. and Veneziani, A.},
+ Journal = { J. Math. Pures Appl.},
+ Number = {5},
+ Pages = {473-503},
+ Title = {Analysis of the {Yosida} method for the incompressible
+ {Navier-Stokes} equations},
+ Volume = {78},
+ Year = {1999}
+}
+
+###Article{ quarteroni-saleri-veneziani-99,
+ Author = {Quarteroni, A. and Saleri, F. and Veneziani, A.},
+ Journal = { J. Math. Pures Appl.},
+ Number = {5},
+ Pages = {473-503},
+ Title = {Analysis of the {Yosida} method for the incompressible
+ {Navier-Stokes} equations},
+ Volume = {78},
+ Year = {1999}
+}
+
+@Article{ quarteroni-tuveri-veneziani-00,
+ Annote = {hemodynamics},
+ Author = {Quarteroni, A. and Tuveri, M. and Veneziani, A.},
+ code = {hemo},
+ Journal = {Comp. Vis. Science},
+ Pages = {163-197},
+ Title = {Computational {V}ascular {F}luid {D}ynamics: {P}roblems,
+ {M}odels and {M}ethods},
+ Volume = {2},
+ Year = {2000}
+}
+
+###Article{ quarteroni-tuveri-veneziani-00,
+ Annote = {hemodynamics},
+ Author = {Quarteroni, A. and Tuveri, M. and Veneziani, A.},
+ code = {hemo},
+ Journal = {Comp. Vis. Science},
+ Pages = {163-197},
+ Title = {Computational {V}ascular {F}luid {D}ynamics: {P}roblems,
+ {M}odels and {M}ethods},
+ Volume = {2},
+ Year = {2000}
+}
+
+@Book{ quarteroni-valli-97,
+ Author = {Quarteroni, A. and Valli, A.},
+ Publisher = {Springer},
+ Title = {Numerical Approximation of Partial Differential
+ equations},
+ Year = {1997}
+}
+
+###Book{ quarteroni-valli-97,
+ Author = {Quarteroni, A. and Valli, A.},
+ Publisher = {Springer},
+ Title = {Numerical Approximation of Partial Differential
+ equations},
+ Year = {1997}
+}
+
+@Book{ quarteroni-valli-99,
+ Author = {Quarteroni, A. and Valli, A.},
+ Note = {Oxford Science Publications},
+ Publisher = {The Clarendon Press Oxford University Press},
+ Series = {Numerical Mathematics and Scientific Computation},
+ Title = {Domain decomposition methods for partial differential
+ equations},
+ Year = {1999}
+}
+
+###Book{ quarteroni-valli-99,
+ Author = {Quarteroni, A. and Valli, A.},
+ Note = {Oxford Science Publications},
+ Publisher = {The Clarendon Press Oxford University Press},
+ Series = {Numerical Mathematics and Scientific Computation},
+ Title = {Domain decomposition methods for partial differential
+ equations},
+ Year = {1999}
+}
+
+@Article{ quarteroni-veneziani-zunino,
+ Author = {Quarteroni, A. and Veneziani, A. and Zunino, P.},
+ Journal = {SIAM-JSSC},
+ Note = {(submitted)},
+ Title = {Analysis of a Domain Decomposition Method for Blood Solute
+ Dynamics},
+ Year = {2000}
+}
+
+###Article{ quarteroni-veneziani-zunino,
+ Author = {Quarteroni, A. and Veneziani, A. and Zunino, P.},
+ Journal = {SIAM-JSSC},
+ Note = {(submitted)},
+ Title = {Analysis of a Domain Decomposition Method for Blood Solute
+ Dynamics},
+ Year = {2000}
+}
+
+@Article{ quarteroni_manzoni_vergara_2017,
+ Title = {The cardiovascular system: Mathematical modelling,
+ numerical algorithms and clinical applications},
+ Volume = {26},
+ DOI = {10.1017/S0962492917000046},
+ Journal = {Acta Numerica},
+ Publisher = {Cambridge University Press},
+ Author = {Quarteroni, A. and Manzoni, A. and Vergara, C.},
+ Year = {2017},
+ Pages = {365?590}
+}
+
+@InProceedings{ raback-ruokalainen-lyly-jarvinen-01,
+ Author = {R\.aback, P. and Ruokolainen, J. and Lyly, M. and
+ J{\"a}rvinen, E.},
+ BookTitle = {ECCOMAS Computational Fluid Dynamics Conference, Swansea,
+ UK},
+ Title = {Fluid-structure interaction boundary conditions by
+ artificial compressibility},
+ Year = {2001}
+}
+
+###InProceedings{ raback-ruokalainen-lyly-jarvinen-01,
+ Author = {R\.aback, P. and Ruokolainen, J. and Lyly, M. and
+ J{\"a}rvinen, E.},
+ BookTitle = {ECCOMAS Computational Fluid Dynamics Conference, Swansea,
+ UK},
+ Title = {Fluid-structure interaction boundary conditions by
+ artificial compressibility},
+ Year = {2001}
+}
+
+@Article{ rabby_pulsatile_2013,
+ langid = {english},
+ Title = {Pulsatile {{Non}}-{{Newtonian Blood Flow}} through a
+ {{Model}} of {{Arterial Stenosis}}},
+ Volume = {56},
+ ISSN = {18777058},
+ URL = {https://linkinghub.elsevier.com/retrieve/pii/S1877705813004657},
+ DOI = {10.1016/j.proeng.2013.03.111},
+ JournalTitle = {Procedia Engineering},
+ URLDate = {2019-02-13},
+ Year = {2013},
+ Pages = {225-231},
+ Author = {Rabby, Mir Golam and Razzak, Abdur and Molla, Md. Mamun}
+}
+
+@Article{ rajagopalan-tien-76,
+ Author = {Rajagopalan, R. and Tien, C.},
+ code = {por26},
+ Journal = {AIChE J.},
+ Number = {3},
+ Pages = {523-533},
+ Title = { Trajectory analysis of deep-bed filtration with the
+ sphere-in-cell porous media model},
+ Volume = {22},
+ Year = {1976}
+}
+
+###Article{ rajagopalan-tien-76,
+ Author = {Rajagopalan, R. and Tien, C.},
+ code = {por26},
+ Journal = {AIChE J.},
+ Number = {3},
+ Pages = {523-533},
+ Title = { Trajectory analysis of deep-bed filtration with the
+ sphere-in-cell porous media model},
+ Volume = {22},
+ Year = {1976}
+}
+
+@InCollection{ rannacher1992chorin,
+ Title = {On Chorin's projection method for the incompressible
+ Navier-Stokes equations},
+ Author = {Rannacher, Rolf},
+ BookTitle = {The Navier-Stokes equations IIâtheory and numerical
+ methods},
+ Pages = {167--183},
+ Year = {1992},
+ Publisher = {Springer}
+}
+
+@Article{ rannacher2001optimal,
+ Title = {An optimal control approach to error estimation and mesh
+ adaptation in finite element methods},
+ Author = {Rannacher, Rolf and Becker, R},
+ Journal = {Acta Numerica},
+ Volume = {10},
+ Number = {1},
+ Pages = {102},
+ Year = {2001}
+}
+
+@Article{ rannacher383adaptive,
+ Title = {Adaptive finite element methods in flow computations},
+ Author = {Rannacher, Rolf},
+ Journal = {Recent Advances in Adaptive Computation. Contemporary
+ Mathematics},
+ Volume = {383},
+ Pages = {183--176}
+}
+
+@Article{ rappaz-touzani-91,
+ Author = {Rappaz, J. and Touzani, R.},
+ Journal = {Eur. Jour. Mech., B/Fluids},
+ Number = {5},
+ Pages = {451-453},
+ Title = {Modelling of a two-dimensional magnetohydrodynamic
+ problem},
+ Volume = {10},
+ Year = {1991}
+}
+
+###Article{ rappaz-touzani-91,
+ Author = {Rappaz, J. and Touzani, R.},
+ Journal = {Eur. Jour. Mech., B/Fluids},
+ Number = {5},
+ Pages = {451-453},
+ Title = {Modelling of a two-dimensional magnetohydrodynamic
+ problem},
+ Volume = {10},
+ Year = {1991}
+}
+
+@Article{ rappaz-touzani-91b,
+ Annote = {mhd, existence},
+ Author = {Rappaz, J. and Touzani, R.},
+ code = {mhd11},
+ Journal = {Mod{\'e}lisation math{\'e}matique et Analyse num{\'e}rique},
+ Number = {2},
+ Pages = {347-364},
+ Title = {On a two-dimensional magnetohydrodynamic problem. {I)}
+ Modelling and analysis},
+ Volume = {26},
+ Year = {1991}
+}
+
+###Article{ rappaz-touzani-91b,
+ Annote = {mhd, existence},
+ Author = {Rappaz, J. and Touzani, R.},
+ code = {mhd11},
+ Journal = {Mod{\'e}lisation math{\'e}matique et Analyse num{\'e}rique},
+ Number = {2},
+ Pages = {347-364},
+ Title = {On a two-dimensional magnetohydrodynamic problem. {I)}
+ Modelling and analysis},
+ Volume = {26},
+ Year = {1991}
+}
+
+@Article{ rappaz-touzani-95,
+ Annote = {mhd, finite element},
+ Author = {Rappaz, J. and Touzani, R.},
+ code = {mhd12},
+ Journal = {Mod{\'e}lisation math{\'e}matique et Analyse num{\'e}rique},
+ Number = {2},
+ Pages = {215-235},
+ Title = {On a two-dimensional magnetohydrodynamic problem. {II)}
+ Numerical analysis},
+ Volume = {30},
+ Year = {1996}
+}
+
+###Article{ rappaz-touzani-95,
+ Annote = {mhd, finite element},
+ Author = {Rappaz, J. and Touzani, R.},
+ code = {mhd12},
+ Journal = {Mod{\'e}lisation math{\'e}matique et Analyse num{\'e}rique},
+ Number = {2},
+ Pages = {215-235},
+ Title = {On a two-dimensional magnetohydrodynamic problem. {II)}
+ Numerical analysis},
+ Volume = {30},
+ Year = {1996}
+}
+
+@Article{ rasmussen-hassager-saasen-98,
+ Author = {Rasmussen, H.K. and Hassager, O. and Saasen, A.},
+ code = {mob7},
+ Journal = {Int. Jour. Num. Meth. Fluids},
+ Pages = {859-881},
+ Title = {Viscous flow with large fluid-fluid interface
+ displacement},
+ Volume = {28},
+ Year = {1998}
+}
+
+###Article{ rasmussen-hassager-saasen-98,
+ Author = {Rasmussen, H.K. and Hassager, O. and Saasen, A.},
+ code = {mob7},
+ Journal = {Int. Jour. Num. Meth. Fluids},
+ Pages = {859-881},
+ Title = {Viscous flow with large fluid-fluid interface
+ displacement},
+ Volume = {28},
+ Year = {1998}
+}
+
+@Article{ rausch2011jmbbm,
+ Title = {Material model of lung parenchyma based on living
+ precision-cut lung slice testing },
+ Author = {S.M.K. Rausch and C. Martin and P.B. Bornemann and S.
+ Uhlig and W.A. Wall},
+ Journal = {Journal of the Mechanical Behavior of Biomedical Materials
+ },
+ Year = {2011},
+ Number = {4},
+ Pages = {583 - 592},
+ Volume = {4},
+ Abstract = {We describe a novel constitutive model of lung parenchyma,
+ which can be used for continuum mechanics based predictive
+ simulations. To develop this model, we experimentally
+ determined the nonlinear material behavior of rat lung
+ parenchyma. This was achieved via uni-axial tension tests
+ on living precision-cut rat lung slices. The resulting
+ force?displacement curves were then used as inputs for an
+ inverse analysis. The Levenberg?Marquardt algorithm was
+ utilized to optimize the material parameters of
+ combinations and recombinations of established
+ strain?energy density functions (SEFs). Comparing the
+ best-fits of the tested \{SEFs\} we found W p a r = 4.1 kPa
+ ( I ¯ 1 ? 3 ) 2 + 20.7 kPa ( I ¯ 1 ? 3 ) 3 + 4.1 kPa ( ?
+ 2 ln J + J 2 ? 1 ) to be the optimal constitutive model.
+ This \{SEF\} consists of three summands: the first can be
+ interpreted as the contribution of the elastin fibers and
+ the ground substance, the second as the contribution of the
+ collagen fibers while the third controls the volumetric
+ change. The presented approach will help to model the
+ behavior of the pulmonary parenchyma and to quantify the
+ strains and stresses during ventilation. },
+ DOI = {http://dx.doi.org/10.1016/j.jmbbm.2011.01.006},
+ File = {rausch11.pdf:rausch11.pdf:PDF},
+ ISSN = {1751-6161},
+ Keywords = {Alveoli},
+ timestamp = {2015/09/23},
+ URL = {http://www.sciencedirect.com/science/article/pii/S1751616111000075}
+}
+
+@InCollection{ raviart1977mixed,
+ Title = {A mixed finite element method for 2-nd order elliptic
+ problems},
+ Author = {Raviart, Pierre-Arnaud and Thomas, Jean-Marie},
+ BookTitle = {Mathematical aspects of finite element methods},
+ Pages = {292--315},
+ Year = {1977},
+ Publisher = {Springer}
+}
+
+@Article{ raymond-10,
+ Author = {Raymond, Jean-Pierre},
+ date-added = {2012-02-27 13:47:31 +0000},
+ date-modified = {2012-02-27 13:52:18 +0000},
+ DOI = {10.1137/080744761},
+ Journal = {SIAM J. Control Optim.},
+ Number = {8},
+ Pages = {5398--5443},
+ Title = {Feedback stabilization of a fluid-structure model},
+ Volume = {48},
+ Year = {2010}
+}
+
+###Article{ raymond-10,
+ Author = {Raymond, Jean-Pierre},
+ date-added = {2012-02-27 13:47:31 +0000},
+ date-modified = {2012-02-27 13:52:18 +0000},
+ DOI = {10.1137/080744761},
+ Journal = {SIAM J. Control Optim.},
+ Number = {8},
+ Pages = {5398--5443},
+ Title = {Feedback stabilization of a fluid-structure model},
+ Volume = {48},
+ Year = {2010},
+ bdsk-url-1 = {http://dx.doi.org/10.1137/080744761}
+}
+
+@Book{ ref,
+ Author = "Author(s)",
+ Title = "{Title}",
+ Publisher = "Eds.",
+ Year = "year"
+}
+
+###Article{ ref,
+ Author = "Authors",
+ Title = "Title",
+ Journal = "journal",
+ Volume = "1",
+ Pages = "pp",
+ Year = "year"
+}
+
+###Book{ ref,
+ Author = "Author(s)",
+ Title = "{Title}",
+ Publisher = "Eds.",
+ Year = "year"
+}
+
+###Article{ ref,
+ Author = "Authors",
+ Title = "Title",
+ Journal = "journal",
+ Volume = "1",
+ Pages = "pp",
+ Year = "year"
+}
+
+@Article{ rehmann-welty-harvey-99,
+ Author = {Rehmann, L.L.C. and Welty, C. and Harvey, R.W.},
+ code = {por20},
+ Journal = {Water resources research},
+ Number = {7},
+ Pages = {1987-2006},
+ Title = {Stochastic analysis of virus transport in aquifers},
+ Volume = {35},
+ Year = {1999}
+}
+
+###Article{ rehmann-welty-harvey-99,
+ Author = {Rehmann, L.L.C. and Welty, C. and Harvey, R.W.},
+ code = {por20},
+ Journal = {Water resources research},
+ Number = {7},
+ Pages = {1987-2006},
+ Title = {Stochastic analysis of virus transport in aquifers},
+ Volume = {35},
+ Year = {1999}
+}
+
+@Article{ rengier_noninvasive_2014,
+ Title = {Noninvasive Pressure Difference Mapping Derived from
+ {{4D}} Flow {{MRI}} in Patients with Unrepaired and
+ Repaired Aortic Coarctation},
+ Volume = {4},
+ Number = {2},
+ JournalTitle = {Cardiovascular diagnosis and therapy},
+ Year = {2014},
+ Pages = {97},
+ Author = {Rengier, Fabian and Delles, Michael and Eichhorn, Joachim
+ and Azad, Yoo-Jin and von Tengg-Kobligk, Hendrik and
+ Ley-Zaporozhan, Julia and Dillmann, Rüdiger and Kauczor,
+ Hans-Ulrich and Unterhinninghofen, Roland and Ley,
+ Sebastian},
+ Options = {useprefix=true}
+}
+
+@Article{ rengier_noninvasive_2015,
+ Title = {Noninvasive {{4D}} Pressure Difference Mapping Derived
+ from {{4D}} Flow {{MRI}} in Patients with Repaired Aortic
+ Coarctation: Comparison with Young Healthy Volunteers},
+ Volume = {31},
+ ShortTitle = {Noninvasive {{4D}} Pressure Difference Mapping Derived
+ from {{4D}} Flow {{MRI}} in Patients with Repaired Aortic
+ Coarctation},
+ Number = {4},
+ JournalTitle = {The international journal of cardiovascular imaging},
+ Year = {2015},
+ Pages = {823--830},
+ Author = {Rengier, Fabian and Delles, Michael and Eichhorn, Joachim
+ and Azad, Yoo-Jin and von Tengg-Kobligk, Hendrik and
+ Ley-Zaporozhan, Julia and Dillmann, Rüdiger and Kauczor,
+ Hans-Ulrich and Unterhinninghofen, Roland and Ley,
+ Sebastian},
+ Options = {useprefix=true}
+}
+
+@Article{ rengier_vitro_2011,
+ Title = {In Vitro Validation of Flow Measurements in an Aortic
+ Nitinol Stent Graft by Velocity-Encoded {{MRI}}},
+ Author = {Rengier, Fabian and Delles, Michael and Weber, Tim
+ Frederik and B{\"o}ckler, Dittmar and Ley, Sebastian and
+ Kauczor, Hans-Ulrich and {von Tengg-Kobligk}, Hendrik},
+ Year = {2011},
+ Volume = {80},
+ Pages = {163--167},
+ Journal = {European journal of radiology},
+ Number = {1}
+}
+
+@Article{ reuben-shannon-90,
+ Annote = {blood, red cell, sedimentation, aggregation},
+ Author = { Reuben, A. J. and Shannon, A. G. },
+ code = {cel9},
+ Journal = {IMA J. Math. Appl. Med. Biol.},
+ Number = {3},
+ Pages = {145-156},
+ Title = {Some problems in the mathematical modelling of erythrocyte
+ sedimentation},
+ Volume = {7},
+ Year = {1990}
+}
+
+###Article{ reuben-shannon-90,
+ Annote = {blood, red cell, sedimentation, aggregation},
+ Author = { Reuben, A. J. and Shannon, A. G. },
+ code = {cel9},
+ Journal = {IMA J. Math. Appl. Med. Biol.},
+ Number = {3},
+ Pages = {145-156},
+ Title = {Some problems in the mathematical modelling of erythrocyte
+ sedimentation},
+ Volume = {7},
+ Year = {1990}
+}
+
+@Article{ reumann-reinerth-2004,
+ Author = {Reumann, M. and Reinerth, G. and Seemann, G. and Vahl,
+ C.F. and Hagl, S. and D{\"o}ssel, O.},
+ Journal = {International Congress Series},
+ Pages = {1102-1107},
+ Title = {Computer-aided electrode positioning in biventricular
+ pacing},
+ Volume = {1268},
+ Year = {2004}
+}
+
+###Article{ reumann-reinerth-2004,
+ Author = {Reumann, M. and Reinerth, G. and Seemann, G. and Vahl,
+ C.F. and Hagl, S. and D{\"o}ssel, O.},
+ Journal = {International Congress Series},
+ Pages = {1102-1107},
+ Title = {Computer-aided electrode positioning in biventricular
+ pacing},
+ Volume = {1268},
+ Year = {2004}
+}
+
+###Article{ reumann-reinerth-2004,
+ Author = {Reumann, M. and Reinerth, G. and Seemann, G. and Vahl,
+ C.F. and Hagl, S. and D{\"o}ssel, O.},
+ Journal = {International Congress Series},
+ Pages = {1102-1107},
+ Title = {Computer-aided electrode positioning in biventricular
+ pacing},
+ Volume = {1268},
+ Year = {2004}
+}
+
+###Article{ reumann-reinerth-2004,
+ Author = {Reumann, M. and Reinerth, G. and Seemann, G. and Vahl,
+ C.F. and Hagl, S. and D{\"o}ssel, O.},
+ Journal = {International Congress Series},
+ Pages = {1102-1107},
+ Title = {Computer-aided electrode positioning in biventricular
+ pacing},
+ Volume = {1268},
+ Year = {2004}
+}
+
+@Article{ rhee-lee-98,
+ Author = {Rhee, K. and Lee, S.M.},
+ Journal = {Annals of Biomedical Engineering},
+ Title = {Effects of radial wall motion and flow waveform on the
+ wall shear rate distribution in the divergent vascular
+ graft},
+ Year = {1998}
+}
+
+###Article{ rhee-lee-98,
+ Author = {Rhee, K. and Lee, S.M.},
+ Journal = {Annals of Biomedical Engineering},
+ Title = {Effects of radial wall motion and flow waveform on the
+ wall shear rate distribution in the divergent vascular
+ graft},
+ Year = {1998}
+}
+
+@Article{ rice2008approximate,
+ Title = {Approximate model of cooperative activation and
+ crossbridge cycling in cardiac muscle using ordinary
+ differential equations},
+ Author = {Rice, John Jeremy and Wang, Fei and Bers, Donald M and De
+ Tombe, Pieter P},
+ Journal = {Biophysical journal},
+ Volume = {95},
+ Number = {5},
+ Pages = {2368--2390},
+ Year = {2008},
+ Publisher = {Elsevier}
+}
+
+@Article{ richter_cardiology_2006,
+ langid = {english},
+ Title = {Cardiology Is Flow},
+ Volume = {113},
+ ISSN = {1524-4539},
+ DOI = {10.1161/CIRCULATIONAHA.106.632687},
+ Number = {23},
+ JournalTitle = {Circulation},
+ ShortJournal = {Circulation},
+ Year = {2006-06-13},
+ Pages = {2679-2682},
+ Author = {Richter, Yoram and Edelman, Elazer R.},
+ EPrintType = {pmid},
+ EPrint = {16769924}
+}
+
+@Article{ riesenkampff2014pressure,
+ Title = {Pressure fields by flow-sensitive, 4D, velocity-encoded
+ CMR in patients with aortic coarctation},
+ Author = {Riesenkampff, Eug{\'e}nie and Fernandes, Joao Filipe and
+ Meier, Sebastian and Goubergrits, Leonid and Kropf,
+ Siegfried and Schubert, Stephan and Berger, Felix and
+ Henneumuth, Anja and Kuehne, Titus},
+ Journal = {JACC: Cardiovascular Imaging},
+ Volume = {7},
+ Number = {9},
+ Pages = {920--926},
+ Year = {2014},
+ Publisher = {Journal of the American College of Cardiology}
+}
+
+@Article{ riesenkampff_pressure_2014,
+ Title = {Pressure Fields by Flow-Sensitive, {{4D}},
+ Velocity-Encoded {{CMR}} in Patients with Aortic
+ Coarctation},
+ Volume = {7},
+ Number = {9},
+ JournalTitle = {JACC: Cardiovascular Imaging},
+ Year = {2014},
+ Pages = {920--926},
+ Author = {Riesenkampff, Eugénie and Fernandes, Joao Filipe and
+ Meier, Sebastian and Goubergrits, Leonid and Kropf,
+ Siegfried and Schubert, Stephan and Berger, Felix and
+ Hennemuth, Anja and Kuehne, Titus}
+}
+
+@Article{ rijcken1999abe,
+ Title = {Optimization of Cardiac Fiber Orientation for Homogeneous
+ Fiber Strain During Ejection},
+ Author = {Rijcken, J. and Bovendeerd, P.H.M. and Schoofs, A.J.G. and
+ van Campen, D.H. and Arts, T.},
+ Journal = {Annals of Biomedical Engineering},
+ Year = {1999},
+ Number = {3},
+ Pages = {289-297},
+ Volume = {27},
+ DOI = {10.1114/1.147},
+ File = {rijcken99.pdf:rijcken99.pdf:PDF},
+ ISSN = {0090-6964},
+ Keywords = {Left ventricle; Finite-element analysis},
+ Language = {English},
+ Publisher = {Kluwer Academic Publishers-Plenum Publishers},
+ timestamp = {2015/09/22},
+ URL = {http://dx.doi.org/10.1114/1.147}
+}
+
+@Article{ riley-et-al-92,
+ Author = {Riley, W.A. and Barnes, R.W. and Evans, G.W. and Burke,
+ G.L.},
+ Journal = {Stroke},
+ Pages = {952--956},
+ Title = {Ultrasonic measurement of the elastic modulus of the
+ common carotid artery. {T}he atherosclerosis risk in
+ communities study},
+ Volume = {23},
+ Year = {1992}
+}
+
+###Article{ riley-et-al-92,
+ Author = {Riley, W.A. and Barnes, R.W. and Evans, G.W. and Burke,
+ G.L.},
+ Journal = {Stroke},
+ Pages = {952--956},
+ Title = {Ultrasonic measurement of the elastic modulus of the
+ common carotid artery. {T}he atherosclerosis risk in
+ communities study},
+ Volume = {23},
+ Year = {1992}
+}
+
+@Article{ rinaudo2015computational,
+ Title = {Computational fluid dynamics simulation to evaluate aortic
+ coarctation gradient with contrast-enhanced CT},
+ Author = {Rinaudo, Antonino and D'Ancona, Giuseppe and Baglini,
+ Roberto and Amaducci, Andrea and Follis, Fabrizio and
+ Pilato, Michele and Pasta, Salvatore},
+ Journal = {Computer methods in biomechanics and biomedical
+ engineering},
+ Volume = {18},
+ Number = {10},
+ Pages = {1066--1071},
+ Year = {2015},
+ Publisher = {Taylor \& Francis}
+}
+
+@InBook{ roberts-thomas-91,
+ Author = {Roberts, J. E. and Thomas, J.-M.},
+ Chapter = {Mixed and hybrid methods},
+ Pages = {523--639},
+ Publisher = {North-Holland},
+ Title = {Handbook of numerical analysis},
+ Volume = {Vol. II},
+ Year = {1991}
+}
+
+###InBook{ roberts-thomas-91,
+ Author = {Roberts, J. E. and Thomas, J.-M.},
+ Chapter = {Mixed and hybrid methods},
+ Pages = {523--639},
+ Publisher = {North-Holland},
+ Title = {Handbook of numerical analysis},
+ Volume = {Vol. II},
+ Year = {1991}
+}
+
+@Article{ roberts2005frequency,
+ Title = {Frequency by decades of unicuspid, bicuspid, and tricuspid
+ aortic valves in adults having isolated aortic valve
+ replacement for aortic stenosis, with or without associated
+ aortic regurgitation},
+ Author = {Roberts, William C and Ko, Jong M},
+ Journal = {Circulation},
+ Volume = {111},
+ Number = {7},
+ Pages = {920--925},
+ Year = {2005},
+ Publisher = {Am Heart Assoc}
+}
+
+@Article{ rodriguez1994biomech,
+ Title = {Stress-dependent finite growth in soft elastic tissues },
+ Author = {Edward K. Rodriguez and Anne Hoger and Andrew D.
+ McCulloch},
+ Journal = {Journal of Biomechanics },
+ Year = {1994},
+ Number = {4},
+ Pages = {455 - 467},
+ Volume = {27},
+ Abstract = {Growth and remodeling in tissues may be modulated by
+ mechanical factors such as stress. For example, in cardiac
+ hypertrophy, alterations in wall stress arising from
+ changes in mechanical loading lead to cardiac growth and
+ remodeling. A general continuum formulation for finite
+ volumetric growth in soft elastic tissues is therefore
+ proposed. The shape change of an unloaded tissue during
+ growth is described by a mapping analogous to the
+ deformation gradient tensor. This mapping is decomposed
+ into a transformation of the local zero-stress reference
+ state and an accompanying elastic deformation that ensures
+ the compatibility of the total growth deformation. Residual
+ stress arises from this elastic deformation. Hence, a
+ complete kinematic formulation for growth in general
+ requires a knowledge of the constitutive law for stress in
+ the tissue. Since growth may in turn be affected by stress
+ in the tissue, a general form for the stress-dependent
+ growth law is proposed as a relation between the symmetric
+ growth-rate tensor and the stress tensor. With a
+ thick-walled hollow cylinder of incompressible, isotropic
+ hyperelastic material as an example, the mechanics of left
+ ventricular hypertrophy are investigated. The results show
+ that transmurally uniform pure circumferential growth,
+ which may be similar to eccentric ventricular hypertrophy,
+ changes the state of residual stress in the heart wall. A
+ model of axially loaded bone is used to test a simple
+ stress-dependent growth law in which growth rate depends on
+ the difference between the stress due to loading and a
+ predetermined growth equilibrium stress. },
+ DOI = {http://dx.doi.org/10.1016/0021-9290(94)90021-3},
+ File = {rodriguez94.pdf:rodriguez94.pdf:PDF},
+ ISSN = {0021-9290},
+ timestamp = {2015/09/21},
+ URL = {http://www.sciencedirect.com/science/article/pii/0021929094900213}
+}
+
+@Article{ roe-81,
+ Author = {P. L. Roe},
+ Journal = {J.C.P.},
+ Pages = {357},
+ Title = {Approximate {R}iemann solvers, parameter vectors and
+ difference schemes},
+ Volume = {43},
+ Year = {1981}
+}
+
+###Article{ roe-81,
+ Author = {P. L. Roe},
+ Journal = {J.C.P.},
+ Pages = {357},
+ Title = {Approximate {R}iemann solvers, parameter vectors and
+ difference schemes},
+ Volume = {43},
+ Year = {1981}
+}
+
+@Article{ romarowski2018patient,
+ Title = {Patient-specific CFD modelling in the thoracic aorta with
+ PC-MRI--based boundary conditions: A least-square
+ three-element Windkessel approach},
+ Author = {Romarowski, Rodrigo M and Lefieux, Adrien and Morganti,
+ Simone and Veneziani, Alessandro and Auricchio,
+ Ferdinando},
+ Journal = {International journal for numerical methods in biomedical
+ engineering},
+ Pages = {e3134},
+ Year = {2018},
+ Publisher = {Wiley Online Library}
+}
+
+@Article{ romarowski_patient-specific_2018,
+ langid = {english},
+ Title = {Patient-Specific {{CFD}} Modelling in the Thoracic Aorta
+ with {{PC}}-{{MRI}}âBased Boundary Conditions: {{A}}
+ Least-Square Three-Element {{Windkessel}} Approach},
+ Volume = {34},
+ ISSN = {2040-7947},
+ URL = {https://onlinelibrary.wiley.com/doi/abs/10.1002/cnm.3134},
+ DOI = {10.1002/cnm.3134},
+ ShortTitle = {Patient-Specific {{CFD}} Modelling in the Thoracic Aorta
+ with {{PC}}-{{MRI}}âBased Boundary Conditions},
+ Abstract = {The increasing use of computational fluid dynamics for
+ simulating blood flow in clinics demands the identification
+ of appropriate patient-specific boundary conditions for the
+ customization of the mathematical models. These conditions
+ should ideally be retrieved from measurements. However,
+ finite resolution of devices as well as other
+ practical/ethical reasons prevent the construction of
+ complete data sets necessary to make the mathematical
+ problems well posed. Available data need to be completed by
+ modelling assumptions, whose impact on the final solution
+ has to be carefully addressed. Focusing on aortic vascular
+ districts and related pathologies, we present here a method
+ for efficiently and robustly prescribing phase contrast
+ MRIâbased patient-specific data as boundary conditions at
+ the domain of interest. In particular, for the outlets, the
+ basic idea is to obtain pressure conditions from an
+ appropriate elaboration of available flow rates on the
+ basis of a 3D/0D dimensionally heterogeneous modelling. The
+ key point is that the parameters are obtained by a
+ constrained optimization procedure. The rationale is that
+ pressure conditions have a reduced impact on the numerical
+ solution compared with velocity conditions, yielding a
+ simulation framework less exposed to noise and
+ inconsistency of the data, as well as to the arbitrariness
+ of the underlying modelling assumptions. Numerical results
+ confirm the reliability of the approach in comparison with
+ other patient-specific approaches adopted in the
+ literature.},
+ Number = {11},
+ JournalTitle = {International Journal for Numerical Methods in Biomedical
+ Engineering},
+ URLDate = {2019-02-28},
+ Year = {2018},
+ Pages = {e3134},
+ Author = {Romarowski, Rodrigo M. and Lefieux, Adrien and Morganti,
+ Simone and Veneziani, Alessandro and Auricchio,
+ Ferdinando}
+}
+
+@Article{ romerio-secretan-86,
+ Annote = {mhd, aluminium},
+ Author = {Romerio, M. V. and Secr{\'e}tan, M.-A.},
+ code = {mhd25},
+ Journal = {Computer Physics Reports},
+ Pages = {327-360},
+ Title = {Magnetohydrodynamics equilibrium in aluminium electrolytic
+ cells},
+ Volume = {3},
+ Year = {1986}
+}
+
+###Article{ romerio-secretan-86,
+ Annote = {mhd, aluminium},
+ Author = {Romerio, M. V. and Secr{\'e}tan, M.-A.},
+ code = {mhd25},
+ Journal = {Computer Physics Reports},
+ Pages = {327-360},
+ Title = {Magnetohydrodynamics equilibrium in aluminium electrolytic
+ cells},
+ Volume = {3},
+ Year = {1986}
+}
+
+@Article{ rossi2013parallel,
+ Title = {Parallel adaptive mesh refinement for incompressible flow
+ problems},
+ Author = {Rossi, Riccardo and Cotela, J and Lafontaine, Nelson
+ Maireni and Dadvand, Pooyan and Idelsohn, SR},
+ Journal = {Computers \& Fluids},
+ Volume = {80},
+ Pages = {342--355},
+ Year = {2013},
+ Publisher = {Elsevier}
+}
+
+@Article{ rozza_reduction_2012,
+ langid = {english},
+ Title = {Reduction Strategies for {{PDE}}-Constrained Oprimization
+ Problems in {{Haemodynamics}}},
+ URL = {http://preprints.sissa.it/xmlui/handle/1963/6338},
+ Abstract = {Solving optimal control problems for many different
+ scenarios obtained by varying a set of parameters in the
+ state system is a computationally extensive task. In this
+ paper we present a new reduced framework for the
+ formulation, the analysis and the numerical solution of
+ parametrized PDE-constrained optimization problems. This
+ framework is based on a suitable saddle-point formulation
+ of the optimal control problem and exploits the reduced
+ basis method for the rapid and reliable solution of
+ parametrized PDEs, leading to a relevant computational
+ reduction with respect to traditional discretization
+ techniques such as the finite element method. This allows a
+ very efficient evaluation of state solutions and cost
+ functionals, leading to an effective solution of repeated
+ optimal control problems, even on domains of variable
+ shape, for which a further (geometrical) reduction is
+ pursued, relying on flexible shape parametrization
+ techniques. This setting is applied to the solution of two
+ problems arising from haemodynamics, dealing with both data
+ reconstruction and data assimilation over domains of
+ variable shape, which can be recast in a common
+ PDE-constrained optimization formulation.},
+ URLDate = {2019-02-20},
+ Year = {2012},
+ Author = {Rozza, Gianluigi and Manzoni, Andrea and Negri, Federico}
+}
+
+@Article{ rugonyi-bathe-01,
+ Author = {Rugonyi, S. and Bathe, K.J.},
+ code = {fsi16},
+ Journal = {CMES - Comp. Modeling Eng. Sci.},
+ Number = {2},
+ Pages = {195--212},
+ Title = {On finite element analysis of fluid flows coupled with
+ structural interaction},
+ Volume = {2},
+ Year = {2001}
+}
+
+###Article{ rugonyi-bathe-01,
+ Author = {Rugonyi, S. and Bathe, K.J.},
+ code = {fsi16},
+ Journal = {CMES - Comp. Modeling Eng. Sci.},
+ Number = {2},
+ Pages = {195--212},
+ Title = {On finite element analysis of fluid flows coupled with
+ structural interaction},
+ Volume = {2},
+ Year = {2001}
+}
+
+@Article{ rutz2008mrm,
+ Title = {Accelerated whole-heart 3D CSPAMM for myocardial motion
+ quantification.},
+ Author = {Rutz, Andrea K. and Ryf, Salome and Plein, Sven and
+ Boesiger, Peter and Kozerke, Sebastian},
+ Journal = {Magn Reson Med},
+ Year = {2008},
+ Month = {Apr},
+ Number = {4},
+ Pages = {755--763},
+ Volume = {59},
+ Abstract = {Myocardial tissue tagging using complementary spatial
+ modulation of magnetization (CSPAMM) allows detailed
+ assessment of myocardial motion. To capture the complex 3D
+ cardiac motion pattern, multiple 2D tagged slices are
+ usually acquired in different orientations. These
+ approaches are prone to slice misregistration and
+ associated with long acquisition times. In this work, a
+ fast method for acquiring 3D CSPAMM data is proposed that
+ allows measuring deformation of the whole heart in three
+ breath-holds of 18 heartbeats duration each. Three
+ acquisitions are sequentially performed with line tag
+ preparation in each orthogonal direction. Measurement
+ acceleration is achieved by applying localized tagging
+ preparation and a hybrid multishot, segmented echo-planar
+ imaging sequence. Five healthy volunteers and five patients
+ with myocardial infarction were measured. Midwall contours
+ were tracked throughout the cardiac cycle with an enhanced
+ variant of the harmonic phase (HARP) technique.
+ Circumferential shortening at end-systole ranged from
+ 14.1\% (base) to 20.1\% (apex) in healthy subjects.
+ Hypokinetic regions in patients corresponded well with
+ regions exhibiting hyperenhancement after contrast
+ injection. Time to maximum circumferential shortening
+ varied more significantly over the left ventricle in
+ patients than in volunteers (P<0.01). The proposed
+ measurement scheme was well tolerated by patients and holds
+ considerable potential to investigate cardiac mechanics in
+ various diseases.},
+ DOI = {10.1002/mrm.21363},
+ Institution = {Institute for Biomedical Engineering, University and ETH
+ Zurich, Switzerland. rutz@biomed.ee.ethz.ch},
+ Keywords = {Adult; Algorithms; Artificial Intelligence; Female; Heart,
+ physiopathology; Humans; Image Enhancement, methods; Image
+ Interpretation, Computer-Assisted, methods; Imaging,
+ Three-Dimensional, methods; Magnetic Resonance Imaging,
+ methods; Male; Movement; Myocardial Infarction,
+ pathology/physiopathology; Myocardium, pathology; Pattern
+ Recognition, Automated, methods; Reproducibility of
+ Results; Sensitivity and Specificity; Subtraction
+ Technique},
+ Language = {eng},
+ medline-pst = {ppublish},
+ owner = {stoeckc},
+ pmid = {18383307},
+ timestamp = {2015.07.24},
+ URL = {http://dx.doi.org/10.1002/mrm.21363}
+}
+
+@Article{ rutz2009ehj,
+ Title = {Left ventricular dyssynchrony in patients with left bundle
+ branch block and patients after myocardial infarction:
+ integration of mechanics and viability by cardiac magnetic
+ resonance.},
+ Author = {Rutz, Andrea K. and Manka, Robert and Kozerke, Sebastian
+ and Roas, Susanne and Boesiger, Peter and Schwitter,
+ Juerg},
+ Journal = {Eur Heart J},
+ Year = {2009},
+ Month = {Sep},
+ Number = {17},
+ Pages = {2117--2127},
+ Volume = {30},
+ Abstract = {To quantify left ventricular (LV) dyssynchrony in patients
+ with left bundle branch block (LBBB) and in patients after
+ myocardial infarction (MI) applying an accelerated
+ three-dimensional (3D) tagging cardiac magnetic resonance
+ (CMR) technique, and to combine dyssynchrony information
+ with viability data obtained by late gadolinium enhancement
+ (LGE) CMR.Thirty-two patients (59 +/- 11 years) after first
+ MI (Pats(MI)), 10 patients (63 +/- 10 years) with LBBB
+ (ejection fraction < 40\%; Pats(LBBB<40)), 13 patients (63
+ +/- 11) with LBBB (ejection fraction >or= 40\%; Pats(LBBB
+ >or=40 )), and 15 healthy controls (53 +/- 10 years)
+ underwent 3D tagging CMR and LGE imaging at 1.5 T. As a
+ measure of mechanical LV dyssynchrony, the standard
+ deviation of T(max) over the LV, the circumferential
+ uniformity ratio estimate (CURE) index, and a
+ segmental-based circumferential systolic dyssynchrony index
+ (SDI) were calculated. All three parameters detected
+ significantly increased circumferential dyssynchrony in
+ patients compared with controls. The CURE and SDI showed a
+ good correlation (r = 0.93, P < 0.0001) and detected most
+ severe dyssynchrony in Pats(LBBB<40) (P < 0.001 vs.
+ controls, P < 0.005 vs. Pats(MI)). Systolic dyssynchrony
+ index additionally allowed integration of localized
+ viability information to yield SDI(viable) which was
+ highest in Pats(LBBB<40).Dyssynchrony patterns in the LV
+ can be quantified globally and regionally by 3D tagging
+ CMR. Combination of viability and dyssynchrony information
+ allows for a comprehensive dyssynchrony quantification in
+ patients with LBBB or post-MI. Future studies are required
+ to test the value of the method to predict responsiveness
+ to resynchronization.},
+ DOI = {10.1093/eurheartj/ehp212},
+ Institution = {Institute for Biomedical Engineering, University and ETH
+ Zurich, Zurich, Switzerland.},
+ Keywords = {Adult; Aged; Bundle-Branch Block,
+ etiology/pathology/physiopathology; Case-Control Studies;
+ Female; Humans; Imaging, Three-Dimensional; Magnetic
+ Resonance Angiography; Male; Middle Aged; Myocardial
+ Infarction, complications/pathology/physiopathology;
+ Observer Variation; Ventricular Dysfunction, Left,
+ etiology/pathology/physiopathology},
+ Language = {eng},
+ medline-pst = {ppublish},
+ owner = {stoeckc},
+ pii = {ehp212},
+ pmid = {19477875},
+ timestamp = {2015.07.24},
+ URL = {http://dx.doi.org/10.1093/eurheartj/ehp212}
+}
+
+@Article{ ryan-elimelech-96,
+ Author = {Ryan, J.N. and Elimelech, M.},
+ code = {por18},
+ Journal = {Colloid and Surfaces, A: Physicochemical and Engineering
+ aspecsts},
+ Pages = {1-56},
+ Title = {Colloid mobilization and transport in groundwater},
+ Volume = {107},
+ Year = {1996}
+}
+
+###Article{ ryan-elimelech-96,
+ Author = {Ryan, J.N. and Elimelech, M.},
+ code = {por18},
+ Journal = {Colloid and Surfaces, A: Physicochemical and Engineering
+ aspecsts},
+ Pages = {1-56},
+ Title = {Colloid mobilization and transport in groundwater},
+ Volume = {107},
+ Year = {1996}
+}
+
+@Article{ ryan1996jacc,
+ Title = {ACC/AHA guidelines for the management of patients with
+ acute myocardial infarctionA report of the American College
+ of cardiology/American Heart Association Task Force on
+ Practice Guidelines (Committee on Management of Acute
+ Myocardial Infarction)},
+ Author = {Ryan, Thomas J. and Anderson, Jeffrey L. and Antman,
+ Elliott M. and Braniff, Blaine A. and Brooks, Neil H. and
+ Califf, Robert M. and Hillis, L. David and Hiratzka, Loren
+ F. and Rapaport, Elliott and Riegel, Barbara J. and
+ Russell, Richard O. and Smith, III ,Earl E. and Weaver, W.
+ Douglas and Ritchie, James L. and Cheitlin, Melvin D. and
+ Eagle, Kim A. and Gardner, Timothy J. and Garson, Jr.
+ ,Arthur and Gibbons, Raymond J. and Lewis, Richard P. and
+ O'Rourke, Robert A.},
+ Journal = {Journal of the American College of Cardiology},
+ Year = {1996},
+ Number = {5},
+ Pages = {1328-1419},
+ Volume = {28},
+ DOI = {10.1016/S0735-1097(96)00392-0},
+ EPrint = {/data/Journals/JAC/22864/03920.pdf},
+ File = {ryan96.pdf:ryan96.pdf:PDF},
+ timestamp = {2015/09/13},
+ URL = { + http://dx.doi.org/10.1016/S0735-1097(96)00392-0}
+}
+
+@Article{ saad-schultz-86,
+ Author = {Saad, Y. and Schultz, M. H.},
+ fjournal = {Society for Industrial and Applied Mathematics. Journal on
+ Scientific and Statistical Computing},
+ Journal = {SIAM J. Sci. Statist. Comput.},
+ Number = {3},
+ Pages = {856--869},
+ Title = {G{MRES}: a generalized minimal residual algorithm for
+ solving nonsymmetric linear systems},
+ Volume = {7},
+ Year = {1986}
+}
+
+###Article{ saad-schultz-86,
+ Author = {Saad, Y. and Schultz, M. H.},
+ fjournal = {Society for Industrial and Applied Mathematics. Journal on
+ Scientific and Statistical Computing},
+ Journal = {SIAM J. Sci. Statist. Comput.},
+ Number = {3},
+ Pages = {856--869},
+ Title = {G{MRES}: a generalized minimal residual algorithm for
+ solving nonsymmetric linear systems},
+ Volume = {7},
+ Year = {1986}
+}
+
+@Book{ saad_iterative_2003,
+ Location = {{Philadelphia}},
+ Title = {Iterative Methods for Sparse Linear Systems},
+ Edition = {2nd ed},
+ ISBN = {978-0-89871-534-7},
+ PageTotal = {528},
+ Publisher = {{SIAM}},
+ Date = {2003},
+ Author = {Saad, Y.}
+}
+
+@Article{ sachs1994mrm,
+ Author = {Sachs, Todd S. and Meyer, Craig H. and Hu, Bob S. and
+ Kohli, Jim and Nishimura, Dwight G. and Macovski, Albert},
+ Title = {Real-time motion detection in spiral MRI using
+ navigators},
+ Journal = {Magnetic Resonance in Medicine},
+ Volume = {32},
+ Number = {5},
+ Publisher = {Wiley Subscription Services, Inc., A Wiley Company},
+ ISSN = {1522-2594},
+ Pages = {639--645},
+ Keywords = {Motion artifacts, navigators, MRI},
+ Year = {1994}
+}
+
+@Article{ saint-venant-71,
+ Author = {de Saint-Venant, A.J.C.},
+ Journal = {C. R. Acad. Sc. Paris},
+ Pages = {147--154},
+ Title = {Th{\'e}orie du mouvement non-permanent des eaux, avec
+ application aux crues des rivi{\`e}res et {\`a}
+ l'introduction des mar{\'e}es dans leur lit},
+ Volume = {73},
+ Year = {1871}
+}
+
+###Article{ saint-venant-71,
+ Author = {de Saint-Venant, A.J.C.},
+ Journal = {C. R. Acad. Sc. Paris},
+ Pages = {147--154},
+ Title = {Th{\'e}orie du mouvement non-permanent des eaux, avec
+ application aux crues des rivi{\`e}res et {\`a}
+ l'introduction des mar{\'e}es dans leur lit},
+ Volume = {73},
+ Year = {1871}
+}
+
+@Article{ saintemarie2006,
+ Title = "Modeling and estimation of the cardiac electromechanical
+ activity",
+ Journal = "Computers \& Structures",
+ Volume = "84",
+ Number = "28",
+ Pages = "1743 - 1759",
+ Year = "2006",
+ Note = "",
+ ISSN = "0045-7949",
+ DOI = "10.1016/j.compstruc.2006.05.003",
+ Author = "J. Sainte-Marie and D. Chapelle and R. Cimrman and M.
+ Sorine",
+ Keywords = "Computer-aided diagnosis"
+}
+
+@Article{ salmon-thiriet-gerbeau-02,
+ Author = {Salmon, S. and Thiriet, M. and Gerbeau, J-F.},
+ Journal = {ESAIM-Proceeding},
+ Pages = {140-145},
+ Title = {Numerical simulations of blood flows in arteries for
+ interventional medicines},
+ Volume = {12},
+ Year = {2002}
+}
+
+###Article{ salmon-thiriet-gerbeau-02,
+ Author = {Salmon, S. and Thiriet, M. and Gerbeau, J-F.},
+ Journal = {ESAIM-Proceeding},
+ Pages = {140-145},
+ Title = {Numerical simulations of blood flows in arteries for
+ interventional medicines},
+ Volume = {12},
+ Year = {2002}
+}
+
+@Article{ salmon-thiriet-gerbeau-03,
+ Author = {Salmon, S. and Thiriet, M. and Gerbeau, J-F.},
+ Journal = {Math. Model. Num. Anal.},
+ Number = 4,
+ Pages = {631-648},
+ Title = {Medical image - based computational model of pulsatile
+ flow in saccular aneurisms },
+ Volume = 37,
+ Year = 2003
+}
+
+###Article{ salmon-thiriet-gerbeau-03,
+ Author = {Salmon, S. and Thiriet, M. and Gerbeau, J-F.},
+ Journal = {Math. Model. Num. Anal.},
+ Number = 4,
+ Pages = {631-648},
+ Title = {Medical image - based computational model of pulsatile
+ flow in saccular aneurisms },
+ Volume = 37,
+ Year = 2003
+}
+
+@InProceedings{ salsac-05,
+ Author = {Salsac, A.-V. and Fern\'andez, M.A. and Chomaz, J.M. and
+ Le Tallec, P.},
+ BookTitle = {Bulletin of the American Physical Society},
+ Title = {Effects of the flexibility of the arterial wall on the
+ wall shear stresses and wall tension in abdominal aortic
+ aneurysms},
+ Year = {2005}
+}
+
+###InProceedings{ salsac-05,
+ Author = {Salsac, A.-V. and Fern\'andez, M.A. and Chomaz, J.M. and
+ Le Tallec, P.},
+ BookTitle = {Bulletin of the American Physical Society},
+ Title = {Effects of the flexibility of the arterial wall on the
+ wall shear stresses and wall tension in abdominal aortic
+ aneurysms},
+ Year = {2005}
+}
+
+@Article{ salsac-06,
+ Author = {Salsac, A.-V. and Sparks, S.R. and Chomaz, J.M. and
+ Lasheras, J.C.},
+ Journal = { J. Fluid Mech.},
+ Pages = {19-51},
+ Title = { Evolution of the wall shear stresses during the
+ progressive enlargement of symmetric abdominal aortic
+ aneurysms},
+ Volume = {550},
+ Year = {2006}
+}
+
+###Article{ salsac-06,
+ Author = {Salsac, A.-V. and Sparks, S.R. and Chomaz, J.M. and
+ Lasheras, J.C.},
+ Journal = { J. Fluid Mech.},
+ Pages = {19-51},
+ Title = { Evolution of the wall shear stresses during the
+ progressive enlargement of symmetric abdominal aortic
+ aneurysms},
+ Volume = {550},
+ Year = {2006}
+}
+
+@Article{ salvucci-schiavone-craiem-barra-07,
+ Author = {Salvucci, F. and Schiavone, J. and Craiem, D. and Barra,
+ J.G.},
+ Journal = {Journal of Physics: Conference Series},
+ Volume = {90},
+ Title = {Arterial wall mechanics as a function of heart rate: role
+ of vascular smooth muscle},
+ Year = {2007}
+}
+
+###Article{ salvucci-schiavone-craiem-barra-07,
+ Author = {Salvucci, F. and Schiavone, J. and Craiem, D. and Barra,
+ J.G.},
+ Journal = {Journal of Physics: Conference Series},
+ Volume = {90},
+ Title = {Arterial wall mechanics as a function of heart rate: role
+ of vascular smooth muscle},
+ Year = {2007}
+}
+
+@Article{ samsel-perelson-82,
+ Annote = {red blood cell},
+ Author = {Samsel, R.W. and Perelson, A.S.},
+ code = {cel11},
+ Journal = {Biophys. J.},
+ Pages = {493--514},
+ Title = {Kinetics of rouleaux formation. {I. A} mass action
+ approach with geometric features},
+ Volume = {37},
+ Year = {1982}
+}
+
+###Article{ samsel-perelson-82,
+ Annote = {red blood cell},
+ Author = {Samsel, R.W. and Perelson, A.S.},
+ code = {cel11},
+ Journal = {Biophys. J.},
+ Pages = {493--514},
+ Title = {Kinetics of rouleaux formation. {I. A} mass action
+ approach with geometric features},
+ Volume = {37},
+ Year = {1982}
+}
+
+@Article{ samsel-perelson-84,
+ Annote = {red blood cell},
+ Author = {Samsel, R.W. and Perelson, A.S.},
+ code = {cel12},
+ Journal = {Biophys. J.},
+ Pages = {805--824},
+ Title = {Kinetics of rouleaux formation. {II. Reversible
+ reactions}},
+ Volume = {45},
+ Year = {1984}
+}
+
+###Article{ samsel-perelson-84,
+ Annote = {red blood cell},
+ Author = {Samsel, R.W. and Perelson, A.S.},
+ code = {cel12},
+ Journal = {Biophys. J.},
+ Pages = {805--824},
+ Title = {Kinetics of rouleaux formation. {II. Reversible
+ reactions}},
+ Volume = {45},
+ Year = {1984}
+}
+
+@InBook{ samsel-perelson-84b,
+ Annote = {red blood cell},
+ Author = {Samsel, R.W. and Perelson, A.S.},
+ code = {cel13},
+ Pages = {805--824},
+ Publisher = {Elsevier Sciences Pub.},
+ Title = {Kinetics of red blood cell aggregation: an example of
+ geometric polymerization},
+ Year = {1984}
+}
+
+###InBook{ samsel-perelson-84b,
+ Annote = {red blood cell},
+ Author = {Samsel, R.W. and Perelson, A.S.},
+ code = {cel13},
+ Pages = {805--824},
+ Publisher = {Elsevier Sciences Pub.},
+ Title = {Kinetics of red blood cell aggregation: an example of
+ geometric polymerization},
+ Year = {1984}
+}
+
+@Article{ sanchez-palencia-68,
+ Annote = {mhd, existence},
+ Author = {Sanchez-Palancia, E.},
+ code = {mhd2},
+ Journal = {Journal de M{\'e}canique},
+ Month = {Septembre},
+ Number = {3},
+ Pages = {405-426},
+ Title = {Existence des solutions de certains probl{\`e}mes aux
+ limites en magn{\'e}tohydrodynamique},
+ Volume = {7},
+ Year = {1968}
+}
+
+###Article{ sanchez-palencia-68,
+ Annote = {mhd, existence},
+ Author = {Sanchez-Palancia, E.},
+ code = {mhd2},
+ Journal = {Journal de M{\'e}canique},
+ Month = {Septembre},
+ Number = {3},
+ Pages = {405-426},
+ Title = {Existence des solutions de certains probl{\`e}mes aux
+ limites en magn{\'e}tohydrodynamique},
+ Volume = {7},
+ Year = {1968}
+}
+
+@Article{ sanchez-palencia-69,
+ Annote = {mhd, existence},
+ Author = {Sanchez-Palancia, E.},
+ code = {mhd3},
+ Journal = {Journal de M{\'e}canique},
+ Number = {4},
+ Pages = {509-541},
+ Title = {Quelques r{\'e}sultats d'existence et d'unicit{\'e} pour
+ des {\'e}coulements magn{\'e}tohydrodynamiques non
+ stationnaires},
+ Volume = {8},
+ Year = {1969}
+}
+
+###Article{ sanchez-palencia-69,
+ Annote = {mhd, existence},
+ Author = {Sanchez-Palancia, E.},
+ code = {mhd3},
+ Journal = {Journal de M{\'e}canique},
+ Number = {4},
+ Pages = {509-541},
+ Title = {Quelques r{\'e}sultats d'existence et d'unicit{\'e} pour
+ des {\'e}coulements magn{\'e}tohydrodynamiques non
+ stationnaires},
+ Volume = {8},
+ Year = {1969}
+}
+
+@Article{ sanchez1996,
+ Title = {Ventricular myoarchitecture in tetralogy of Fallot.},
+ Author = {Sanchez-Quintana, D. and Anderson, R. H. and Ho, S. Y.},
+ Journal = {Heart},
+ Volume = {76},
+ Number = {3},
+ Pages = {280--286},
+ Year = {1996},
+ Publisher = {BMJ Publishing Group Ltd and British Cardiovascular
+ Society}
+}
+
+@InProceedings{ sands2008,
+ Title = {Virtual sectioning of cardiac tissue relative to fiber
+ orientation},
+ Author = {Sands, G. B. and Smaill, B. H. and LeGrice, I. J.},
+ BookTitle = {Engineering in Medicine and Biology Society, 2008. EMBS
+ 2008. 30th Annual International Conference of the IEEE},
+ Pages = {226--229},
+ Year = {2008}
+}
+
+@Article{ sankaran_fast_2015,
+ Title = {Fast {{Computation}} of {{Hemodynamic Sensitivity}} to
+ {{Lumen Segmentation Uncertainty}}},
+ Volume = {34},
+ ISSN = {0278-0062},
+ DOI = {10.1109/TMI.2015.2445777},
+ Abstract = {Patient-specific blood flow modeling combining imaging
+ data and computational fluid dynamics can aid in the
+ assessment of coronary artery disease. Accurate coronary
+ segmentation and realistic physiologic modeling of boundary
+ conditions are important steps to ensure a high diagnostic
+ performance. Segmentation of the coronary arteries can be
+ constructed by a combination of automated algorithms with
+ human review and editing. However, blood pressure and flow
+ are not impacted equally by different local sections of the
+ coronary artery tree. Focusing human review and editing
+ towards regions that will most affect the subsequent
+ simulations can significantly accelerate the review
+ process. We define geometric sensitivity as the standard
+ deviation in hemodynamics-derived metrics due to
+ uncertainty in lumen segmentation. We develop a machine
+ learning framework for estimating the geometric sensitivity
+ in real time. Features used include geometric and clinical
+ variables, and reduced-order models. We develop an
+ anisotropic kernel regression method for assessment of
+ lumen narrowing score, which is used as a feature in the
+ machine learning algorithm. A multi-resolution sensitivity
+ algorithm is introduced to hierarchically refine regions of
+ high sensitivity so that we can quantify sensitivities to a
+ desired spatial resolution. We show that the mean absolute
+ error of the machine learning algorithm compared to 3D
+ simulations is less than 0.01. We further demonstrate that
+ sensitivity is not predicted simply by anatomic reduction
+ but also encodes information about hemodynamics which in
+ turn depends on downstream boundary conditions. This
+ sensitivity approach can be extended to other systems such
+ as cerebral flow, electro-mechanical simulations, etc.},
+ Number = {12},
+ JournalTitle = {IEEE Transactions on Medical Imaging},
+ Date = {2015-12},
+ Pages = {2562-2571},
+ Author = {Sankaran, S. and Grady, L. and Taylor, C. A.}
+}
+
+###Article{ sankaran_fast_2015,
+ Title = {Fast {{Computation}} of {{Hemodynamic Sensitivity}} to
+ {{Lumen Segmentation Uncertainty}}},
+ Volume = {34},
+ ISSN = {0278-0062},
+ DOI = {10.1109/TMI.2015.2445777},
+ Abstract = {Patient-specific blood flow modeling combining imaging
+ data and computational fluid dynamics can aid in the
+ assessment of coronary artery disease. Accurate coronary
+ segmentation and realistic physiologic modeling of boundary
+ conditions are important steps to ensure a high diagnostic
+ performance. Segmentation of the coronary arteries can be
+ constructed by a combination of automated algorithms with
+ human review and editing. However, blood pressure and flow
+ are not impacted equally by different local sections of the
+ coronary artery tree. Focusing human review and editing
+ towards regions that will most affect the subsequent
+ simulations can significantly accelerate the review
+ process. We define geometric sensitivity as the standard
+ deviation in hemodynamics-derived metrics due to
+ uncertainty in lumen segmentation. We develop a machine
+ learning framework for estimating the geometric sensitivity
+ in real time. Features used include geometric and clinical
+ variables, and reduced-order models. We develop an
+ anisotropic kernel regression method for assessment of
+ lumen narrowing score, which is used as a feature in the
+ machine learning algorithm. A multi-resolution sensitivity
+ algorithm is introduced to hierarchically refine regions of
+ high sensitivity so that we can quantify sensitivities to a
+ desired spatial resolution. We show that the mean absolute
+ error of the machine learning algorithm compared to 3D
+ simulations is less than 0.01. We further demonstrate that
+ sensitivity is not predicted simply by anatomic reduction
+ but also encodes information about hemodynamics which in
+ turn depends on downstream boundary conditions. This
+ sensitivity approach can be extended to other systems such
+ as cerebral flow, electro-mechanical simulations, etc.},
+ Number = {12},
+ JournalTitle = {IEEE Transactions on Medical Imaging},
+ Year = {2015-12},
+ Pages = {2562-2571},
+ Author = {Sankaran, S. and Grady, L. and Taylor, C. A.}
+}
+
+@Article{ sankaran_impact_2015,
+ Title = {Impact of Geometric Uncertainty on Hemodynamic Simulations
+ Using Machine Learning},
+ Volume = {297},
+ JournalTitle = {Computer Methods in Applied Mechanics and Engineering},
+ Date = {2015},
+ Pages = {167--190},
+ Author = {Sankaran, Sethuraman and Grady, Leo and Taylor, Charles
+ A.}
+}
+
+###Article{ sankaran_impact_2015,
+ Title = {Impact of Geometric Uncertainty on Hemodynamic Simulations
+ Using Machine Learning},
+ Volume = {297},
+ JournalTitle = {Computer Methods in Applied Mechanics and Engineering},
+ Year = {2015},
+ Pages = {167--190},
+ Author = {Sankaran, Sethuraman and Grady, Leo and Taylor, Charles
+ A.}
+}
+
+@Article{ sankaran_stochastic_2011,
+ Title = {A Stochastic Collocation Method for Uncertainty
+ Quantification and Propagation in Cardiovascular
+ Simulations},
+ Volume = {133},
+ Number = {3},
+ JournalTitle = {Journal of biomechanical engineering},
+ Date = {2011},
+ Pages = {031001},
+ Author = {Sankaran, Sethuraman and Marsden, Alison L.}
+}
+
+###Article{ sankaran_stochastic_2011,
+ Title = {A Stochastic Collocation Method for Uncertainty
+ Quantification and Propagation in Cardiovascular
+ Simulations},
+ Volume = {133},
+ Number = {3},
+ JournalTitle = {Journal of biomechanical engineering},
+ Year = {2011},
+ Pages = {031001},
+ Author = {Sankaran, Sethuraman and Marsden, Alison L.}
+}
+
+@Article{ sankaran_uncertainty_2016,
+ Title = {Uncertainty Quantification in Coronary Blood Flow
+ Simulations: Impact of Geometry, Boundary Conditions and
+ Blood Viscosity},
+ Volume = {49},
+ ShortTitle = {Uncertainty Quantification in Coronary Blood Flow
+ Simulations},
+ Number = {12},
+ JournalTitle = {Journal of biomechanics},
+ Date = {2016},
+ Pages = {2540--2547},
+ Author = {Sankaran, Sethuraman and Kim, Hyun Jin and Choi, Gilwoo
+ and Taylor, Charles A.}
+}
+
+###Article{ sankaran_uncertainty_2016,
+ Title = {Uncertainty Quantification in Coronary Blood Flow
+ Simulations: Impact of Geometry, Boundary Conditions and
+ Blood Viscosity},
+ Volume = {49},
+ ShortTitle = {Uncertainty Quantification in Coronary Blood Flow
+ Simulations},
+ Number = {12},
+ JournalTitle = {Journal of biomechanics},
+ Year = {2016},
+ Pages = {2540--2547},
+ Author = {Sankaran, Sethuraman and Kim, Hyun Jin and Choi, Gilwoo
+ and Taylor, Charles A.}
+}
+
+@Book{ saramito,
+ Author = {Saramito, B.},
+ Publisher = {Masson},
+ Title = {Stabilit{\'e} d'un plasma~: mod{\'e}lisation
+ math{\'e}matique et simulation num{\'e}rique},
+ Year = {1994}
+}
+
+###Book{ saramito,
+ Author = {Saramito, B.},
+ Publisher = {Masson},
+ Title = {Stabilit{\'e} d'un plasma~: mod{\'e}lisation
+ math{\'e}matique et simulation num{\'e}rique},
+ Year = {1994}
+}
+
+@Article{ sassara-achili-bianchi-2004,
+ Author = {Sassara, M. and Achilli, A. and Bianchi, S. and et al.},
+ Journal = {PACE},
+ Title = {Long-term effectiveness of dual site left ventricular
+ cardiac resynchronization therapy in a patient with
+ congestive heart failure},
+ Volume = {27},
+ Year = {2004}
+}
+
+###Article{ sassara-achili-bianchi-2004,
+ Author = {Sassara, M. and Achilli, A. and Bianchi, S. and et al.},
+ Journal = {PACE},
+ Title = {Long-term effectiveness of dual site left ventricular
+ cardiac resynchronization therapy in a patient with
+ congestive heart failure},
+ Volume = {27},
+ Year = {2004}
+}
+
+###Article{ sassara-achili-bianchi-2004,
+ Author = {Sassara, M. and Achilli, A. and Bianchi, S. and et al.},
+ Journal = {PACE},
+ Title = {Long-term effectiveness of dual site left ventricular
+ cardiac resynchronization therapy in a patient with
+ congestive heart failure},
+ Volume = {27},
+ Year = {2004}
+}
+
+###Article{ sassara-achili-bianchi-2004,
+ Author = {Sassara, M. and Achilli, A. and Bianchi, S. and et al.},
+ Journal = {PACE},
+ Title = {Long-term effectiveness of dual site left ventricular
+ cardiac resynchronization therapy in a patient with
+ congestive heart failure},
+ Volume = {27},
+ Year = {2004}
+}
+
+@Article{ savadjiev2012heart,
+ Title = {Heart wall myofibers are arranged in minimal surfaces to
+ optimize organ function},
+ Author = {Savadjiev, Peter and Strijkers, Gustav J and Bakermans,
+ Adrianus J and Piuze, Emmanuel and Zucker, Steven W and
+ Siddiqi, Kaleem},
+ Journal = {Proceedings of the National Academy of Sciences},
+ Volume = {109},
+ Number = {24},
+ Pages = {9248--9253},
+ Year = {2012},
+ Publisher = {National Acad Sciences}
+}
+
+@Article{ schriefl-etal-11,
+ Title = {Determination of the layer-specific distributed collagen
+ fibre orientations in human thoracic and abdominal aortas
+ and common iliac arteries},
+ Author = {Schriefl, Andreas J and Zeindlinger, Georg and Pierce,
+ David M and Regitnig, Peter and Holzapfel, Gerhard A},
+ Journal = {Journal of the Royal Society Interface},
+ Volume = {9},
+ Number = {71},
+ Pages = {1275--1286},
+ Year = {2012},
+ Publisher = {The Royal Society}
+}
+
+@Article{ scollan1998,
+ Author = {Scollan, D. F. and Holmes, A. and Winslow, R. and Forder,
+ J.},
+ Title = {Histological validation of myocardial microstructure
+ obtained from diffusion tensor magnetic resonance imaging},
+ Volume = {275},
+ Number = {6},
+ Pages = {H2308-H2318},
+ Year = {1998},
+ Abstract = {Diffusion tensor magnetic resonance imaging (MRI) is a
+ possible new means of elucidating the anatomic structure of
+ the myocardium. It enjoys several advantages over
+ traditional histological approaches, including the ability
+ to rapidly measure fiber organization in isolated,
+ perfused, arrested hearts, thereby avoiding fixation and
+ sectioning of artifacts. However, quantitative validation
+ of this MRI method has been lacking. Here, fiber
+ orientations estimated in the same locations in the same
+ heart using both diffusion tensor MRI and histology are
+ compared in a total of two perfused rabbit hearts. Fiber
+ orientations were statistically similar for both methods
+ and differed on average by 12° at any single location.
+ This is similar to the 10° uncertainty in fiber
+ orientation achieved with histology. In addition, imaging
+ studies performed in a total of seven hearts support a
+ level of organization beyond the myofiber, the recently
+ described laminar organization of the ventricular
+ myocardium.},
+ Journal = {American Journal of Physiology - Heart and Circulatory
+ Physiology}
+}
+
+@Article{ scollan1998histological,
+ Title = {Histological validation of myocardial microstructure
+ obtained from diffusion tensor magnetic resonance imaging},
+ Author = {Scollan, D.F. and Holmes, A. and Winslow, R. and Forder,
+ J.},
+ Journal = {American Journal of Physiology-Heart and Circulatory
+ Physiology},
+ Volume = {275},
+ Number = {6},
+ Pages = {H2308--H2318},
+ Year = {1998},
+ Publisher = {Am Physiological Soc}
+}
+
+@Article{ scott-zhang-90,
+ Author = {Scott, L.~R. and Zhang, S.},
+ Title = {Finite element interpolation of nonsmooth functions
+ satisfying boundary conditions},
+ Journal = {Math. Comp.},
+ fjournal = {Mathematics of Computation},
+ Volume = {54},
+ Year = {1990},
+ Number = {190},
+ Pages = {483--493}
+}
+
+###Article{ scott-zhang-90,
+ Author = {Scott, L.~R. and Zhang, S.},
+ Title = {Finite element interpolation of nonsmooth functions
+ satisfying boundary conditions},
+ Journal = {Math. Comp.},
+ fjournal = {Mathematics of Computation},
+ Volume = {54},
+ Year = {1990},
+ Number = {190},
+ Pages = {483--493}
+}
+
+@Article{ scott1985norm,
+ Title = {Norm estimates for a maximal right inverse of the
+ divergence operator in spaces of piecewise polynomials},
+ Author = {Scott, LR and Vogelius, M},
+ Journal = {RAIRO-Mod{\'e}lisation math{\'e}matique et analyse
+ num{\'e}rique},
+ Volume = {19},
+ Number = {1},
+ Pages = {111--143},
+ Year = {1985}
+}
+
+###Article{ scott1985norm,
+ Title = {Norm estimates for a maximal right inverse of the
+ divergence operator in spaces of piecewise polynomials},
+ Author = {Scott, LR and Vogelius, M},
+ Journal = {RAIRO-Mod{\'e}lisation math{\'e}matique et analyse
+ num{\'e}rique},
+ Volume = {19},
+ Number = {1},
+ Pages = {111--143},
+ Year = {1985}
+}
+
+@Article{ segal2010precond,
+ Title = {Preconditioners for incompressible Navier-Stokes solvers},
+ Author = {Segal, A and ur Rehman, M and Vuik, C},
+ Journal = {Numerical Mathematics: Theory, Methods and Applications},
+ Volume = {3},
+ Number = {3},
+ Pages = {245--275},
+ Year = {2010}
+}
+
+@Article{ segatz-droste-94,
+ Annote = {mhd, aluminium, stability},
+ Author = {Segatz, M. and Droste, C.},
+ code = {mhd33},
+ Journal = {Light Metals},
+ Pages = {313-322},
+ Title = {Analysis of magnetohydrodynamic instabilities in aluminium
+ reduction cells},
+ Year = {1994}
+}
+
+###Article{ segatz-droste-94,
+ Annote = {mhd, aluminium, stability},
+ Author = {Segatz, M. and Droste, C.},
+ code = {mhd33},
+ Journal = {Light Metals},
+ Pages = {313-322},
+ Title = {Analysis of magnetohydrodynamic instabilities in aluminium
+ reduction cells},
+ Year = {1994}
+}
+
+@Article{ segers2008nature,
+ Title = {Stem-cell therapy for cardiac disease},
+ Author = {Segers, Vincent and Lee, Richard},
+ Journal = {Nature},
+ Year = {2008},
+ Month = {Feb},
+ Number = {7181},
+ Pages = {937--942},
+ Volume = {451},
+ DOI = {10.1038/nature06800},
+ File = {:Segers2008Nature.pdf:PDF},
+ ISSN = {1476-4687},
+ Publisher = {Nature Publishing Group},
+ URL = {http://dx.doi.org/10.1038/nature06800}
+}
+
+@Article{ segment,
+ Title = {Design and validation of Segment - freely available
+ software for cardiovascular image analysis},
+ Author = {Heiberg, Einar and Sjogren, Jane and Ugander, Martin and
+ Carlsson, Marcus and Engblom, Henrik and Arheden, Hakan},
+ Journal = {BMC Medical Imaging},
+ Year = {2010},
+ Number = {1},
+ Pages = {1},
+ Volume = {10},
+ Abstract = {BACKGROUND:Commercially available software for
+ cardiovascular image analysis often has limited
+ functionality and frequently lacks the careful validation
+ that is required for clinical studies. We have already
+ implemented a cardiovascular image analysis software
+ package and released it as freeware for the research
+ community. However, it was distributed as a stand-alone
+ application and other researchers could not extend it by
+ writing their own custom image analysis algorithms. We
+ believe that the work required to make a clinically
+ applicable prototype can be reduced by making the software
+ extensible, so that researchers can develop their own
+ modules or improvements. Such an initiative might then
+ serve as a bridge between image analysis research and
+ cardiovascular research. The aim of this article is
+ therefore to present the design and validation of a
+ cardiovascular image analysis software package (Segment)
+ and to announce its release in a source code
+ format.RESULTS:Segment can be used for image analysis in
+ magnetic resonance imaging (MRI), computed tomography (CT),
+ single photon emission computed tomography (SPECT) and
+ positron emission tomography (PET). Some of its main
+ features include loading of DICOM images from all major
+ scanner vendors, simultaneous display of multiple image
+ stacks and plane intersections, automated segmentation of
+ the left ventricle, quantification of MRI flow, tools for
+ manual and general object segmentation, quantitative
+ regional wall motion analysis, myocardial viability
+ analysis and image fusion tools. Here we present an
+ overview of the validation results and validation
+ procedures for the functionality of the software. We
+ describe a technique to ensure continued accuracy and
+ validity of the software by implementing and using a test
+ script that tests the functionality of the software and
+ validates the output. The software has been made freely
+ available for research purposes in a source code format on
+ the project home page http://segment.heiberg.se
+ webcite.CONCLUSIONS: Segment is a well-validated
+ comprehensive software package for cardiovascular image
+ analysis. It is freely available for research purposes
+ provided that relevant original research publications
+ related to the software are cited.},
+ DOI = {10.1186/1471-2342-10-1},
+ ISSN = {1471-2342},
+ pubmedid = {20064248},
+ timestamp = {2015/09/23},
+ URL = {http://www.biomedcentral.com/1471-2342/10/1}
+}
+
+@Article{ sele-77,
+ Author = {Sele, T.},
+ Journal = {Light Metal},
+ Pages = {7-24},
+ Title = {Instabilities of the metal surface in electrolytic cells},
+ Year = {1977}
+}
+
+###Article{ sele-77,
+ Author = {Sele, T.},
+ Journal = {Light Metal},
+ Pages = {7-24},
+ Title = {Instabilities of the metal surface in electrolytic cells},
+ Year = {1977}
+}
+
+@TechReport{ sermange-81,
+ Annote = {mhd, stability, plasma},
+ Author = {Sermange, M.},
+ code = {mhd26},
+ Institution = {INRIA RR-92},
+ Title = {Mod{\'e}lisation de la stabilit{\'e} magnetohydrodynamique
+ bidimensionnelle par une {\'e}quation diff{\'e}rentielle
+ g{\'e}n{\'e}ralis{\'e}e},
+ Year = {1981}
+}
+
+###TechReport{ sermange-81,
+ Annote = {mhd, stability, plasma},
+ Author = {Sermange, M.},
+ code = {mhd26},
+ Institution = {INRIA RR-92},
+ Title = {Mod{\'e}lisation de la stabilit{\'e} magnetohydrodynamique
+ bidimensionnelle par une {\'e}quation diff{\'e}rentielle
+ g{\'e}n{\'e}ralis{\'e}e},
+ Year = {1981}
+}
+
+@Article{ sermange-temam-83,
+ Annote = {mhd, existence, long time},
+ Author = {Sermange, M. and Temam, R.},
+ code = {mhd1},
+ Journal = {Comm. Pure Appl. Math.},
+ Pages = {635-664},
+ Title = {Some mathematical questions related to the {MHD}
+ equations},
+ Volume = {XXXVI},
+ Year = {1983}
+}
+
+###Article{ sermange-temam-83,
+ Annote = {mhd, existence, long time},
+ Author = {Sermange, M. and Temam, R.},
+ code = {mhd1},
+ Journal = {Comm. Pure Appl. Math.},
+ Pages = {635-664},
+ Title = {Some mathematical questions related to the {MHD}
+ equations},
+ Volume = {XXXVI},
+ Year = {1983}
+}
+
+@Article{ sermesant-coudiere-03,
+ Author = {Sermesant, M. and Coudi{\`e}re, Y. and Delingette, H. and
+ Ayache, N. and Sainte-Marie, J. and Chapelle, D. and
+ Cl{\'e}ment, F. and Sorine, M.},
+ Journal = {ESAIM-Proceedings},
+ Pages = {153-161},
+ Title = {Progress towards model-based estimation of the cardiac
+ electromechanical activity from ECG signals and 4D images},
+ Volume = {12},
+ Year = {2003}
+}
+
+###Article{ sermesant-coudiere-03,
+ Author = {Sermesant, M. and Coudi{\`e}re, Y. and Delingette, H. and
+ Ayache, N. and Sainte-Marie, J. and Chapelle, D. and
+ Cl{\'e}ment, F. and Sorine, M.},
+ Journal = {ESAIM-Proceedings},
+ Pages = {153-161},
+ Title = {Progress towards model-based estimation of the cardiac
+ electromechanical activity from ECG signals and 4D images},
+ Volume = {12},
+ Year = {2003}
+}
+
+@Article{ sermesant2012crt,
+ Title = {Patient-specific electromechanical models of the heart for
+ the prediction of pacing acute effects in CRT: a
+ preliminary clinical validation},
+ Author = {Sermesant, Maxime and Chabiniok, Radomir and
+ Chinchapatnam, Phani and Mansi, Tommaso and Billet,
+ Florence and Moireau, Philippe and Peyrat, Jean-Marc and
+ Wong, K and Relan, Jatin and Rhode, Kawal and others},
+ Journal = {Medical image analysis},
+ Volume = {16},
+ Number = {1},
+ Pages = {201--215},
+ Year = {2012},
+ Publisher = {Elsevier}
+}
+
+@Article{ sermesant2012media,
+ Title = {Patient-specific electromechanical models of the heart for
+ the prediction of pacing acute effects in {CRT}: A
+ preliminary clinical validation},
+ Author = {Sermesant, M. and Chabiniok, R. and Chinchapatnam, P. and
+ Mansi, T. and Billet, F. and Moireau, P. and Peyrat, J.M.
+ and Wong, K. and Relan, J. and Rhode, K. and Ginks, M. and
+ Lambiase, P. and Delingette, H. and Sorine, M. and Rinaldi,
+ C.A. and Chapelle, D. and Razavi, R. and Ayache, N.},
+ Journal = {Medical Image Analysis},
+ Year = {2012},
+ Month = jan,
+ Number = {1},
+ Pages = {201--215},
+ Volume = {16},
+ DOI = {10.1016/j.media.2011.07.003},
+ File = {Sermesant2012.pdf:/home/hoermann/.zotero/zotero/krpbc0h6.default/zotero/storage/Z7FKWGTJ/Sermesant2012.pdf:application/pdf},
+ ISSN = {13618415},
+ Keywords = {{CRT}},
+ Language = {en},
+ ShortTitle = {Patient-specific electromechanical models of the heart for
+ the prediction of pacing acute effects in {CRT}},
+ URL = {http://linkinghub.elsevier.com/retrieve/pii/S1361841511001009},
+ URLDate = {2014-11-27}
+}
+
+@Book{ serre-96,
+ Author = {Serre, D.},
+ Publisher = {Diderot Editeur, Paris},
+ Title = {Syst{\`e}mes de lois de conservation. {I \& II}},
+ Year = {1996}
+}
+
+###Book{ serre-96,
+ Author = {Serre, D.},
+ Publisher = {Diderot Editeur, Paris},
+ Title = {Syst{\`e}mes de lois de conservation. {I \& II}},
+ Year = {1996}
+}
+
+@Article{ shi-lawford-hose-11,
+ Author = {Shi, Y. and Lawford, P. and Hose, R.},
+ Journal = {Biomed Eng Online},
+ Pages = {33},
+ Title = {Review of zero-D and 1-D models of blood flow in the
+ cardiovascular system},
+ Volume = {10},
+ Year = {2011}
+}
+
+###Article{ shi-lawford-hose-11,
+ Author = {Shi, Y. and Lawford, P. and Hose, R.},
+ Journal = {Biomed Eng Online},
+ Pages = {33},
+ Title = {Review of zero-D and 1-D models of blood flow in the
+ cardiovascular system},
+ Volume = {10},
+ Year = {2011}
+}
+
+@Article{ shi_patient-specific_2019,
+ langid = {english},
+ Title = {Patient-Specific Non-Invasive Estimation of Pressure
+ Gradient across Aortic Coarctation Using Magnetic Resonance
+ Imaging},
+ ISSN = {09145087},
+ URL = {https://linkinghub.elsevier.com/retrieve/pii/S0914508718303691},
+ DOI = {10.1016/j.jjcc.2018.12.016},
+ JournalTitle = {Journal of Cardiology},
+ URLDate = {2019-02-04},
+ Year = {2019-01},
+ Author = {Shi, Yubing and Valverde, Israel and Lawford, Patricia V.
+ and Beerbaum, Philipp and Hose, D. Rodney}
+}
+
+@Article{ si2008adaptive,
+ Title = {Adaptive tetrahedral mesh generation by constrained
+ Delaunay refinement},
+ Author = {Si, Hang},
+ Journal = {International Journal for Numerical Methods in
+ Engineering},
+ Volume = {75},
+ Number = {7},
+ Pages = {856--880},
+ Year = {2008},
+ Publisher = {Wiley Online Library}
+}
+
+@Article{ simo-armero-taylor-95,
+ Author = {Simo, J.C. and Armero, F. and Taylor, C.A.},
+ Journal = {Int. Jour. Num. Meth. Eng.},
+ Pages = {1475-1506},
+ Title = {Stable and time-dissipative finite element methods for the
+ incompressible {Navier-Stokes} equations in advection
+ dominated flows},
+ Volume = {38},
+ Year = {1995}
+}
+
+###Article{ simo-armero-taylor-95,
+ Author = {Simo, J.C. and Armero, F. and Taylor, C.A.},
+ Journal = {Int. Jour. Num. Meth. Eng.},
+ Pages = {1475-1506},
+ Title = {Stable and time-dissipative finite element methods for the
+ incompressible {Navier-Stokes} equations in advection
+ dominated flows},
+ Volume = {38},
+ Year = {1995}
+}
+
+@Article{ simo-fox-rifai-89,
+ Author = {Simo, J.C and Fox, D.D and Rifai, M.S},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Pages = {267-304},
+ Title = {On a stress resultant geometrically exact shell model,
+ {Part I} : Formulation and optimal parametrization},
+ Volume = {72},
+ Year = {1989}
+}
+
+###Article{ simo-fox-rifai-89,
+ Author = {Simo, J.C and Fox, D.D and Rifai, M.S},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Pages = {267-304},
+ Title = {On a stress resultant geometrically exact shell model,
+ {Part I} : Formulation and optimal parametrization},
+ Volume = {72},
+ Year = {1989}
+}
+
+@Book{ simon-06,
+ Title = {{Optimal state estimation: Kalman, H infinity, and
+ nonlinear approaches}},
+ Author = {Simon, D.},
+ ISBN = {0470045337},
+ Year = {2006},
+ Publisher = {Wiley-Interscience}
+}
+
+###Book{ simon-06,
+ Title = {{Optimal state estimation: Kalman, H infinity, and
+ nonlinear approaches}},
+ Author = {Simon, D.},
+ ISBN = {0470045337},
+ Year = {2006},
+ Publisher = {Wiley-Interscience}
+}
+
+@Unpublished{ simon-09,
+ Author = {Simon, D.},
+ Note = {IET Control Theory \& Applications, accepted for
+ publication},
+ Title = {Kalman Filtering with State Constraints: A Survey of
+ Linear and Nonlinear Algorithms},
+ Year = {2009}
+}
+
+###Unpublished{ simon-09,
+ Author = {Simon, D.},
+ Note = {IET Control Theory \& Applications, accepted for
+ publication},
+ Title = {Kalman Filtering with State Constraints: A Survey of
+ Linear and Nonlinear Algorithms},
+ Year = {2009}
+}
+
+@Article{ simoons1986jacc,
+ Title = {Early thrombolysis in acute myocardial infarction:
+ Limitation of infarct size and improved survival},
+ Author = {Simoons, Maarten L. and Serruys, Patrick W. and van den
+ Brand, Marcel and Res, Jan and Verheugt, Freek W.A. and
+ Krauss, X. Hanno and Remme, Willem J. and Bär, Frits and
+ Zwaan, Chris de and Laarse, Arnoud van der and Vermeer,
+ Frank and Lubsen, Jacobus},
+ Journal = {Journal of the American College of Cardiology},
+ Year = {1986},
+ Number = {4},
+ Pages = {717-728},
+ Volume = {7},
+ DOI = {10.1016/S0735-1097(86)80329-1},
+ EPrint = {/data/Journals/JAC/22724/03291.pdf},
+ File = {simoons86.pdf:simoons86.pdf:PDF},
+ timestamp = {2015/09/13},
+ URL = { + http://dx.doi.org/10.1016/S0735-1097(86)80329-1}
+}
+
+@Article{ singh-2002,
+ Author = {Balbir Singh},
+ Journal = {Indian Pacing Electrophysioly Journal},
+ Title = {Biventricular pacing in congestive heart failure},
+ Volume = {2},
+ Year = {2002}
+}
+
+###Article{ singh-2002,
+ Author = {Balbir Singh},
+ Journal = {Indian Pacing Electrophysioly Journal},
+ Title = {Biventricular pacing in congestive heart failure},
+ Volume = {2},
+ Year = {2002}
+}
+
+###Article{ singh-2002,
+ Author = {Balbir Singh},
+ Journal = {Indian Pacing Electrophysioly Journal},
+ Title = {Biventricular pacing in congestive heart failure},
+ Volume = {2},
+ Year = {2002}
+}
+
+###Article{ singh-2002,
+ Author = {Balbir Singh},
+ Journal = {Indian Pacing Electrophysioly Journal},
+ Title = {Biventricular pacing in congestive heart failure},
+ Volume = {2},
+ Year = {2002}
+}
+
+@InCollection{ skalak-81,
+ Annote = {blood, red cell},
+ Author = {Skalak, R.},
+ BookTitle = {Mathematical aspects of physiology (Proc. Summer Sem.,
+ Univ. Utah, Salt Lake City, Utah, 1980)},
+ code = {cel8},
+ Pages = {109--139},
+ Publisher = {Amer. Math. Soc.},
+ Series = {Lectures in Appl. Math.},
+ Title = {Blood rheology},
+ Volume = {19},
+ Year = {1981}
+}
+
+###InCollection{ skalak-81,
+ Annote = {blood, red cell},
+ Author = {Skalak, R.},
+ BookTitle = {Mathematical aspects of physiology (Proc. Summer Sem.,
+ Univ. Utah, Salt Lake City, Utah, 1980)},
+ code = {cel8},
+ Pages = {109--139},
+ Publisher = {Amer. Math. Soc.},
+ Series = {Lectures in Appl. Math.},
+ Title = {Blood rheology},
+ Volume = {19},
+ Year = {1981}
+}
+
+@Article{ skalak-zarda-jan-chien-81,
+ Annote = {blood, red cell, rouleau, adhesion},
+ Author = {Skalak, R. and Zarda, P.R. and Jan, K.-M. and Chien, S.},
+ code = {cel10},
+ Journal = {Biophys. J.},
+ Pages = {771-781},
+ Title = {Mechanics of rouleau formation},
+ Volume = {35},
+ Year = {1981}
+}
+
+###Article{ skalak-zarda-jan-chien-81,
+ Annote = {blood, red cell, rouleau, adhesion},
+ Author = {Skalak, R. and Zarda, P.R. and Jan, K.-M. and Chien, S.},
+ code = {cel10},
+ Journal = {Biophys. J.},
+ Pages = {771-781},
+ Title = {Mechanics of rouleau formation},
+ Volume = {35},
+ Year = {1981}
+}
+
+@Article{ smith-hunter-2002,
+ Author = {Smith, N.P. and Mulquiney, P.J. and Nash, M.P. and
+ Bradley, C.P. and Nickerson, D.P. and Hunter, P.J.},
+ Journal = {Chaos, Solitons and Fractals},
+ Pages = {1613-1621},
+ Title = {Mathematical modelling of the heart: cell to organ},
+ Volume = {13},
+ Year = {2002}
+}
+
+###Article{ smith-hunter-2002,
+ Author = {Smith, N.P. and Mulquiney, P.J. and Nash, M.P. and
+ Bradley, C.P. and Nickerson, D.P. and Hunter, P.J.},
+ Journal = {Chaos, Solitons and Fractals},
+ Pages = {1613-1621},
+ Title = {Mathematical modelling of the heart: cell to organ},
+ Volume = {13},
+ Year = {2002}
+}
+
+@Article{ smith-pullan-hunter-2002,
+ Author = {Smith, N.P. and Pullan, A.J. and Hunter, P.J.},
+ Journal = {SIAM J. Appl. Math.},
+ Number = {3},
+ Pages = {990-1018},
+ Title = {An anatomically based model of transient coronary blood
+ flow in the heart},
+ Volume = {62},
+ Year = {2002}
+}
+
+###Article{ smith-pullan-hunter-2002,
+ Author = {Smith, N.P. and Pullan, A.J. and Hunter, P.J.},
+ Journal = {SIAM J. Appl. Math.},
+ Number = {3},
+ Pages = {990-1018},
+ Title = {An anatomically based model of transient coronary blood
+ flow in the heart},
+ Volume = {62},
+ Year = {2002}
+}
+
+@Article{ smith2002,
+ Title = "Mathematical modelling of the heart: cell to organ",
+ Journal = "Chaos, Solitons \& Fractals",
+ Volume = "13",
+ Number = "8",
+ Pages = "1613 - 1621",
+ Year = "2002",
+ Note = "Virtual Tissue Engineering of Cardiac
+ Muscle",
+ ISSN = "0960-0779",
+ DOI = "10.1016/S0960-0779(01)00170-9",
+ Author = "N.P Smith and P.J Mulquiney and M.P Nash and C.P Bradley
+ and D.P Nickerson and P.J Hunter"
+}
+
+@Article{ sneyd-02,
+ Author = {Sneyd, A.D.},
+ code = {mhd42},
+ Journal = {Eur. J. Mech. B/Fluids},
+ Pages = {247-263},
+ Title = {Analysis of parametric resonance in magnetohydrodynamics},
+ Volume = {21},
+ Year = {2002}
+}
+
+###Article{ sneyd-02,
+ Author = {Sneyd, A.D.},
+ code = {mhd42},
+ Journal = {Eur. J. Mech. B/Fluids},
+ Pages = {247-263},
+ Title = {Analysis of parametric resonance in magnetohydrodynamics},
+ Volume = {21},
+ Year = {2002}
+}
+
+@Article{ sneyd-85,
+ Annote = {mhd, aluminium},
+ Author = {Sneyd, A.D.},
+ Journal = {J. Fluid Mech.},
+ Pages = {223--236},
+ Title = {Stability of fluid layers carrying a normal electric
+ current},
+ Volume = {156},
+ Year = {1985}
+}
+
+###Article{ sneyd-85,
+ Annote = {mhd, aluminium},
+ Author = {Sneyd, A.D.},
+ Journal = {J. Fluid Mech.},
+ Pages = {223--236},
+ Title = {Stability of fluid layers carrying a normal electric
+ current},
+ Volume = {156},
+ Year = {1985}
+}
+
+@Article{ sneyd-92,
+ Annote = {mhd, aluminium},
+ Author = {Sneyd, A.D.},
+ Journal = {J. Fluid Mech.},
+ Pages = {111--126},
+ Title = {Interfacial instabilities in aluminium reduction cells},
+ Volume = {236},
+ Year = {1992}
+}
+
+###Article{ sneyd-92,
+ Annote = {mhd, aluminium},
+ Author = {Sneyd, A.D.},
+ Journal = {J. Fluid Mech.},
+ Pages = {111--126},
+ Title = {Interfacial instabilities in aluminium reduction cells},
+ Volume = {236},
+ Year = {1992}
+}
+
+@Article{ sneyd-wang-94,
+ Author = {Sneyd, A.D. and Wang, A.},
+ Journal = {J. Fluid Mech.},
+ Pages = {343-359},
+ Title = {Interfacial instability due to MHD mode coupling in
+ aluminium reduction cells},
+ Volume = {263},
+ Year = {1994}
+}
+
+###Article{ sneyd-wang-94,
+ Author = {Sneyd, A.D. and Wang, A.},
+ Journal = {J. Fluid Mech.},
+ Pages = {343-359},
+ Title = {Interfacial instability due to MHD mode coupling in
+ aluminium reduction cells},
+ Volume = {263},
+ Year = {1994}
+}
+
+@Article{ solon1,
+ Author = {Solonnikov, V. A.},
+ Journal = {Math. USSR Izvestiya},
+ Number = {2},
+ Pages = {381-405},
+ Title = {On the transient motion of an isolated volume of viscous
+ incompressible fluid},
+ Volume = {31},
+ Year = {1988}
+}
+
+###Article{ solon1,
+ Author = {Solonnikov, V. A.},
+ Journal = {Math. USSR Izvestiya},
+ Number = {2},
+ Pages = {381-405},
+ Title = {On the transient motion of an isolated volume of viscous
+ incompressible fluid},
+ Volume = {31},
+ Year = {1988}
+}
+
+@Article{ solon2,
+ Author = {Solonnikov, V. A.},
+ Journal = {Leningrad Math. J.},
+ Number = {1},
+ Pages = {227-276},
+ Title = {On nonstationary motion of a finite isolated mass of
+ selfgravitating fluid},
+ Volume = {1},
+ Year = {1990}
+}
+
+###Article{ solon2,
+ Author = {Solonnikov, V. A.},
+ Journal = {Leningrad Math. J.},
+ Number = {1},
+ Pages = {227-276},
+ Title = {On nonstationary motion of a finite isolated mass of
+ selfgravitating fluid},
+ Volume = {1},
+ Year = {1990}
+}
+
+@Article{ solon4,
+ Author = {Solonnikov, V. A.},
+ Journal = {Math. USSR Izv.},
+ Number = {6},
+ Pages = {1323-1358},
+ Title = {Solvability of a problem of on the motion of a viscous
+ incompressible fluid bounded by a free surface},
+ Volume = {11},
+ Year = {1977}
+}
+
+###Article{ solon4,
+ Author = {Solonnikov, V. A.},
+ Journal = {Math. USSR Izv.},
+ Number = {6},
+ Pages = {1323-1358},
+ Title = {Solvability of a problem of on the motion of a viscous
+ incompressible fluid bounded by a free surface},
+ Volume = {11},
+ Year = {1977}
+}
+
+@Article{ solon5,
+ Author = {Solonnikov, V. A.},
+ Journal = {Jour. Sov. Math},
+ Pages = {223-228},
+ Title = {Solvability of the problem of evolution of an isolated
+ volume of viscous, incompressible capillary fluid},
+ Volume = {32},
+ Year = {1986}
+}
+
+###Article{ solon5,
+ Author = {Solonnikov, V. A.},
+ Journal = {Jour. Sov. Math},
+ Pages = {223-228},
+ Title = {Solvability of the problem of evolution of an isolated
+ volume of viscous, incompressible capillary fluid},
+ Volume = {32},
+ Year = {1986}
+}
+
+@Article{ solon6,
+ Author = {Solonnikov, V. A.},
+ Journal = {Jour. Sov. Math.},
+ Pages = {672-686},
+ Title = {Unsteady motion of a finite mass of fluid, bounded by a
+ free surface},
+ Volume = {40},
+ Year = {1988}
+}
+
+###Article{ solon6,
+ Author = {Solonnikov, V. A.},
+ Journal = {Jour. Sov. Math.},
+ Pages = {672-686},
+ Title = {Unsteady motion of a finite mass of fluid, bounded by a
+ free surface},
+ Volume = {40},
+ Year = {1988}
+}
+
+@Article{ solon7,
+ Author = {Solonnikov, V. A.},
+ Journal = {Math. USSR Izv.},
+ Number = {2},
+ Pages = {381-405},
+ Title = {Unsteady motion of an isolated volume of a viscous
+ incompressible fluid},
+ Volume = {31},
+ Year = {1988}
+}
+
+###Article{ solon7,
+ Author = {Solonnikov, V. A.},
+ Journal = {Math. USSR Izv.},
+ Number = {2},
+ Pages = {381-405},
+ Title = {Unsteady motion of an isolated volume of a viscous
+ incompressible fluid},
+ Volume = {31},
+ Year = {1988}
+}
+
+@Article{ solonnikov-87,
+ Author = {Solonnikov, V. A.},
+ Journal = {Vestnik Leningrad Univ. Mat. Mekh. Astro.},
+ Pages = {49-55},
+ Title = {Evolution of an isolated volume of a viscous
+ incompressible capillary fluid for large time values
+ (Russian)},
+ Volume = {3},
+ Year = {1987}
+}
+
+###Article{ solonnikov-87,
+ Author = {Solonnikov, V. A.},
+ Journal = {Vestnik Leningrad Univ. Mat. Mekh. Astro.},
+ Pages = {49-55},
+ Title = {Evolution of an isolated volume of a viscous
+ incompressible capillary fluid for large time values
+ (Russian)},
+ Volume = {3},
+ Year = {1987}
+}
+
+@Article{ sommer20123d,
+ Title = {3D constitutive modeling of the biaxial mechanical
+ response of intact and layer-dissected human carotid
+ arteries.},
+ Author = {Sommer, G. and Holzapfel, G.A.},
+ Journal = {J Mech Behav Biomed Mater},
+ Volume = {5},
+ Number = {1},
+ Pages = {116-28},
+ Year = {2012},
+ Abstract = {Human arteries with non-atherosclerotic intimal thickening
+ consist of three distinct layers: adventitia, media and
+ intima. From a series of axial extension and inflation
+ tests on intact and layer-dissected human carotid arteries
+ (adventitia and media-intima composite), a 3D
+ structurally-based strain-energy function (SEF) is
+ calibrated, and a set of five material parameters is
+ identified which is not yet available in the literature.
+ The zero-stress states of the artery tubes investigated are
+ considered in the calibration process, and the related
+ kinematics for the finite deformation of the individual
+ continuum are described in detail. The SEF employed is
+ capable of describing the different mechanical properties
+ of the intact and layer-dissected tissue tubes (arterial
+ segments) investigated at different pressure domains and
+ axial stretches. The correlation coefficients and error
+ measures determined indicate good correlation between the
+ model and the experimental data for all tested tubes. Mean
+ values of each individual material parameter provide a kind
+ of 'master model' that characterizes the mean response of
+ all mechanical data obtained from the human carotid
+ arteries. The material parameters and the 3D constitutive
+ model serve as a foundation for finite element simulations,
+ and hence the analysis of more complex patient-specific
+ boundary-value problems in the human carotid physiology and
+ pathology. }
+}
+
+@Article{ sonesson-94,
+ Author = {Sonesson, B. and L\"anne, T. and Vernersson, E. and
+ Hansen, F.},
+ Title = {Sex difference in the mechanical properties of the
+ abdominal aorta in human beings.},
+ Journal = {Journal of Vascular Surgery},
+ Volume = {20},
+ Year = {1994},
+ Number = {6},
+ Pages = {959-69},
+ pubmedid = {7990192},
+ ISSN = {0741-5214}
+}
+
+###Article{ sonesson-94,
+ Author = {Sonesson, B. and L\"anne, T. and Vernersson, E. and
+ Hansen, F.},
+ Title = {Sex difference in the mechanical properties of the
+ abdominal aorta in human beings.},
+ Journal = {Journal of Vascular Surgery},
+ Volume = {20},
+ Year = {1994},
+ Number = {6},
+ Pages = {959-69},
+ URL = {http://www.biomedsearch.com/nih/Sex-difference-in-mechanical-properties/7990192.html},
+ pubmedid = {7990192},
+ ISSN = {0741-5214}
+}
+
+@Article{ song_computation_1991,
+ Title = {Computation of 3-{{D}} Velocity Fields from 3-{{D}} Cine
+ {{CT}} Images of a Human Heart},
+ Volume = {10},
+ Number = {3},
+ JournalTitle = {IEEE transactions on medical imaging},
+ Year = {1991},
+ Pages = {295--306},
+ Author = {Song, Samuel M. and Leahy, Richard M.}
+}
+
+@Article{ song_determining_1994,
+ Title = {Determining Cardiac Velocity Fields and Intraventricular
+ Pressure Distribution from a Sequence of Ultrafast {{CT}}
+ Cardiac Images},
+ Volume = {13},
+ Number = {2},
+ JournalTitle = {IEEE transactions on medical imaging},
+ Year = {1994},
+ Pages = {386--397},
+ Author = {Song, Samuel M. and Leahy, Richard M. and Boyd, Douglas P.
+ and Brundage, Bruce H. and Napel, Sandy}
+}
+
+@Article{ sosnovik2009cci,
+ Title = {Diffusion spectrum MRI tractography reveals the presence
+ of a complex network of residual myofibers in infarcted
+ myocardium.},
+ Author = {Sosnovik, David E. and Wang, Ruopeng and Dai, Guangping
+ and Wang, Teresa and Aikawa, Elena and Novikov, Mikhael and
+ Rosenzweig, Anthony and Gilbert, Richard J. and Wedeen, Van
+ J.},
+ Journal = {Circ Cardiovasc Imaging},
+ Year = {2009},
+ Month = {May},
+ Number = {3},
+ Pages = {206--212},
+ Volume = {2},
+ Abstract = {Changes in myocardial microstructure are important
+ components of the tissue response to infarction but are
+ difficult to resolve with current imaging techniques. A
+ novel technique, diffusion spectrum MRI tractography (DSI
+ tractography), was thus used to image myofiber architecture
+ in normal and infarcted myocardium. Unlike diffusion tensor
+ imaging, DSI tractography resolves multiple myofiber
+ populations per voxel, thus generating accurate 3D
+ tractograms, which we present in the myocardium for the
+ first time.DSI tractography was performed at 4.7 T in
+ excised rat hearts 3 weeks after left coronary artery
+ ligation (n=4) and in 4 age-matched controls. Fiber
+ architecture in the control hearts varied smoothly from
+ endocardium to epicardium, producing a symmetrical array of
+ crossing helical structures in which orthogonal myofibers
+ were separated by fibers with intermediate helix angles.
+ Fiber architecture in the infarcted hearts was severely
+ perturbed. The infarct boundary in all cases was highly
+ irregular and punctuated repeatedly by residual myofibers
+ extending from within the infarct to the border zones. In
+ all infarcts, longitudinal myofibers extending toward the
+ basal-anterior wall and transversely oriented myofibers
+ extending toward the septum lay in direct contact with each
+ other, forming nodes of orthogonal myofiber intersection or
+ contact.DSI tractography resolves 3D myofiber architecture
+ and reveals a complex network of orthogonal myofibers
+ within infarcted myocardium. Meshlike networks of
+ orthogonal myofibers in infarcted myocardium may resist
+ mechanical remodeling but also probably increase the risk
+ for lethal reentrant arrhythmias. DSI tractography thus
+ provides a new and important readout of tissue injury after
+ myocardial infarction.},
+ DOI = {10.1161/CIRCIMAGING.108.815050},
+ Institution = {Martinos Center for Biomedical Imaging, Department of
+ Radiology, Massachusetts General Hospital, Harvard Medical
+ School, Boston, Mass., USA. sosnovik@nmr.mgh.harvard.edu},
+ Keywords = {Animals; Diffusion Magnetic Resonance Imaging; Disease
+ Models, Animal; Image Interpretation, Computer-Assisted;
+ Imaging, Three-Dimensional; Myocardial Infarction,
+ pathology; Myocardium, pathology; Myofibrils, pathology;
+ Rats; Rats, Sprague-Dawley},
+ Language = {eng},
+ medline-pst = {ppublish},
+ owner = {stoeckc},
+ pii = {CIRCIMAGING.108.815050},
+ pmid = {19808594},
+ timestamp = {2015.07.24},
+ URL = {http://dx.doi.org/10.1161/CIRCIMAGING.108.815050}
+}
+
+@Article{ sotelo_3d_2016,
+ Title = {{{3D}} Quantification of Wall Shear Stress and Oscillatory
+ Shear Index Using a Finite-Element Method in {{3D CINE
+ PC}}-{{MRI}} Data of the Thoracic Aorta},
+ Author = {Sotelo, Julio and Urbina, Jesus and Valverde, Israel and
+ Tejos, Cristian and Irarr{\'a}zaval, Pablo and Andia,
+ Marcelo E. and Uribe, Sergio and Hurtado, Daniel E.},
+ Year = {2016},
+ Volume = {35},
+ Pages = {1475--1487},
+ Journal = {IEEE transactions on medical imaging},
+ Number = {6}
+}
+
+@Article{ sotelo_pressure_2015,
+ langid = {english},
+ Title = {Pressure Gradient Prediction in Aortic Coarctation Using a
+ Computational-Fluid-Dynamics Model: Validation against
+ Invasive Pressure Catheterization at Rest and
+ Pharmacological Stress},
+ Volume = {17},
+ ISSN = {1532-429X},
+ URL = {https://jcmr-online.biomedcentral.com/articles/10.1186/1532-429X-17-S1-Q78},
+ DOI = {10.1186/1532-429X-17-S1-Q78},
+ ShortTitle = {Pressure Gradient Prediction in Aortic Coarctation Using a
+ Computational-Fluid-Dynamics Model},
+ Number = {S1},
+ JournalTitle = {Journal of Cardiovascular Magnetic Resonance},
+ URLDate = {2019-01-29},
+ Year = {2015-12},
+ Author = {Sotelo, Julio A and Valverde, Israel and Beerbaum, Philipp
+ B and Greil, Gerald F and Schaeffter, Tobias and Razavi,
+ Reza and Hurtado, Daniel E and Uribe, Sergio and Figueroa,
+ Carlos A}
+}
+
+@Article{ sotelo_three-dimensional_2018,
+ Title = {Three-Dimensional Quantification of Vorticity and Helicity
+ from {{3D}} Cine {{PC}}-{{MRI}} Using Finite-Element
+ Interpolations},
+ Author = {Sotelo, Julio and Urbina, Jes{\'u}s and Valverde, Israel
+ and Mura, Joaqu{\'i}n and Tejos, Cristi{\'a}n and
+ Irarrazaval, Pablo and Andia, Marcelo E. and Hurtado,
+ Daniel E. and Uribe, Sergio},
+ Year = {2018},
+ Volume = {79},
+ Pages = {541--553},
+ Journal = {Magnetic resonance in medicine},
+ Number = {1}
+}
+
+@Article{ soulaimani-fortin-dhatt-ouellet-91,
+ Author = {Soula{\"\i}mani, A. and Fortin, M. and Dhatt, G. and
+ Ouellet, Y.},
+ code = {mob3},
+ Journal = {Comp. Meth. Appl. Mech. Engng},
+ Pages = {265-296},
+ Title = {Finite element simulation of two- and three dimensional
+ free surface flows},
+ Volume = {86},
+ Year = {1991}
+}
+
+###Article{ soulaimani-fortin-dhatt-ouellet-91,
+ Author = {Soula{\"\i}mani, A. and Fortin, M. and Dhatt, G. and
+ Ouellet, Y.},
+ code = {mob3},
+ Journal = {Comp. Meth. Appl. Mech. Engng},
+ Pages = {265-296},
+ Title = {Finite element simulation of two- and three dimensional
+ free surface flows},
+ Volume = {86},
+ Year = {1991}
+}
+
+@Article{ soulaimani-saad-98,
+ Author = {Soula{\" {\i}}mani, A. and Saad, Y.},
+ code = {mob4},
+ Journal = {Comput. Meth Appl. Mech Engrg.},
+ Pages = {79-106},
+ Title = {An arbitrary {Lagrangian-Eulerian} finite element method
+ for solving three-dimensional free surface flows},
+ Volume = {162},
+ Year = {1998}
+}
+
+###Article{ soulaimani-saad-98,
+ Author = {Soula{\" {\i}}mani, A. and Saad, Y.},
+ code = {mob4},
+ Journal = {Comput. Meth Appl. Mech Engrg.},
+ Pages = {79-106},
+ Title = {An arbitrary {Lagrangian-Eulerian} finite element method
+ for solving three-dimensional free surface flows},
+ Volume = {162},
+ Year = {1998}
+}
+
+@Article{ soyibou-murea-08,
+ Author = {Soyibou, S. and Murea, C.M.},
+ DOI = {DOI: 10.1016/j.cma.2008.07.010},
+ ISSN = {0045-7825},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Number = {2},
+ Pages = {210 - 222},
+ Title = {A stable time advancing scheme for solving fluid-structure
+ interaction problem at small structural displacements},
+ Volume = {198},
+ Year = {2008}
+}
+
+###Article{ soyibou-murea-08,
+ Author = {Soyibou, S. and Murea, C.M.},
+ DOI = {DOI: 10.1016/j.cma.2008.07.010},
+ ISSN = {0045-7825},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Number = {2},
+ Pages = {210 - 222},
+ Title = {A stable time advancing scheme for solving fluid-structure
+ interaction problem at small structural displacements},
+ Volume = {198},
+ Year = {2008},
+ bdsk-url-1 = {http://dx.doi.org/10.1016/j.cma.2008.07.010}
+}
+
+@Article{ spilker2010tuning,
+ Title = {Tuning multidomain hemodynamic simulations to match
+ physiological measurements},
+ Author = {Spilker, Ryan L and Taylor, Charles A},
+ Journal = {Annals of biomedical engineering},
+ Volume = {38},
+ Number = {8},
+ Pages = {2635--2648},
+ Year = {2010},
+ Publisher = {Springer}
+}
+
+@Article{ stalhand-09,
+ Author = {Stalhand, J.},
+ Journal = {Biomechanics and Modeling in Mechanobiology},
+ Number = {2},
+ Pages = {141-148},
+ Title = {Determination of human arterial wall parameters from
+ clinical data},
+ Volume = {8},
+ Year = {2009}
+}
+
+@Article{ stein-benney-eal-00,
+ Author = {Stein, K. and Benney, R. and Kalro, V. and Tezduyar, T.E.
+ and Leonard, J. and Accorsi, M.},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Number = {3--4},
+ Pages = {373--386},
+ Title = {Parachute fluid-structure interactions: {3-D}
+ computation},
+ Volume = {190},
+ Year = {2000}
+}
+
+###Article{ stein-benney-eal-00,
+ Author = {Stein, K. and Benney, R. and Kalro, V. and Tezduyar, T.E.
+ and Leonard, J. and Accorsi, M.},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Number = {3--4},
+ Pages = {373--386},
+ Title = {Parachute fluid-structure interactions: {3-D}
+ computation},
+ Volume = {190},
+ Year = {2000}
+}
+
+@Article{ steinman_image-based_2002,
+ Title = {Image-Based Computational Fluid Dynamics Modeling in
+ Realistic Arterial Geometries},
+ Volume = {30},
+ Number = {4},
+ JournalTitle = {Annals of biomedical engineering},
+ Year = {2002},
+ Pages = {483--497},
+ Author = {Steinman, David A.}
+}
+
+@Article{ steinman_reconstruction_2002,
+ Title = {Reconstruction of Carotid Bifurcation Hemodynamics and
+ Wall Thickness Using Computational Fluid Dynamics and
+ {{MRI}}},
+ Volume = {47},
+ Number = {1},
+ JournalTitle = {Magnetic Resonance in Medicine: An Official Journal of the
+ International Society for Magnetic Resonance in Medicine},
+ Year = {2002},
+ Pages = {149--159},
+ Author = {Steinman, David A. and Thomas, Jonathan B. and Ladak,
+ Hanif M. and Milner, Jaques S. and Rutt, Brian K. and
+ Spence, J. David}
+}
+
+@Article{ stejskal1965jcp,
+ Title = {Use of Spin Echoes in a Pulsed Magnetic-Field Gradient to
+ Study Anisotropic, Restricted Diffusion and Flow},
+ Author = {Stejskal, E. O.},
+ Journal = {The Journal of Chemical Physics},
+ Year = {1965},
+ Number = {10},
+ Pages = {3597},
+ Volume = {43},
+ DOI = {10.1063/1.1696526},
+ ISSN = {00219606},
+ Language = {en},
+ owner = {david},
+ timestamp = {2015-05-12 18:30:54},
+ URL = {http://scitation.aip.org/content/aip/journal/jcp/43/10/10.1063/1.1696526},
+ URLDate = {2015-05-12}
+}
+
+@Article{ stejskal1965spin,
+ Author = {Stejskal, EO and Tanner, JE},
+ Title = {Spin diffusion measurements: spin echoes in the presence
+ of a time-dependent field gradient},
+ Journal = {{The Journal of Chemical Physics}},
+ Year = {1965},
+ Volume = {42},
+ Pages = {288--292},
+ Number = {1},
+ Keywords = {DTMRI - general},
+ Publisher = {AIP Publishing}
+}
+
+@Article{ stenberg09,
+ Author = "Juntunen, M. and Stenberg, R.",
+ Title = "{Nitsche's Method for General Boundary Conditions}",
+ Journal = {Math. Comp.},
+ fjournal = {Mathematics of Computation},
+ Volume = "78",
+ Number = "267",
+ Pages = "1353--1374",
+ Year = "2009"
+}
+
+###Article{ stenberg09,
+ Author = "Juntunen, M. and Stenberg, R.",
+ Title = "{Nitsche's Method for General Boundary Conditions}",
+ Journal = {Math. Comp.},
+ fjournal = {Mathematics of Computation},
+ Volume = "78",
+ Number = "267",
+ Pages = "1353--1374",
+ Year = "2009"
+}
+
+@Article{ stetter-78,
+ Author = {Stetter, H.J.},
+ Journal = {Numer. Math.},
+ Pages = {425--443},
+ Title = {The defect correction principle and discretization
+ methods},
+ Volume = {29},
+ Year = {1978}
+}
+
+###Article{ stetter-78,
+ Author = {Stetter, H.J.},
+ Journal = {Numer. Math.},
+ Pages = {425--443},
+ Title = {The defect correction principle and discretization
+ methods},
+ Volume = {29},
+ Year = {1978}
+}
+
+@Article{ stoeck2014dual,
+ Title = {Dual-Phase Cardiac Diffusion Tensor Imaging with Strain
+ Correction},
+ Author = {Stoeck, , Christian T. AND Kalinowska, , Aleksandra AND
+ von Deuster, , Constantin AND Harmer, , Jack AND Chan, ,
+ Rachel W. AND Niemann, , Markus AND Manka, , Robert AND
+ Atkinson, , David AND Sosnovik, , David E. AND Mekkaoui, ,
+ Choukri AND Kozerke, , Sebastian},
+ Journal = {PLoS ONE},
+ Year = {2014},
+ Month = {09},
+ Number = {9},
+ Pages = {e107159},
+ Volume = {9},
+ Publisher = {Public Library of Science}
+}
+
+@Article{ stoeck2014po,
+ Title = {Dual-phase cardiac diffusion tensor imaging with strain
+ correction.},
+ Author = {Stoeck, Christian T. and Kalinowska, Aleksandra and {von
+ Deuster}, Constantin and Harmer, Jack and Chan, Rachel W.
+ and Niemann, Markus and Manka, Robert and Atkinson, David
+ and Sosnovik, David E. and Mekkaoui, Choukri and Kozerke,
+ Sebastian},
+ Journal = {PLoS One},
+ Year = {2014},
+ Number = {9},
+ Pages = {e107159},
+ Volume = {9},
+ Abstract = {In this work we present a dual-phase diffusion tensor
+ imaging (DTI) technique that incorporates a correction
+ scheme for the cardiac material strain, based on 3D
+ myocardial tagging.In vivo dual-phase cardiac DTI with a
+ stimulated echo approach and 3D tagging was performed in 10
+ healthy volunteers. The time course of material strain was
+ estimated from the tagging data and used to correct for
+ strain effects in the diffusion weighted acquisition. Mean
+ diffusivity, fractional anisotropy, helix, transverse and
+ sheet angles were calculated and compared between systole
+ and diastole, with and without strain correction. Data
+ acquired at the systolic sweet spot, where the effects of
+ strain are eliminated, served as a reference.The impact of
+ strain correction on helix angle was small. However, large
+ differences were observed in the transverse and sheet angle
+ values, with and without strain correction. The standard
+ deviation of systolic transverse angles was significantly
+ reduced from 35.9±3. 9° to 27.8°±3.5° (p<0.001) upon
+ strain-correction indicating more coherent fiber tracks
+ after correction. Myocyte aggregate structure was aligned
+ more longitudinally in systole compared to diastole as
+ reflected by an increased transmural range of helix angles
+ (71.8°±3.9° systole vs. 55.6°±5.6°, p<0.001
+ diastole). While diastolic sheet angle histograms had
+ dominant counts at high sheet angle values, systolic
+ histograms showed lower sheet angle values indicating a
+ reorientation of myocyte sheets during contraction.An
+ approach for dual-phase cardiac DTI with correction for
+ material strain has been successfully implemented. This
+ technique allows assessing dynamic changes in myofiber
+ architecture between systole and diastole, and emphasizes
+ the need for strain correction when sheet architecture in
+ the heart is imaged with a stimulated echo approach.},
+ DOI = {10.1371/journal.pone.0107159},
+ Institution = {Institute for Biomedical Engineering, University and ETH
+ Zurich, Zurich, Switzerland; Imaging Sciences and
+ Biomedical Engineering, King's College London, London,
+ United Kingdom.},
+ Language = {eng},
+ medline-pst = {epublish},
+ owner = {stoeckc},
+ pii = {PONE-D-14-20521},
+ pmid = {25191900},
+ timestamp = {2015.07.24},
+ URL = {http://dx.doi.org/10.1371/journal.pone.0107159}
+}
+
+@Article{ stoeck2015mrm,
+ Title = {Second-order motion-compensated spin echo diffusion tensor
+ imaging of the human heart.},
+ Author = {Stoeck, Christian T. and {von Deuster}, Constantin and
+ Genet, Martin and Atkinson, David and Kozerke, Sebastian},
+ Journal = {Magn Reson Med},
+ Year = {2015},
+ Month = {May},
+ Abstract = {Myocardial microstructure has been challenging to probe in
+ vivo. Spin echo-based diffusion-weighted sequences allow
+ for single-shot acquisitions but are highly sensitive to
+ cardiac motion. In this study, the use of second-order
+ motion-compensated diffusion encoding was compared with
+ first-order motion-compensated diffusion-weighted imaging
+ during systolic contraction of the heart.First- and
+ second-order motion-compensated diffusion encoding
+ gradients were incorporated into a triggered single-shot
+ spin echo sequence. The effect of contractile motion on the
+ apparent diffusion coefficients and tensor orientations was
+ investigated in vivo from basal to apical level of the
+ heart.Second-order motion compensation was found to
+ increase the range of systolic trigger delays from
+ 30\%-55\% to 15\%-77\% peak systole at the apex and from
+ 25\%-50\% to 15\%-79\% peak systole at the base. Diffusion
+ tensor analysis yielded more physiological transmural
+ distributions when using second-order motion-compensated
+ diffusion tensor imaging.Higher-order motion-compensated
+ diffusion encoding decreases the sensitivity to cardiac
+ motion, thereby enabling cardiac DTI over a wider range of
+ time points during systolic contraction of the heart. Magn
+ Reson Med, 2015. © 2015 Wiley Periodicals, Inc.},
+ DOI = {10.1002/mrm.25784},
+ Institution = {Division of Imaging Sciences and Biomedical Engineering,
+ King's College London, London, United Kingdom.},
+ Language = {eng},
+ medline-pst = {aheadofprint},
+ owner = {stoeckc},
+ pmid = {26033456},
+ timestamp = {2015.07.24},
+ URL = {http://dx.doi.org/10.1002/mrm.25784}
+}
+
+@Article{ stoeck2015second,
+ Author = {Stoeck, Christian T. and {von Deuster}, Constantin and
+ Genet, Martin and Atkinson, David and Kozerke, Sebastian},
+ Title = {Second-order motion-compensated spin echo diffusion tensor
+ imaging of the human heart.},
+ Journal = {Magn Reson Med},
+ Year = {2015},
+ Month = {May},
+ DOI = {10.1002/mrm.25784},
+ Institution = {Division of Imaging Sciences and Biomedical Engineering,
+ King's College London, London, United Kingdom.},
+ Keywords = {DTMRI - cardiac in-vivo},
+ Language = {eng},
+ medline-pst = {aheadofprint},
+ owner = {andreas},
+ pmid = {26033456},
+ timestamp = {2015.07.07}
+}
+
+@Book{ stoker-58,
+ Author = {Stoker, J.J.},
+ Publisher = {Wiley},
+ Title = {Water waves, the mathematical theory with applications},
+ Year = {1958}
+}
+
+###Book{ stoker-58,
+ Author = {Stoker, J.J.},
+ Publisher = {Wiley},
+ Title = {Water waves, the mathematical theory with applications},
+ Year = {1958}
+}
+
+@PhdThesis{ stoufflet-84,
+ Author = {B. Stoufflet},
+ Month = {mars},
+ School = {universit{\'e} de Paris VI},
+ Title = {R{\'e}solution num{\'e}rique des {\'e}quations d'Euler des
+ fluides parfaits compressibles par des sch{\'e}mas
+ implicites en {\'e}l{\'e}ments finis},
+ Year = {1984}
+}
+
+###PhdThesis{ stoufflet-84,
+ Author = {B. Stoufflet},
+ Month = {mars},
+ School = {universit{\'e} de Paris VI},
+ Title = {R{\'e}solution num{\'e}rique des {\'e}quations d'Euler des
+ fluides parfaits compressibles par des sch{\'e}mas
+ implicites en {\'e}l{\'e}ments finis},
+ Year = {1984}
+}
+
+@Article{ stout_2018_2018,
+ Title = {2018 {{AHA}}/{{ACC Guideline}} for the {{Management}} of
+ {{Adults With Congenital Heart Disease}}},
+ Author = {Stout, Karen K. and Daniels, Curt J. and Aboulhosn, Jamil
+ A. and Bozkurt, Biykem and Broberg, Craig S. and Colman,
+ Jack M. and Crumb, Stephen R. and Dearani, Joseph A. and
+ Fuller, Stephanie and Gurvitz, Michelle and Khairy, Paul
+ and Landzberg, Michael J. and Saidi, Arwa and Valente, Anne
+ Marie and Van Hare, George F.},
+ Year = {2018},
+ Month = aug,
+ ISSN = {07351097},
+ DOI = {10.1016/j.jacc.2018.08.1029},
+ Journal = {Journal of the American College of Cardiology},
+ Language = {en}
+}
+
+@Article{ streeter1966engineering,
+ Author = {Streeter, Daniel D and Bassett, David L},
+ Title = {An engineering analysis of myocardial fiber orientation in
+ pig's left ventricle in systole},
+ Journal = {The Anatomical Record},
+ Year = {1966},
+ Volume = {155},
+ Pages = {503--511},
+ Number = {4},
+ Publisher = {Wiley Online Library}
+}
+
+@Article{ streeter1969,
+ Author = {Streeter, D. D. and Spotnitz, H. M. and Patel, D. P. and
+ Ross, J. and Sonnenblick, E. H.},
+ Title = {Fiber Orientation in the Canine Left Ventricle during
+ Diastole and Systole},
+ Volume = {24},
+ Number = {3},
+ Pages = {339-347},
+ Year = {1969},
+ Journal = {Circulation Research}
+}
+
+@Article{ streeter1973engineering2,
+ Author = {Streeter, Daniel D. and Hanna, William T.},
+ Title = {Engineering Mechanics for Successive States in Canine Left
+ Ventricular Myocardium: II. Fiber Angle and Sarcomere
+ Length},
+ Journal = {Circulation Research},
+ Year = {1973},
+ Volume = {33},
+ Pages = {656-664},
+ Number = {6},
+ DOI = {10.1161/01.RES.33.6.656},
+ EPrint = {http://circres.ahajournals.org/content/33/6/656.full.pdf+html},
+ URL = {http://circres.ahajournals.org/content/33/6/656.abstract}
+}
+
+@Article{ streeter1979,
+ Author = {Streeter, D.D.},
+ Title = {Gross morphology and fiber geometry of the heart},
+ Journal = {Handbook of Physiology},
+ Publisher = {Williams & Wilkins},
+ Year = {1979},
+ Pages = {61-112}
+}
+
+@InCollection{ sugihara-seki_fundamentals_2016,
+ Location = {{Tokyo}},
+ Title = {Fundamentals of {{Vascular Bio}}-Fluid and {{Solid
+ Mechanics}}},
+ ISBN = {978-4-431-54800-3},
+ BookTitle = {Vascular {{Engineering}}},
+ Publisher = {{Springer}},
+ Year = {2016},
+ Pages = {13-45},
+ Author = {Sugihara-Seki, Masako and Yamada, Hiroshi}
+}
+
+@Article{ sulaiman_vitro_2008,
+ Title = {In Vitro Non-Rigid Life-Size Model of Aortic Arch Aneurysm
+ for Endovascular Prosthesis Assessment},
+ Author = {Sulaiman, Abdulrazzaq and Boussel, Lo{\^i}c and Taconnet,
+ Fr{\'e}d{\'e}ric and Serfaty, Jean Michel and Alsaid, Hasan
+ and Attia, Cherif and Huet, Laurent and Douek, Philippe},
+ Year = {2008},
+ Volume = {33},
+ Pages = {53--57},
+ Journal = {European Journal of Cardio-Thoracic Surgery},
+ Number = {1}
+}
+
+@Book{ sun-94,
+ Author = {Sun, N.Z.},
+ Publisher = {Kluwer},
+ Title = {Inverse problems in groundwater modeling},
+ Year = {1994}
+}
+
+###Book{ sun-94,
+ Author = {Sun, N.Z.},
+ Publisher = {Kluwer},
+ Title = {Inverse problems in groundwater modeling},
+ Year = {1994}
+}
+
+@Article{ sun-sun-elimelech-ryan-01,
+ Annote = {inverse problem, bacteria},
+ Author = {Sun, N. and Sun, N.-Z. and Elimelech, M. and Ryan, J. N.},
+ code = {por19},
+ Journal = {Water resources research},
+ Number = {2},
+ Pages = {209-222},
+ Title = {Sensitivity analysis and parameter identifiability for
+ colloid transport in geochemically heterogeneous porous
+ media},
+ Volume = {37},
+ Year = {2001}
+}
+
+###Article{ sun-sun-elimelech-ryan-01,
+ Annote = {inverse problem, bacteria},
+ Author = {Sun, N. and Sun, N.-Z. and Elimelech, M. and Ryan, J. N.},
+ code = {por19},
+ Journal = {Water resources research},
+ Number = {2},
+ Pages = {209-222},
+ Title = {Sensitivity analysis and parameter identifiability for
+ colloid transport in geochemically heterogeneous porous
+ media},
+ Volume = {37},
+ Year = {2001}
+}
+
+@InProceedings{ sundar2006estimating,
+ Title = {Estimating myocardial fiber orientations by template
+ warping},
+ Author = {Sundar, Hari and Shen, Dinggang and Biros, George and
+ Litt, Harold and Davatzikos, Christos},
+ BookTitle = {Biomedical Imaging: Nano to Macro, 2006. 3rd IEEE
+ International Symposium on},
+ Pages = {73--76},
+ Year = {2006},
+ Organization = {IEEE}
+}
+
+@Article{ sutton1997circ,
+ Title = {Cardiovascular Death and Left Ventricular Remodeling Two
+ Years After Myocardial Infarction: Baseline Predictors and
+ Impact of Long-term Use of Captopril: Information From the
+ Survival and Ventricular Enlargement (SAVE) Trial},
+ Author = {Sutton, Martin St. John and Pfeffer, Marc A. and Moye,
+ Lemuel and Plappert, Ted and Rouleau, Jean L. and Lamas,
+ Gervasio and Rouleau, Jacques and Parker, John O. and
+ Arnold, Malcolm O. and Sussex, Bruce and Braunwald, Eugene
+ and for the SAVE Investigators},
+ Journal = {Circulation},
+ Year = {1997},
+ Number = {10},
+ Pages = {3294-3299},
+ Volume = {96},
+ Abstract = {Background We quantified cardiovascular death and/or left
+ ventricular (LV) dilatation in patients from the SAVE trial
+ to determine whether dilatation continued beyond 1 year,
+ whether ACE inhibitor therapy attenuated late LV
+ dilatation, and whether any baseline descriptors predicted
+ late dilatation.Methods and Results Two-dimensional
+ echocardiograms were obtained in 512 patients at 11±3 days
+ and 1 and 2 years postinfarction to assess LV size,
+ percentage of the LV that was akinetic/dyskinetic (%AD),
+ and LV shape index. LV function was assessed by
+ radionuclide ejection fraction. Two hundred sixty-three
+ patients (51.4%) sustained cardiovascular death and/or LV
+ diastolic dilatation; 279 (54.5%) had cardiovascular death
+ and/or systolic dilatation. In 373 patients with serial
+ echocardiograms, LV end-diastolic and end-systolic sizes
+ increased progressively from baseline to 2 years (both
+ P<.01). More patients with LV dilatation had a decrease in
+ ejection fraction: 24.8% versus 6.8% (P<. 001) (diastole)
+ and 25.7% versus 5.3% (P<.001) (systole). Captopril
+ attenuated diastolic LV dilatation at 2 years (P=.048), but
+ this effect was carried over from the first year of therapy
+ because changes in LV size with captopril beyond 1 year
+ were similar to those with placebo. Predictors of
+ cardiovascular death and/or dilatation were age (P=.023),
+ prior infarction (P<.001), lower ejection fraction
+ (P<.001), angina (P=.007), heart failure (P=.002), LV size
+ (P<.001), and infarct size (%AD) (P<.001).Conclusions
+ Cardiovascular death and/or LV dilatation occurred in >50%
+ of patients by 2 years. LV dilatation is progressive,
+ associated with chamber distortion and deteriorating
+ function that is unaffected by captopril beyond 1 year.},
+ comments = {no pdf available... see
+ http://circ.ahajournals.org/content/96/10/3294.full},
+ DOI = {10.1161/01.CIR.96.10.3294},
+ timestamp = {2015/09/14},
+ URL = {http://circ.ahajournals.org/content/96/10/3294.abstract}
+}
+
+@Article{ sutton2000circ,
+ Title = {Left Ventricular Remodeling After Myocardial Infarction:
+ Pathophysiology and Therapy},
+ Author = {Sutton, Martin G. St. John and Sharpe, Norman},
+ Journal = {Circulation},
+ Year = {2000},
+ Number = {25},
+ Pages = {2981-2988},
+ Volume = {101},
+ DOI = {10.1161/01.CIR.101.25.2981},
+ EPrint = {http://circ.ahajournals.org/content/101/25/2981.full.pdf+html},
+ File = {sutton00.pdf:sutton00.pdf:PDF},
+ timestamp = {2014/09/17},
+ URL = {http://circ.ahajournals.org/content/101/25/2981.short}
+}
+
+@Article{ svihlova_determination_2016,
+ Title = {Determination of Pressure Data from Velocity Data with a
+ View toward Its Application in Cardiovascular Mechanics.
+ {{Part}} 1. {{Theoretical}} Considerations},
+ ISSN = {0020-7225},
+ URL = {http://www.sciencedirect.com/science/article/pii/S0020722515001858},
+ DOI = {10.1016/j.ijengsci.2015.11.002},
+ Abstract = {The non-invasive determination of the pressure (mean
+ normal stress) in a flowing fluid has ramifications in a
+ variety of important problems: the flow of blood in blood
+ vessels, flows taking place in inaccessible locations in
+ complex internal geometries that occur in mechanical
+ systems, etc. In this paper we discuss a rigorous new
+ mathematical procedure for the determination of the
+ pressure (mean normal stress) field, from data for the
+ velocity field that can be obtained through imaging
+ procedures such as 4D magnetic resonance imaging or
+ echocardiography. We then use the procedure to demonstrate
+ its efficacy by considering flows in an idealized geometry
+ with a symmetric and asymmetric obstruction. We delineate
+ the superiority of the method with regard to the methods
+ that are currently in place. In Part 2 of this two part
+ paper, we study the loss of pressure and the dissipation
+ that occurs due to the flow of blood across a diseased
+ valve (the pressure loss being an important indicator of
+ the extent of the valvular disease) as well as the flow
+ taking place in a realistic cerebral aneurysm.},
+ JournalTitle = {International Journal of Engineering Science},
+ ShortJournal = {International Journal of Engineering Science},
+ URLDate = {2016-05-23},
+ Year = {2016},
+ Author = {Švihlová, H. and Hron, J. and Málek, J. and Rajagopal, K. R. and Rajagopal, K.}
+}
+
+@Article{ swanson1974dimensions,
+ Title = {Dimensions and geometric relationships of the human aortic
+ value as a function of pressure},
+ Author = {Swanson, W. and Clark, R.},
+ Journal = {Circulation research},
+ Volume = {35},
+ Number = {6},
+ Pages = {871--882},
+ Year = {1974},
+ Publisher = {Am Heart Assoc}
+}
+
+@Article{ swynghedaww1999pr,
+ Title = {Molecular Mechanisms of Myocardial Remodeling},
+ Author = {Swynghedaww, Bernard},
+ Journal = {Physiological Reviews},
+ Year = {1999},
+ Number = {1},
+ Pages = {215--262},
+ Volume = {79},
+ Abstract = {Swynghedauw, Bernard. Molecular Mechanisms of Myocardial
+ Remodeling. Physiol. Rev. 79: 215{\textendash}262, 1999.
+ {\textemdash}
+ {\textquotedblleft}Remodeling{\textquotedblright} implies
+ changes that result in rearrangement of normally existing
+ structures. This review focuses only on permanent
+ modifications in relation to clinical dysfunction in
+ cardiac remodeling (CR) secondary to myocardial infarction
+ (MI) and/or arterial hypertension and includes a special
+ section on the senescent heart, since CR is mainly a
+ disease of the elderly. From a biological point of view, CR
+ is determined by 1 ) the general process of adaptation
+ which allows both the myocyte and the collagen network to
+ adapt to new working conditions; 2) ventricular fibrosis,
+ i.e., increased collagen concentration, which is
+ multifactorial and caused by senescence, ischemia, various
+ hormones, and/or inflammatory processes; 3) cell death, a
+ parameter linked to fibrosis, which is usually due to
+ necrosis and apoptosis and occurs in nearly all models of
+ CR. The process of adaptation is associated with various
+ changes in genetic expression, including a general
+ activation that causes hypertrophy, isogenic shifts which
+ result in the appearance of a slow isomyosin, and a new
+ Na+-K+-ATPase with a low affinity for sodium, reactivation
+ of genes encoding for atrial natriuretic fator and the
+ renin-angiotensin system, and a diminished concentration of
+ sarcoplasmic reticulum Ca2+-ATPase, ?-adrenergic receptors,
+ and the potassium channel responsible for transient outward
+ current. From a clinical point of view, fibrosis is for the
+ moment a major marker for cardiac failure and a crucial
+ determinant of myocardial heterogeneity, increasing
+ diastolic stiffness, and the propensity for reentry
+ arrhythmias. In addition, systolic dysfunction is
+ facilitated by slowing of the calcium transient and the
+ downregulation of the entire adrenergic system.
+ Modifications of intracellular calcium movements are the
+ main determinants of the triggered activity and
+ automaticity that cause arrhythmias and alterations in
+ relaxation.},
+ File = {swynghedaww99.pdf:swynghedaww99.pdf:PDF},
+ ISSN = {0031-9333},
+ Publisher = {American Physiological Society},
+ timestamp = {2015/09/13}
+}
+
+###InCollection{ tada_hemodynamics_2016,
+ Location = {{Tokyo}},
+ Title = {Hemodynamics in {{Physio}}- and {{Pathological Vessels}}},
+ ISBN = {978-4-431-54800-3},
+ BookTitle = {Vascular {{Engineering}}},
+ Publisher = {{Springer}},
+ Year = {2016},
+ Pages = {69-98},
+ Author = {Tada, Shigeru and Tarbell, John M.}
+}
+
+@Article{ taieb-moudni-benchaa-2002,
+ Author = {Taieb, J. and Moudni, T. and Foltzer, E. and et al.},
+ Journal = {Annales de cardiologie et d'ang{\'e}iologie},
+ Pages = {289-295},
+ Title = {Resynchronisation du coeur d{\'e}faillant par la
+ stimulation},
+ Volume = {51},
+ Year = {2002}
+}
+
+###Article{ taieb-moudni-benchaa-2002,
+ Author = {Taieb, J. and Moudni, T. and Foltzer, E. and et al.},
+ Journal = {Annales de cardiologie et d'ang{\'e}iologie},
+ Pages = {289-295},
+ Title = {Resynchronisation du coeur d{\'e}faillant par la
+ stimulation},
+ Volume = {51},
+ Year = {2002}
+}
+
+###Article{ taieb-moudni-benchaa-2002,
+ Author = {Taieb, J. and Moudni, T. and Foltzer, E. and et al.},
+ Journal = {Annales de cardiologie et d'ang{\'e}iologie},
+ Pages = {289-295},
+ Title = {Resynchronisation du coeur d{\'e}faillant par la
+ stimulation},
+ Volume = {51},
+ Year = {2002}
+}
+
+###Article{ taieb-moudni-benchaa-2002,
+ Author = {Taieb, J. and Moudni, T. and Foltzer, E. and et al.},
+ Journal = {Annales de cardiologie et d'ang{\'e}iologie},
+ Pages = {289-295},
+ Title = {Resynchronisation du coeur d{\'e}faillant par la
+ stimulation},
+ Volume = {51},
+ Year = {2002}
+}
+
+@Article{ talagrand_assimilation_1997,
+ Title = {Assimilation of Observations, an Introduction (Gtspecial
+ Issueltdata Assimilation in Meteology and Oceanography:
+ {{Theory}} and Practice)},
+ Volume = {75},
+ ShortTitle = {Assimilation of Observations, an Introduction (Gtspecial
+ Issueltdata Assimilation in Meteology and Oceanography},
+ Issue = {1B},
+ JournalTitle = {Journal of the Meteorological Society of Japan. Ser. II},
+ Year = {1997},
+ Pages = {191--209},
+ Author = {Talagrand, Olivier}
+}
+
+@Book{ talktalk,
+ Title = {{Circulatory system}},
+ Author = {{Talk Talk Encyclopaedia}},
+ Year = {2011}
+}
+
+###Book{ talktalk,
+ Title = {{Circulatory system}},
+ Author = {{Talk Talk Encyclopaedia}},
+ Address = {\url{http://www.talktalk.co.uk/reference/encyclopaedia/hutchinson/m0006777.html}},
+ Year = {2011}
+}
+
+@Article{ tam-69,
+ Annote = {porous, darcy},
+ Author = {Tam, C. K. W.},
+ code = {cel14},
+ Journal = {J. Fluid Mech.},
+ Pages = {537-546},
+ Title = {The drag on a cloud of sperical particles in low Reynolds
+ number flow},
+ Volume = {38},
+ Year = {1969}
+}
+
+###Article{ tam-69,
+ Annote = {porous, darcy},
+ Author = {Tam, C. K. W.},
+ code = {cel14},
+ Journal = {J. Fluid Mech.},
+ Pages = {537-546},
+ Title = {The drag on a cloud of sperical particles in low Reynolds
+ number flow},
+ Volume = {38},
+ Year = {1969}
+}
+
+@Article{ tan-et-al-08,
+ Author = {Tang, D. and Yang, C. and Mondal, S. and Liu, F. and
+ Canton, G. and Hatsukami, T.S. and Yuan, C.},
+ Journal = {J Biomech.},
+ Number = {4},
+ Pages = {727--736},
+ Title = {A negative correlation between human carotid
+ atherosclerotic plaque progression and plaque wall stress:
+ in vivo {M}{R}{I}-based 2{D}/3{D} {F}{S}{I} models},
+ Volume = {41},
+ Year = {2008}
+}
+
+###Article{ tan-et-al-08,
+ Author = {Tang, D. and Yang, C. and Mondal, S. and Liu, F. and
+ Canton, G. and Hatsukami, T.S. and Yuan, C.},
+ Journal = {J Biomech.},
+ Number = {4},
+ Pages = {727--736},
+ Title = {A negative correlation between human carotid
+ atherosclerotic plaque progression and plaque wall stress:
+ in vivo {M}{R}{I}-based 2{D}/3{D} {F}{S}{I} models},
+ Volume = {41},
+ Year = {2008}
+}
+
+@Article{ tan_comparison_2012,
+ langid = {english},
+ Title = {Comparison of {{Aortic Flow Patterns Before}} and {{After
+ Transcatheter Aortic Valve Implantation}}},
+ Volume = {3},
+ ISSN = {1869-4098},
+ URL = {https://doi.org/10.1007/s13239-011-0073-3},
+ DOI = {10.1007/s13239-011-0073-3},
+ Abstract = {Little is known of the likely changes in blood flow
+ velocity profiles and aortic wall shear stress (WSS)
+ following transcatheter aortic valve implantation (TAVI).
+ The objective of this study was to investigate the effects
+ of TAVI on flow patterns in the thoracic aorta by using
+ cardiovascular magnetic resonance imaging (CMR) and
+ computational fluid dynamics (CFD). An elderly patient with
+ aortic stenosis was examined using MRI pre- and post-TAVI,
+ and CFD simulations were carried out incorporating
+ MRI-derived patient-specific anatomy and upstream flow
+ conditions. Pre-TAVI velocity profiles demonstrated the
+ highly disturbed turbulent flow and jet impacting the wall
+ of the arch owing to the partial opening of the stenosed
+ aortic valve, with likely pathological effects. In the
+ Post-TAVI aorta, velocity profiles were similar to those of
+ healthy aortas with spatially more uniform WSS and lower
+ turbulence levels, demonstrating the favourable effects of
+ the TAVI procedure in restoring normal aortic flow. This
+ study has shown both the effectiveness of TAVI on an
+ individual patient and the advantage of the combined CMR
+ and CFD method for a comprehensive patient-specific
+ assessment of pre- and post-TAVI aortic flow patterns and
+ WSS over CMR alone.},
+ Number = {1},
+ JournalTitle = {Cardiovascular Engineering and Technology},
+ ShortJournal = {Cardiovasc Eng Tech},
+ URLDate = {2019-02-21},
+ Year = {2012-03-01},
+ Pages = {123-135},
+ Author = {Tan, F. P. P. and Xu, X. Y. and Torii, R. and Wood, N. B.
+ and Delahunty, N. and Mullen, M. and Moat, N. and
+ Mohiaddin, R.}
+}
+
+@Article{ tan_doppler_2005,
+ Title = {Doppler Echocardiographic Profile and Indexes in the
+ Evaluation of Aortic Coarctation in Patients before and
+ after Stenting},
+ Volume = {46},
+ Number = {6},
+ JournalTitle = {Journal of the American College of Cardiology},
+ Year = {2005},
+ Pages = {1045--1053},
+ Author = {Tan, Ju-Le and Babu-Narayan, Sonya V. and Henein, Michael
+ Y. and Mullen, Michael and Li, Wei}
+}
+
+@Article{ tanaka,
+ Author = {Tanaka, N.},
+ Journal = {Com. Par. Diff. Eq.},
+ Number = {1-2},
+ Pages = {41-81},
+ Title = {Global existence of two-phase non-homogeneous viscous
+ incompressible fluid flow},
+ Volume = {18},
+ Year = 1993
+}
+
+###Article{ tanaka,
+ Author = {Tanaka, N.},
+ Journal = {Com. Par. Diff. Eq.},
+ Number = {1-2},
+ Pages = {41-81},
+ Title = {Global existence of two-phase non-homogeneous viscous
+ incompressible fluid flow},
+ Volume = {18},
+ Year = 1993
+}
+
+@Article{ tang-yang-ku-99,
+ Author = {Tang, D. and Yang, J. and Yang, C. and Ku, D.N.},
+ code = {fsi11},
+ Journal = {J. Biomech. Engng.},
+ Pages = {494-501},
+ Title = {A nonlinear axisymmetric model with fluid-wall
+ interactions for steady viscous flow in stenotic elastic
+ tubes},
+ Volume = {121},
+ Year = {1999}
+}
+
+###Article{ tang-yang-ku-99,
+ Author = {Tang, D. and Yang, J. and Yang, C. and Ku, D.N.},
+ code = {fsi11},
+ Journal = {J. Biomech. Engng.},
+ Pages = {494-501},
+ Title = {A nonlinear axisymmetric model with fluid-wall
+ interactions for steady viscous flow in stenotic elastic
+ tubes},
+ Volume = {121},
+ Year = {1999}
+}
+
+@Article{ tani,
+ Author = {Tani, A. and Tanaka, N.},
+ Journal = {Arch. Rat. Mech. Anal.},
+ Number = {4},
+ Pages = {303-314},
+ Title = {Large-time existence of surface waves in incompressible
+ viscous fluids with or without surface tension},
+ Volume = {130},
+ Year = {1995}
+}
+
+###Article{ tani,
+ Author = {Tani, A. and Tanaka, N.},
+ Journal = {Arch. Rat. Mech. Anal.},
+ Number = {4},
+ Pages = {303-314},
+ Title = {Large-time existence of surface waves in incompressible
+ viscous fluids with or without surface tension},
+ Volume = {130},
+ Year = {1995}
+}
+
+@Article{ tani1,
+ Author = {Tani, A.},
+ Journal = {Lect. Notes in Num. Appl. Anal.},
+ Pages = {153-185},
+ Title = {Global existence of incompressible viscous capillary fluid
+ flow in a field of external forces},
+ Volume = {11},
+ Year = {1991}
+}
+
+###Article{ tani1,
+ Author = {Tani, A.},
+ Journal = {Lect. Notes in Num. Appl. Anal.},
+ Pages = {153-185},
+ Title = {Global existence of incompressible viscous capillary fluid
+ flow in a field of external forces},
+ Volume = {11},
+ Year = {1991}
+}
+
+@Article{ taouli2007ajr,
+ Title = {Diffusion-weighted {MRI} for quantification of liver
+ fibrosis: preliminary experience},
+ Author = {Taouli, Bachir and Tolia, Anuj J and Losada, Mariela and
+ Babb, James S and Chan, Edwin S and Bannan, Michael A and
+ Tobias, Hillel},
+ Journal = {American Journal of Roentgenology},
+ Year = {2007},
+ Number = {4},
+ Pages = {799--806},
+ Volume = {189},
+ Publisher = {Am Roentgen Ray Soc}
+}
+
+@Book{ taylor-96,
+ Author = {Taylor, M.E.},
+ Publisher = {Springer},
+ Title = {Partial Differential Equations III. Nonlinear equations},
+ Year = {1996}
+}
+
+###Book{ taylor-96,
+ Author = {Taylor, M.E.},
+ Publisher = {Springer},
+ Title = {Partial Differential Equations III. Nonlinear equations},
+ Year = {1996}
+}
+
+@Article{ taylor-hughes-zarins-98,
+ Author = {Taylor, C.A. and Hughes, T. J. R. and Zarins, C. K.},
+ Journal = {Comput. Meth. Appl. Mech. Engrg},
+ Pages = {155--196},
+ Title = {Finite element modeling of blood flow in arteries},
+ Volume = {158},
+ Year = {1998}
+}
+
+###Article{ taylor-hughes-zarins-98,
+ Author = {Taylor, C.A. and Hughes, T. J. R. and Zarins, C. K.},
+ Journal = {Comput. Meth. Appl. Mech. Engrg},
+ Pages = {155--196},
+ Title = {Finite element modeling of blood flow in arteries},
+ Volume = {158},
+ Year = {1998}
+}
+
+@Article{ taylor2013ffr,
+ Title = {Computational fluid dynamics applied to cardiac computed
+ tomography for noninvasive quantification of fractional
+ flow reserve: scientific basis},
+ Author = {Taylor, Charles A and Fonte, Timothy A and Min, James K},
+ Journal = {Journal of the American College of Cardiology},
+ Volume = {61},
+ Number = {22},
+ Pages = {2233--2241},
+ Year = {2013},
+ Publisher = {Am Coll Cardio Found}
+}
+
+@Article{ taylor_experimental_2004,
+ langid = {english},
+ Title = {Experimental and {{Computational Methods}} in
+ {{Cardiovascular Fluid Mechanics}}},
+ Volume = {36},
+ ISSN = {0066-4189, 1545-4479},
+ URL = {http://arjournals.annualreviews.org/doi/abs/10.1146%2Fannurev.fluid.36.050802.121944},
+ DOI = {10.1146/annurev.fluid.36.050802.121944},
+ Number = {1},
+ JournalTitle = {Annual Review of Fluid Mechanics},
+ URLDate = {2019-02-21},
+ Year = {2004-01},
+ Pages = {197-231},
+ Author = {Taylor, Charles A. and Draney, Mary T.}
+}
+
+@Article{ taylor_image-based_2010,
+ Title = {Image-Based Modeling of Blood Flow and Vessel Wall
+ Dynamics: Applications, Methods and Future Directions},
+ Volume = {38},
+ ShortTitle = {Image-Based Modeling of Blood Flow and Vessel Wall
+ Dynamics},
+ Number = {3},
+ JournalTitle = {Annals of biomedical engineering},
+ Year = {2010},
+ Pages = {1188--1203},
+ Author = {Taylor, Charles A. and Steinman, David A.}
+}
+
+@Article{ taylor_predictive_1999,
+ langid = {english},
+ Title = {Predictive Medicine: Computational Techniques in
+ Therapeutic Decision-Making},
+ Volume = {4},
+ ISSN = {1092-9088},
+ DOI = {10.1002/(SICI)1097-0150(1999)4:5<231::AID-IGS1>3.0.CO;2-Z},
+ ShortTitle = {Predictive Medicine},
+ Abstract = {The current paradigm for surgery planning for the
+ treatment of cardiovascular disease relies exclusively on
+ diagnostic imaging data to define the present state of the
+ patient, empirical data to evaluate the efficacy of prior
+ treatments for similar patients, and the judgement of the
+ surgeon to decide on a preferred treatment. The individual
+ variability and inherent complexity of human biological
+ systems is such that diagnostic imaging and empirical data
+ alone are insufficient to predict the outcome of a given
+ treatment for an individual patient. We propose a new
+ paradigm of predictive medicine in which the physician
+ utilizes computational tools to construct and evaluate a
+ combined anatomic/physiologic model to predict the outcome
+ of alternative treatment plans for an individual patient.
+ The predictive medicine paradigm is implemented in a
+ software system developed for Simulation-Based Medical
+ Planning. This system provides an integrated set of tools
+ to test hypotheses regarding the effect of alternate
+ treatment plans on blood flow in the cardiovascular system
+ of an individual patient. It combines an Internet-based
+ user interface developed using Java and VRML, image
+ segmentation, geometric solid modeling, automatic finite
+ element mesh generation, computational fluid dynamics, and
+ scientific visualization techniques. This system is applied
+ to the evaluation of alternate, patient-specific treatments
+ for a case of lower extremity occlusive cardiovascular
+ disease.},
+ Number = {5},
+ JournalTitle = {Computer Aided Surgery: Official Journal of the
+ International Society for Computer Aided Surgery},
+ ShortJournal = {Comput. Aided Surg.},
+ Year = {1999},
+ Pages = {231-247},
+ Author = {Taylor, C. A. and Draney, M. T. and Ku, J. P. and Parker,
+ D. and Steele, B. N. and Wang, K. and Zarins, C. K.},
+ EPrintType = {pmid},
+ EPrint = {10581521}
+}
+
+@Article{ temam-68,
+ Author = {Temam, R.},
+ Journal = {Bull. Soc. Math. France},
+ Pages = {115--152},
+ Title = {Une m{\'e}thode d'approximation de la solution des
+ {\'e}quations de {N}avier-{S}tokes},
+ Volume = {96},
+ Year = {1968}
+}
+
+###Article{ temam-68,
+ Author = {Temam, R.},
+ Journal = {Bull. Soc. Math. France},
+ Pages = {115--152},
+ Title = {Une m{\'e}thode d'approximation de la solution des
+ {\'e}quations de {N}avier-{S}tokes},
+ Volume = {96},
+ Year = {1968}
+}
+
+@Book{ temam-79,
+ Author = {Temam, R.},
+ Publisher = {North-Holland},
+ Title = {{Navier-Stokes Equations, Theory and Numerical Analysis}},
+ Year = {1979}
+}
+
+###Book{ temam-79,
+ Author = {Temam, R.},
+ Publisher = {North-Holland},
+ Title = {{Navier-Stokes Equations, Theory and Numerical Analysis}},
+ Year = {1979}
+}
+
+@Book{ temam-88,
+ Author = {Temam, R.},
+ Publisher = {{Springer-Verlag}},
+ Title = {{Infinite-dimensional dynamical systems in mechanics and
+ physics}},
+ Year = {1988}
+}
+
+###Book{ temam-88,
+ Author = {Temam, R.},
+ Publisher = {{Springer-Verlag}},
+ Title = {{Infinite-dimensional dynamical systems in mechanics and
+ physics}},
+ Year = {1988}
+}
+
+@Book{ temam-95,
+ Author = {Temam, R.},
+ Edition = {2d},
+ Publisher = {{CBMS-NSF Regional Conference Series in Applied
+ Mathematics, SIAM}},
+ Title = {{Navier-Stokes Equations and Nonlinear Functional
+ Analysis}},
+ Year = {1995}
+}
+
+###Book{ temam-95,
+ Author = {Temam, R.},
+ Edition = {2d},
+ Publisher = {{CBMS-NSF Regional Conference Series in Applied
+ Mathematics, SIAM}},
+ Title = {{Navier-Stokes Equations and Nonlinear Functional
+ Analysis}},
+ Year = {1995}
+}
+
+@Article{ temam1968bsmf,
+ Title = {Une m{\'e}thode d'approximation de la solution des
+ {\'e}quations de {N}avier-{S}tokes},
+ Author = {Temam, R.},
+ Journal = {Bull. Soc. Math. France},
+ Year = {1968},
+ Pages = {115--152},
+ Volume = {96},
+ Keywords = {Navier-Stokes}
+}
+
+@Article{ temam1968methode,
+ Title = {Une m{\'e}thode d'approximation de la solution des
+ {\'e}quations de Navier-Stokes},
+ Author = {Temam, Roger},
+ Journal = {Bulletin de la Soci{\'e}t{\'e} Math{\'e}matique de France},
+ Volume = {96},
+ Pages = {115--152},
+ Year = {1968}
+}
+
+###Article{ temam1968methode,
+ Title = {Une m{\'e}thode d'approximation de la solution des
+ {\'e}quations de Navier-Stokes},
+ Author = {Temam, Roger},
+ Journal = {Bulletin de la Soci{\'e}t{\'e} Math{\'e}matique de France},
+ Volume = {96},
+ Pages = {115--152},
+ Year = {1968}
+}
+
+@Article{ temam69-1,
+ Author = "Temam, R.",
+ Title = "{Sur l'approximation de la solution des equations de
+ Navier-Stokes par la m\'{e}thode des pas fractionaires I}",
+ Journal = {Arch. Rational Mech. Anal.},
+ fjournal = {Archive for Rational Mechanics and Analysis},
+ Volume = "32",
+ Pages = "135--153",
+ Year = "1969"
+}
+
+###Article{ temam69-1,
+ Author = "Temam, R.",
+ Title = "{Sur l'approximation de la solution des equations de
+ Navier-Stokes par la m\'{e}thode des pas fractionaires I}",
+ Journal = {Arch. Rational Mech. Anal.},
+ fjournal = {Archive for Rational Mechanics and Analysis},
+ Volume = "32",
+ Pages = "135--153",
+ Year = "1969"
+}
+
+@Article{ temam69-2,
+ Author = "Temam, R.",
+ Title = "{Sur l'approximation de la solution des equations de
+ Navier-Stokes par la m\'{e}thode des pas fractionaires II}",
+ Journal = {Arch. Rational Mech. Anal.},
+ fjournal = {Archive for Rational Mechanics and Analysis},
+ Volume = "32",
+ Pages = "377--385",
+ Year = "1969"
+}
+
+###Article{ temam69-2,
+ Author = "Temam, R.",
+ Title = "{Sur l'approximation de la solution des equations de
+ Navier-Stokes par la m\'{e}thode des pas fractionaires II}",
+ Journal = {Arch. Rational Mech. Anal.},
+ fjournal = {Archive for Rational Mechanics and Analysis},
+ Volume = "32",
+ Pages = "377--385",
+ Year = "1969"
+}
+
+@Book{ temam_navier-stokes_2001,
+ Title = {Navier-{{Stokes}} Equations: Theory and Numerical
+ Analysis},
+ ShortTitle = {Navier-{{Stokes}} Equations},
+ Author = {Temam, Roger},
+ Year = {2001},
+ Volume = {343},
+ Publisher = {{American Mathematical Soc.}}
+}
+
+@InCollection{ teshukov-99,
+ Address = {Basel},
+ Author = {Teshukov, V. M.},
+ BookTitle = {Hyperbolic problems: theory, numerics, applications, Vol.
+ II (Z{\"u}rich, 1998)},
+ Pages = {953--962},
+ Publisher = {Birkh{\"a}user},
+ Series = {Internat. Ser. Numer. Math., 130},
+ Title = {The {R}iemann problem for the integrodifferential
+ equations of the shallow water theory},
+ Year = {1999}
+}
+
+###InCollection{ teshukov-99,
+ Address = {Basel},
+ Author = {Teshukov, V. M.},
+ BookTitle = {Hyperbolic problems: theory, numerics, applications, Vol.
+ II (Z{\"u}rich, 1998)},
+ Pages = {953--962},
+ Publisher = {Birkh{\"a}user},
+ Series = {Internat. Ser. Numer. Math., 130},
+ Title = {The {R}iemann problem for the integrodifferential
+ equations of the shallow water theory},
+ Year = {1999}
+}
+
+@Article{ tezduyar-01,
+ Author = {Tezduyar, T.E.},
+ Journal = {Arch. Comput. Methods Engrg.},
+ Pages = {83--130},
+ Title = {Finite Element Methods for Fluid Dynamics with Moving
+ Boundaries and Interfaces},
+ Volume = {8},
+ Year = {2001}
+}
+
+###Article{ tezduyar-01,
+ Author = {Tezduyar, T.E.},
+ Journal = {Arch. Comput. Methods Engrg.},
+ Pages = {83--130},
+ Title = {Finite Element Methods for Fluid Dynamics with Moving
+ Boundaries and Interfaces},
+ Volume = {8},
+ Year = {2001}
+}
+
+@Article{ thenappan2016critical,
+ Title = {The critical role of pulmonary arterial compliance in
+ pulmonary hypertension},
+ Author = {Thenappan, Thenappan and Prins, Kurt W and Pritzker, Marc
+ R and Scandurra, John and Volmers, Karl and Weir, E
+ Kenneth},
+ Journal = {Annals of the American Thoracic Society},
+ Volume = {13},
+ Number = {2},
+ Pages = {276--284},
+ Year = {2016},
+ Publisher = {American Thoracic Society}
+}
+
+@Article{ thiriet-martin-borret-hecht-96,
+ Annote = {hemodynamics, non newtonian},
+ Author = {Thiriet, M. and Martin-Borret, G. and Hecht, F.},
+ code = {hemo},
+ Journal = {J. Phys III France},
+ Pages = {529-542},
+ Title = {Ecoulement rh{\'e}ofluidifiant dans un coude et une
+ bifurcation plane sym{\'e}trique. Application {\`a}
+ l'{\'e}coulement sanguin dans la grande circulation},
+ Volume = {6},
+ Year = {1996}
+}
+
+###Article{ thiriet-martin-borret-hecht-96,
+ Annote = {hemodynamics, non newtonian},
+ Author = {Thiriet, M. and Martin-Borret, G. and Hecht, F.},
+ code = {hemo},
+ Journal = {J. Phys III France},
+ Pages = {529-542},
+ Title = {Ecoulement rh{\'e}ofluidifiant dans un coude et une
+ bifurcation plane sym{\'e}trique. Application {\`a}
+ l'{\'e}coulement sanguin dans la grande circulation},
+ Volume = {6},
+ Year = {1996}
+}
+
+@Book{ thom06,
+ Address = {Berlin},
+ Author = {Thom{\'e}e, V.},
+ Edition = {Second},
+ Publisher = {Springer-Verlag},
+ Series = {Springer Series in Computational Mathematics},
+ Title = {Galerkin finite element methods for parabolic problems},
+ Volume = {25},
+ Year = {2006}
+}
+
+###Book{ thom06,
+ Address = {Berlin},
+ Author = {Thom{\'e}e, V.},
+ Edition = {Second},
+ Publisher = {Springer-Verlag},
+ Series = {Springer Series in Computational Mathematics},
+ Title = {Galerkin finite element methods for parabolic problems},
+ Volume = {25},
+ Year = {2006}
+}
+
+@Article{ thomas-trujillo-99,
+ Author = {Thomas, J.-M. and Trujillo, D.},
+ code = {por13},
+ fjournal = {International Journal for Numerical Methods in
+ Engineering},
+ Journal = {Internat. J. Numer. Methods Engrg.},
+ Note = {Fourth World Congress on Computational Mechanics (Buenos
+ Aires, 1998)},
+ Number = {9},
+ Pages = {1351--1366},
+ Title = {Mixed finite volume methods},
+ Volume = {46},
+ Year = {1999}
+}
+
+###Article{ thomas-trujillo-99,
+ Author = {Thomas, J.-M. and Trujillo, D.},
+ code = {por13},
+ fjournal = {International Journal for Numerical Methods in
+ Engineering},
+ Journal = {Internat. J. Numer. Methods Engrg.},
+ Note = {Fourth World Congress on Computational Mechanics (Buenos
+ Aires, 1998)},
+ Number = {9},
+ Pages = {1351--1366},
+ Title = {Mixed finite volume methods},
+ Volume = {46},
+ Year = {1999}
+}
+
+@Book{ thomee-06,
+ Author = {Thom{\'e}e, V.},
+ Title = {Galerkin finite element methods for parabolic problems},
+ Series = {Springer Series in Computational Mathematics},
+ Volume = {25},
+ Edition = {Second},
+ Publisher = {Springer-Verlag},
+ Address = {Berlin},
+ Year = {2006}
+}
+
+###Book{ thomee-06,
+ Author = {Thom{\'e}e, V.},
+ Title = {Galerkin finite element methods for parabolic problems},
+ Series = {Springer Series in Computational Mathematics},
+ Volume = {25},
+ Edition = {Second},
+ Publisher = {Springer-Verlag},
+ Address = {Berlin},
+ Year = {2006}
+}
+
+@Article{ thygesen2007jacc,
+ Title = {Universal Definition of Myocardial Infarction},
+ Author = {Thygesen, Kristian and Alpert, Joseph S. and White, Harvey
+ D.},
+ Journal = {Journal of the American College of Cardiology},
+ Year = {2007},
+ Number = {22},
+ Pages = {2173-2195},
+ Volume = {50},
+ DOI = {10.1016/j.jacc.2007.09.011},
+ EPrint = {/data/Journals/JAC/23108/09011.pdf},
+ File = {thygesen07.pdf:thygesen07.pdf:PDF},
+ timestamp = {2015/09/11},
+ URL = { + http://dx.doi.org/10.1016/j.jacc.2007.09.011}
+}
+
+@Article{ tiago_patient-specific_2014,
+ Title = {Patient-Specific Blood Flow Simulations: Setting
+ {{Dirichlet}} Boundary Conditions for Minimal Error with
+ Respect to Measured Data},
+ Volume = {9},
+ ShortTitle = {Patient-Specific Blood Flow Simulations},
+ Number = {6},
+ JournalTitle = {Mathematical Modelling of Natural Phenomena},
+ Year = {2014},
+ Pages = {98--116},
+ Author = {Tiago, Jorge and Gambaruto, Alberto and Sequeira, Adelia}
+}
+
+@Article{ tiago_velocity_2017,
+ langid = {english},
+ Title = {A Velocity Tracking Approach for the Data Assimilation
+ Problem in Blood Flow Simulations},
+ Volume = {33},
+ ISSN = {2040-7947},
+ URL = {https://onlinelibrary.wiley.com/doi/abs/10.1002/cnm.2856},
+ DOI = {10.1002/cnm.2856},
+ Abstract = {Several advances have been made in data assimilation
+ techniques applied to blood flow modeling. Typically,
+ idealized boundary conditions, only verified in straight
+ parts of the vessel, are assumed. We present a general
+ approach, on the basis of a Dirichlet boundary control
+ problem, that may potentially be used in different parts of
+ the arterial system. The relevance of this method appears
+ when computational reconstructions of the 3D domains, prone
+ to be considered sufficiently extended, are either not
+ possible, or desirable, because of computational costs. On
+ the basis of taking a fully unknown velocity profile as the
+ control, the approach uses a discretize then optimize
+ methodology to solve the control problem numerically. The
+ methodology is applied to a realistic 3D geometry
+ representing a brain aneurysm. The results show that this
+ data assimilation approach may be preferable to a pressure
+ control strategy and that it can significantly improve the
+ accuracy associated to typical solutions obtained using
+ idealized velocity profiles.},
+ Number = {10},
+ JournalTitle = {International Journal for Numerical Methods in Biomedical
+ Engineering},
+ URLDate = {2019-02-20},
+ Year = {2017},
+ Pages = {e2856},
+ Author = {Tiago, J. and Guerra, T. and Sequeira, A.}
+}
+
+@Article{ tian,
+ Author = {Tian-Xiao Zhou and Min-Fu Feng},
+ Journal = {Math. of Comp.},
+ Number = {202},
+ Pages = {531-543},
+ Title = {{A least squares Petrov-Galerkin finite element method for
+ the stationary Navier-Stokes equations}},
+ Volume = {60},
+ Year = {1993}
+}
+
+###Article{ tian,
+ Author = {Tian-Xiao Zhou and Min-Fu Feng},
+ Journal = {Math. of Comp.},
+ Number = {202},
+ Pages = {531-543},
+ Title = {{A least squares Petrov-Galerkin finite element method for
+ the stationary Navier-Stokes equations}},
+ Volume = {60},
+ Year = {1993}
+}
+
+@Article{ timmermans-minev-vandevosse-96,
+ Title = {{An approximate projection scheme for incompressible flow
+ using spectral elements}},
+ Author = "Timmermans, L.~J.~P. and Minev, P.~D. and Van De Vosse,
+ F.~N.",
+ Journal = ijnmf,
+ Volume = {22},
+ Number = {7},
+ Pages = {673--688},
+ Year = {1996},
+ Publisher = {Chichester; New York: Wiley, c1981-}
+}
+
+###Article{ timmermans-minev-vandevosse-96,
+ Title = {{An approximate projection scheme for incompressible flow
+ using spectral elements}},
+ Author = "Timmermans, L.~J.~P. and Minev, P.~D. and Van De Vosse,
+ F.~N.",
+ Journal = ijnmf,
+ Volume = {22},
+ Number = {7},
+ Pages = {673--688},
+ Year = {1996},
+ Publisher = {Chichester; New York: Wiley, c1981-}
+}
+
+@Article{ timmermans1996approximate,
+ Title = {An approximate projection scheme for incompressible flow
+ using spectral elements},
+ Author = {Timmermans, LJP and Minev, PD and Van De Vosse, FN},
+ Journal = {International journal for numerical methods in fluids},
+ Volume = {22},
+ Number = {7},
+ Pages = {673--688},
+ Year = {1996},
+ Publisher = {Wiley Online Library}
+}
+
+@PhdThesis{ tinkl2014phd,
+ Title = {Towards a predictive computational growth model for
+ aneurysms},
+ Author = {Tinkl, Susanna},
+ School = {Technische Universit\"at M\"unchen},
+ Year = {2014},
+ File = {:tinkl14.pdf:PDF},
+ owner = {pfaller},
+ timestamp = {2014/12/01}
+}
+
+@Article{ tippett_ensemble_2003,
+ langid = {english},
+ Title = {Ensemble {{Square Root Filters}}*},
+ Volume = {131},
+ ISSN = {0027-0644, 1520-0493},
+ URL = {http://journals.ametsoc.org/doi/abs/10.1175/1520-0493%282003%29131%3C1485%3AESRF%3E2.0.CO%3B2},
+ DOI = {10.1175/1520-0493(2003)131<1485:ESRF>2.0.CO;2},
+ Number = {7},
+ JournalTitle = {Monthly Weather Review},
+ URLDate = {2019-02-27},
+ Year = {2003-07},
+ Pages = {1485-1490},
+ Author = {Tippett, Michael K. and Anderson, Jeffrey L. and Bishop,
+ Craig H. and Hamill, Thomas M. and Whitaker, Jeffrey S.}
+}
+
+@InProceedings{ tobar2015learning,
+ Title = {Learning Stationary Time Series using Gaussian Processes
+ with Nonparametric Kernels},
+ Author = {Tobar, F. and Bui, T. and Turner, R.},
+ BookTitle = {Neural Information Processing Systems 28},
+ Year = {2015}
+}
+
+@InProceedings{ tobar2015modelling,
+ Title = {Modelling of Complex Signals Using Gaussian Processes},
+ Author = {Tobar, Felipe and Turner, Richard E},
+ BookTitle = {IEEE ICASSP},
+ Year = {2015}
+}
+
+@Article{ tobiska-verurth-96,
+ Author = {Tobiska, L. and Verf{\"u}rth, R.},
+ Journal = {SIAM J. Numer. Anal.},
+ Number = {1},
+ Pages = {107--127},
+ Title = {Analysis of a streamline diffusion finite element method
+ for the {S}tokes and {N}avier-{S}tokes equations},
+ Volume = {33},
+ Year = {1996}
+}
+
+###Article{ tobiska-verurth-96,
+ Author = {Tobiska, L. and Verf{\"u}rth, R.},
+ Journal = {SIAM J. Numer. Anal.},
+ Number = {1},
+ Pages = {107--127},
+ Title = {Analysis of a streamline diffusion finite element method
+ for the {S}tokes and {N}avier-{S}tokes equations},
+ Volume = {33},
+ Year = {1996}
+}
+
+@Article{ tobon-gomez_understanding_2013,
+ Title = {Understanding the mechanisms amenable to {CRT} response:
+ from pre-operative multimodal image data to
+ patient-specific computational models},
+ Author = {Tobon-Gomez, C. and Duchateau, N. and Sebastian, R. and
+ Marchesseau, S. and Camara, O. and Donal, E. and De Craene,
+ M. and Pashaei, A. and Relan, J. and Steghofer, M. and
+ Lamata, P. and Delingette, H. and Duckett, S. and Garreau,
+ M. and Hernandez, A. and Rhode, K.S. and Sermesant, M. and
+ Ayache, N. and Leclercq, C. and Razavi, R. and Smith, N.P.
+ and Frangi, A.F.},
+ Journal = {Medical \& Biological Engineering \& Computing},
+ Year = {2013},
+ Month = nov,
+ Number = {11},
+ Pages = {1235--1250},
+ Volume = {51},
+ DOI = {10.1007/s11517-013-1044-7},
+ File = {Tobon2012.pdf:/home/hoermann/.zotero/zotero/krpbc0h6.default/zotero/storage/NH3Z9MSU/Tobon2012.pdf:application/pdf},
+ ISSN = {0140-0118, 1741-0444},
+ Language = {en},
+ ShortTitle = {Understanding the mechanisms amenable to {CRT} response},
+ URL = {http://link.springer.com/10.1007/s11517-013-1044-7},
+ URLDate = {2014-11-27}
+}
+
+@Article{ toro2002aoco,
+ Title = {Long-term follow-up of patients after coarctation of the
+ aorta repair},
+ Author = {Toro-Salazar, Olga H and Steinberger, Julia and Thomas,
+ William and Rocchini, Albert P and Carpenter, Becky and
+ Moller, James H},
+ Journal = {The American journal of cardiology},
+ Volume = {89},
+ Number = {5},
+ Pages = {541--547},
+ Year = {2002},
+ Publisher = {Elsevier}
+}
+
+@Article{ toro2002coao,
+ Title = {Long-term follow-up of patients after coarctation of the
+ aorta repair},
+ Author = {Toro-Salazar, Olga H and Steinberger, Julia and Thomas,
+ William and Rocchini, Albert P and Carpenter, Becky and
+ Moller, James H},
+ Journal = {The American journal of cardiology},
+ Volume = {89},
+ Number = {5},
+ Pages = {541--547},
+ Year = {2002},
+ Publisher = {Elsevier}
+}
+
+@Article{ torrey1956physrev,
+ Title = {Bloch Equations with Diffusion Terms},
+ Author = {Torrey, H. C.},
+ Journal = {Physical Review},
+ Year = {1956},
+ Month = nov,
+ Number = {3},
+ Pages = {563--565},
+ Volume = {104},
+ Abstract = {The phenomenological Bloch equations in nuclear magnetic
+ resonance are generalized by the addition of terms due to
+ the transfer of magnetization by diffusion. The revised
+ equations describe phenomena under conditions of
+ inhomogeneity in magnetic field, relaxation rates, or
+ initial magnetization. As an example the equations are
+ solved in the case of the free precession of magnetic
+ moment in the presence of an inhomogeneous magnetic field
+ following the application of a 90{\textdegree} pulse with
+ subsequent applications of a succession of 180{\textdegree}
+ pulses. The spin-echo amplitudes agree with the results of
+ Carr and Purcell from a random walk theory.},
+ DOI = {10.1103/PhysRev.104.563},
+ owner = {david},
+ timestamp = {2015-05-05 20:18:11},
+ URL = {http://link.aps.org/doi/10.1103/PhysRev.104.563},
+ URLDate = {2015-05-05}
+}
+
+@InCollection{ toussaint-etal-10,
+ Year = {2010},
+ ISBN = {978-3-642-15704-2},
+ BookTitle = {Medical Image Computing and Computer-Assisted Intervention
+ â MICCAI 2010},
+ Volume = {6361},
+ Series = {Lecture Notes in Computer Science},
+ Editor = {Jiang, Tianzi and Navab, Nassir and Pluim, JosienP.W. and
+ Viergever, MaxA.},
+ Title = {In vivo Human {3D} Cardiac Fibre Architecture:
+ Reconstruction Using Curvilinear Interpolation of Diffusion
+ Tensor Images},
+ Publisher = {Springer Berlin Heidelberg},
+ Author = {Toussaint, N. and Sermesant, M. and Stoeck, C.T. and
+ Kozerke, S. and Batchelor, P.G.},
+ Pages = {418-425}
+}
+
+@Article{ toussaint-etal-2013,
+ Title = {In vivo human cardiac fibre architecture estimation using
+ shape-based diffusion tensor processing},
+ Journal = {Medical Image Analysis},
+ Volume = {17},
+ Number = {8},
+ Pages = {1243 - 1255},
+ Year = {2013},
+ Note = {},
+ ISSN = {1361-8415},
+ Author = {N. Toussaint and C. T. Stoeck and T. Schaeffter and S.
+ Kozerke and M. Sermesant and P.G. Batchelor},
+ Keywords = {Prolate spheroidal coordinates }
+}
+
+@Article{ toussaint2010miccai,
+ Title = {In vivo human 3D cardiac fibre architecture:
+ reconstruction using curvilinear interpolation of diffusion
+ tensor images.},
+ Author = {Toussaint, Nicolas and Sermesant, Maxime and Stoeck,
+ Christian T. and Kozerke, Sebastian and Batchelor, Philip
+ G.},
+ Journal = {Med Image Comput Comput Assist Interv},
+ Year = {2010},
+ Number = {Pt 1},
+ Pages = {418--425},
+ Volume = {13},
+ Abstract = {In vivo imaging of the cardiac 3D fibre architecture is
+ still a challenge, but it would have many clinical
+ applications, for instance to better understand pathologies
+ and to follow up remodelling after therapy. Recently,
+ cardiac MRI enabled the acquisition of Diffusion Tensor
+ images (DTI) of 2D slices. We propose a method for the
+ complete 3D reconstruction of cardiac fibre architecture in
+ the left ventricular myocardium from sparse in vivo DTI
+ slices. This is achieved in two steps. First we map
+ non-linearly the left ventricular geometry to a truncated
+ ellipsoid. Second, we express coordinates and tensor
+ components in Prolate Spheroidal System, where an
+ anisotropic Gaussian kernel regression interpolation is
+ performed. The framework is initially applied to a
+ statistical cardiac DTI atlas in order to estimate the
+ optimal anisotropic bandwidths. Then, it is applied to in
+ vivo beating heart DTI data sparsely acquired on a healthy
+ subject. Resulting in vivo tensor field shows good
+ correlation with literature, especially the elevation
+ (helix) angle transmural variation. To our knowledge, this
+ is the first reconstruction of in vivo human 3D cardiac
+ fibre structure. Such approach opens up possibilities in
+ terms of analysis of the fibre architecture in patients.},
+ Institution = {King's College London, Imaging Sciences, London, UK.
+ nicolas.toussaint@kcl.ac.uk},
+ Keywords = {Algorithms; Diffusion Magnetic Resonance Imaging, methods;
+ Heart Ventricles, cytology; Humans; Image Enhancement,
+ methods; Image Interpretation, Computer-Assisted, methods;
+ Imaging, Three-Dimensional, methods; Pattern Recognition,
+ Automated, methods; Reproducibility of Results; Sensitivity
+ and Specificity; Subtraction Technique},
+ Language = {eng},
+ medline-pst = {ppublish},
+ owner = {stoeckc},
+ pmid = {20879258},
+ timestamp = {2015.07.24}
+}
+
+@TechReport{ trompert-hansen-99,
+ Annote = {mhd, dynamo, finite volume},
+ Author = {Trompert, R. A. and Hansen, U.},
+ code = {mhd22},
+ Institution = {Utrecht Univ.},
+ Title = {A code for the simulation of dynamos in a strongly
+ rotating incompressible fluid},
+ Year = {1999}
+}
+
+###TechReport{ trompert-hansen-99,
+ Annote = {mhd, dynamo, finite volume},
+ Author = {Trompert, R. A. and Hansen, U.},
+ code = {mhd22},
+ Institution = {Utrecht Univ.},
+ Title = {A code for the simulation of dynamos in a strongly
+ rotating incompressible fluid},
+ Year = {1999}
+}
+
+@Article{ tseng2003,
+ Title = {Diffusion tensor MRI of myocardial fibers and sheets:
+ Correspondence with visible cut-face texture},
+ Author = {Tseng, W.-Y. I. and Wedeen, V. J. and Reese, T. G. and
+ Smith, R. N. and Halpern, E. F.},
+ Journal = {Journal of Magnetic Resonance Imaging},
+ Volume = {17},
+ Number = {1},
+ Pages = {31--42},
+ Year = {2003},
+ Publisher = {Wiley Online Library}
+}
+
+@Article{ tuan-pham-verron-roubaud-98,
+ Title = {A singular evolutive extended Kalman filter for data
+ assimilation in oceanography},
+ Author = {Tuan Pham, D. and Verron, J. and Christine Roubaud, M.},
+ Journal = {Journal of Marine systems},
+ Volume = {16},
+ Number = {3-4},
+ Pages = {323--340},
+ Year = {1998},
+ Publisher = {Elsevier}
+}
+
+###Article{ tuan-pham-verron-roubaud-98,
+ Title = {A singular evolutive extended Kalman filter for data
+ assimilation in oceanography},
+ Author = {Tuan Pham, D. and Verron, J. and Christine Roubaud, M.},
+ Journal = {Journal of Marine systems},
+ Volume = {16},
+ Number = {3-4},
+ Pages = {323--340},
+ Year = {1998},
+ Publisher = {Elsevier}
+}
+
+@Article{ turkel-fiterman-van-leer-93,
+ Author = {Turkel, E. and Fiterman, A. and van Leer, B.},
+ Journal = {ICASE Report},
+ Title = {Preconditionning and the limit to the incompressible flow
+ equations},
+ Volume = {93-42},
+ Year = {1993}
+}
+
+###Article{ turkel-fiterman-van-leer-93,
+ Author = {Turkel, E. and Fiterman, A. and van Leer, B.},
+ Journal = {ICASE Report},
+ Title = {Preconditionning and the limit to the incompressible flow
+ equations},
+ Volume = {93-42},
+ Year = {1993}
+}
+
+@Article{ tyszka_three-dimensional_2000,
+ Title = {Three-Dimensional, Time-Resolved ({{4D}}) Relative
+ Pressure Mapping Using Magnetic Resonance Imaging},
+ Volume = {12},
+ Number = {2},
+ JournalTitle = {Journal of Magnetic Resonance Imaging: An Official Journal
+ of the International Society for Magnetic Resonance in
+ Medicine},
+ Year = {2000},
+ Pages = {321--329},
+ Author = {Tyszka, J. Michael and Laidlaw, David H. and Asa, Joseph
+ W. and Silverman, Jeffrey M.}
+}
+
+@InCollection{ tzavaras-00,
+ Author = {Tzavaras, A. E.},
+ BookTitle = {Advances in Math. Fluid Mechanics},
+ Editor = {Malek, J. and Necas, J. and Rokyta, M. },
+ Pages = {192-222},
+ Publisher = {Springer},
+ Title = {On the mathematical theory of fluid dynamic limits to
+ conservation laws},
+ Year = {2000}
+}
+
+###InCollection{ tzavaras-00,
+ Author = {Tzavaras, A. E.},
+ BookTitle = {Advances in Math. Fluid Mechanics},
+ Editor = {Malek, J. and Necas, J. and Rokyta, M. },
+ Pages = {192-222},
+ Publisher = {Springer},
+ Title = {On the mathematical theory of fluid dynamic limits to
+ conservation laws},
+ Year = {2000}
+}
+
+@Article{ ubbink2006mia,
+ Title = {Towards model-based analysis of cardiac \{MR\} tagging
+ data: Relation between left ventricular shear strain and
+ myofiber orientation },
+ Author = {S.W.J. Ubbink and P.H.M. Bovendeerd and T. Delhaas and T.
+ Arts and F.N. van de Vosse},
+ Journal = {Medical Image Analysis },
+ Year = {2006},
+ Note = {Special Issue on Functional Imaging and Modelling of the
+ Heart (FIMH 2005) },
+ Number = {4},
+ Pages = {632 - 641},
+ Volume = {10},
+ Abstract = {Many cardiac pathologies are reflected in abnormal
+ myocardial deformation, accessible through magnetic
+ resonance tagging (MRT). Interpretation of the \{MRT\} data
+ is difficult, since the relation between pathology and
+ deformation is not straightforward. Mathematical models of
+ cardiac mechanics could be used to translate measured
+ abnormalities into the underlying pathology, but, so far,
+ they even fail to correctly simulate myocardial deformation
+ in the healthy heart. In this study we investigated to what
+ extent (1) our previously published three-dimensional
+ finite element model of cardiac mechanics [Kerckhoffs,
+ R.C.P., Bovendeerd, P.H.M., Kotte, J.C.S., Prinzen, F.W.,
+ Smits, K., Arts, T., 2003. Homogeneity of cardiac
+ contraction despite physiological asynchrony of
+ depolarization: a model study. Ann. Biomed. Eng. 31,
+ 536?547] can simulate measured cardiac deformation, and (2)
+ discrepancies between strains in model and experiment are
+ related to the choice of the myofiber orientation in the
+ model. To this end, we measured midwall circumferential
+ strain Ecc and circumferential-radial shear strain Ecr in
+ three healthy subjects using MRT. Ecc as computed in the
+ model agreed well with measured Ecc. Computed Ecr differed
+ significantly from measured Ecr. The time course of Ecr was
+ found to be very sensitive to the choice of the myofiber
+ orientation, in particular to the choice of the transverse
+ angle. Discrepancies between circumferential-radial shear
+ strain in model and experiment were reduced strongly by
+ increasing the transverse angle in the original model by
+ 25%. },
+ DOI = {http://dx.doi.org/10.1016/j.media.2006.04.001},
+ File = {ubbink06.pdf:ubbink06.pdf:PDF},
+ ISSN = {1361-8415},
+ Keywords = {Magnetic resonance tagging},
+ timestamp = {2015/09/22},
+ URL = {http://www.sciencedirect.com/science/article/pii/S1361841506000326}
+}
+
+@Article{ uniaxial-holzapfel-06,
+ Author = {Holzapfel, G.A.},
+ Title = {Determination of material models for arterial walls from
+ uniaxial extension tests and histological structure.},
+ Journal = {Journal of Theoretical Biology},
+ Volume = {238},
+ Year = {2006},
+ Number = {2},
+ Pages = {290-302},
+ pubmedid = {16043190},
+ ISSN = {0022-5193}
+}
+
+###Article{ uniaxial-holzapfel-06,
+ Author = {Holzapfel, G.A.},
+ Title = {Determination of material models for arterial walls from
+ uniaxial extension tests and histological structure.},
+ Journal = {Journal of Theoretical Biology},
+ Volume = {238},
+ Year = {2006},
+ Number = {2},
+ Pages = {290-302},
+ URL = {http://www.biomedsearch.com/nih/Determination-material-models-arterial-walls/16043190.html},
+ pubmedid = {16043190},
+ ISSN = {0022-5193}
+}
+
+@Article{ urbina2016phantom,
+ Author = {Urbina, J. and Sotelo, J. and Springmuller, D. and
+ Montalba, C. and Letelier, K. and Tejos, C. and
+ Irarrazaval, P. and Andia, M. and Razavi, R. and Valverde,
+ I. and Uribe, S.},
+ Title = {Realistic aortic phantom to study hemodynamics using MRI
+ and cardiac catheterization in normal and aortic
+ coarctation conditions},
+ Journal = {Journal of Magnetic Resonance Imaging},
+ ISSN = {1522-2586},
+ URL = {http://dx.doi.org/10.1002/jmri.25208},
+ DOI = {10.1002/jmri.25208},
+ Volume = {44},
+ Number = {3},
+ Pages = {683--697},
+ Year = {2016}
+}
+
+@Article{ urbina_realistic_2016,
+ Title = {Realistic Aortic Phantom to Study Hemodynamics Using
+ {{MRI}} and Cardiac Catheterization in Normal and Aortic
+ Coarctation Conditions},
+ Author = {Urbina, Jes{\'u}s and Sotelo, Julio A. and
+ Springm{\"u}ller, Daniel and Montalba, Cristian and
+ Letelier, Karis and Tejos, Cristi{\'a}n and
+ Irarr{\'a}zaval, Pablo and Andia, Marcelo E. and Razavi,
+ Reza and Valverde, Israel},
+ Year = {2016},
+ Volume = {44},
+ Pages = {683--697},
+ Journal = {Journal of Magnetic Resonance Imaging},
+ Number = {3}
+}
+
+@Article{ urchuk_mr_1994,
+ Title = {{{MR}} Measurement of Pulsatile Pressure Gradients},
+ Volume = {4},
+ Number = {6},
+ JournalTitle = {Journal of magnetic resonance imaging},
+ Year = {1994},
+ Pages = {829--836},
+ Author = {Urchuk, Steven N. and Plewes, Donald B.}
+}
+
+@Article{ uribe-beerbaum-etal-09,
+ Author = {Uribe, S. and Beerbaum, P. and S\o{}rensen, T. and
+ Rasmusson, A. and Razavi, R. and Schaeffter, T.},
+ Title = {Four-dimensional (4D) flow of the whole heart and great
+ vessels using real-time respiratory self-gating},
+ Journal = {Magnetic Resonance in Medicine},
+ Volume = {62},
+ Number = {4},
+ Publisher = {Wiley Subscription Services, Inc., A Wiley Company},
+ ISSN = {1522-2594},
+ DOI = {10.1002/mrm.22090},
+ Pages = {984--992},
+ Keywords = {4D flow imaging, whole heart, self-gating, Hemodynamic
+ assessment, congenital heart disease},
+ Year = {2009}
+}
+
+###Article{ uribe-beerbaum-etal-09,
+ Author = {Uribe, S. and Beerbaum, P. and S\o{}rensen, T. and
+ Rasmusson, A. and Razavi, R. and Schaeffter, T.},
+ Title = {Four-dimensional (4D) flow of the whole heart and great
+ vessels using real-time respiratory self-gating},
+ Journal = {Magnetic Resonance in Medicine},
+ Volume = {62},
+ Number = {4},
+ Publisher = {Wiley Subscription Services, Inc., A Wiley Company},
+ ISSN = {1522-2594},
+ URL = {http://dx.doi.org/10.1002/mrm.22090},
+ DOI = {10.1002/mrm.22090},
+ Pages = {984--992},
+ Keywords = {4D flow imaging, whole heart, self-gating, Hemodynamic
+ assessment, congenital heart disease},
+ Year = {2009}
+}
+
+@InProceedings{ urquiza-venere-clara-feijoo-00,
+ Address = {Barcelona},
+ Author = {Urquiza, S.A. and Venere, M.J. and Clara, F.M. and
+ Feij{\'o}o, R.A.},
+ BookTitle = {ECCOMAS},
+ Title = {Finite element (one-dimensional) haemodynamic model of the
+ human arterial system},
+ Year = {2000}
+}
+
+###InProceedings{ urquiza-venere-clara-feijoo-00,
+ Address = {Barcelona},
+ Author = {Urquiza, S.A. and Venere, M.J. and Clara, F.M. and
+ Feij{\'o}o, R.A.},
+ BookTitle = {ECCOMAS},
+ Title = {Finite element (one-dimensional) haemodynamic model of the
+ human arterial system},
+ Year = {2000}
+}
+
+@Article{ urquiza2014weak,
+ Title = {Weak imposition of the slip boundary condition on curved
+ boundaries for Stokes flow},
+ Author = {Urquiza, Jos{\'e} M and Garon, Andr{\'e} and Farinas,
+ Marie-Isabelle},
+ Journal = {Journal of Computational Physics},
+ Volume = {256},
+ Pages = {748--767},
+ Year = {2014},
+ Publisher = {Elsevier}
+}
+
+@Article{ urquizablanco_2006,
+ Author = "Urquiza, S.~A. and Blanco, P.~J. and V\'ene`re, M.~J. and
+ Feij\'oo, R.~A.",
+ Title = "Multidimensional modelling for the carotid artery blood
+ Ãow",
+ Journal = "Comput. Methods Appl. Mech. Engrg.",
+ Volume = "195",
+ Pages = "4002--4017",
+ Year = "2006"
+}
+
+###Article{ urquizablanco_2006,
+ Author = "Urquiza, S.~A. and Blanco, P.~J. and V\'ene`re, M.~J. and
+ Feij\'oo, R.~A.",
+ Title = "Multidimensional modelling for the carotid artery blood
+ Ãow",
+ Journal = "Comput. Methods Appl. Mech. Engrg.",
+ Volume = "195",
+ Pages = "4002--4017",
+ Year = "2006"
+}
+
+@Article{ utz1987aajr,
+ Title = {Cine MR determination of left ventricular ejection
+ fraction.},
+ Author = {Utz, J. A. and Herfkens, R. J. and Heinsimer, J. A. and
+ Bashore, T. and Califf, R. and Glover, G. and Pelc, N. and
+ Shimakawa, A.},
+ Journal = {AJR Am J Roentgenol},
+ Year = {1987},
+ Month = {May},
+ Number = {5},
+ Pages = {839--843},
+ Volume = {148},
+ Abstract = {Cine MR imaging provides tomographic images of the heart
+ with both high spatial and high temporal resolution. As
+ many as 32 images per cardiac cycle can be acquired with up
+ to four separate anatomic slices and a total imaging time
+ of 128 cardiac cycles. End-diastolic and end-systolic
+ volumes were determined in 11 patients, and ejection
+ fractions were calculated. The results correlated linearly
+ with those from cardiac catheterization (correlation
+ coefficient of .88). We conclude that cine MR imaging can
+ be used to obtain quantitative information about the heart
+ and has the potential to become a valuable noninvasive
+ means of cardiac evaluation.},
+ DOI = {10.2214/ajr.148.5.839},
+ Keywords = {Cardiac Catheterization; Evaluation Studies as Topic;
+ Heart Ventricles, radiography; Humans; Magnetic Resonance
+ Spectroscopy, diagnostic use/methods; Motion Pictures as
+ Topic; Myocardium, pathology; Stroke Volume},
+ Language = {eng},
+ medline-pst = {ppublish},
+ owner = {stoeckc},
+ pmid = {3495115},
+ timestamp = {2015.07.24},
+ URL = {http://dx.doi.org/10.2214/ajr.148.5.839}
+}
+
+@Article{ vadakkumpadan2012image,
+ Title = {Image-based estimation of ventricular fiber orientations
+ for personalized modeling of cardiac electrophysiology},
+ Author = {Vadakkumpadan, Fijoy and Arevalo, Hermenegild and
+ Ceritoglu, Can and Miller, Michael and Trayanova, Natalia},
+ Journal = {Medical Imaging, IEEE Transactions on},
+ Volume = {31},
+ Number = {5},
+ Pages = {1051--1060},
+ Year = {2012},
+ Publisher = {IEEE}
+}
+
+@Article{ vadakkumpadan2013patient,
+ Title = {Patient-specific modeling of the heart: estimation of
+ ventricular fiber orientations},
+ Author = {Vadakkumpadan, Fijoy and Arevalo, Hermenegild and
+ Trayanova, Natalia A},
+ Journal = {Journal of visualized experiments},
+ Number = {71},
+ Year = {2013},
+ Publisher = {NIH Public Access}
+}
+
+@Article{ vahanian2012eurheartj,
+ Author = { Vahanian, Alec and Alfieri, Ottavio and Andreotti,
+ Felicita and Antunes, Manuel J. and Bar{\'o}n-Esquivias,
+ Gonzalo and Baumgartner, Helmut and Borger, Michael Andrew
+ and Carrel, Thierry P. and De Bonis, Michele and
+ Evangelista, Arturo and Falk, Volkmar and Iung, Bernard and
+ Lancellotti, Patrizio and Pierard, Luc and Price, Susanna
+ and Sch{\"a}fers, Hans-Joachim and Schuler, Gerhard and
+ Stepinska, Janina and Swedberg, Karl and Takkenberg,
+ Johanna and Von Oppell, Ulrich Otto and Windecker, Stephan
+ and Zamorano, Jose Luis and Zembala, Marian and , and Bax,
+ Jeroen J. and Baumgartner, Helmut and Ceconi, Claudio and
+ Dean, Veronica and Deaton, Christi and Fagard, Robert and
+ Funck-Brentano, Christian and Hasdai, David and Hoes, Arno
+ and Kirchhof, Paulus and Knuuti, Juhani and Kolh, Philippe
+ and McDonagh, Theresa and Moulin, Cyril and Popescu, Bogdan
+ A. and Reiner, {\v Z}eljko and Sechtem, Udo and Sirnes, Per
+ Anton and Tendera, Michal and Torbicki, Adam and Vahanian,
+ Alec and Windecker, Stephan and , and Popescu, Bogdan A.
+ and Von Segesser, Ludwig and Badano, Luigi P. and Bunc,
+ Matja{\v z} and Claeys, Marc J. and Drinkovic, Niksa and
+ Filippatos, Gerasimos and Habib, Gilbert and Kappetein, A.
+ Pieter and Kassab, Roland and Lip, Gregory Y.H. and Moat,
+ Neil and Nickenig, Georg and Otto, Catherine M. and Pepper,
+ John and Piazza, Nicolo and Pieper, Petronella G. and
+ Rosenhek, Raphael and Shuka, Naltin and Schwammenthal, Ehud
+ and Schwitter, Juerg and Mas, Pilar Tornos and Trindade,
+ Pedro T. and Walther, Thomas},
+ Title = {Guidelines on the management of valvular heart disease
+ (version 2012)},
+ Volume = {33},
+ Number = {19},
+ Pages = {2451--2496},
+ Year = {2012},
+ DOI = {10.1093/eurheartj/ehs109},
+ Publisher = {The Oxford University Press},
+ ISSN = {0195-668X},
+ URL = {http://eurheartj.oxfordjournals.org/content/33/19/2451},
+ EPrint = {http://eurheartj.oxfordjournals.org/content/33/19/2451.full.pdf},
+ Journal = {European Heart Journal}
+}
+
+###Article{ vahanian2012eurheartj,
+ Author = { Vahanian, A. and Alfieri, O. and Andreotti, F. and et
+ al},
+ Title = {Guidelines on the management of valvular heart disease
+ (version 2012)},
+ Volume = {33},
+ Number = {19},
+ Pages = {2451--2496},
+ Year = {2012},
+ DOI = {10.1093/eurheartj/ehs109},
+ Publisher = {The Oxford University Press},
+ ISSN = {0195-668X},
+ EPrint = {http://eurheartj.oxfordjournals.org/content/33/19/2451.full.pdf},
+ Journal = {European Heart Journal}
+}
+
+@Article{ vahanian_guidelines_2012,
+ langid = {english},
+ Title = {Guidelines on the Management of Valvular Heart Disease
+ (Version 2012)},
+ Volume = {33},
+ ISSN = {1522-9645},
+ DOI = {10.1093/eurheartj/ehs109},
+ Number = {19},
+ JournalTitle = {European Heart Journal},
+ ShortJournal = {Eur. Heart J.},
+ Year = {2012-10},
+ Pages = {2451-2496},
+ Author = {Vahanian, Alec and Alfieri, Ottavio and Andreotti,
+ Felicita and Antunes, Manuel J. and Barón-Esquivias,
+ Gonzalo and Baumgartner, Helmut and Borger, Michael Andrew
+ and Carrel, Thierry P. and De Bonis, Michele and
+ Evangelista, Arturo and Falk, Volkmar and Iung, Bernard and
+ Lancellotti, Patrizio and Pierard, Luc and Price, Susanna
+ and Schäfers, Hans-Joachim and Schuler, Gerhard and
+ Stepinska, Janina and Swedberg, Karl and Takkenberg,
+ Johanna and Von Oppell, Ulrich Otto and Windecker, Stephan
+ and Zamorano, Jose Luis and Zembala, Marian},
+ EPrintType = {pmid},
+ EPrint = {22922415}
+}
+
+@PhdThesis{ valverde-11,
+ Author = {Valverde, I.},
+ School = {King's College of London},
+ Title = {Evaluation of Magnetic Resonance Imaging for Image-Based
+ Computational Fluid Dynamic Modelling in Aaortic
+ Coarctation},
+ Year = {2012}
+}
+
+###PhdThesis{ valverde-11,
+ Author = {Valverde, I.},
+ School = {King's College of London},
+ Title = {Evaluation of Magnetic Resonance Imaging for Image-Based
+ Computational Fluid Dynamic Modelling in Aaortic
+ Coarctation},
+ Year = {2012}
+}
+
+@InProceedings{ van-leer-83,
+ Author = {B. van Leer},
+ BookTitle = {Von Karman Institute, Lecture series},
+ Title = {Computational methods for ideal compressible flows},
+ Year = {1983}
+}
+
+###InProceedings{ van-leer-83,
+ Author = {B. van Leer},
+ BookTitle = {Von Karman Institute, Lecture series},
+ Title = {Computational methods for ideal compressible flows},
+ Year = {1983}
+}
+
+@Article{ van1986second,
+ Title = {A second-order accurate pressure-correction scheme for
+ viscous incompressible flow},
+ Author = {Van Kan, JJIM},
+ Journal = {SIAM Journal on Scientific and Statistical Computing},
+ Volume = {7},
+ Number = {3},
+ Pages = {870--891},
+ Year = {1986},
+ Publisher = {SIAM}
+}
+
+###Article{ van1986second,
+ Title = {A second-order accurate pressure-correction scheme for
+ viscous incompressible flow},
+ Author = {Van Kan, JJIM},
+ Journal = {SIAM Journal on Scientific and Statistical Computing},
+ Volume = {7},
+ Number = {3},
+ Pages = {870--891},
+ Year = {1986},
+ Publisher = {SIAM}
+}
+
+@Article{ veneziani_flow_2005,
+ Title = {Flow Rate Defective Boundary Conditions in Haemodynamics
+ Simulations},
+ Volume = {47},
+ Number = {8-9},
+ JournalTitle = {International Journal for Numerical Methods in Fluids},
+ Year = {2005},
+ Pages = {803--816},
+ Author = {Veneziani, Alessandro and Vergara, Christian}
+}
+
+@Article{ vergara-08,
+ Author = {Nobile, F. and Vergara, C.},
+ Journal = {SIAM J. Sci. Comput.},
+ Number = 2,
+ Pages = {731--763},
+ Title = {An effective fluid-structure interaction formulation for
+ vascular dynamics by generalized {R}obin conditions},
+ Volume = 30,
+ Year = 2008
+}
+
+###Article{ vergara-08,
+ Author = {Nobile, F. and Vergara, C.},
+ Journal = {SIAM J. Sci. Comput.},
+ Number = 2,
+ Pages = {731--763},
+ Title = {An effective fluid-structure interaction formulation for
+ vascular dynamics by generalized {R}obin conditions},
+ Volume = 30,
+ Year = 2008
+}
+
+@Article{ verhaert2011jci,
+ Title = {Direct T2 quantification of myocardial edema in acute
+ ischemic injury.},
+ Author = {Verhaert, David and Thavendiranathan, Paaladinesh and
+ Giri, Shivraman and Mihai, Georgeta and Rajagopalan, Sanjay
+ and Simonetti, Orlando P. and Raman, Subha V.},
+ Journal = {JACC Cardiovasc Imaging},
+ Year = {2011},
+ Month = {Mar},
+ Number = {3},
+ Pages = {269--278},
+ Volume = {4},
+ Abstract = {To evaluate the utility of rapid, quantitative T2 mapping
+ compared with conventional T2-weighted imaging in patients
+ presenting with various forms of acute myocardial
+ infarction.T2-weighted cardiac magnetic resonance (CMR)
+ identifies myocardial edema before the onset of
+ irreversible ischemic injury and has shown value in
+ risk-stratifying patients with chest pain. Clinical
+ acceptance of T2-weighted CMR has, however, been limited by
+ well-known technical problems associated with existing
+ techniques. T2 quantification has recently been shown to
+ overcome these problems; we hypothesized that T2
+ measurement in infarcted myocardium versus remote regions
+ versus zones of microvascular obstruction in acute
+ myocardial infarction patients could help reduce
+ uncertainty in interpretation of T2-weighted images.T2
+ values using a novel mapping technique were prospectively
+ recorded in 16 myocardial segments in 27 patients admitted
+ with acute myocardial infarction. Regional T2 values were
+ averaged in the infarct zone and remote myocardium, both
+ defined by a reviewer blinded to the results of T2 mapping.
+ Myocardial T2 was also measured in a group of 21 healthy
+ volunteers.T2 of the infarct zone was 69 ± 6 ms compared
+ with 56 ± 3.4 ms for remote myocardium (p < 0.0001). No
+ difference in T2 was observed between remote myocardium and
+ myocardium of healthy volunteers (56 ± 3.4 ms and 55.5 ±
+ 2.3 ms, respectively, p = NS). T2 mapping allowed for the
+ detection of edematous myocardium in 26 of 27 patients; by
+ comparison, segmented breath-hold T2-weighted short tau
+ inversion recovery images were negative in 7 and
+ uninterpretable in another 2 due to breathing artifacts.
+ Within the infarct zone, areas of microvascular obstruction
+ were characterized by a lower T2 value (59 ± 6 ms)
+ compared with areas with no microvascular obstruction (71.6
+ ± 10 ms, p < 0.0001). T2 mapping provided consistent
+ high-quality results in patients unable to breath-hold and
+ in those with irregular heart rhythms, in whom short tau
+ inversion recovery often yielded inadequate
+ imaging.Quantitative T2 mapping reliably identifies
+ myocardial edema without the limitations encountered by
+ T2-weighted short tau inversion recovery imaging, and may
+ therefore be clinically more robust in showing acute
+ ischemic injury.},
+ DOI = {10.1016/j.jcmg.2010.09.023},
+ Institution = {The Ohio State University, Columbus, Ohio 43210, USA.},
+ Keywords = {Acute Disease; Aged; Case-Control Studies; Edema,
+ diagnosis/etiology/pathology/physiopathology; Female;
+ Humans; Magnetic Resonance Imaging, Cine; Male; Middle
+ Aged; Myocardial Ischemia,
+ complications/diagnosis/pathology/physiopathology;
+ Myocardium, pathology; Observer Variation; Ohio; Predictive
+ Value of Tests; Prospective Studies; Reproducibility of
+ Results; Stroke Volume; Ventricular Function, Left},
+ Language = {eng},
+ medline-pst = {ppublish},
+ owner = {stoeckc},
+ pii = {S1936-878X(11)00004-0},
+ pmid = {21414575},
+ timestamp = {2015.07.24},
+ URL = {http://dx.doi.org/10.1016/j.jcmg.2010.09.023}
+}
+
+@Article{ vierendeels-00,
+ Author = {Vierendeels, J.A. and Riemslagh, K. and Dick, E. and
+ Verdonck, P.R.},
+ Journal = {J. Biomech. Eng. -- Trans. ASME 2000},
+ Number = {6},
+ Pages = {667--674},
+ Title = {Computer simulation of intraventricular flow and pressure
+ gradients during diastole},
+ Volume = {122},
+ Year = {2000}
+}
+
+###Article{ vierendeels-00,
+ Author = {Vierendeels, J.A. and Riemslagh, K. and Dick, E. and
+ Verdonck, P.R.},
+ Journal = {J. Biomech. Eng. -- Trans. ASME 2000},
+ Number = {6},
+ Pages = {667--674},
+ Title = {Computer simulation of intraventricular flow and pressure
+ gradients during diastole},
+ Volume = {122},
+ Year = {2000}
+}
+
+@InProceedings{ vierendeels-98,
+ Author = {Riemslagh, K. and Vierendeels, J.A. and Dick, },
+ BookTitle = {Computational Fluid Dynamics '98: Proceeding of the Fourth
+ European Computational fluid Dynamics Conference},
+ Pages = { 1040--1045},
+ Title = {Coupling of a {N}avier-{S}tokes solver and an elastic
+ boundary solver for unsteady problems},
+ Volume = {2},
+ Year = {1998}
+}
+
+###InProceedings{ vierendeels-98,
+ Author = {Riemslagh, K. and Vierendeels, J.A. and Dick, },
+ BookTitle = {Computational Fluid Dynamics '98: Proceeding of the Fourth
+ European Computational fluid Dynamics Conference},
+ Pages = { 1040--1045},
+ Title = {Coupling of a {N}avier-{S}tokes solver and an elastic
+ boundary solver for unsteady problems},
+ Volume = {2},
+ Year = {1998}
+}
+
+@Article{ vignon-clementel_outflow_2010,
+ Title = {Outflow Boundary Conditions for {{3D}} Simulations of
+ Non-Periodic Blood Flow and Pressure Fields in Deformable
+ Arteries},
+ Volume = {13},
+ Number = {5},
+ JournalTitle = {Computer methods in biomechanics and biomedical
+ engineering},
+ Year = {2010},
+ Pages = {625--640},
+ Author = {Vignon-Clementel, Irene E. and Figueroa, C. A. and Jansen,
+ K. E. and Taylor, C. A.}
+}
+
+@Article{ vignon_2006,
+ Author = "Vignon-Clementel, I.~E. and Figueroa, C.~A. and Jansen,
+ K.~E. and Taylor, C.~A.",
+ Title = "OutÃow boundary conditions for three-dimensional Ãnite
+ element modeling of blood Ãow and pressure in arteries",
+ Journal = "Comput. Methods Appl. Mech. Engrg.",
+ Volume = "195",
+ Pages = "3776Ã3796",
+ Year = "2006"
+}
+
+###Article{ vignon_2006,
+ Author = "Vignon-Clementel, I.~E. and Figueroa, C.~A. and Jansen,
+ K.~E. and Taylor, C.~A.",
+ Title = "OutÃow boundary conditions for three-dimensional Ãnite
+ element modeling of blood Ãow and pressure in arteries",
+ Journal = "Comput. Methods Appl. Mech. Engrg.",
+ Volume = "195",
+ Pages = "3776Ã3796",
+ Year = "2006"
+}
+
+@Article{ vignon_2010,
+ Author = "Vignon-Clementel, I.~E. and Figueroa, C.~A. and Jansen,
+ K.~E. and Taylor, C.~A.",
+ Title = {"Outflow boundary conditions for 3D simulations of
+ non-periodic blood flow and pressure fields in deformable
+ arteries"},
+ Journal = {Comp. Meth. Biomech. Biomed. Engrg.},
+ Volume = "13",
+ Pages = "625--640",
+ Year = "2010"
+}
+
+###Article{ vignon_2010,
+ Author = "Vignon-Clementel, I.~E. and Figueroa, C.~A. and Jansen,
+ K.~E. and Taylor, C.~A.",
+ Title = {"Outflow boundary conditions for 3D simulations of
+ non-periodic blood flow and pressure fields in deformable
+ arteries"},
+ Journal = {Comp. Meth. Biomech. Biomed. Engrg.},
+ Volume = "13",
+ Pages = "625--640",
+ Year = "2010"
+}
+
+@Article{ vignong-et-al-2011,
+ affiliation = {Mechanical and Aerospace Engineering Department,
+ University of California, San Diego, USA},
+ Author = {Esmaily Moghadam, M. and Bazilevs, Y. and Hsia, T.-Y. and
+ Vignon-Clementel, I. and Marsden, A. and Modeling of
+ Congenital Hearts Alliance},
+ ISSN = {0178-7675},
+ Issue = {3},
+ Journal = {Computational Mechanics},
+ keyword = {Engineering},
+ Note = {10.1007/s00466-011-0599-0},
+ Pages = {277-291},
+ Title = {A comparison of outlet boundary treatments for prevention
+ of backflow divergence with relevance to blood flow
+ simulations},
+ Volume = {48},
+ Year = {2011}
+}
+
+@PhdThesis{ virues-08,
+ Author = {Virues, J.},
+ School = {The University of British Columbia},
+ Title = {{Mechanical Properties of Arterial Wall}},
+ Year = {2008}
+}
+
+###PhdThesis{ virues-08,
+ Author = {Virues, J.},
+ School = {The University of British Columbia},
+ Title = {{Mechanical Properties of Arterial Wall}},
+ Year = {2008}
+}
+
+@Article{ vitiello_complications_1998,
+ Title = {Complications Associated with Pediatric Cardiac
+ Catheterization},
+ Volume = {32},
+ Number = {5},
+ JournalTitle = {Journal of the American College of Cardiology},
+ Year = {1998},
+ Pages = {1433--1440},
+ Author = {Vitiello, Renato and McCrindle, Brian W. and Nykanen,
+ David and Freedom, Robert M. and Benson, Lee N.}
+}
+
+@Article{ voelk-etal-05,
+ Author = {V\"olkl, Thomas and Degenhardt, Karin and Koch, Andreas
+ and Simm, Diemud and D\"orr, Helmuth and Singer, Helmut},
+ Title = {Cardiovascular anomalies in children and young adults with
+ Ullrich-Turner syndrome the Erlangen experience},
+ Journal = {Clinical Cardiology},
+ Volume = {28},
+ Year = {2005},
+ Number = {2},
+ Pages = {88-92},
+ pubmedid = {15757080},
+ ISSN = {0160-9289}
+}
+
+###Article{ voelk-etal-05,
+ Author = {V\"olkl, Thomas and Degenhardt, Karin and Koch, Andreas
+ and Simm, Diemud and D\"orr, Helmuth and Singer, Helmut},
+ Title = {Cardiovascular anomalies in children and young adults with
+ Ullrich-Turner syndrome the Erlangen experience},
+ Journal = {Clinical Cardiology},
+ Volume = {28},
+ Year = {2005},
+ Number = {2},
+ Pages = {88-92},
+ URL = {http://www.biomedsearch.com/nih/Cardiovascular-anomalies-in-children-young/15757080.html},
+ pubmedid = {15757080},
+ ISSN = {0160-9289}
+}
+
+@Article{ vriend2005,
+ Title = "Late complications in patients after repair of aortic
+ coarctation: implications for management ",
+ Journal = "International Journal of Cardiology ",
+ Volume = "101",
+ Number = "3",
+ Pages = "399 - 406",
+ Year = "2005",
+ Note = "",
+ ISSN = "0167-5273",
+ DOI = "http://dx.doi.org/10.1016/j.ijcard.2004.03.056",
+ URL = "http://www.sciencedirect.com/science/article/pii/S016752730400405X",
+ Author = "Joris W.J. Vriend and Barbara J.M. Mulder",
+ Keywords = "Hypertension ",
+ Abstract = "Survival of patients with aortic coarctation has
+ dramatically improved after surgical repair became
+ available and the number of patients who were operated and
+ reach adulthood is steadily increasing. However, life
+ expectancy is still not as normal as in unaffected peers.
+ Cardiovascular complications are frequent and require
+ indefinite follow-up. Concern falls chiefly in seven
+ categories: recoarctation, aortic aneurysm formation or
+ aortic dissection, coexisting bicuspid aortic valve,
+ endocarditis, premature coronary atherosclerosis,
+ cerebrovascular accidents and systemic hypertension. In
+ this review, these complications, with particular reference
+ to late hypertension, are discussed and strategies for the
+ clinical management of post-coarctectomy patients are
+ described. "
+}
+
+@Article{ vsvihlova2016determination,
+ Title = {Determination of pressure data from velocity data with a
+ view toward its application in cardiovascular mechanics.
+ {P}art 1. {T}heoretical considerations},
+ Author = {{\v{S}}vihlov{\'a}, H and Hron, J and M{\'a}lek, J and
+ Rajagopal, KR and Rajagopal, K},
+ Journal = {International Journal of Engineering Science},
+ Year = {2016, In press},
+ URL = {http://www.sciencedirect.com/science/article/pii/S0020722515001858},
+ Publisher = {Elsevier}
+}
+
+###Article{ vsvihlova2016determination,
+ Title = {Determination of pressure data from velocity data with a
+ view toward its application in cardiovascular mechanics.
+ {P}art 1. {T}heoretical considerations},
+ Author = {{\v{S}}vihlov{\'a}, H and Hron, J and M{\'a}lek, J and
+ Rajagopal, KR and Rajagopal, K},
+ Journal = {International Journal of Engineering Science},
+ Year = {2016, In press},
+ Publisher = {Elsevier}
+}
+
+@Article{ wake_choice_2009,
+ langid = {english},
+ Title = {Choice of {{In Vivo Versus Idealized Velocity Boundary
+ Conditions Influences Physiologically Relevant Flow
+ Patterns}} in a {{Subject}}-{{Specific Simulation}} of
+ {{Flow}} in the {{Human Carotid Bifurcation}}},
+ Volume = {131},
+ ISSN = {01480731},
+ URL = {http://Biomechanical.asmedigitalcollection.asme.org/article.aspx?articleid=1421173},
+ DOI = {10.1115/1.3005157},
+ Number = {2},
+ JournalTitle = {Journal of Biomechanical Engineering},
+ URLDate = {2019-02-21},
+ Year = {2009},
+ Pages = {021013},
+ Author = {Wake, Amanda K. and Oshinski, John N. and Tannenbaum,
+ Allen R. and Giddens, Don P.}
+}
+
+@Article{ walker2005jtcs,
+ Title = {Helical myofiber orientation after myocardial infarction
+ and left ventricular surgical restoration in sheep },
+ Author = {Joseph C. Walker and Julius M. Guccione and Yi Jiang and
+ Peng Zhang and Arthur W. Wallace and Edward W. Hsu and Mark
+ B. Ratcliffe},
+ Journal = {The Journal of Thoracic and Cardiovascular Surgery },
+ Year = {2005},
+ Number = {2},
+ Pages = {382 - 390},
+ Volume = {129},
+ Abstract = {Objectives It has been proposed that successful left
+ ventricular surgical restoration should restore normal
+ helical myofiber orientation. A magnetic resonance imaging
+ technique, magnetic resonance diffusion tensor imaging, has
+ been developed to measure myocyte orientation. By using
+ magnetic resonance diffusion tensor imaging, this study
+ tested the hypothesis that (1) myocyte orientation is
+ altered after anteroapical myocardial infarction and (2)
+ left ventricular surgical restoration restores normal helix
+ angles. Methods Thirteen sheep underwent anteroapical
+ myocardial infarction (25% of left ventricular mass). Ten
+ weeks later, animals underwent either aneurysm plication (n
+ = 8) or sham operations (n = 5). Six weeks after this
+ operation, hearts were excised, perfusion fixed in
+ diastole, and underwent magnetic resonance diffusion tensor
+ imaging. Hearts from normal sheep (n = 5) were also
+ harvested and imaged. Primary eigenvectors of the diffusion
+ tensors from magnetic resonance diffusion tensor imaging
+ were resolved into helix angles relative to a local wall
+ coordinate system. Transmural samples of the helix angles
+ were compared at the border zone of the aneurysm or repair
+ (or a comparable distance from the base in normal sheep), 1
+ cm below the valves, and halfway between. Results The
+ helical myofiber orientation did not change after
+ myocardial infarction. However, aneurysm plication caused
+ myofibers in the anterior border zone to rotate
+ counterclockwise (?35.6 ± 10.5°, P = .028) and those in
+ the lateral border zone to rotate clockwise (34.4 ± 8.1°,
+ P = .031). Conclusions Surgical restoration alters myocyte
+ orientation adjacent to the surgical repair. However,
+ myofiber orientation is not abnormal after myocardial
+ infarction, and thus surgical restoration techniques intent
+ on restoring normal helix angles might not be warranted. },
+ DOI = {http://dx.doi.org/10.1016/j.jtcvs.2004.06.006},
+ File = {walker05.pdf:walker05.pdf:PDF},
+ ISSN = {0022-5223},
+ timestamp = {2015/09/22},
+ URL = {http://www.sciencedirect.com/science/article/pii/S0022522304008359}
+}
+
+@InProceedings{ wall-mok-ramm-99,
+ Author = {Mok, D. P. and Wall, W. A. and Ramm, E.},
+ BookTitle = {Proceedings of the European Conference on Computational
+ Mechanics},
+ code = {fsi5},
+ Editor = {W. Wunderlich},
+ Publisher = {ECCM'99, TU Munich},
+ Title = {Partitioned analysis approach for the transient, coupled
+ response of viscous fluids and flexible structures},
+ Year = {1999}
+}
+
+###InProceedings{ wall-mok-ramm-99,
+ Author = {Mok, D. P. and Wall, W. A. and Ramm, E.},
+ BookTitle = {Proceedings of the European Conference on Computational
+ Mechanics},
+ code = {fsi5},
+ Editor = {W. Wunderlich},
+ Publisher = {ECCM'99, TU Munich},
+ Title = {Partitioned analysis approach for the transient, coupled
+ response of viscous fluids and flexible structures},
+ Year = {1999}
+}
+
+@Article{ wall2010baci,
+ Title = {Baci: a parallel multiphysics finite element environment},
+ Author = {Wall, WA and Gee, MW},
+ Journal = {Institute for Computational Mechanics, Technische
+ Universit{\"a}t M{\"u}nchen},
+ Year = {2010}
+}
+
+@Article{ wall2010ijnmbe,
+ Title = {Towards a comprehensive computational model for the
+ respiratory system},
+ Author = {Wall, Wolfgang A and Wiechert, Lena and Comerford, Andrew
+ and Rausch, Sophie},
+ Journal = {International Journal for Numerical Methods in Biomedical
+ Engineering},
+ Volume = {26},
+ Number = {7},
+ Pages = {807--827},
+ Year = {2010},
+ Publisher = {Wiley Online Library}
+}
+
+@Article{ wang2009,
+ Title = "Modelling passive diastolic mechanics with quantitative
+ MRI of cardiac structure and function",
+ Journal = "Medical Image Analysis",
+ Volume = "13",
+ Number = "5",
+ Pages = "773 - 784",
+ Year = "2009",
+ Note = "Includes Special Section on the 12th
+ International Conference on Medical Imaging and Computer
+ Assisted Intervention",
+ ISSN = "1361-8415",
+ DOI = "10.1016/j.media.2009.07.006",
+ Author = "Vicky Y. Wang and H.I. Lam and Daniel B. Ennis and Brett
+ R. Cowan and Alistair A. Young and Martyn P. Nash",
+ Keywords = "Material parameter estimation"
+}
+
+@Article{ wang2011pulmonary,
+ Title = {Pulmonary vascular wall stiffness: an important
+ contributor to the increased right ventricular afterload
+ with pulmonary hypertension},
+ Author = {Wang, Zhijie and Chesler, Naomi C},
+ Journal = {Pulmonary circulation},
+ Volume = {1},
+ Number = {2},
+ Pages = {212--223},
+ Year = {2011},
+ Publisher = {SAGE Publications Sage UK: London, England}
+}
+
+@Article{ wang2014bmmmb,
+ Title = {A modified Holzapfel-Ogden law for a residually stressed
+ finite strain model of the human left ventricle in
+ diastole},
+ Author = {Wang, HM and Luo, XY and Gao, H and Ogden, RW and
+ Griffith, BE and Berry, C and Wang, TJ},
+ Journal = {Biomechanics and modeling in mechanobiology},
+ Volume = {13},
+ Number = {1},
+ Pages = {99--113},
+ Year = {2014},
+ Publisher = {Springer}
+}
+
+@Article{ warburton-hesthaven-03,
+ Author = {Warburton, T. and Hesthaven, J. S.},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Number = {25},
+ Pages = {2765--2773},
+ Title = {On the constants in {$hp$}-finite element trace inverse
+ inequalities},
+ Volume = {192},
+ Year = {2003}
+}
+
+###Article{ warburton-hesthaven-03,
+ Author = {Warburton, T. and Hesthaven, J. S.},
+ Journal = {Comput. Methods Appl. Mech. Engrg.},
+ Number = {25},
+ Pages = {2765--2773},
+ Title = {On the constants in {$hp$}-finite element trace inverse
+ inequalities},
+ Volume = {192},
+ Year = {2003}
+}
+
+@Article{ warnes2008acc,
+ Title = {{ACC}/{AHA} 2008 Guidelines for the Management of Adults
+ With Congenital Heart Disease},
+ Author = {Warnes, Carole A and Williams, Roberta G and Bashore,
+ Thomas M and others},
+ Journal = {Journal of the American College of Cardiology},
+ Volume = {52},
+ Number = {23},
+ Pages = {e143--e263},
+ Year = {2008},
+ Publisher = {Am Coll Cardio Found}
+}
+
+###Article{ warnes2008acc,
+ Title = {{ACC}/{AHA} 2008 Guidelines for the Management of Adults
+ With Congenital Heart Disease},
+ Author = {Warnes, Carole A and Williams, Roberta G and Bashore,
+ Thomas M and Child, John S and Connolly, Heidi M and
+ Dearani, Joseph A and del Nido, Pedro and Fasules, James W
+ and Graham, Thomas P and Hijazi, Ziyad M and others},
+ Journal = {Journal of the American College of Cardiology},
+ Volume = {52},
+ Number = {23},
+ Pages = {e143--e263},
+ Year = {2008},
+ Publisher = {Am Coll Cardio Found}
+}
+
+@Article{ warnes_acc/aha_2008,
+ Title = {{{ACC}}/{{AHA}} 2008 {{Guidelines}} for the {{Management}}
+ of {{Adults With Congenital Heart Disease}}: {{Executive
+ Summary}}: {{A Report}} of the {{American College}} of
+ {{Cardiology}}/{{American Heart Association Task Force}} on
+ {{Practice Guidelines}} ({{Writing Committee}} to {{Develop
+ Guidelines}} for the {{Management}} of {{Adults With
+ Congenital Heart Disease}}) {{Developed}} in
+ {{Collaboration With}} the {{American Society}} of
+ {{Echocardiography}}, {{Heart Rhythm Society}},
+ {{International Society}} for {{Adult Congenital Heart
+ Disease}}, {{Society}} for {{Cardiovascular Angiography}}
+ and {{Interventions}}, and {{Society}} of {{Thoracic
+ Surgeons}}},
+ ShortTitle = {{{ACC}}/{{AHA}} 2008 {{Guidelines}} for the {{Management}}
+ of {{Adults With Congenital Heart Disease}}},
+ Author = {Warnes, Carole A. and Williams, Roberta G. and Bashore,
+ Thomas M. and Child, John S. and Connolly, Heidi M. and
+ Dearani, Joseph A. and Del Nido, Pedro and Fasules, James
+ W. and Graham, Thomas P. and Hijazi, Ziyad M.},
+ Year = {2008},
+ Volume = {52},
+ Pages = {1890--1947},
+ Journal = {Journal of the American College of Cardiology},
+ Number = {23}
+}
+
+@Article{ watton2004bmm,
+ Title = {A mathematical model for the growth of the abdominal
+ aortic aneurysm},
+ Author = {Watton, P.N. and Hill, N.A. and Heil, M.},
+ Journal = {Biomechanics and Modeling in Mechanobiology},
+ Year = {2004},
+ Number = {2},
+ Pages = {98-113},
+ Volume = {3},
+ DOI = {10.1007/s10237-004-0052-9},
+ ISSN = {1617-7959},
+ Language = {English},
+ Publisher = {Springer-Verlag},
+ timestamp = {2015/09/22},
+ URL = {http://dx.doi.org/10.1007/s10237-004-0052-9}
+}
+
+@Article{ watton2011bmm,
+ Title = {Modelling evolution and the evolving mechanical
+ environment of saccular cerebral aneurysms},
+ Author = {Watton, P.N. and Selimovic, A. and Raberger, N.B. and
+ Huang, P. and Holzapfel, G.A. and Ventikos, Y.},
+ Journal = {Biomechanics and Modeling in Mechanobiology},
+ Year = {2011},
+ Number = {1},
+ Pages = {109-132},
+ Volume = {10},
+ DOI = {10.1007/s10237-010-0221-y},
+ ISSN = {1617-7959},
+ Keywords = {Aneurysm; Finite elasticity; Cerebral; Growth;
+ Remodelling; Haemodynamics; Cyclic stretch; WSS; WSSG; OSI;
+ RRT},
+ Language = {English},
+ Publisher = {Springer-Verlag},
+ timestamp = {2015/09/22},
+ URL = {http://dx.doi.org/10.1007/s10237-010-0221-y}
+}
+
+@Article{ wen_investigation_2010,
+ Title = {Investigation of Pulsatile Flowfield in Healthy Thoracic
+ Aorta Models},
+ Author = {Wen, Chih-Yung and Yang, An-Shik and Tseng, Li-Yu and
+ Chai, Jyh-Wen},
+ Year = {2010},
+ Volume = {38},
+ Pages = {391--402},
+ Journal = {Annals of biomedical engineering},
+ Number = {2}
+}
+
+@Article{ wendell2012including,
+ Title = {Including aortic valve morphology in computational fluid
+ dynamics simulations: Initial findings and application to
+ aortic coarctation},
+ Author = {Wendell, D.C. and Samyn, M.M. and Cava, J.R. and Ellwein,
+ L.M. and Krolikowski, M.M. and Gandy, K.L. and Pelech, A.N.
+ and Shadden, S.C. and LaDisa, J.F.},
+ Journal = {Medical Engineering \& Physics},
+ Year = {2012},
+ Abstract = {Computational fluid dynamics (CFD) simulations quantifying
+ thoracic aortic flow patterns have not included
+ disturbances from the aortic valve (AoV). 80\% of patients
+ with aortic coarctation (CoA) have a bicuspid aortic valve
+ (BAV) which may cause adverse flow patterns contributing to
+ morbidity. Our objectives were to develop a method to
+ account for the AoV in CFD simulations, and quantify its
+ impact on local hemodynamics. The method developed
+ facilitates segmentation of the AoV, spatiotemporal
+ interpolation of segments, and anatomic positioning of
+ segments at the CFD model inlet. The AoV was included in
+ CFD model examples of a normal (tricuspid AoV) and a
+ post-surgical CoA patient (BAV). Velocity, turbulent
+ kinetic energy (TKE), time-averaged wall shear stress
+ (TAWSS), and oscillatory shear index (OSI) results were
+ compared to equivalent simulations using a plug inlet
+ profile. The plug inlet greatly underestimated TKE for both
+ examples. TAWSS differences extended throughout the
+ thoracic aorta for the CoA BAV, but were limited to the
+ arch for the normal example. OSI differences existed mainly
+ in the ascending aorta for both cases. The impact of AoV
+ can now be included with CFD simulations to identify
+ regions of deleterious hemodynamics thereby advancing
+ simulations of the thoracic aorta one step closer to
+ reality.},
+ Publisher = {Elsevier}
+}
+
+###Article{ wendell2012including,
+ Title = {Including aortic valve morphology in computational fluid
+ dynamics simulations: Initial findings and application to
+ aortic coarctation},
+ Author = {Wendell, D.C. and Samyn, M.M. and Cava, J.R. and Ellwein,
+ L.M. and Krolikowski, M.M. and Gandy, K.L. and Pelech, A.N.
+ and Shadden, S.C. and LaDisa, J.F.},
+ Journal = {Medical Engineering \& Physics},
+ Year = {2012},
+ Abstract = {Computational fluid dynamics (CFD) simulations quantifying
+ thoracic aortic flow patterns have not included
+ disturbances from the aortic valve (AoV). 80\% of patients
+ with aortic coarctation (CoA) have a bicuspid aortic valve
+ (BAV) which may cause adverse flow patterns contributing to
+ morbidity. Our objectives were to develop a method to
+ account for the AoV in CFD simulations, and quantify its
+ impact on local hemodynamics. The method developed
+ facilitates segmentation of the AoV, spatiotemporal
+ interpolation of segments, and anatomic positioning of
+ segments at the CFD model inlet. The AoV was included in
+ CFD model examples of a normal (tricuspid AoV) and a
+ post-surgical CoA patient (BAV). Velocity, turbulent
+ kinetic energy (TKE), time-averaged wall shear stress
+ (TAWSS), and oscillatory shear index (OSI) results were
+ compared to equivalent simulations using a plug inlet
+ profile. The plug inlet greatly underestimated TKE for both
+ examples. TAWSS differences extended throughout the
+ thoracic aorta for the CoA BAV, but were limited to the
+ arch for the normal example. OSI differences existed mainly
+ in the ascending aorta for both cases. The impact of AoV
+ can now be included with CFD simulations to identify
+ regions of deleterious hemodynamics thereby advancing
+ simulations of the thoracic aorta one step closer to
+ reality.},
+ Publisher = {Elsevier}
+}
+
+@Article{ westerhof_arterial_2009,
+ Title = {The Arterial Windkessel},
+ Volume = {47},
+ Number = {2},
+ JournalTitle = {Medical \& biological engineering \& computing},
+ Year = {2009},
+ Pages = {131--141},
+ Author = {Westerhof, Nico and Lankhaar, Jan-Willem and Westerhof,
+ Berend E.}
+}
+
+@Article{ white1987circ,
+ Title = {Left ventricular end-systolic volume as the major
+ determinant of survival after recovery from myocardial
+ infarction.},
+ Author = {White, H D and Norris, R M and Brown, M A and Brandt, P W
+ and Whitlock, R M and Wild, C J},
+ Journal = {Circulation},
+ Year = {1987},
+ Number = {1},
+ Pages = {44-51},
+ Volume = {76},
+ Abstract = {Impairment of left ventricular function is the major
+ predictor of mortality after acute myocardial infarction,
+ but it is not known whether this is best described by
+ ejection fraction or by end-systolic or end-diastolic
+ volume. We measured volumes, ejection fractions, and
+ severity of coronary arterial occlusions and stenoses in
+ 605 male patients under 60 years of age at 1 to 2 months
+ after a first (n = 443) or recurrent (n = 162) myocardial
+ infarction and followed these patients for a mean of 78
+ months for survivors (range 15 to 165 months). There were
+ 101 cardiac deaths, 71 (70%) of which were sudden
+ (instantaneous or found dead). Multivariate analysis with
+ log rank testing and the Cox proportional hazards model
+ showed that end-systolic volume (chi 2 = 82.9) had greater
+ predictive value for survival than end-diastolic volume
+ (chi 2 = 59.0) or ejection fraction (chi 2 = 46.6), whereas
+ stepwise analysis showed that once the relationship between
+ survival and end-systolic volume had been fitted, there was
+ no additional significant predictive information in either
+ end-diastolic volume or ejection fraction. Severity of
+ coronary occlusions and stenoses showed additional
+ prediction of only borderline significance (p = .04 in one
+ analysis), but continued cigarette smoking did remain an
+ independent risk factor after stepwise analysis. For a
+ subset of patients (n = 200) who had taken part in a
+ randomized trial of coronary artery surgery after recovery
+ from infarction, surgical "intention to treat" showed no
+ predictive value.(ABSTRACT TRUNCATED AT 250 WORDS)},
+ DOI = {10.1161/01.CIR.76.1.44},
+ EPrint = {http://circ.ahajournals.org/content/76/1/44.full.pdf+html},
+ File = {white87.pdf:white87.pdf:PDF},
+ timestamp = {2015/09/13},
+ URL = {http://circ.ahajournals.org/content/76/1/44.abstract}
+}
+
+@Article{ white2008lancet,
+ Title = {Acute myocardial infarction },
+ Author = {Harvey D White and Derek P Chew},
+ Journal = {The Lancet },
+ Year = {2008},
+ Number = {9638},
+ Pages = {570 - 584},
+ Volume = {372},
+ Abstract = {Summary Modern management of acute myocardial infarction
+ is built on a clinical evidence base drawn from many
+ studies undertaken over the past three decades. The
+ evolution in clinical practice has substantially reduced
+ mortality and morbidity associated with the condition. Key
+ to this success is the effective integration of
+ antithrombotic therapy combined with timely reperfusion,
+ either primary percutaneous coronary intervention or
+ fibrinolysis for ST-elevation myocardial infarction, and
+ invasive investigation and revascularisation for
+ non-ST-elevation myocardial infarction, underpinned by risk
+ stratification and optimised systems of care. After the
+ development of troponin assays for the detection of
+ myonecrosis, the universal definition and classification of
+ myocardial infarction now indicates the underlying
+ pathophysiology. Additionally, an increasing appreciation
+ of the importance of adverse events, such as bleeding, has
+ emerged. Remaining challenges include the effective
+ translation of this evidence to all patients with
+ myocardial infarction, especially to those not well
+ represented in clinical trials who remain at increased risk
+ of adverse events, such as elderly patients and those with
+ renal failure. On a global level, the epidemic of diabetes
+ and obesity in the developed world and the transition from
+ infectious diseases to cardiovascular disease in the
+ developing world will place an increasing demand on
+ health-care infrastructures required to deliver
+ time-dependent and resource-intensive care. This Seminar
+ discusses the underlying pathophysiology, evolving
+ perspectives on diagnosis, risk stratification, and the
+ invasive and pharmacological management of myocardial
+ infarction. },
+ DOI = {http://dx.doi.org/10.1016/S0140-6736(08)61237-4},
+ File = {white08.pdf:white08.pdf:PDF},
+ ISSN = {0140-6736},
+ timestamp = {2015/09/14},
+ URL = {http://www.sciencedirect.com/science/article/pii/S0140673608612374}
+}
+
+@Book{ whitham-99,
+ Address = {New York},
+ Author = {Whitham, G. B.},
+ Publisher = {John Wiley \& Sons Inc.},
+ Title = {Linear and nonlinear waves},
+ Year = {1999}
+}
+
+###Book{ whitham-99,
+ Address = {New York},
+ Author = {Whitham, G. B.},
+ Publisher = {John Wiley \& Sons Inc.},
+ Title = {Linear and nonlinear waves},
+ Year = {1999}
+}
+
+@Report{ who_global_2018,
+ Location = {{Geneva}},
+ Title = {Global {{Heath Estimates}} 2016: {{Deaths}} by {{Cause}},
+ {{Age}}, {{Sex}}, by {{Country}} and by {{Region}},
+ 2000--2016},
+ Institution = {{World Health Organization}},
+ Year = {2018},
+ Author = {{WHO}}
+}
+
+@Article{ wick2011phd,
+ Title = {Adaptive finite element simulation of fluid-structure
+ interaction with application to heart-valve dynamics},
+ Author = {Wick, Thomas},
+ Year = {2011},
+ Journal = {Ph.D Thesis, University of Heidelberg}
+}
+
+@article{wick2020optimizationFSI,
+ title={Optimization with nonstationary, nonlinear monolithic fluid-structure interaction},
+ author={Wick, Thomas and Wollner, Winnifried},
+ journal={International Journal for Numerical Methods in Engineering},
+ year={2020},
+ publisher={Wiley Online Library}
+}
+
+@Article{ wiechert2009jem,
+ Title = {Modeling the mechanical behavior of lung tissue at the
+ microlevel},
+ Author = {Wiechert, Lena and Metzke, Robert and Wall, Wolfgang A},
+ Journal = {Journal of engineering mechanics},
+ Volume = {135},
+ Number = {5},
+ Pages = {434--438},
+ Year = {2009},
+ Publisher = {American Society of Civil Engineers}
+}
+
+@Article{ wiegel-perelson-82,
+ Annote = {blood, aggregation, red cells, rouleaux},
+ Author = {Wiegel, F.W. and Perelson, A.S.},
+ code = {cel6},
+ Journal = {J. Stat. Phys.},
+ Number = {4},
+ Pages = {813-848},
+ Title = {Statistical mechanics of red blood cell aggregation: the
+ distribution of rouleaux in thermal equilibrium},
+ Volume = {29},
+ Year = {1982}
+}
+
+###Article{ wiegel-perelson-82,
+ Annote = {blood, aggregation, red cells, rouleaux},
+ Author = {Wiegel, F.W. and Perelson, A.S.},
+ code = {cel6},
+ Journal = {J. Stat. Phys.},
+ Number = {4},
+ Pages = {813-848},
+ Title = {Statistical mechanics of red blood cell aggregation: the
+ distribution of rouleaux in thermal equilibrium},
+ Volume = {29},
+ Year = {1982}
+}
+
+@Article{ wigstroem1996mrm,
+ Title = {Temporally resolved 3D phase-contrast imaging.},
+ Author = {Wigstr{\"{o}}m, L. and Sj{\"{o}}qvist, L. and Wranne, B.},
+ Journal = {Magn Reson Med},
+ Year = {1996},
+ Month = {Nov},
+ Number = {5},
+ Pages = {800--803},
+ Volume = {36},
+ Abstract = {A conventional 3D phase contrast acquisition generates
+ images with good spatial resolution, but often gives rise
+ to artifacts due to pulsatile flow. 2D cine phase contrast,
+ on the other hand, can register dynamic flow, but has a
+ poor spatial resolution perpendicular to the imaging plane.
+ A combination of both high spatial and temporal resolution
+ may be advantageous in some cases, both in quantitative
+ flow measurements and in MR angiography. The described 3D
+ cine phase contrast pulse sequence creates a temporally
+ resolved series of 3D data sets with velocity encoded
+ data.},
+ Institution = {Department of Clinical Physiology, Faculty of Health
+ Sciences, Linköping University, Sweden.},
+ Keywords = {Electrocardiography; Humans; Magnetic Resonance
+ Angiography, methods; Magnetic Resonance Imaging, Cine,
+ methods},
+ Language = {eng},
+ medline-pst = {ppublish},
+ owner = {stoeckc},
+ pmid = {8916033},
+ timestamp = {2015.07.28}
+}
+
+@Article{ wilkins2017european,
+ Title = {European cardiovascular disease statistics 2017},
+ Author = {Wilkins, Elizabeth and Wilson, L and Wickramasinghe,
+ Kremlin and Bhatnagar, Prachi and Leal, Jose and
+ Luengo-Fernandez, Ramon and Burns, R and Rayner, Mike and
+ Townsend, Nick},
+ Year = {2017},
+ Publisher = {European Heart Network},
+ Note = {EHN Registration No 16416/93}
+}
+
+@Report{ wilkins_european_2017,
+ Title = {European Cardiovascular Disease Statistics 2017},
+ Year = {2017},
+ Author = {Wilkins, Elizabeth and Wilson, L. and Wickramasinghe,
+ Kremlin and Bhatnagar, Prachi and Leal, Jose and
+ Luengo-Fernandez, Ramon and Burns, R. and Rayner, Mike and
+ Townsend, Nick},
+ Institution = {European Heart Network},
+ Location = {Brussels}
+}
+
+@InProceedings{ wilson-wang-dutton-taylor-01,
+ Address = {London, UK},
+ Author = {Wilson,, Nathan and Wang,, Kenneth and Dutton,, Robert W.
+ and Taylor,, Charles},
+ BookTitle = {MICCAI '01: Proceedings of the 4th International
+ Conference on Medical Image Computing and Computer-Assisted
+ Intervention},
+ date-added = {2009-03-10 12:15:56 -0700},
+ date-modified = {2009-03-10 12:16:40 -0700},
+ ISBN = {3-540-42697-3},
+ Pages = {449--456},
+ Publisher = {Springer-Verlag},
+ Title = {A Software Framework for Creating Patient Specific
+ Geometric Models from Medical Imaging Data for Simulation
+ Based Medical Planning of Vascular Surgery},
+ Year = {2001}
+}
+
+###InProceedings{ wilson-wang-dutton-taylor-01,
+ Address = {London, UK},
+ Author = {Wilson,, Nathan and Wang,, Kenneth and Dutton,, Robert W.
+ and Taylor,, Charles},
+ BookTitle = {MICCAI '01: Proceedings of the 4th International
+ Conference on Medical Image Computing and Computer-Assisted
+ Intervention},
+ date-added = {2009-03-10 12:15:56 -0700},
+ date-modified = {2009-03-10 12:16:40 -0700},
+ ISBN = {3-540-42697-3},
+ Pages = {449--456},
+ Publisher = {Springer-Verlag},
+ Title = {A Software Framework for Creating Patient Specific
+ Geometric Models from Medical Imaging Data for Simulation
+ Based Medical Planning of Vascular Surgery},
+ Year = {2001}
+}
+
+@Article{ wilson2012procrsoc,
+ Title = {Parametric study of effects of collagen turnover on the
+ natural history of abdominal aortic aneurysms},
+ Author = {Wilson, J. S. and Baek, S. and Humphrey, J. D.},
+ Journal = {Proceedings of the Royal Society of London A:
+ Mathematical, Physical and Engineering Sciences},
+ Year = {2012},
+ Number = {2150},
+ Volume = {469},
+ Abstract = {Abdominal aortic aneurysms (AAAs) are characterized by
+ significant changes in the architecture of the aortic wall,
+ notably, loss of functional elastin and smooth muscle.
+ Because collagen is the principal remaining load-bearing
+ constituent of the aneurysmal wall, its turnover must play
+ a fundamental role in the natural history of the lesion.
+ Nevertheless, detailed investigations of the effects of
+ different aspects of collagen turnover on AAA development
+ are lacking. A finite-element membrane model of the growth
+ and remodelling of idealized AAAs was thus used to
+ investigate parametrically four of the primary aspects of
+ collagen turnover: rates of production, half-life,
+ deposition stretch (prestretch) and material stiffness. The
+ predicted rates of aneurysmal expansion and spatio-temporal
+ changes in wall thickness, biaxial stresses and maximum
+ collagen fibre stretch at the apex of the lesion depended
+ strongly on all four factors, as did the predicted clinical
+ endpoints (i.e. arrest, progressive expansion or rupture).
+ Collagen turnover also affected the axial expansion,
+ largely due to mechanical changes within the shoulder
+ region of the lesion. We submit, therefore, that assessment
+ of rupture risk could be improved by future experiments
+ that delineate and quantify different aspects of
+ patient-specific collagen turnover and that such
+ understanding could lead to new targeted therapeutics.},
+ DOI = {10.1098/rspa.2012.0556},
+ File = {wilson12.pdf:wilson12.pdf:PDF},
+ ISSN = {1364-5021},
+ Publisher = {The Royal Society},
+ timestamp = {2015/09/22}
+}
+
+@Article{ wipperman-1985,
+ Author = {Wippermann, F.K.},
+ Journal = {Journal of Fluid Mechanics},
+ Pages = {487--501},
+ Title = {On the fluid dynamics of the aortic valve},
+ Volume = {159},
+ Year = {1985}
+}
+
+###Article{ wipperman-1985,
+ Author = {Wippermann, F.K.},
+ Journal = {Journal of Fluid Mechanics},
+ Pages = {487--501},
+ Title = {On the fluid dynamics of the aortic valve},
+ Volume = {159},
+ Year = {1985}
+}
+
+@Article{ wong-kuhl-12,
+ Author = {Wong, J. and Kuhl, E.},
+ Title = {Generating fibre orientation maps in human heart models
+ using Poisson interpolation},
+ Journal = {Computer Methods in Biomechanics and Biomedical
+ Engineering},
+ Pages = {1-10},
+ Year = {2012}
+}
+
+@Article{ wong2004ajc,
+ Title = {Relation of left ventricular sphericity to 10-year
+ survival after acute myocardial infarction },
+ Author = {Selwyn P. Wong and John K. French and Anna-Maria Lydon and
+ Samuel O.M. Manda and Wanzhen Gao and Noel G. Ashton and
+ Harvey D. White},
+ Journal = {The American Journal of Cardiology },
+ Year = {2004},
+ Number = {10},
+ Pages = {1270 - 1275},
+ Volume = {94},
+ Abstract = {After ST-elevation myocardial infarction, the association
+ between left ventricular sphericity (measured by biplane
+ ventriculography) and survival rate at a median of 6.5
+ years was determined in 825 patients. The highest tertileof
+ sphericity (vs the lowest and middle tertiles) was
+ associated with a decreased 10-year survival rate in
+ patients who had anterior myocardial infarction (p =
+ 0.002), inferior myocardial infarction (p = 0.011),
+ Thrombolysis In Myocardial Infarction (TIMI) grade 3 flow
+ (p = 0.005), or \{TIMI\} grade 0 to 2 flow (p = 0.001) in
+ the infarct artery. The independent multivariate predictors
+ of a 10-year survival rate were ejection fraction (p =
+ 0.002), treadmill exercise duration (p = 0.004), biplane
+ left ventricular sphericity index (p = 0.032), age (p =
+ 0.043), and end-systolic volume index (p = 0.047), but not
+ \{TIMI\} flow grade. },
+ DOI = {http://dx.doi.org/10.1016/j.amjcard.2004.07.110},
+ File = {wong04.pdf:wong04.pdf:PDF},
+ ISSN = {0002-9149},
+ timestamp = {2015/09/20},
+ URL = {http://www.sciencedirect.com/science/article/pii/S000291490401224X}
+}
+
+@Article{ woodrum_romano_lerman_pandya_brosh_rossman_lerman_ehman_2006,
+ Title = {Vascular wall elasticity measurement by magnetic resonance
+ imaging.},
+ Volume = {56},
+ Number = {3},
+ Journal = {Magnetic Resonance in Medicine},
+ Author = {Woodrum, D.A. and Romano, A.J. and Lerman, A. and Pandya,
+ U.H. and Brosh, D. and Rossman, P.J. and Lerman, L.O. and
+ Ehman, R.L.},
+ Year = {2006},
+ Pages = {593--600}
+}
+
+###Article{ woodrum_romano_lerman_pandya_brosh_rossman_lerman_ehman_2006,
+ Title = {Vascular wall elasticity measurement by magnetic resonance
+ imaging.},
+ Volume = {56},
+ URL = {http://www.scopus.com/inward/record.url?eid=2-s2.0-33748338132&partnerID=40&md5=87accf007d9aa1c5f05229d032bb4998},
+ Number = {3},
+ Journal = {Magnetic Resonance in Medicine},
+ Author = {Woodrum, D.A. and Romano, A.J. and Lerman, A. and Pandya,
+ U.H. and Brosh, D. and Rossman, P.J. and Lerman, L.O. and
+ Ehman, R.L.},
+ Year = {2006},
+ Pages = {593--600}
+}
+
+@Article{ wu2007mrm,
+ Title = {MR diffusion tensor imaging study of postinfarct
+ myocardium structural remodeling in a porcine model.},
+ Author = {Wu, Ed X. and Wu, Yin and Nicholls, John M. and Wang, Jie
+ and Liao, Songyan and Zhu, Shuguang and Lau, Chu-Pak and
+ Tse, Hung-Fat},
+ Journal = {Magn Reson Med},
+ Year = {2007},
+ Month = {Oct},
+ Number = {4},
+ Pages = {687--695},
+ Volume = {58},
+ __markedentry = {[stoeckc:]},
+ Abstract = {This study aimed to investigate postinfarct left
+ ventricular (LV) fiber structural alterations by ex vivo
+ diffusion tensor imaging (DTI) in a porcine heart model. In
+ vivo cardiac MR imaging was first performed to measure
+ ventricular function in six adult pigs with septal
+ infarction near apex induced by the LAD ligation 13 weeks
+ earlier. Hearts were then excised from the infarct pigs (n
+ = 6) and six intact controls (n = 6) and fixed in formalin.
+ High-resolution DTI was employed to examine changes in
+ fractional anisotropy (FA), apparent diffusion coefficient
+ (ADC), and transmural helix angle distribution in the
+ infarct, adjacent and remote regions as compared to the
+ sham regions in the controls. FA values were found to
+ decrease in the infarct and differ between the adjacent and
+ remote regions. ADC increase in the infarct region was
+ substantial, while changes in the adjacent and remote
+ regions were insignificant. Structurally, the double-helix
+ myocardial structure shifted toward more left-handed around
+ the infarcted myocardium. Accordingly, the histological
+ analysis revealed clear fiber structural degradation in the
+ adjacent region. These findings confirmed the subtle
+ alterations in the myocardial fiber quality and structure
+ not only in the infarcted but also in the surrounding
+ noninfarcted myocardium or borderzone.},
+ DOI = {10.1002/mrm.21350},
+ Institution = {Laboratory of Biomedical Imaging and Signal Processing,
+ University of Hong Kong, Hong Kong. ewu@eee.hku.hk},
+ Keywords = {Animals; Anisotropy; Diffusion Magnetic Resonance Imaging;
+ Disease Models, Animal; Myocardial Infarction, pathology;
+ Swine; Swine, Miniature; Ventricular Remodeling,
+ physiology},
+ Language = {eng},
+ medline-pst = {ppublish},
+ owner = {stoeckc},
+ pmid = {17899595},
+ timestamp = {2015.07.28},
+ URL = {http://dx.doi.org/10.1002/mrm.21350}
+}
+
+@Article{ wu2009cci,
+ Title = {Sequential changes of myocardial microstructure in
+ patients postmyocardial infarction by diffusion-tensor
+ cardiac MR: correlation with left ventricular structure and
+ function.},
+ Author = {Wu, Ming-Ting and Su, Mao-Yuan M. and Huang, Yi-Luan and
+ Chiou, Kuan-Rau and Yang, Pinchen and Pan, Huay-Ben and
+ Reese, Timothy G. and Wedeen, Van J. and Tseng, Wen-Yih
+ I.},
+ Journal = {Circ Cardiovasc Imaging},
+ Year = {2009},
+ Month = {Jan},
+ Number = {1},
+ Pages = {32--40, 6 p following 40},
+ Volume = {2},
+ __markedentry = {[stoeckc:6]},
+ Abstract = {We used diffusion-tensor cardiac MR to investigate
+ myocardial microstructure changes, including tissue
+ integrity (mean diffusivity [MD], fractional anisotropy)
+ and fiber architecture (helix angles) in patients with
+ recent myocardial infarction (MI). This study aimed to
+ investigate the sequential changes of myocardial
+ microstructure and its relationships with changes of
+ macrostructure and function of the left ventricle
+ post-MI.Seventeen patients (age, 55.1+/-11.5 years; all
+ men) participated in the follow-up study. Diffusion-tensor
+ cardiac MR, cine gradient echo for left ventricle function,
+ and late gadolinium enhancement for viability were measured
+ from recent to chronic MI (median interval, 191 days). When
+ compared with the remote zone, the infarct-adjacent zone
+ showed overall increase of MD (2-way MANOVA, F(1,16)=36.3;
+ P<0.001), decrease of fractional anisotropy (F(1,16)=5.8;
+ P=0.029), and decrease of mean helix angles (F(1,16)=62.0;
+ P<0.001). From recent to chronic MI, there was overall
+ sequential decrease of MD (F(1,16)=22.6; P<0.001) and
+ increase of fractional anisotropy (F(1,16)=7.8; P=0.013).
+ Multiple linear regression showed that the improvement of
+ wall thickening in the infarct-adjacent zone correlated
+ with sequential decrease of MD in the infarct-adjacent zone
+ (r=-0.70; P=0.002) and increase of mean helix angles (ie,
+ more right-handed helical myofiber reorientation,
+ predominantly subendocardial location) in the remote zone
+ (r=0.60; P=0.011). Likewise, wall thickening in the remote
+ zone correlated with MD in the remote zone (r=-0.72;
+ P=0.001) and mean helix angles in the infarct-adjacent zone
+ (r=0.72; P=0.001).Diffusion-tensor cardiac MR suggests that
+ sequential zonal improvement of tissue integrity and fiber
+ architecture remodeling both associate with sequential
+ recovery of zonal wall thickening of the left ventricle
+ from recent to chronic MI.},
+ DOI = {10.1161/CIRCIMAGING.108.778902},
+ Institution = {Faculty of Medicine, School of Medicine, National Yang
+ Ming University, Taipei, Taiwan, Republic of China.
+ wu.mingting@gmail.com},
+ Keywords = {Aged; Diffusion Magnetic Resonance Imaging; Heart
+ Ventricles, pathology; Humans; Male; Middle Aged;
+ Myocardial Infarction, pathology/physiopathology;
+ Ventricular Function, Left; Ventricular Remodeling},
+ Language = {eng},
+ medline-pst = {ppublish},
+ owner = {stoeckc},
+ pii = {2/1/32},
+ pmid = {19808562},
+ timestamp = {2015.07.28},
+ URL = {http://dx.doi.org/10.1161/CIRCIMAGING.108.778902}
+}
+
+@Article{ wyman_current_1988,
+ Title = {Current Complications of Diagnostic and Therapeutic
+ Cardiac Catheterization},
+ Volume = {12},
+ Number = {6},
+ JournalTitle = {Journal of the American College of Cardiology},
+ Year = {1988},
+ Pages = {1400--1406},
+ Author = {Wyman, R. Michael and Safian, Robert D. and Portway,
+ Valerie and Skillman, John J. and McKAY, RAYMOND G. and
+ Baim, Donald S.}
+}
+
+@Article{ xi-etal-2012,
+ Title = "The estimation of patient-specific cardiac diastolic
+ functions from clinical measurements",
+ Journal = "Medical Image Analysis ",
+ Volume = "17",
+ Number = "2",
+ Pages = "133 - 146",
+ Year = "2013",
+ Note = "",
+ ISSN = "1361-8415",
+ DOI = "http://dx.doi.org/10.1016/j.media.2012.08.001",
+ URL = "http://www.sciencedirect.com/science/article/pii/S1361841512001004",
+ Author = "Xi, J. and Lamata, P. and Niederer, S. and Land, S. and
+ Shi, W. and Zhuang, X. and Ourselin, S. and Duckett, S. G.
+ and Shetty, A. K. and Rinaldi, C. A. and Rueckert, D. and
+ Razavi, R. and Smith, N. P.",
+ Keywords = "Diastolic heart failure"
+}
+
+@Article{ xi-moireau-chapelle-smith-11,
+ Author = {Xi, J. and Lamata, P. and Lee, J. and Moireau, P. and
+ Chapelle, D. and Smith, N.},
+ date-added = {2011-06-17 18:47:48 +0200},
+ date-modified = {2011-06-17 19:01:34 +0200},
+ Journal = {Journal of the Mechanical Behavior of Biomedical
+ Materials},
+ Title = {Myocardial transversely isotropic material parameter
+ estimation from in-silico measurements based on
+ reduced-order unscented Kalman filter},
+ Year = {2011}
+}
+
+###Article{ xi-moireau-chapelle-smith-11,
+ Author = {Xi, J. and Lamata, P. and Lee, J. and Moireau, P. and
+ Chapelle, D. and Smith, N.},
+ date-added = {2011-06-17 18:47:48 +0200},
+ date-modified = {2011-06-17 19:01:34 +0200},
+ Journal = {Journal of the Mechanical Behavior of Biomedical
+ Materials},
+ Title = {Myocardial transversely isotropic material parameter
+ estimation from in-silico measurements based on
+ reduced-order unscented Kalman filter},
+ Year = {2011}
+}
+
+@Article{ xie2013circ,
+ Title = {Pathological Ventricular Remodeling: Therapies: Part 2 of
+ 2},
+ Author = {Xie, Min and Burchfield, Jana S. and Hill, Joseph A.},
+ Journal = {Circulation},
+ Year = {2013},
+ Number = {9},
+ Pages = {1021-1030},
+ Volume = {128},
+ DOI = {10.1161/CIRCULATIONAHA.113.001879},
+ EPrint = {http://circ.ahajournals.org/content/128/9/1021.full.pdf+html},
+ File = {xie13.pdf:xie13.pdf:PDF},
+ timestamp = {2015/09/20},
+ URL = {http://circ.ahajournals.org/content/128/9/1021.short}
+}
+
+@Article{ xu2011ass,
+ Title = {Assessment of stiffness changes in the ex vivo porcine
+ aortic wall using magnetic resonance elastography.},
+ Author = {Xu, L. and Chen, J. and Yin, M. and Glaser, K.J. and Chen,
+ Q. and Woodrum, D.A. and Ehman, R.L.},
+ Journal = {Magnetic Resonance Imaging},
+ Year = {2012},
+ Volume = {30},
+ Pages = {122--127},
+ Abstract = {Magnetic resonance elastography (MRE) is a noninvasive
+ phase-contrast technique for estimating the mechanical
+ properties of tissues by imaging propagating mechanical
+ waves within the tissue. In this study, we hypothesize that
+ changes in arterial wall stiffness, experimentally induced
+ by formalin fixation, can be measured using MRE in ex vivo
+ porcine aortas. In agreement with our hypothesis, the
+ significant stiffness increase after sample fixation was
+ clearly demonstrated by MRE and confirmed by mechanical
+ testing. The results indicate that MRE can be used to
+ examine the stiffness changes of the aorta. This study has
+ provided evidence of the effectiveness of using MRE to
+ directly assess the stiffness change in aortic wall. The
+ results offer motivation to pursue MRE as a noninvasive
+ method for the evaluation of arterial wall mechanical
+ properties. }
+}
+
+###Article{ xu2011ass,
+ Title = {Assessment of stiffness changes in the ex vivo porcine
+ aortic wall using magnetic resonance elastography.},
+ Author = {Xu, L. and Chen, J. and Yin, M. and Glaser, K.J. and Chen,
+ Q. and Woodrum, D.A. and Ehman, R.L.},
+ Journal = {Magnetic Resonance Imaging},
+ Year = {2012},
+ Volume = {30},
+ Pages = {122--127},
+ Abstract = {Magnetic resonance elastography (MRE) is a noninvasive
+ phase-contrast technique for estimating the mechanical
+ properties of tissues by imaging propagating mechanical
+ waves within the tissue. In this study, we hypothesize that
+ changes in arterial wall stiffness, experimentally induced
+ by formalin fixation, can be measured using MRE in ex vivo
+ porcine aortas. In agreement with our hypothesis, the
+ significant stiffness increase after sample fixation was
+ clearly demonstrated by MRE and confirmed by mechanical
+ testing. The results indicate that MRE can be used to
+ examine the stiffness changes of the aorta. This study has
+ provided evidence of the effectiveness of using MRE to
+ directly assess the stiffness change in aortic wall. The
+ results offer motivation to pursue MRE as a noninvasive
+ method for the evaluation of arterial wall mechanical
+ properties. }
+}
+
+@Article{ yang_computation_1996,
+ Title = {Computation of Flow Pressure Fields from Magnetic
+ Resonance Velocity Mapping},
+ Volume = {36},
+ Number = {4},
+ JournalTitle = {Magnetic resonance in medicine},
+ Year = {1996},
+ Pages = {520--526},
+ Author = {Yang, Guang-Zhong and Kilner, Philip J. and Wood, Nigel B.
+ and Underwood, S. Richard and Firmin, David N.}
+}
+
+@Article{ zeinali-davarani2011cmbbe,
+ Title = {A finite element model of stress-mediated vascular
+ adaptation: application to abdominal aortic aneurysms},
+ Author = { Shahrokh Zeinali-Davarani and Azadeh Sheidaei and Seungik
+ Baek },
+ Journal = {Computer Methods in Biomechanics and Biomedical
+ Engineering},
+ Year = {2011},
+ Number = {9},
+ Pages = {803-817},
+ Volume = {14},
+ DOI = {10.1080/10255842.2010.495344},
+ EPrint = { http://dx.doi.org/10.1080/10255842.2010.495344
+
+ },
+ File = {zeinali-davarani11.pdf:zeinali-davarani11.pdf:PDF},
+ URL = { http://dx.doi.org/10.1080/10255842.2010.495344
+
+ }
+}
+
+@Article{ zeinali-davarani_raguin_vorp_baek_2010,
+ Title = {Identification of in vivo material and geometric
+ parameters of a human aorta: toward patient-specific
+ modeling of abdominal aortic aneurysm.},
+ Volume = {10},
+ Number = {5},
+ Journal = {Biomechanics and Modeling in Mechanobiology},
+ Author = {Zeinali-Davarani, S. and Raguin, L.G. and Vorp, D.A. and
+ Baek, S.},
+ Year = {2010},
+ Pages = {689--99}
+}
+
+###Article{ zeinali-davarani_raguin_vorp_baek_2010,
+ Title = {Identification of in vivo material and geometric
+ parameters of a human aorta: toward patient-specific
+ modeling of abdominal aortic aneurysm.},
+ Volume = {10},
+ URL = {http://www.ncbi.nlm.nih.gov/pubmed/21053043},
+ Number = {5},
+ Journal = {Biomechanics and Modeling in Mechanobiology},
+ Author = {Zeinali-Davarani, S. and Raguin, L.G. and Vorp, D.A. and
+ Baek, S.},
+ Year = {2010},
+ Pages = {689--99}
+}
+
+@InProceedings{ zhang-bathe-01,
+ Author = {Zhang, H. and Bathe, K.J. },
+ BookTitle = {Computational Fluid and Solid Mechanics},
+ code = {fsi15},
+ Editor = {K.J. Bathe},
+ Pages = {1440-1443},
+ Publisher = {Elsevier},
+ Title = {Direct and iterative computing of fluid flows fully
+ coupled with structures},
+ Year = {2001}
+}
+
+###InProceedings{ zhang-bathe-01,
+ Author = {Zhang, H. and Bathe, K.J. },
+ BookTitle = {Computational Fluid and Solid Mechanics},
+ code = {fsi15},
+ Editor = {K.J. Bathe},
+ Pages = {1440-1443},
+ Publisher = {Elsevier},
+ Title = {Direct and iterative computing of fluid flows fully
+ coupled with structures},
+ Year = {2001}
+}
+
+@Article{ zhang-kuang-00,
+ Author = {Zhang, J.B. and Kuang, Z.B.},
+ Journal = {Jour. of Biomechanics},
+ Pages = {355-360},
+ Title = {Study on blood constitutive parameters in different blood
+ constitutive equations},
+ Volume = {33},
+ Year = {2000}
+}
+
+###Article{ zhang-kuang-00,
+ Author = {Zhang, J.B. and Kuang, Z.B.},
+ Journal = {Jour. of Biomechanics},
+ Pages = {355-360},
+ Title = {Study on blood constitutive parameters in different blood
+ constitutive equations},
+ Volume = {33},
+ Year = {2000}
+}
+
+@Article{ zhang-zhang-eal-03,
+ Author = {Zhang, H. and Zhang, X. and Ji, S. and Guo, Y. and
+ Ledezma, G. and Elabbasi, N. and deCougny, H.},
+ Journal = {Comp. \& Struct.},
+ Number = {8--11},
+ Pages = {1071--1085},
+ Title = {Recent development of fluid-structure interaction
+ capabilities in the {ADINA} system},
+ Volume = {81},
+ Year = {2003}
+}
+
+###Article{ zhang-zhang-eal-03,
+ Author = {Zhang, H. and Zhang, X. and Ji, S. and Guo, Y. and
+ Ledezma, G. and Elabbasi, N. and deCougny, H.},
+ Journal = {Comp. \& Struct.},
+ Number = {8--11},
+ Pages = {1071--1085},
+ Title = {Recent development of fluid-structure interaction
+ capabilities in the {ADINA} system},
+ Volume = {81},
+ Year = {2003}
+}
+
+@Article{ zhang-zhao-01,
+ Author = {Zhang, B. and Zhao, Y.},
+ code = {por15},
+ Journal = {Int. J. Numer. Meth. Engng},
+ Pages = {2443-2457},
+ Title = {Simulations of flow through fluid/porous layers by a
+ characteristic-based method on unstructured grids},
+ Volume = {50},
+ Year = {2001}
+}
+
+###Article{ zhang-zhao-01,
+ Author = {Zhang, B. and Zhao, Y.},
+ code = {por15},
+ Journal = {Int. J. Numer. Meth. Engng},
+ Pages = {2443-2457},
+ Title = {Simulations of flow through fluid/porous layers by a
+ characteristic-based method on unstructured grids},
+ Volume = {50},
+ Year = {2001}
+}
+
+@Article{ zhang-zuazua-07,
+ Author = {Zhang, X. and Zuazua, E.},
+ date-added = {2012-02-27 13:53:27 +0000},
+ date-modified = {2012-02-27 13:53:55 +0000},
+ DOI = {10.1007/s00205-006-0020-x},
+ Journal = {Arch. Ration. Mech. Anal.},
+ Number = {1},
+ Pages = {49--120},
+ Title = {Long-time behavior of a coupled heat-wave system arising
+ in fluid-structure interaction},
+ Volume = {184},
+ Year = {2007}
+}
+
+###Article{ zhang-zuazua-07,
+ Author = {Zhang, X. and Zuazua, E.},
+ date-added = {2012-02-27 13:53:27 +0000},
+ date-modified = {2012-02-27 13:53:55 +0000},
+ DOI = {10.1007/s00205-006-0020-x},
+ Journal = {Arch. Ration. Mech. Anal.},
+ Number = {1},
+ Pages = {49--120},
+ Title = {Long-time behavior of a coupled heat-wave system arising
+ in fluid-structure interaction},
+ Volume = {184},
+ Year = {2007},
+ bdsk-url-1 = {http://dx.doi.org/10.1007/s00205-006-0020-x}
+}
+
+@Article{ zhu-quartapelle-loula-96,
+ Author = {Zhu, J. and Quartapelle, L. and Loula, A.F.D.},
+ Journal = {C. R. Acad. Sci. Paris, s{\'e}rie 1},
+ Pages = {971-976},
+ Title = {{Uncoupled variational formulation of a vector Poisson
+ problem}},
+ Volume = {323},
+ Year = {1996}
+}
+
+###Article{ zhu-quartapelle-loula-96,
+ Author = {Zhu, J. and Quartapelle, L. and Loula, A.F.D.},
+ Journal = {C. R. Acad. Sci. Paris, s{\'e}rie 1},
+ Pages = {971-976},
+ Title = {{Uncoupled variational formulation of a vector Poisson
+ problem}},
+ Volume = {323},
+ Year = {1996}
+}
+
+@Unpublished{ zhu2,
+ Author = {Zhu, J. and Loula, A.F.D. and Quartapelle, L.},
+ Title = {Finite element analysis of a nonstandard vector poisson
+ problem}
+}
+
+###Unpublished{ zhu2,
+ Author = {Zhu, J. and Loula, A.F.D. and Quartapelle, L.},
+ Note = {Preprint},
+ Title = {Finite element analysis of a nonstandard vector poisson
+ problem}
+}
+
+@Article{ zienkiewicz-smeler-peraire-90,
+ Author = {Zienkiewicz, O.C. and Smeler, J. and Peraire, J.},
+ Journal = {Comp. Meth. Appl. Mech. Engng.},
+ Pages = {105-121},
+ Title = {Compressible and incompressible flow ; an algorithm for
+ all seasons},
+ Volume = {78},
+ Year = {1990}
+}
+
+###Article{ zienkiewicz-smeler-peraire-90,
+ Author = {Zienkiewicz, O.C. and Smeler, J. and Peraire, J.},
+ Journal = {Comp. Meth. Appl. Mech. Engng.},
+ Pages = {105-121},
+ Title = {Compressible and incompressible flow ; an algorithm for
+ all seasons},
+ Volume = {78},
+ Year = {1990}
+}
+
+@Article{ zilberszac2017asymptomatic,
+ Title = {Asymptomatic severe aortic stenosis in the elderly},
+ Author = {Zilberszac, R. and Gabriel, H. and Schemper, M. and
+ Laufer, G. and Maurer, G. and Rosenhek, R.},
+ Journal = {JACC: Cardiovascular Imaging},
+ Volume = {10},
+ Number = {1},
+ Pages = {43--50},
+ Year = {2017},
+ Publisher = {Elsevier}
+}
diff --git a/conferences/cbme2022/cmbe21.cls b/conferences/cbme2022/cmbe21.cls
new file mode 100644
index 0000000..87c730b
--- /dev/null
+++ b/conferences/cbme2022/cmbe21.cls
@@ -0,0 +1,125 @@
+%% CMBE class 2-4 pages abstract (CMBE17 Pittsburgh)
+%% 01/11/2014 Etienne Boileau
+%% ** DO NOT MODIFY **
+%
+\NeedsTeXFormat{LaTeX2e}
+\DeclareOption{10pt}{\OptionNotUsed}
+\DeclareOption{12pt}{\OptionNotUsed}
+\DeclareOption{twocolumn}{\OptionNotUsed}
+\DeclareOption*{\PassOptionsToClass{\CurrentOption}{article}}
+\ProcessOptions\relax
+%
+\LoadClass[11pt]{article}
+%
+\RequirePackage[blocks]{authblk}
+\renewcommand\Authfont{\bfseries}
+\renewcommand\Affilfont{\normalfont\small}
+\setlength{\affilsep}{0.5ex}
+%
+\RequirePackage{geometry}
+\geometry{a4paper,total={155mm,262mm},top=17.5mm,left=27.5mm}
+%
+\RequirePackage{times,calc,indentfirst}
+%
+\renewcommand{\maketitle}{%
+\newpage
+\thispagestyle{empty}
+\begin{minipage}[t][28.4pt][t]{454.4pt}
+\begin{flushright}
+% HEADER %
+{%
+\footnotesize%
+7\textsuperscript{th} International Conference on Computational and Mathematical Biomedical Engineering - CMBE2021\\[2.84pt]%
+27--29 June 2022, Italy\\%
+P.~Nithiarasu and C.~Vergara (Eds.)%
+}%
+\end{flushright}
+\end{minipage}
+%
+\begin{center}
+\vspace{2ex}
+{%
+\fontsize{14}{18}\selectfont
+\bfseries
+\MakeUppercase{\@title}
+\par
+}%
+\vspace{2ex}
+{%
+\@author
+\par
+}%
+\end{center}
+\vspace{1ex}
+{%
+\noindent\textbf{\centering SUMMARY\\[2.84pt]\space}{\textrm\@summary}
+\par
+}%
+\vspace{2ex}
+\noindent\textbf{Key words:\space}{\it \@keywords}
+\par
+\vspace{4ex}
+}%
+%
+\newcommand{\keywords}[1]{\gdef\@keywords{#1}}
+\newcommand{\summary}[1]{\gdef\@summary{#1}}
+%
+\def\sectionLevel{1}
+\def\sectionIndent{0pt}
+\def\sectionSpaceBefore{12pt}
+\def\sectionSpaceAfter{6pt}
+\def\sectionStyle{\normalsize\bfseries\MakeUppercase}
+\def\subsectionStyle{\normalsize\bfseries}
+%
+\renewcommand{\section}{%
+ \@startsection{section}{\sectionLevel}{\sectionIndent}{\sectionSpaceBefore}%
+ {\sectionSpaceAfter}{\sectionStyle}}%
+%
+\renewcommand{\subsection}{%
+ \@startsection{subsection}{\sectionLevel}{\sectionIndent}{\sectionSpaceBefore}%
+ {\sectionSpaceAfter}{\subsectionStyle}}%
+%
+\renewcommand{\@makecaption}[2]{%
+ \vskip\abovecaptionskip
+ \sbox\@tempboxa{\normalsize\fontsize{10}{12}\selectfont {\bf #1}: #2}%
+ \ifdim \wd\@tempboxa >\hsize
+ \normalsize\fontsize{10}{12}\selectfont #1: #2\par
+ \else
+ \global \@minipagefalse
+ \hb@xt@\hsize{\hfil\box\@tempboxa\hfil}%
+ \fi
+ \vskip\belowcaptionskip}
+%
+\renewenvironment{thebibliography}[1]
+ {%
+ \begin{center}%
+ \section*{\MakeUppercase\refname\@mkboth{\MakeUppercase\refname}{\MakeUppercase\refname}}%
+ \end{center}%
+ \list{\@biblabel{\@arabic\c@enumiv}}%
+ {\settowidth\labelwidth{\@biblabel{#1}}%
+ \leftmargin\labelwidth
+ \advance\leftmargin\labelsep
+ \@openbib@code
+ \usecounter{enumiv}%
+ \let\p@enumiv\@empty
+ \renewcommand\theenumiv{\@arabic\c@enumiv}}%
+ \sloppy
+ \clubpenalty4000
+ \@clubpenalty \clubpenalty
+ \widowpenalty4000%
+ \sfcode`\.\@m}%
+ {\def\@noitemerr
+ {\@latex@warning{Empty `thebibliography' environment}}%
+ \endlist}
+%
+\setlength{\parindent}{0em}
+\setlength{\parskip}{5pt plus 2pt minus 1 pt}
+%
+\AtBeginDocument{%
+ \pagestyle{empty}
+ \maketitle
+ \let\maketitle\relax
+}
+%
+\endinput
+%
diff --git a/tex/.gitignore b/tex/.gitignore
deleted file mode 100644
index f09d893..0000000
--- a/tex/.gitignore
+++ /dev/null
@@ -1,23 +0,0 @@
-*.aux
-*.log
-*.pdf
-*.synctex.gz
-*.sh
-
-# Submission 1
-1_submission/*.synctex.gz
-1_submission/*.log
-1_submission/*.aux
-1_submission/*.pdf
-
-# Submission 2
-2_submission/*.synctex.gz
-2_submission/*.log
-2_submission/*.aux
-2_submission/*.pdf
-
-# HAL Submission
-hal_submission/*.synctex.gz
-hal_submission/*.log
-hal_submission/*.aux
-hal_submission/*.pdf
\ No newline at end of file