From 08a542b328967f5b86854c801d2b494150778eff Mon Sep 17 00:00:00 2001 From: reidmen Date: Fri, 8 Apr 2022 14:01:42 +0200 Subject: [PATCH] added conference abstract --- .gitignore | 19 +- conferences/cbme2022/CMBE21_ale.tex | 112 + conferences/cbme2022/biblio_merged.bib | 31051 +++++++++++++++++++++++ conferences/cbme2022/cmbe21.cls | 125 + tex/.gitignore | 23 - 5 files changed, 31305 insertions(+), 25 deletions(-) create mode 100644 conferences/cbme2022/CMBE21_ale.tex create mode 100644 conferences/cbme2022/biblio_merged.bib create mode 100644 conferences/cbme2022/cmbe21.cls delete mode 100644 tex/.gitignore diff --git a/.gitignore b/.gitignore index 5c2376f..f93c9a0 100644 --- a/.gitignore +++ b/.gitignore @@ -32,7 +32,10 @@ MANIFEST *.sh # TeX exceptions -!/tex/*.png +!/tex/**/*.png + +# published article exception +!article_published.pdf # Generated results from FEniCS/Python plots, etc... *.xdmf @@ -40,7 +43,7 @@ MANIFEST *.pyc # Jupyter checkpoints -#*.ipynb +*.ipynb .ipynb_checkpoints/ # Numerical results @@ -48,3 +51,15 @@ tests/ # Paraview state files *.pvsm + +*.aux +*.log +*.pdf +*.synctex.gz +*.sh + +# Submission 1 +**/*.synctex.gz +**/*.log +**/*.aux +**/*.pdf \ No newline at end of file diff --git a/conferences/cbme2022/CMBE21_ale.tex b/conferences/cbme2022/CMBE21_ale.tex new file mode 100644 index 0000000..dce26a1 --- /dev/null +++ b/conferences/cbme2022/CMBE21_ale.tex @@ -0,0 +1,112 @@ + +%% CMBE TEMPLATE FOR ABSTRACT SUBMISSION +%% USE CLASS cmbe17.cls ** DO NOT MODIFY CLASS FILE ** + +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% +% The extended abstract should consist of a short abstract (SUMMARY) +% and 2-4 keywords, followed by a short article. The length of the +% extended abstract must not be longer than four pages incl. references. +% +% Guidelines to complete each section are provided below. +% References are managed using thebibliography with cite_key and +% the \bibitem{cite_key} command. Make sure they are arranged by +% order of appearance in the text. ** No page numbering. +% +% +% Consult the conference website for submission information. +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% + +\documentclass{cmbe21} +% additional packages +\usepackage{amsmath,amsfonts,amssymb} +\usepackage{graphicx,wrapfig} +% comment if not needed +\usepackage[hyphens]{url} +\usepackage{hyperref} + + +% TITLE: replace text with your abstract title WITHOUT full stop +\title{On monolithic and Chorin-Temam schemes for incompressible flows in moving domains.} +% AUTHOR/AFFILIATION: handled by authblk. +% Use only one of the two following methods for author listing. Delete or comment out the other. +% Add/remove authors/affiliations as necessary, complete following the template without adding additional superscript/footnotes + +% 1- Authors have the same affiliation: +% ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +%\author{First A. Author} +%\author{Second B. Author} +%\author{Third C. Author} +%\affil{Affiliation, Postal Address, \texttt{\{First,Second,Third\}@affil}} + +% 2- Multiple authors with multiple affiliations. Complete as follows: author[i] <-> affiliation[i] +% ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +%\author[1]{Jerem\'ias Garay} +%\author[2]{Second B. Author} +%\author[3]{Third C. Author} +%\author[2]{Fourth D. Author} + + + +% \author[1]{Jerem\'ias Garay} +\author[1]{Reidmen Ar\'ostica} +% \author[1]{David Nolte} +\author[1]{Crist\'obal Bertoglio} + +\affil[1]{{Bernoulli Institute}, {University of Groningen}, +{Groningen}, The Netherlands} +%\affil[cmm]{{Center for Mathematical Modeling}, {Universidad de Chile}, {Santiago}, Chile} +%\affil[tub]{{Department of Fluid Dynamics}, {Technische Universit\"at Berlin}, {Berlin}, Germany} + +%\affil[2]{{Bernoulli Institute}, {University of Groningen}, +%{Groningen}, The Netherlands} + +%\affil[2]{{Biomedical Imaging Center}, {Pontificia Universidad Cat\'olica de Chile}, +%{Santiago}, Chile} + + +%\affil[3]{{School of Biomedical Engineering}, {Universidad de Valparaiso}, +%{Valparaiso}, Chile} +% +%\affil[4]{{Department of Mathematical Engineering}, {Universidad de Concepci\'on}, +%{Concepci\'on}, Chile} +% +% +%\affil[5]{{Department of Mechanical Engineering}, {Universidad T\'ecnica Federico Santa Mar\'ia}, +%{Santiago}, Chile} +% +%\affil[6]{{Joint last authors}, {in alphabetical order}} + + + + +%\affil[1]{Affiliation 1, Postal Address, \texttt{First@affil1}} +%\affil[2]{Affiliation 2, Postal Address, \texttt{\{Second,Fourth\}@affil2}} +%\affil[3]{Affiliation 3, Postal Address, \texttt{Third@affil3}} + + + + + +% SUMMARY: replace text with a short summary +\summary{Several time discretized domain for the incompressible Navier-Stokes equations (iNSE) in moving domains have been proposed in literature. Here, we introduce a unified formulation that combines different approaches found in literature, allowing a common well posedness and time stability analysis. It can be therefore shown that only a particular choice of numerical schemes ensure such properties under some restrictions. The analysis will be shown for Chorin-Temam schemes using the insight found in the monolithic case. Results are supported from numerical simulations and its usage in fluid-solid interaction problems will be presented.} + +% KEYWORDS: replace text with 2-4 keywords, not capitalised, separated by comma, and without a full stop at the end. +\keywords{numerical schemes, stability analysis, incompressible flows, fluid-structure interaction} + + +\begin{document} +Estimating parameters from heart contraction data, using e.g. magnetic resonance imaging \cite{imperiale2021tagged, markl20124d, marchesseau2013fast, marchesseau2013regionalvols}, requires several techniques such as the estimation algorithms, e.g. \cite{pfaller2020pod}, fluid-solid coupling schemes modeling the physics itself e.g. \cite{astorino-chouly-fernandez-09, bertoglio2013sisc} and in particular, the discretization of fluid problem arising from the blood movement e.g. \cite{bevan2016comparative}. + +In such a context, several works have been reported dealing with numerical solutions of the iNSE in moving domains within the Arbitrary Lagrangian Eulerian formulation (ALE). Different choices of time discretization have been reported , e.g. \cite{Basting2017}, \cite{Hessenthaler2017}. To the best of the authors knowledge, only a few monolithic schemes have been throughly analyzed, e.g. \cite{Lozovskiy2018, smaldone2014, le-tallec-mouro-01, Burtschell2017} while no analysis has been reported for Chorin-Temam (CT) methods, being an alternative option when requirements such a low time computations are needed, specially for future industrial applications. + +The goal of this talk is to present the finding of well-posedness and unconditional energy balance of the iNSE-ALE for several reported CT discretization schemes within a single formulation, published in \cite{arostica2021monolithic}. It will be supplemented with an usage case for fluid-solid interaction problems. + + +\bibliography{biblio_merged.bib} +\bibliographystyle{unsrt} + +\end{document} + + + + diff --git a/conferences/cbme2022/biblio_merged.bib b/conferences/cbme2022/biblio_merged.bib new file mode 100644 index 0000000..8d4e3e0 --- /dev/null +++ b/conferences/cbme2022/biblio_merged.bib @@ -0,0 +1,31051 @@ +@STRING{camwa = "Comput. Math. Appl." } +@STRING{camwa = "Comput. Math. Appl." } +@STRING{cma = "Comp. Meth. Appl. Mech. Engrg." } +@STRING{cma = "Comp. Meth. Appl. Mech. Engrg." } +@STRING{ijnme = "Int. J. Numer. Meth. Engrg." } +@STRING{ijnme = "Int. J. Numer. Meth. Engrg." } +@STRING{ijnmf = "Int. J. Numer. Meth. Fluids" } +@STRING{ijnmf = "Int. J. Numer. Meth. Fluids" } +@STRING{jcma = "J. Comp. Appl. Math." } +@STRING{jcma = "J. Comp. Appl. Math." } +@STRING{jcp = "J. Comp. Phys." } +@STRING{jcp = "J. Comp. Phys." } +@STRING{jsp = "J. Stat. Phys." } +@STRING{jsp = "J. Stat. Phys." } +@STRING{m2an = " Math. Model. Num. Anal. (M2AN)" } +@STRING{m2an = " Math. Model. Num. Anal. (M2AN)" } +@STRING{mc = " Math. Comp." } +@STRING{mc = " Math. Comp." } +@STRING{pre = "Phys. Rew. E" } +@STRING{pre = "Phys. Rew. E" } +@STRING{prl = "Phys. Rew. Lett." } +@STRING{prl = "Phys. Rew. Lett." } +@STRING{sisc = "SIAM J. Sci. Comp." } +@STRING{sisc = "SIAM J. Sci. 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St{\'e}phanie and Delingette, Herv{\'e} and Sermesant, Maxime and Cabrera-Lozoya, R and Tobon-Gomez, Catalina and Moireau, Philippe and i Ventura, RM Figueras and Lekadir, Karim and Hernandez, Alfredo and Garreau, Mireille and others}, + journal={Medical image analysis}, + volume={17}, + number={7}, + pages={816--829}, + year={2013}, + publisher={Elsevier} +} + +@article{chabiniok2012estimation, + title={Estimation of tissue contractility from cardiac cine-MRI using a biomechanical heart model}, + author={Chabiniok, Radomir and Moireau, Philippe and Lesault, P-F and Rahmouni, Alain and Deux, J-F and Chapelle, Dominique}, + journal={Biomechanics and modeling in mechanobiology}, + volume={11}, + number={5}, + pages={609--630}, + year={2012}, + publisher={Springer} +} + +@article{marchesseau2013fast, + title={Fast parameter calibration of a cardiac electromechanical model from medical images based on the unscented transform}, + author={Marchesseau, St{\'e}phanie and Delingette, Herv{\'e} 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Marsden, Alison and Pironneau, Olivier and E. Vignon-Clementel, Irene and A. Wall, Wolfgang}, + journal={International journal for numerical methods in biomedical engineering}, + volume={34}, + number={2}, + pages={e2918}, + year={2018}, + publisher={Wiley Online Library} +} + +@article{tiago_2014, + title={Patient-specific blood flow simulations: setting Dirichlet boundary conditions for minimal error with respect to measured data}, + author={Tiago, Jorge and Gambaruto, Alberto and Sequeira, Adelia}, + journal={Mathematical Modelling of Natural Phenomena}, + volume={9}, + number={6}, + pages={98--116}, + year={2014}, + publisher={EDP Sciences} +} + +@article{delia_variational_2010, + title={Methods for assimilating blood velocity measures in hemodynamics simulations: Preliminary results}, + author={D'Elia, Marta and Veneziani, Alessandro}, + journal={Procedia Computer Science}, + volume={1}, + number={1}, + pages={1231--1239}, + year={2010}, + publisher={Elsevier} +} + +@article{bruning2018uncertainty, + title={Uncertainty quantification for non-invasive assessment of pressure drop across a coarctation of the aorta using CFD}, + author={Br{\"u}ning, Jan and Hellmeier, Florian and Yevtushenko, Pavlo and K{\"u}hne, Titus and Goubergrits, Leonid}, + journal={Cardiovascular engineering and technology}, + volume={9}, + number={4}, + pages={582--596}, + year={2018}, + publisher={Springer} +} + + +@Unpublished{ 2004_fernandez_lecture_harvard_estimationtheory, + Author = {Fern\'andez, M. M.}, + Institution = {Laboratory of Mathematics in Imaging, Harvard University}, + HowPublished = {University Lecture}, + Year = {2004}, + Title = {Fundamentals on Estimation Theory}, + URL = {http://lmi.bwh.harvard.edu/papers/pdfs/2004/martin-fernandezCOURSE04b.pdf} +} + +@InCollection{ 2011_krueger-etal_fimh11_rbmatria, + Year = {2011}, + ISBN = {978-3-642-21027-3}, + BookTitle = {Functional Imaging and Modeling of the Heart}, + DOI = {10.1007/978-3-642-21028-0_28}, + Title = {Modeling Atrial Fiber Orientation in Patient-Specific + Geometries: A Semi-automatic Rule-Based Approach}, + URL = {http://dx.doi.org/10.1007/978-3-642-21028-0_28}, + Publisher = {Springer Berlin Heidelberg}, + Keywords = {patient-specific modeling; atrial modeling; fiber + orientation; atrial heterogeneity; atrial anisotropy}, + Author = {Kr\"uger, M. and Schmidt, V. and Tob\'on, C. and Weber, F. + and Lorenz, C. and Keller, D. and Barschdorf, H. and + Burdumy, M. and Neher, P. and Plank, G. and Rhode, K. and + Seemann, G. and Sanchez-Quintana, D. and Saiz, J. and + Razavi, R. and D\"ossel, O.}, + Pages = {223-232} +} + +@Article{ 2012_young_torsion_short, + Title = "Ventricular Torsion: An Aid to Ejection?", + Journal = "JACC: Cardiovascular Imaging", + Volume = "5", + Number = "3", + Pages = "282 - 284", + Year = "2012", + Note = "", + ISSN = "1936-878X", + DOI = "http://dx.doi.org/10.1016/j.jcmg.2011.11.016", + URL = "http://www.sciencedirect.com/science/article/pii/S1936878X11009363", + Author = "Young, Alistair A.", + Keywords = "transverse shear " +} + + +@phdthesis{failer2017optimal, + title={Optimal control of time-dependent nonlinear fluid-structure interaction}, + author={Failer, Lukas}, + year={2017}, + school={Technische Universit{\"a}t M{\"u}nchen} +} + +@Article{ abraham2002nejm, + Title = {Cardiac resynchronization in chronic heart failure}, + Author = {Abraham, W.T. and Fisher, W.G. and Smith, A.L. and + Delurgio, D.B. and Leon, A.R. and Loh, E. and Kocovic, D.Z. + and Packer, M. and Clavell, A.L. and Hayes, D.L. and + {others}}, + Journal = {New England Journal of Medicine}, + Year = {2002}, + Number = {24}, + Pages = {1845--1853}, + Volume = {346}, + File = {Abraham_2002.pdf:/home/hoermann/.zotero/zotero/krpbc0h6.default/zotero/storage/V9EPGE8S/Abraham_2002.pdf:application/pdf}, + Keywords = {CRT}, + URL = {http://www.nejm.org/doi/full/10.1056/nejmoa013168}, + URLDate = {2014-11-27} +} + +@Article{ abujudeh2010ajr, + Title = {Acute Adverse Reactions to Gadopentetate Dimeglumine and + Gadobenate Dimeglumine: Experience With 32,659 Injections}, + Author = {Abujudeh, Hani H. and Kosaraju, Vijaya K. and Kaewlai, + Rathachai}, + Journal = {American Journal of Roentgenology}, + Year = {2010}, + Month = {Feb}, + Number = {2}, + Pages = {430--434}, + Volume = {194}, + DOI = {10.2214/ajr.09.3099}, + File = {:Abujudeh2010AJR.pdf:PDF}, + ISSN = {1546-3141}, + Keywords = {acute adverse reaction, gadobenate dimeglumine, + gadolinium-based contrast agents, gadopentetate + dimeglumine}, + Publisher = {American Roentgen Ray Society}, + URL = {http://dx.doi.org/10.2214/AJR.09.3099} +} + +@Unpublished{ achdou-bernardi-coquel-01, + Author = {Achdou, Y. and Bernardi, C. and Coquel, F.}, + code = {por16}, + Title = {A priori and a posteriori analysis of finite volume + discretizations of {D}arcy's equations} +} + +###Unpublished{ achdou-bernardi-coquel-01, + Author = {Achdou, Y. and Bernardi, C. and Coquel, F.}, + code = {por16}, + Note = {Preprint Univ. Paris 6, 2001}, + Title = {A priori and a posteriori analysis of finite volume + discretizations of {D}arcy's equations} +} + +@Article{ achdou-pironneau-valentin-98, + Author = {Achdou, Y. and Pironneau, O. and Valentin, F.}, + Journal = {J. Comp. Phys.}, + Pages = {187-218}, + Title = {Effective boundary conditions for laminar flows over + periodic rough boundaries}, + Volume = {147}, + Year = {1998} +} + +###Article{ achdou-pironneau-valentin-98, + Author = {Achdou, Y. and Pironneau, O. and Valentin, F.}, + Journal = {J. Comp. Phys.}, + Pages = {187-218}, + Title = {Effective boundary conditions for laminar flows over + periodic rough boundaries}, + Volume = {147}, + Year = {1998} +} + +@Article{ adib_new_2017, + Title = {A New Concept of Data Assimilation Method between + {{PC}}-{{MRI}} Measurement and {{CFD}} Simulation of Blood + Flow Analysis on Patient-Specific Cerebral Aneurysm}, + Year = {2017}, + Author = {Adib, Mohd and Bin, Mohd Azrul Hisham} +} + +@Article{ aha-circulation-08, + Author = "Warnes, C.A. and Williams, R.G. and Bashore, T.M. and + Child, J.S. and Connolly, H.M. and Dearani, J.A. and del + Nido, P. and Fasules, J.W. and Graham, T.P. and Hijazi, + Z.M. and Hunt, S.A. and King, M.E. and Landzberg, M.J. and + Miner, P.D. and Radford, M.J. and Walsh, E.P. and Webb, + G.D.", + Title = "{ACC/AHA 2008 Guidelines for the Management of Adults with + Congenital Heart Disease: a report of the American College + of Cardiology/American Heart Association Task Force on + Practice Guidelines (writing committee to develop + guidelines on the management of adults with congenital + heart disease)}", + Journal = "Circulation", + Volume = 118, + Pages = "714-833", + Number = "1", + Year = "2008" +} + +###Article{ aha-circulation-08, + Author = "Warnes, C.A. and Williams, R.G. and Bashore, T.M. and + Child, J.S. and Connolly, H.M. and Dearani, J.A. and del + Nido, P. and Fasules, J.W. and Graham, T.P. and Hijazi, + Z.M. and Hunt, S.A. and King, M.E. and Landzberg, M.J. and + Miner, P.D. and Radford, M.J. and Walsh, E.P. and Webb, + G.D.", + Title = "{ACC/AHA 2008 Guidelines for the Management of Adults with + Congenital Heart Disease: a report of the American College + of Cardiology/American Heart Association Task Force on + Practice Guidelines (writing committee to develop + guidelines on the management of adults with congenital + heart disease)}", + Journal = "Circulation", + Volume = 118, + Pages = "714-833", + Number = "1", + Year = "2008" +} + +###Article{ aha-circulation-08, + Author = "Warnes, C.A. and Williams, R.G. and Bashore, T.M. and + Child, J.S. and Connolly, H.M. and Dearani, J.A. and del + Nido, P. and Fasules, J.W. and Graham, T.P. and Hijazi, + Z.M. and Hunt, S.A. and King, M.E. and Landzberg, M.J. and + Miner, P.D. and Radford, M.J. and Walsh, E.P. and Webb, + G.D.", + Title = "{ACC/AHA 2008 Guidelines for the Management of Adults with + Congenital Heart Disease: a report of the American College + of Cardiology/American Heart Association Task Force on + Practice Guidelines (writing committee to develop + guidelines on the management of adults with congenital + heart disease)}", + Journal = "Circulation", + Volume = 118, + Pages = "714-833", + Number = "1", + Year = "2008" +} + +@Book{ ainsworth2011posteriori, + Title = {A posteriori error estimation in finite element analysis}, + Author = {Ainsworth, Mark and Oden, J Tinsley}, + Volume = {37}, + Year = {2011}, + Publisher = {John Wiley \& Sons} +} + +@Article{ akaike1974ieee, + Title = {A new look at the statistical model identification}, + Author = {Akaike, Hirotugu}, + Journal = "IEEE Trans. Autom. Control", + Volume = {19}, + Number = {6}, + Pages = {716--723}, + Year = {1974}, + Publisher = {Ieee} +} + +@Article{ akrivis2010posteriori, + Title = {A posteriori error estimates for the two-step backward + differentiation formula method for parabolic equations}, + Author = {Akrivis, Georgios and Chatzipantelidis, Panagiotis}, + Journal = {SIAM Journal on Numerical Analysis}, + Volume = {48}, + Number = {1}, + Pages = {109--132}, + Year = {2010}, + Publisher = {SIAM} +} + +@Article{ aletras1999jmr, + Title = {DENSE: displacement encoding with stimulated echoes in + cardiac functional MRI.}, + Author = {Aletras, A. H. and Ding, S. and Balaban, R. S. and Wen, + H.}, + Journal = {J Magn Reson}, + Year = {1999}, + Month = {Mar}, + Number = {1}, + Pages = {247--252}, + Volume = {137}, + Abstract = {Displacement encoding with stimulated echoes (DENSE) was + developed for high-resolution myocardial displacement + mapping. Pixel phase is modulated by myocardial + displacement and data spatial resolution is limited only by + pixel size. 2D displacement vector maps were generated for + the systolic action in canines with 0.94 x 1.9 mm nominal + in-plane resolution and 2.3 mm/pi displacement encoding. A + radial strain of 0.208 was measured across the free left + ventricular wall over 105 ms during systole. DENSE + displacement maps require small first-order gradient + moments for encoding. DENSE magnitude images exhibit + black-blood contrast which allows for better myocardial + definition and reduced motion-related artifacts.}, + DOI = {10.1006/jmre.1998.1676}, + Institution = {Laboratory of Cardiac Energetics, NHLBI, Bethesda, + Maryland, 20892-1061, USA.}, + Keywords = {Animals; Artifacts; Computer Simulation; Dogs; Heart, + anatomy /&/ histology/physiology; Humans; Image Processing, + Computer-Assisted; Magnetic Resonance Imaging, methods; + Myocardial Contraction; Sensitivity and Specificity}, + Language = {eng}, + medline-pst = {ppublish}, + owner = {stoeckc}, + pii = {S1090-7807(98)91676-7}, + pmid = {10053155}, + timestamp = {2015.07.24}, + URL = {http://dx.doi.org/10.1006/jmre.1998.1676} +} + +@Article{ alexander2001, + Title = {Spatial transformations of diffusion tensor magnetic + resonance images}, + Author = {Alexander, Daniel C and Pierpaoli, Carlo and Basser, Peter + J and Gee, James C}, + Journal = {IEEE Transactions on Medical Imaging}, + Volume = {20}, + Number = {11}, + Pages = {1131--1139}, + Year = {2001}, + Publisher = {IEEE} +} + +@InCollection{ allain-85, + Author = {Allain, G.}, + BookTitle = {Res. notes in Math.}, + Journal = {Appl. Math. Optim.}, + Pages = {355-364}, + Publisher = {Pitman}, + Title = {Small-time existence for the {Navier-Stokes} equations + with a free surface and surface tension}, + Volume = {121}, + Year = {1985} +} + +###InCollection{ allain-85, + Author = {Allain, G.}, + BookTitle = {Res. notes in Math.}, + Journal = {Appl. Math. Optim.}, + Pages = {355-364}, + Publisher = {Pitman}, + Title = {Small-time existence for the {Navier-Stokes} equations + with a free surface and surface tension}, + Volume = {121}, + Year = {1985} +} + +@Article{ allain-87, + Author = {Allain, G.}, + Journal = {Appl. Math. Optim.}, + Pages = {37-50}, + Title = {Small-time existence for the {Navier-Stokes} equations + with a free surface}, + Volume = {16}, + Year = {1987} +} + +###Article{ allain-87, + Author = {Allain, G.}, + Journal = {Appl. Math. Optim.}, + Pages = {37-50}, + Title = {Small-time existence for the {Navier-Stokes} equations + with a free surface}, + Volume = {16}, + Year = {1987} +} + +@Article{ allaire-89, + Author = {Allaire, Gr{\'e}goire}, + fjournal = {Asymptotic Analysis}, + Journal = {Asymptotic Anal.}, + Number = {3}, + Pages = {203--222}, + Title = {Homogenization of the {S}tokes flow in a connected porous + medium}, + Volume = {2}, + Year = {1989} +} + +###Article{ allaire-89, + Author = {Allaire, Gr{\'e}goire}, + fjournal = {Asymptotic Analysis}, + Journal = {Asymptotic Anal.}, + Number = {3}, + Pages = {203--222}, + Title = {Homogenization of the {S}tokes flow in a connected porous + medium}, + Volume = {2}, + Year = {1989} +} + +@Article{ allaire-90, + Author = {Allaire, G.}, + fjournal = {Archive for Rational Mechanics and Analysis}, + Journal = {Arch. Rational Mech. Anal.}, + Number = {3}, + Pages = {209--259}, + Title = {Homogenization of the {N}avier-{S}tokes equations in open + sets perforated with tiny holes. {I}. {A}bstract framework, + a volume distribution of holes}, + Volume = {113}, + Year = {1990} +} + +###Article{ allaire-90, + Author = {Allaire, G.}, + fjournal = {Archive for Rational Mechanics and Analysis}, + Journal = {Arch. Rational Mech. Anal.}, + Number = {3}, + Pages = {209--259}, + Title = {Homogenization of the {N}avier-{S}tokes equations in open + sets perforated with tiny holes. {I}. {A}bstract framework, + a volume distribution of holes}, + Volume = {113}, + Year = {1990} +} + +@Article{ allaire-90b, + Author = {Allaire, G.}, + fjournal = {Archive for Rational Mechanics and Analysis}, + Journal = {Arch. Rational Mech. Anal.}, + Number = {3}, + Pages = {261--298}, + Title = {Homogenization of the {N}avier-{S}tokes equations in open + sets perforated with tiny holes. {II}. {N}oncritical sizes + of the holes for a volume distribution and a surface + distribution of holes}, + Volume = {113}, + Year = {1990} +} + +###Article{ allaire-90b, + Author = {Allaire, G.}, + fjournal = {Archive for Rational Mechanics and Analysis}, + Journal = {Arch. Rational Mech. Anal.}, + Number = {3}, + Pages = {261--298}, + Title = {Homogenization of the {N}avier-{S}tokes equations in open + sets perforated with tiny holes. {II}. {N}oncritical sizes + of the holes for a volume distribution and a surface + distribution of holes}, + Volume = {113}, + Year = {1990} +} + +@Article{ allaire-91, + Author = {Allaire, G.}, + fjournal = {Annali della Scuola Normale Superiore di Pisa. Classe di + Scienze. Serie IV}, + Journal = {Ann. Scuola Norm. Sup. Pisa Cl. Sci. (4)}, + Number = {4}, + Pages = {475--499}, + Title = {Continuity of the {D}arcy's law in the low-volume fraction + limit}, + Volume = {18}, + Year = {1991} +} + +###Article{ allaire-91, + Author = {Allaire, G.}, + fjournal = {Annali della Scuola Normale Superiore di Pisa. Classe di + Scienze. Serie IV}, + Journal = {Ann. Scuola Norm. Sup. Pisa Cl. Sci. (4)}, + Number = {4}, + Pages = {475--499}, + Title = {Continuity of the {D}arcy's law in the low-volume fraction + limit}, + Volume = {18}, + Year = {1991} +} + +@Article{ allaire-91a, + Author = {Allaire, G.}, + fjournal = {Communications on Pure and Applied Mathematics}, + Journal = {Comm. Pure Appl. Math.}, + Number = {6}, + Pages = {605--641}, + Title = {Homogenization of the {N}avier-{S}tokes equations with a + slip boundary condition}, + Volume = {44}, + Year = {1991} +} + +###Article{ allaire-91a, + Author = {Allaire, G.}, + fjournal = {Communications on Pure and Applied Mathematics}, + Journal = {Comm. Pure Appl. Math.}, + Number = {6}, + Pages = {605--641}, + Title = {Homogenization of the {N}avier-{S}tokes equations with a + slip boundary condition}, + Volume = {44}, + Year = {1991} +} + +@InCollection{ alle1, + Address = {New York}, + Author = {Allaire, G. and Mikeli{\'c}, A.}, + BookTitle = {Homogenization and porous media}, + Pages = {45--76, 259--275}, + Publisher = {Springer}, + Series = {Interdiscip. Appl. Math.}, + Title = {One-phase {N}ewtonian flow}, + Volume = {6}, + Year = {1997} +} + +###InCollection{ alle1, + Address = {New York}, + Author = {Allaire, G. and Mikeli{\'c}, A.}, + BookTitle = {Homogenization and porous media}, + Pages = {45--76, 259--275}, + Publisher = {Springer}, + Series = {Interdiscip. Appl. Math.}, + Title = {One-phase {N}ewtonian flow}, + Volume = {6}, + Year = {1997} +} + +@Book{ allen2013moss, + Title = {Moss \& Adams' Heart Disease in Infants, Children, and + Adolescents: Including the Fetus and Young Adult}, + Author = {Allen, Hugh D and Driscoll, David J and Shaddy, Robert E + and Feltes, Timothy F}, + Year = {2013}, + Publisher = {Lippincott Williams \& Wilkins} +} + +@Article{ alnaes_fenics_2015, + Title = {The {{FEniCS Project Version}} 1.5}, + Author = {Aln{\ae}s, Martin and Blechta, Jan and Hake, Johan and + Johansson, August and Kehlet, Benjamin and Logg, Anders and + Richardson, Chris and Ring, Johannes and Rognes, Marie E. + and Wells, Garth N.}, + Year = {2015}, + Volume = {3}, + ISSN = {2197-8263}, + DOI = {10.11588/ans.2015.100.20553}, + Abstract = {The FEniCS Project is a collaborative project for the + development of innovative concepts and tools for automated + scientific computing, with a particular focus on the + solution of differential equations by finite element + methods. The FEniCS Projects software consists of a + collection of interoperable software components, including + DOLFIN, FFC, FIAT, Instant, UFC, UFL, and mshr. This note + describes the new features and changes introduced in the + release of FEniCS version 1.5.}, + copyright = {Copyright (c) 2015 Archive of Numerical Software}, + Journal = {Archive of Numerical Software}, + Language = {en}, + Number = {100} +} + +###Article{ alnaes_fenics_2015, + langid = {english}, + Title = {The {{FEniCS Project Version}} 1.5}, + Volume = {3}, + ISSN = {2197-8263}, + URL = {http://journals.ub.uni-heidelberg.de/index.php/ans/article/view/20553}, + DOI = {10.11588/ans.2015.100.20553}, + Abstract = {The FEniCS Project is a collaborative project for the + development of innovative concepts and tools for automated + scientific computing, with a particular focus on the + solution of differential equations by finite element + methods. The FEniCS Projects software consists of a + collection of interoperable software components, including + DOLFIN, FFC, FIAT, Instant, UFC, UFL, and mshr. This note + describes the new features and changes introduced in the + release of FEniCS version 1.5.}, + Number = {100}, + JournalTitle = {Archive of Numerical Software}, + URLDate = {2016-01-29}, + Date = {2015}, + Author = {Alnæs, Martin and Blechta, Jan and Hake, Johan and + Johansson, August and Kehlet, Benjamin and Logg, Anders and + Richardson, Chris and Ring, Johannes and Rognes, Marie E. + and Wells, Garth N.} +} + +@Article{ alnaesblechta2015a, + Title = {The FEniCS Project Version 1.5}, + Author = {Martin S. Aln{\ae}s and Jan Blechta and Johan Hake and + August Johansson and Benjamin Kehlet and Anders Logg and + Chris Richardson and Johannes Ring and Marie E. Rognes and + Garth N. Wells}, + Year = {2015}, + Journal = {Archive of Numerical Software}, + Volume = {3}, + Number = {100}, + DOI = {10.11588/ans.2015.100.20553}, + page = {9-23} +} + +@Article{ ambrosi2011jmps, + Title = {Perspectives on biological growth and remodeling}, + Author = {Ambrosi, D and Ateshian, GA and Arruda, EM and Cowin, SC + and Dumais, J and Goriely, A and Holzapfel, Gerhard A and + Humphrey, JD and Kemkemer, R and Kuhl, E and others}, + Journal = {Journal of the Mechanics and Physics of Solids}, + Year = {2011}, + Number = {4}, + Pages = {863--883}, + Volume = {59}, + File = {:ambrosi11.pdf:PDF}, + Keywords = {growth, remodeling}, + Publisher = {Elsevier}, + timestamp = {2015/01/12} +} + +@Article{ amestoy_fully_2001, + Title = {A Fully Asynchronous Multifrontal Solver Using Distributed + Dynamic Scheduling}, + Author = {Amestoy, Patrick R. and Duff, Iain S. and L'Excellent, + Jean-Yves and Koster, Jacko}, + Year = {2001}, + Volume = {23}, + Pages = {15--41}, + Journal = {SIAM Journal on Matrix Analysis and Applications}, + Number = {1} +} + +@Book{ amher-meddict-07, + Title = {{The American Heritage Medical Dictionary}}, + Author = {}, + Year = {2007}, + Publisher = {Houghton Mifflin Company}, + Edition = {} +} + +###Book{ amher-meddict-07, + Title = {{The American Heritage Medical Dictionary}}, + Author = {}, + Year = {2007}, + Publisher = {Houghton Mifflin Company}, + Edition = {} +} + +@Book{ anderson-tannehill-pletcher-84, + Author = {Anderson, D.A. and Tannehill, J.C. and Pletcher, R.H.}, + Publisher = {Hemisphere, Mc Graw Hill}, + Title = {Computational fluid mechanics and heat transfer}, + Year = {1984} +} + +###Book{ anderson-tannehill-pletcher-84, + Author = {Anderson, D.A. and Tannehill, J.C. and Pletcher, R.H.}, + Publisher = {Hemisphere, Mc Graw Hill}, + Title = {Computational fluid mechanics and heat transfer}, + Year = {1984} +} + +@Article{ andersson-halden-glomsaker-00, + Author = {Andersson, H.I. and Halden, R. and Glomsaker, T.}, + Journal = {J. Biomechanics}, + Pages = {1257-1262}, + Title = {Effects of surface irregularities on flow resistance in + differently shaped arterial stenoses}, + Volume = {33}, + Year = {2000} +} + +###Article{ andersson-halden-glomsaker-00, + Author = {Andersson, H.I. and Halden, R. and Glomsaker, T.}, + Journal = {J. Biomechanics}, + Pages = {1257-1262}, + Title = {Effects of surface irregularities on flow resistance in + differently shaped arterial stenoses}, + Volume = {33}, + Year = {2000} +} + +@InProceedings{ angelini-gerard-06, + Author = {Angelini, E. and G\'erard, O.}, + BookTitle = {Proc. of the 28th IEEE EMBS Annual International + Conference}, + date-added = {2009-03-10 12:17:56 -0700}, + date-modified = {2009-03-10 12:18:08 -0700}, + Title = {Review of Myocardial Motion Estimation Methods from + Optical Flow Tracking on Ultrasound Data}, + Year = {2006} +} + +###InProceedings{ angelini-gerard-06, + Author = {Angelini, E. and G\'erard, O.}, + BookTitle = {Proc. of the 28th IEEE EMBS Annual International + Conference}, + date-added = {2009-03-10 12:17:56 -0700}, + date-modified = {2009-03-10 12:18:08 -0700}, + Title = {Review of Myocardial Motion Estimation Methods from + Optical Flow Tracking on Ultrasound Data}, + Year = {2006} +} + +@Article{ angot-99, + Author = {Angot, Ph.}, + code = {por10}, + Journal = {Math. Meth. Appl. Sci.}, + Pages = {1395-1412}, + Title = {Analysis of singular perturbations on the Brinkman problem + for fictitious domain models of viscous flows}, + Volume = {22}, + Year = {1999} +} + +###Article{ angot-99, + Author = {Angot, Ph.}, + code = {por10}, + Journal = {Math. Meth. Appl. Sci.}, + Pages = {1395-1412}, + Title = {Analysis of singular perturbations on the Brinkman problem + for fictitious domain models of viscous flows}, + Volume = {22}, + Year = {1999} +} + +@Article{ angot-bruneau-fabrie-99, + Author = {Angot, Ph. and Bruneau, C.H and Fabrie, P.}, + code = {por11}, + Journal = {Numer. Math.}, + Pages = {497--520}, + Title = {A penalization method to take into account obstales in + incompressible viscous flows}, + Volume = {81}, + Year = {1999} +} + +###Article{ angot-bruneau-fabrie-99, + Author = {Angot, Ph. and Bruneau, C.H and Fabrie, P.}, + code = {por11}, + Journal = {Numer. Math.}, + Pages = {497--520}, + Title = {A penalization method to take into account obstales in + incompressible viscous flows}, + Volume = {81}, + Year = {1999} +} + +@Article{ ansalone2003ajc, + Title = {Biventricular pacing in heart failure: back to basics in + the pathophysiology of left bundle branch block to reduce + the number of nonresponders}, + Author = {Ansalone, G. and Giannantoni, P. and Ricci, R. and + Trambaiolo, P. and Fedele, F. and Santini, M.}, + Journal = {The American Journal of Cardiology}, + Year = {2003}, + Month = may, + Number = {9}, + Pages = {55--61}, + Volume = {91}, + DOI = {10.1016/S0002-9149(02)03339-8}, + File = {Ansalone_2003.pdf:/home/hoermann/.zotero/zotero/krpbc0h6.default/zotero/storage/JI8G97E8/Ansalone_2003.pdf:application/pdf}, + ISSN = {00029149}, + Keywords = {CRT}, + Language = {en}, + ShortTitle = {Biventricular pacing in heart failure}, + URL = {http://linkinghub.elsevier.com/retrieve/pii/S0002914902033398}, + URLDate = {2014-11-27} +} + +@Article{ antiga2004robust, + Title = {Robust and objective decomposition and mapping of + bifurcating vessels}, + Author = {Antiga, Luca and Steinman, David A}, + Journal = {IEEE transactions on medical imaging}, + Volume = {23}, + Number = {6}, + Pages = {704--713}, + Year = {2004}, + Publisher = {IEEE} +} + +@Article{ antiga_image-based_2008, + Title = {An Image-Based Modeling Framework for Patient-Specific + Computational Hemodynamics}, + Volume = {46}, + Number = {11}, + JournalTitle = {Medical \& biological engineering \& computing}, + Year = {2008}, + Pages = {1097}, + Author = {Antiga, Luca and Piccinelli, Marina and Botti, Lorenzo and + Ene-Iordache, Bogdan and Remuzzi, Andrea and Steinman, + David A.} +} + +@Article{ antille-descloux-flueck-romerio-99, + Annote = {mhd, aluminium, stability}, + Author = {Antille, J.P. and Descloux, J. and Flueck, M. and Romerio, + M. V.}, + code = {mhd24}, + Journal = {Light Metal}, + Pages = {333-338}, + Title = {Eigenmodes and interface description in a {Hall-Heroult} + cell}, + Year = {1999} +} + +###Article{ antille-descloux-flueck-romerio-99, + Annote = {mhd, aluminium, stability}, + Author = {Antille, J.P. and Descloux, J. and Flueck, M. and Romerio, + M. V.}, + code = {mhd24}, + Journal = {Light Metal}, + Pages = {333-338}, + Title = {Eigenmodes and interface description in a {Hall-Heroult} + cell}, + Year = {1999} +} + +@Book{ antontsev-kazhikov-monakhov-93, + Author = {Antontsev, S.N. and Kazhikov, A.V. and Monakhov, V.N.}, + Publisher = {North-Holland}, + Title = {Boundary values problems in mechanics of nonhomogeneous + fluids}, + Year = {1993} +} + +###Book{ antontsev-kazhikov-monakhov-93, + Author = {Antontsev, S.N. and Kazhikov, A.V. and Monakhov, V.N.}, + Publisher = {North-Holland}, + Title = {Boundary values problems in mechanics of nonhomogeneous + fluids}, + Year = {1993} +} + +@Article{ arai2011jcpt, + Title = {Magnetic resonance imaging for area at risk, myocardial + infarction, and myocardial salvage.}, + Author = {Arai, Andrew E.}, + Journal = {J Cardiovasc Pharmacol Ther}, + Year = {2011}, + Number = {3-4}, + Pages = {313--320}, + Volume = {16}, + Abstract = {Almost all published preclinical studies of + cardioprotective agents include a measurement of area at + risk, infarct size, and thus allow determination of + myocardial salvage as an indicator of therapeutic benefit. + Until recently, single-photon emission tomography (SPECT) + imaging with injection of sestamibi prior to intervention + was the only clinical method suitable for making similar + assessments in patients. Over the past 5 years, a large + number of articles have documented that magnetic resonance + imaging (MRI) can noninvasively determine area at risk, + infarct size, and myocardial salvage. While T2-weighted + imaging has been the method used most commonly, precontrast + T1-weighted images and early gadolinium enhancement (EGE) + images can also determine the size of the area at risk. All + 3 of these MRI methods detect the area at risk based on + myocardial edema resulting from ischemia. Late gadolinium + enhancement (LGE) images provide a well-accepted reference + standard for infarct size in all of those methods. Finally, + LGE images can also provide a single modality measure of + myocardial salvage based on the "wave front" of myocardial + injury associated with the progressively more severe damage + associated with acute myocardial infarction (MI). + Essentially, the LGE images can provide an + endocardial-based snap shot of infarct size and salvaged + myocardium is estimated as the viable myocardium within the + circumferential extent of the infarct. Thus, the purpose of + this review is to provide an overview of how MRI can + determine the area at risk, infarct size, and thus measure + myocardial salvage.}, + DOI = {10.1177/1074248411412378}, + Institution = {Department of Health and Human Services, Cardiovascular + and Pulmonary Branch, National Heart, Lung and Blood + Institute, National Institutes of Health, Bethesda, MD + 20892, USA. araia@nih.gov}, + Keywords = {Contrast Media, diagnostic use; Gadolinium, diagnostic + use; Humans; Magnetic Resonance Imaging, methods; + Myocardial Infarction, + diagnosis/physiopathology/radionuclide imaging; + Organotechnetium Compounds, diagnostic use}, + Language = {eng}, + medline-pst = {ppublish}, + owner = {stoeckc}, + pii = {16/3-4/313}, + pmid = {21821534}, + timestamp = {2015.07.24}, + URL = {http://dx.doi.org/10.1177/1074248411412378} +} + +@Article{ armero-simo-96, + Annote = {mhd, numerical scheme}, + Author = {Armero, F. and Simo, J.C.}, + code = {mhd16}, + Journal = {Comp. Methods Appl. Mech. Engrg.}, + Pages = {41-90}, + Title = {Long-time dissipativity of time-stepping algorithms for an + abstract evolution equation with applications to the + incompressible {MHD} and {Navier-Stokes} equations}, + Volume = {131}, + Year = {1996} +} + +###Article{ armero-simo-96, + Annote = {mhd, numerical scheme}, + Author = {Armero, F. and Simo, J.C.}, + code = {mhd16}, + Journal = {Comp. Methods Appl. Mech. Engrg.}, + Pages = {41-90}, + Title = {Long-time dissipativity of time-stepping algorithms for an + abstract evolution equation with applications to the + incompressible {MHD} and {Navier-Stokes} equations}, + Volume = {131}, + Year = {1996} +} + +@Article{ armour1970, + Author = {Armour, J.A. and Randall, W.C.}, + Title = {Structural basis for cardiac function}, + Volume = {218}, + Number = {6}, + Pages = {1517-1523}, + Year = {1970}, + Journal = {American Journal of Physiology -- Legacy Content} +} + +@Article{ arzani_vivo_2012, + langid = {english}, + Title = {In {{Vivo Validation}} of {{Numerical Prediction}} for + {{Turbulence Intensity}} in an {{Aortic Coarctation}}}, + Volume = {40}, + ISSN = {0090-6964, 1573-9686}, + URL = {http://link.springer.com/10.1007/s10439-011-0447-6}, + DOI = {10.1007/s10439-011-0447-6}, + Number = {4}, + JournalTitle = {Annals of Biomedical Engineering}, + URLDate = {2019-02-06}, + Year = {2012-04}, + Pages = {860-870}, + Author = {Arzani, Amirhossein and Dyverfeldt, Petter and Ebbers, + Tino and Shadden, Shawn C.} +} + +@Article{ ashikaga2013hrythm, + Title = {Feasibility of image-based simulation to estimate ablation + target in human ventricular arrhythmia}, + Author = {Ashikaga, Hiroshi and Arevalo, Hermenegild and + Vadakkumpadan, Fijoy and Blake, Robert C and Bayer, Jason D + and Nazarian, Saman and Zviman, M Muz and Tandri, + Harikrishna and Berger, Ronald D and Calkins, Hugh and + others}, + Journal = {Heart Rhythm}, + Volume = {10}, + Number = {8}, + Pages = {1109--1116}, + Year = {2013}, + Publisher = {Elsevier} +} + +@Article{ assous-degond-heintze-raviart-segre-93, + Author = {Assous, F. and Degond, P. and Heintze, E. and Raviart, + P.A. and Segre J.}, + Journal = {Jour. Comp. Phys.}, + Pages = {222-237}, + Title = {On a finite-element method for solving the three + dimensional {Maxwell} equations}, + Volume = {109}, + Year = {1993} +} + +###Article{ assous-degond-heintze-raviart-segre-93, + Author = {Assous, F. and Degond, P. and Heintze, E. and Raviart, + P.A. and Segre J.}, + Journal = {Jour. Comp. Phys.}, + Pages = {222-237}, + Title = {On a finite-element method for solving the three + dimensional {Maxwell} equations}, + Volume = {109}, + Year = {1993} +} + +@PhdThesis{ astorino-10, + Author = {Astorino, M.}, + Title = {Fluid-Structure Interaction in the Cardiovascular System. + Numerical Analysis and Simulation}, + School = {Universit\'e Pierre et Marie Curie, Paris 6}, + Year = 2010 +} + +###PhdThesis{ astorino-10, + Author = {Astorino, M.}, + Title = {Fluid-Structure Interaction in the Cardiovascular System. + Numerical Analysis and Simulation}, + School = {Universit\'e Pierre et Marie Curie, Paris 6}, + Year = 2010 +} + +@Article{ astorino-chouly-fernandez-09, + Author = {Astorino, M. and Chouly, F. and Fern\'andez, M.A.}, + DOI = {10.1016/j.crma.2008.11.003}, + Journal = { C. R. Acad. Sci. Paris S\'er. I Math.}, + Number = {1--2}, + Pages = {99--104}, + Title = {An added-mass free semi-implicit coupling scheme for + fluid-structure interaction}, + Volume = {347}, + Year = {2009} +} + +###Article{ astorino-chouly-fernandez-09, + Author = {Astorino, M. and Chouly, F. and Fern\'andez, M.A.}, + DOI = {10.1016/j.crma.2008.11.003}, + Journal = { C. R. Acad. Sci. Paris S\'er. I Math.}, + Number = {1--2}, + Pages = {99--104}, + Title = {An added-mass free semi-implicit coupling scheme for + fluid-structure interaction}, + Volume = {347}, + Year = {2009}, + bdsk-url-1 = {http://dx.doi.org/10.1016/j.crma.2008.11.003} +} + +@Unpublished{ astorino-grandmont-xx, + Author = {Astorino, M. and Grandmont, C.}, + Note = {Submitted}, + Title = {Convergence analysis of a projection semi-implicit + coupling scheme for fluid-structure interaction problems} +} + +###Unpublished{ astorino-grandmont-xx, + Author = {Astorino, M. and Grandmont, C.}, + Note = {Submitted}, + Title = {Convergence analysis of a projection semi-implicit + coupling scheme for fluid-structure interaction problems} +} + +@Article{ astorino09_robinsemiimpl, + Author = "Astorino, M. and Chouly, F. and Fern\'{a}ndez, M.~A.", + collaboration = {}, + Title = {Robin Based Semi-Implicit Coupling in Fluid-Structure + Interaction: Stability Analysis and Numerics}, + Publisher = {SIAM}, + Year = {2009}, + Journal = sisc, + Volume = {31}, + Number = {6}, + Pages = {4041-4065}, + DOI = {10.1137/090749694} +} + +###Article{ astorino09_robinsemiimpl, + Author = "Astorino, M. and Chouly, F. and Fern\'{a}ndez, M.~A.", + collaboration = {}, + Title = {Robin Based Semi-Implicit Coupling in Fluid-Structure + Interaction: Stability Analysis and Numerics}, + Publisher = {SIAM}, + Year = {2009}, + Journal = sisc, + Volume = {31}, + Number = {6}, + Pages = {4041-4065}, + DOI = {10.1137/090749694} +} + +@Article{ astorino2009fsivalves, + Title = {Fluid--structure interaction and multi-body contact: + application to aortic valves}, + Author = {Astorino, Matteo and Gerbeau, Jean-Fr{\'e}d{\'e}ric and + Pantz, Olivier and Traore, Karim-Fr{\'e}d{\'e}ric}, + Journal = {Computer Methods in Applied Mechanics and Engineering}, + Volume = {198}, + Number = {45-46}, + Pages = {3603--3612}, + Year = {2009}, + Publisher = {Elsevier} +} + +@Article{ astorino2012ris, + Title = {A robust and efficient valve model based on resistive + immersed surfaces}, + Author = {Astorino, M. and Hamers, J. and Shadden, S. and Gerbeau, + J.}, + Journal = {International Journal for Numerical Methods in Biomedical + Engineering}, + Volume = {28}, + Number = {9}, + Pages = {937--959}, + Year = {2012}, + Publisher = {Wiley Online Library} +} + +@Article{ astorino_robin_2010, + langid = {english}, + Title = {Robin {{Based Semi}}-{{Implicit Coupling}} in + {{Fluid}}-{{Structure Interaction}}: {{Stability Analysis}} + and {{Numerics}}}, + Volume = {31}, + ISSN = {1064-8275, 1095-7197}, + URL = {http://epubs.siam.org/doi/10.1137/090749694}, + DOI = {10.1137/090749694}, + ShortTitle = {Robin {{Based Semi}}-{{Implicit Coupling}} in + {{Fluid}}-{{Structure Interaction}}}, + Abstract = {In this paper, we propose a semi-implicit coupling scheme + for the numerical simulation of fluid-structure + interaction systems involving a viscous incompressible + fluid. The scheme is stable irrespective of the so-called + added-mass effect and allows for conservative + time-stepping within the structure. The efficiency of the + scheme is based on the explicit splitting of the viscous + effects and geometrical/convective nonlinearities through + the use of the Chorin–Temam projection scheme within the + fluid. Stability comes from the implicit pressure-solid + coupling and a specific Robin treatment of the explicit + viscous-solid coupling, derived from Nitsche’s method.}, + Number = {6}, + JournalTitle = {SIAM Journal on Scientific Computing}, + URLDate = {2018-09-19}, + Date = {2010-01}, + Pages = {4041-4065}, + Author = {Astorino, Matteo and Chouly, Franz and Fernández, Miguel + A.} +} + +@Article{ astrand-etal-11, + Author = {Astrand, H. and Stalhand, J. and Karlsson, J. and + Karlsson, M. and Sonesson, B. and L\"anne, T.}, + Title = {In vivo estimation of the contribution of elastin and + collagen to the mechanical properties in the human + abdominal aorta: effect of age and sex}, + Volume = {110}, + Number = {1}, + Pages = {176-187}, + Year = {2011}, + DOI = {10.1152/japplphysiol.00579.2010}, + Abstract = {The mechanical properties of the aorta affect cardiac + function and are related to cardiovascular + morbidity/mortality. This study was designed to evaluate + the isotropic (mainly elastin, elastiniso) and anisotropic + (mainly collagen, collagenani) material parameters within + the human aorta in vivo. Thirty healthy men and women in + three different age categories (23–30, 41–54, and + 67–72 yr) were included. A novel mechanical model was + used to identify the mechanical properties and the strain + field with aid of simultaneously recorded pressure and + radius in the abdominal aorta. The magnitudes of the + material parameters relating to both the stiffness of + elastiniso and collagenani were in agreement with earlier + in vitro studies. The load-bearing fraction attributed to + collagenani oscillated from 10 to 30\% between diastolic + and systolic pressures during the cardiac cycle. With age, + stiffness of elastiniso increased in men, despite the + decrease in elastin content that has been found due to + elastolysis. Furthermore, an increase in stiffness of + collagenani at high physiological pressure was found. This + might be due to increased glycation, as well as changed + isoforms of collagen in the aortic wall with age. A marked + sex difference was observed, with a much less age-related + effect, both on elastiniso and collagenani stiffness in + women. Possible factors of importance could be the effect + of sex hormones, as well as differing collagen isoforms, + between the sexes.}, + Journal = {Journal of Applied Physiology} +} + +###Article{ astrand-etal-11, + Author = {Astrand, H. and Stalhand, J. and Karlsson, J. and + Karlsson, M. and Sonesson, B. and L\"anne, T.}, + Title = {In vivo estimation of the contribution of elastin and + collagen to the mechanical properties in the human + abdominal aorta: effect of age and sex}, + Volume = {110}, + Number = {1}, + Pages = {176-187}, + Year = {2011}, + DOI = {10.1152/japplphysiol.00579.2010}, + Abstract = {The mechanical properties of the aorta affect cardiac + function and are related to cardiovascular + morbidity/mortality. This study was designed to evaluate + the isotropic (mainly elastin, elastiniso) and anisotropic + (mainly collagen, collagenani) material parameters within + the human aorta in vivo. Thirty healthy men and women in + three different age categories (23–30, 41–54, and + 67–72 yr) were included. A novel mechanical model was + used to identify the mechanical properties and the strain + field with aid of simultaneously recorded pressure and + radius in the abdominal aorta. The magnitudes of the + material parameters relating to both the stiffness of + elastiniso and collagenani were in agreement with earlier + in vitro studies. The load-bearing fraction attributed to + collagenani oscillated from 10 to 30\% between diastolic + and systolic pressures during the cardiac cycle. With age, + stiffness of elastiniso increased in men, despite the + decrease in elastin content that has been found due to + elastolysis. Furthermore, an increase in stiffness of + collagenani at high physiological pressure was found. This + might be due to increased glycation, as well as changed + isoforms of collagen in the aortic wall with age. A marked + sex difference was observed, with a much less age-related + effect, both on elastiniso and collagenani stiffness in + women. Possible factors of importance could be the effect + of sex hormones, as well as differing collagen isoforms, + between the sexes.}, + URL = {http://jap.physiology.org/content/110/1/176.abstract}, + EPrint = {http://jap.physiology.org/content/110/1/176.full.pdf+html}, + Journal = {Journal of Applied Physiology} +} + +@TechReport{ audusse-bristeau-perthame-00, + Author = {Audusse, E. and Bristeau, M. O. and Perthame, B.}, + Institution = {INRIA}, + Note = {http://www.inria.fr/RRRT/RR-3989.html}, + Number = {3989}, + Title = {Kinetic schemes for solving {S}aint-{V}enant equations + with source terms}, + Type = {Rapport de Recherche}, + Year = {2000} +} + +###TechReport{ audusse-bristeau-perthame-00, + Author = {Audusse, E. and Bristeau, M. O. and Perthame, B.}, + Institution = {INRIA}, + Note = {http://www.inria.fr/RRRT/RR-3989.html}, + Number = {3989}, + Title = {Kinetic schemes for solving {S}aint-{V}enant equations + with source terms}, + Type = {Rapport de Recherche}, + Year = {2000} +} + +@Article{ augustin2011assessment, + Title = {An assessment of discretizations for convection-dominated + convection--diffusion equations}, + Author = {Augustin, Matthias and Caiazzo, Alfonso and Fiebach, + Andr{\'e} and Fuhrmann, J{\"u}rgen and John, Volker and + Linke, Alexander and Umla, Rudolf}, + Journal = {Computer Methods in Applied Mechanics and Engineering}, + Volume = {200}, + Number = {47}, + Pages = {3395--3409}, + Year = {2011}, + Publisher = {Elsevier} +} + +@Article{ auroux-blum-08, + Author = {Auroux, D. and Blum, J.}, + date-added = {2009-03-10 12:06:21 -0700}, + date-modified = {2009-03-10 12:07:39 -0700}, + Journal = {Nonlinear Processes Geophysics}, + Pages = {305-319}, + Title = {A nudging-based data assimilation method: the Back and + Forth Nudging (BFN) algorithm}, + Volume = {15}, + Year = {2008} +} + +###Article{ auroux-blum-08, + Author = {Auroux, D. and Blum, J.}, + date-added = {2009-03-10 12:06:21 -0700}, + date-modified = {2009-03-10 12:07:39 -0700}, + Journal = {Nonlinear Processes Geophysics}, + Pages = {305-319}, + Title = {A nudging-based data assimilation method: the Back and + Forth Nudging (BFN) algorithm}, + Volume = {15}, + Year = {2008} +} + +@Article{ auroux-blum-08-npg, + Author = {Auroux, D. and Blum, J.}, + Title = {A nudging-based data assimilation method for oceanographic + problems: the Back and Forth Nudging (BFN) algorithm}, + Journal = {Nonlin. Proc. Geophys.}, + Volume = {15}, + Year = {2008}, + Pages = {305--319} +} + +###Article{ auroux-blum-08-npg, + Author = {Auroux, D. and Blum, J.}, + Title = {A nudging-based data assimilation method for oceanographic + problems: the Back and Forth Nudging (BFN) algorithm}, + Journal = {Nonlin. Proc. Geophys.}, + Volume = {15}, + Year = {2008}, + Pages = {305--319} +} + +@Article{ avril2010ani, + Title = {Anisotropic and hyperelastic identification of in vitro + human arteries from full-field optical measurements.}, + Author = {Avril, S. and Badel, P. and Duprey, A.}, + Journal = {J Biomech}, + Volume = {43}, + Number = {15}, + Pages = {2978-85}, + Year = {2010}, + Abstract = {In this paper, we present a new approach for the bi-axial + characterization of in vitro human arteries and we prove + its feasibility on an example. The specificity of the + approach is that it can handle heterogeneous strain and + stress distributions in arterial segments. From the + full-field experimental data obtained in + inflation/extension tests, an inverse approach, called the + virtual fields method (VFM), is used for deriving the + material parameters of the tested arterial segment. The + obtained results are promising and the approach can + effectively provide relevant values for the anisotropic + hyperelastic properties of the tested sample. } +} + +###Article{ avril2010ani, + Title = {Anisotropic and hyperelastic identification of in vitro + human arteries from full-field optical measurements.}, + Author = {Avril, S. and Badel, P. and Duprey, A.}, + Journal = {J Biomech}, + Volume = {43}, + Number = {15}, + Pages = {2978-85}, + Year = {2010}, + Abstract = {In this paper, we present a new approach for the bi-axial + characterization of in vitro human arteries and we prove + its feasibility on an example. The specificity of the + approach is that it can handle heterogeneous strain and + stress distributions in arterial segments. From the + full-field experimental data obtained in + inflation/extension tests, an inverse approach, called the + virtual fields method (VFM), is used for deriving the + material parameters of the tested arterial segment. The + obtained results are promising and the approach can + effectively provide relevant values for the anisotropic + hyperelastic properties of the tested sample. } +} + +@Article{ avril2015regional, + Title = {Regional identification of mechanical properties in + arteries}, + Author = {Avril, St{\'e}phane and Bersi, Matthew R and Bellini, + Chiara and Genovese, Katia and Humphrey, Jay D}, + Journal = {Computer methods in biomechanics and biomedical + engineering}, + Volume = {18}, + Number = {sup1}, + Pages = {1874--1875}, + Year = {2015}, + Publisher = {Taylor \& Francis} +} + +@Article{ axel1989r, + Title = {MR imaging of motion with spatial modulation of + magnetization.}, + Author = {Axel, L. and Dougherty, L.}, + Journal = {Radiology}, + Year = {1989}, + Month = {Jun}, + Number = {3}, + Pages = {841--845}, + Volume = {171}, + Abstract = {A novel magnetic resonance imaging technique provides + direct imaging of motion by spatially modulating the degree + of magnetization prior to imaging. The preimaging pulse + sequence consists of a radio-frequency (RF) pulse to + produce transverse magnetization, a magnetic field gradient + to "wrap" the phase along the direction of the gradient, + and a second RF pulse to mix the modulated transverse + magnetization with the longitudinal magnetization. The + resulting images show periodic stripes due to the + modulation. Motion between the time of striping and image + formation is directly demonstrated as a corresponding + displacement of the stripes. This technique can be used to + study heart wall motion, to distinguish slowly moving blood + from thrombus, and to study the flow of blood and + cerebrospinal fluid.}, + DOI = {10.1148/radiology.171.3.2717762}, + Institution = {Department of Radiology, Hospital of the University of + Pennsylvania, Philadelphia 19104.}, + Keywords = {Adult; Blood Flow Velocity; Female; Heart Diseases, + diagnosis/etiology; Humans; Magnetic Resonance Imaging, + methods; Magnetics; Middle Aged; Mitral Valve Stenosis, + complications/physiopathology; Models, Structural; Motion; + Myocardial Contraction; Spinal Cord Neoplasms, + cerebrospinal fluid; Thrombosis, diagnosis/etiology}, + Language = {eng}, + medline-pst = {ppublish}, + owner = {stoeckc}, + pmid = {2717762}, + timestamp = {2015.07.24}, + URL = {http://dx.doi.org/10.1148/radiology.171.3.2717762} +} + +@Article{ baaijens-01, + Author = {Baaijens, F.}, + Journal = {Int. Jour. Num. Meth. Fluids}, + Pages = {743-761}, + Title = {A fictitious domain/mortar element method for + fluid-structure interaction}, + Volume = {35}, + Year = {2001} +} + +###Article{ baaijens-01, + Author = {Baaijens, F.}, + Journal = {Int. Jour. Num. Meth. Fluids}, + Pages = {743-761}, + Title = {A fictitious domain/mortar element method for + fluid-structure interaction}, + Volume = {35}, + Year = {2001} +} + +@Article{ badel2011mec, + Title = {Mechanical identification of layer-specific properties of + mouse carotid arteries using 3D-DIC and a hyperelastic + anisotropic constitutive model.}, + Author = {Badel, P. and Avril, S. and Lessner, S. and Sutton, M.}, + Journal = {Computer Methods in Biomechanics and Biomedical + Engineering}, + Pages = {37-48}, + Volume = {15}, + Number = {1}, + Year = {2012}, + Abstract = {The role of mechanics is known to be of primary order in + many arterial diseases; however, determining mechanical + properties of arteries remains a challenge. This paper + discusses the identifiability of the passive mechanical + properties of a mouse carotid artery, taking into account + the orientation of collagen fibres in the medial and + adventitial layers. On the basis of 3D digital image + correlation measurements of the surface strain during an + inflation/extension test, an inverse identification method + is set up. It involves a 3D finite element mechanical model + of the mechanical test and an optimisation algorithm. A + two-layer constitutive model derived from the Holzapfel + model is used, with five and then seven parameters. The + five-parameter model is successfully identified providing + layer-specific fibre angles. The seven-parameter model is + over parameterised, yet it is shown that additional data + from a simple tension test make the identification of + refined layer-specific data reliable. } +} + +###Article{ badel2011mec, + Title = {Mechanical identification of layer-specific properties of + mouse carotid arteries using 3D-DIC and a hyperelastic + anisotropic constitutive model.}, + Author = {Badel, P. and Avril, S. and Lessner, S. and Sutton, M.}, + Journal = {Computer Methods in Biomechanics and Biomedical + Engineering}, + Pages = {37-48}, + Volume = {15}, + Number = {1}, + Year = {2012}, + Abstract = {The role of mechanics is known to be of primary order in + many arterial diseases; however, determining mechanical + properties of arteries remains a challenge. This paper + discusses the identifiability of the passive mechanical + properties of a mouse carotid artery, taking into account + the orientation of collagen fibres in the medial and + adventitial layers. On the basis of 3D digital image + correlation measurements of the surface strain during an + inflation/extension test, an inverse identification method + is set up. It involves a 3D finite element mechanical model + of the mechanical test and an optimisation algorithm. A + two-layer constitutive model derived from the Holzapfel + model is used, with five and then seven parameters. The + five-parameter model is successfully identified providing + layer-specific fibre angles. The seven-parameter model is + over parameterised, yet it is shown that additional data + from a simple tension test make the identification of + refined layer-specific data reliable. } +} + +@Article{ badia-codina-07, + Author = {Badia, S. and Codina, R.}, + Journal = {Numer. Math.}, + Pages = {533-557}, + Title = {{Convergence analysis of the FEM approximation of the + first order projection method for incompressible flows with + and without the inf-sup condition}}, + Volume = {107}, + Year = {2007} +} + +###Article{ badia-codina-07, + Author = {Badia, S. and Codina, R.}, + Journal = {Numer. Math.}, + Pages = {533-557}, + Title = {{Convergence analysis of the FEM approximation of the + first order projection method for incompressible flows with + and without the inf-sup condition}}, + Volume = {107}, + Year = {2007} +} + +@Article{ badia-nobile-vergara-08, + Author = {Badia, S. and Nobile, F. and Vergara, C.}, + Journal = {J. Comp. Phys.}, + Pages = {7027--7051}, + Title = {Fluid-structure partitioned procedures based on {R}obin + transmission conditions}, + Volume = {227}, + Year = {2008} +} + +###Article{ badia-nobile-vergara-08, + Author = {Badia, S. and Nobile, F. and Vergara, C.}, + Journal = {J. Comp. Phys.}, + Pages = {7027--7051}, + Title = {Fluid-structure partitioned procedures based on {R}obin + transmission conditions}, + Volume = {227}, + Year = {2008} +} + +@Article{ badia-quaini-quarteroni-08, + Author = {Badia, S. and Quaini, A. and Quarteroni, A.}, + Journal = {SIAM J. Sci. Comput.}, + Number = {4}, + Pages = {1778--1805}, + Title = {Splitting methods based on algebraic factorization for + fluid-structure interaction}, + Volume = {30}, + Year = {2008} +} + +###Article{ badia-quaini-quarteroni-08, + Author = {Badia, S. and Quaini, A. and Quarteroni, A.}, + Journal = {SIAM J. Sci. Comput.}, + Number = {4}, + Pages = {1778--1805}, + Title = {Splitting methods based on algebraic factorization for + fluid-structure interaction}, + Volume = {30}, + Year = {2008} +} + +@Article{ badiacodina07, + Author = "Badia, S. and Codina, R.", + Title = "{Convergence analysis of the FEM approximation of the + first order projection method for incompressible flows with + and without the inf-sup condition}", + Journal = "{Num. Math.}", + Volume = "107", + Pages = "533--557", + Year = "2007" +} + +###Article{ badiacodina07, + Author = "Badia, S. and Codina, R.", + Title = "{Convergence analysis of the FEM approximation of the + first order projection method for incompressible flows with + and without the inf-sup condition}", + Journal = "{Num. Math.}", + Volume = "107", + Pages = "533--557", + Year = "2007" +} + +@Article{ baek2005jelast, + Title = {Competition between radial expansion and thickening in the + enlargement of an intracranial saccular aneurysm}, + Author = {Baek, S and Rajagopal, KR and Humphrey, JD}, + Journal = {Journal of Elasticity}, + Year = {2005}, + Number = {1-3}, + Pages = {13--31}, + Volume = {80}, + File = {baek05.pdf:baek05.pdf:PDF}, + Publisher = {Springer}, + timestamp = {2015/03/27} +} + +@Article{ baer-cairncross-schunk-sackinger-rao-00, + Author = {Baer, T.A. and Cairncross, R.A. and Schunk, P.R. and + Sackinger, P.A. and Rao, R.R.}, + code = {mob6}, + Journal = {Int. Jour. Num. Meth. Fluids}, + Pages = {405-427}, + Title = {A finite element method for free surface flows of + incompressible fluids in three dimensions. {Part II}: + dynamic wetting line}, + Volume = {33}, + Year = {2000} +} + +###Article{ baer-cairncross-schunk-sackinger-rao-00, + Author = {Baer, T.A. and Cairncross, R.A. and Schunk, P.R. and + Sackinger, P.A. and Rao, R.R.}, + code = {mob6}, + Journal = {Int. Jour. Num. Meth. Fluids}, + Pages = {405-427}, + Title = {A finite element method for free surface flows of + incompressible fluids in three dimensions. {Part II}: + dynamic wetting line}, + Volume = {33}, + Year = {2000} +} + +@Article{ baiocchi-brezzi-franca-93, + Author = {Baiocchi, C. and Brezzi, F. and Franca, L.P.}, + Journal = {Comp. Meth. Appl. Mech. Eng.}, + Pages = {125-141}, + Title = {Virtual bubbles and {Galerkin}-least-squares type + methods}, + Volume = {105}, + Year = {1993} +} + +###Article{ baiocchi-brezzi-franca-93, + Author = {Baiocchi, C. and Brezzi, F. and Franca, L.P.}, + Journal = {Comp. Meth. Appl. Mech. Eng.}, + Pages = {125-141}, + Title = {Virtual bubbles and {Galerkin}-least-squares type + methods}, + Volume = {105}, + Year = {1993} +} + +@Article{ balaban2017high, + Title = {High-resolution data assimilation of cardiac mechanics + applied to a dyssynchronous ventricle}, + Author = {Balaban, Gabriel and Finsberg, Henrik and Odland, Hans + Henrik and Rognes, Marie E and Ross, Stian and Sundnes, + Joakim and Wall, Samuel}, + Journal = {International journal for numerical methods in biomedical + engineering}, + Volume = {33}, + Number = {11}, + Pages = {e2863}, + Year = {2017}, + Publisher = {Wiley Online Library} +} + +@TechReport{ balay_petsc_2018, + Title = {{{PETSc Users Manual}}}, + Author = {Balay, Satish and Abhyankar, Shrirang and Adams, Mark F. + and Brown, Jed and Brune, Peter and Buschelman, Kris and + Dalcin, Lisandro and Dener, Alp and Eijkhout, Victor and + Gropp, William D. and Kaushik, Dinesh and Knepley, Matthew + G. and May, Dave A. and McInnes, Lois Curfman and Mills, + Richard Tran and Munson, Todd and Rupp, Karl and Sanan, + Patrick and Smith, Barry F. and Zampini, Stefano and Zhang, + Hong and Zhang, Hong}, + Year = {2018}, + Institution = {{Argonne National Laboratory}}, + Number = {ANL-95/11 - Revision 3.10} +} + +###Report{ balay_petsc_2018, + Title = {{{PETSc Users Manual}}}, + URL = {http://www.mcs.anl.gov/petsc}, + Number = {ANL-95/11 - Revision 3.10}, + Institution = {{Argonne National Laboratory}}, + Date = {2018}, + Author = {Balay, Satish and Abhyankar, Shrirang and Adams, Mark F. + and Brown, Jed and Brune, Peter and Buschelman, Kris and + Dalcin, Lisandro and Dener, Alp and Eijkhout, Victor and + Gropp, William D. and Kaushik, Dinesh and Knepley, Matthew + G. and May, Dave A. and McInnes, Lois Curfman and Mills, + Richard Tran and Munson, Todd and Rupp, Karl and Sanan, + Patrick and Smith, Barry F. and Zampini, Stefano and Zhang, + Hong and Zhang, Hong} +} + +@Article{ balocco-camara-frangi-08, + Title = {Towards regional elastography of intracranial aneurysms}, + Author = {Balocco, S. and Camara, O. and Frangi, A.}, + Journal = {Medical Image Computing and Computer-Assisted + Intervention--MICCAI 2008}, + Pages = {131--138}, + Year = {2008}, + Publisher = {Springer} +} + +###Article{ balocco-camara-frangi-08, + Title = {Towards regional elastography of intracranial aneurysms}, + Author = {Balocco, S. and Camara, O. and Frangi, A.}, + Journal = {Medical Image Computing and Computer-Assisted + Intervention--MICCAI 2008}, + Pages = {131--138}, + Year = {2008}, + Publisher = {Springer} +} + +@Article{ balocco-etal-07, + Title = {{Noninvasive Young's modulus evaluation of tissues + surrounding pulsatile vessels using ultrasound doppler + measurement}}, + Author = {Balocco, S. and Basset, O. and Courbebaisse, G. and Boni, + E. and Tortoli, P. and Cachard, C.}, + Journal = {Ultrasonics, Ferroelectrics and Frequency Control, IEEE + Transactions on}, + Volume = {54}, + Number = {6}, + Pages = {1265--1271}, + Year = {2007}, + Publisher = {IEEE} +} + +###Article{ balocco-etal-07, + Title = {{Noninvasive Young's modulus evaluation of tissues + surrounding pulsatile vessels using ultrasound doppler + measurement}}, + Author = {Balocco, S. and Basset, O. and Courbebaisse, G. and Boni, + E. and Tortoli, P. and Cachard, C.}, + Journal = {Ultrasonics, Ferroelectrics and Frequency Control, IEEE + Transactions on}, + Volume = {54}, + Number = {6}, + Pages = {1265--1271}, + Year = {2007}, + Publisher = {IEEE} +} + +@Article{ balocco-etal-10, + Title = {{Estimation of the viscoelastic properties of vessel walls + using a computational model and Doppler ultrasound}}, + Author = {Balocco, S. and Basset, O. and Courbebaisse, G. and Boni, + E. and Frangi, A.F. and Tortoli, P. and Cachard, C.}, + Journal = {Physics in Medicine and Biology}, + Volume = {55}, + Number = {12}, + Pages = {3557}, + Year = {2010}, + Publisher = {IOP Publishing} +} + +###Article{ balocco-etal-10, + Title = {{Estimation of the viscoelastic properties of vessel walls + using a computational model and Doppler ultrasound}}, + Author = {Balocco, S. and Basset, O. and Courbebaisse, G. and Boni, + E. and Frangi, A.F. and Tortoli, P. and Cachard, C.}, + Journal = {Physics in Medicine and Biology}, + Volume = {55}, + Number = {12}, + Pages = {3557}, + Year = {2010}, + Publisher = {IOP Publishing} +} + +@Article{ balossino_computational_2009, + Title = {Computational Models to Predict Stenosis Growth in Carotid + Arteries: Which Is the Role of Boundary Conditions?}, + Volume = {12}, + ShortTitle = {Computational Models to Predict Stenosis Growth in Carotid + Arteries}, + Number = {1}, + JournalTitle = {Computer methods in biomechanics and biomedical + engineering}, + Year = {2009}, + Pages = {113--123}, + Author = {Balossino, R. and Pennati, Giancarlo and Migliavacca, + Francesco and Formaggia, Luca and Veneziani, A. and Tuveri, + M. and Dubini, G.} +} + +@Article{ bang-lukkassen-99, + Author = {Bang, B. and Lukkassen, D.}, + fjournal = {Applications of Mathematics}, + Journal = {Appl. Math.}, + Number = {4}, + Pages = {309--319}, + Title = {Application of homogenization theory related to {S}tokes + flow in porous media}, + Volume = {44}, + Year = {1999} +} + +###Article{ bang-lukkassen-99, + Author = {Bang, B. and Lukkassen, D.}, + fjournal = {Applications of Mathematics}, + Journal = {Appl. Math.}, + Number = {4}, + Pages = {309--319}, + Title = {Application of homogenization theory related to {S}tokes + flow in porous media}, + Volume = {44}, + Year = {1999} +} + +@Book{ bankkunisch1989book, + Title = {Estimation techniques for distributed parameter systems}, + Author = {Banks, H. T. and Kunisch, K.}, + Publisher = {Birkh\"auser Boston Inc.}, + Year = {1989}, + Address = {Boston, MA}, + Series = {Systems \& Control: Foundations \& Applications}, + Volume = {1}, + date-added = {2009-03-10 18:50:38 -0700}, + date-modified = {2009-03-10 18:50:45 -0700} +} + +@Book{ banks-kunisch-89, + Address = {Boston, MA}, + Author = {Banks, H. T. and Kunisch, K.}, + date-added = {2009-03-10 18:50:38 -0700}, + date-modified = {2009-03-10 18:50:45 -0700}, + Publisher = {Birkh\"auser Boston Inc.}, + Series = {Systems \& Control: Foundations \& Applications}, + Title = {Estimation techniques for distributed parameter systems}, + Volume = {1}, + Year = {1989} +} + +###Book{ banks-kunisch-89, + Address = {Boston, MA}, + Author = {Banks, H. T. and Kunisch, K.}, + date-added = {2009-03-10 18:50:38 -0700}, + date-modified = {2009-03-10 18:50:45 -0700}, + Publisher = {Birkh\"auser Boston Inc.}, + Series = {Systems \& Control: Foundations \& Applications}, + Title = {Estimation techniques for distributed parameter systems}, + Volume = {1}, + Year = {1989} +} + +@Article{ bansch2016posteriori, + Title = {A Posteriori Error Estimates for Pressure-Correction + Schemes}, + Author = {Bänsch, E and Brenner, A}, + Journal = {SIAM Journal on Numerical Analysis}, + Volume = {54}, + Number = {4}, + Pages = {2323--2358}, + Year = {2016}, + Publisher = {SIAM} +} + +@Article{ bao2003noise, + Title = {Noise reduction for magnetic resonance images via adaptive + multiscale products thresholding}, + Author = {Bao, Paul and Zhang, Lei}, + Journal = {Medical Imaging, IEEE Transactions on}, + Volume = {22}, + Number = {9}, + Pages = {1089--1099}, + Year = {2003}, + Publisher = {IEEE} +} + +###Article{ bao2003noise, + Title = {Noise reduction for magnetic resonance images via adaptive + multiscale products thresholding}, + Author = {Bao, Paul and Zhang, Lei}, + Journal = {Medical Imaging, IEEE Transactions on}, + Volume = {22}, + Number = {9}, + Pages = {1089--1099}, + Year = {2003}, + Publisher = {IEEE} +} + +@InProceedings{ baranger-guillope-saut-96, + Author = {Baranger, J. and Guillope, C. and Saut, J-C.}, + BookTitle = {Rheology for polymer melt processing}, + Editor = {Piau, J-M. and Agassant, J-F.}, + Publisher = {Elsevier Sciences}, + Title = {Mathematical analysis of differential models for + viscoelastics fluids}, + Year = {1996} +} + +###InProceedings{ baranger-guillope-saut-96, + Author = {Baranger, J. and Guillope, C. and Saut, J-C.}, + BookTitle = {Rheology for polymer melt processing}, + Editor = {Piau, J-M. and Agassant, J-F.}, + Publisher = {Elsevier Sciences}, + Title = {Mathematical analysis of differential models for + viscoelastics fluids}, + Year = {1996} +} + +@PhdThesis{ barbe-2001, + Author = {Barbe, L.}, + School = {Univ. Paris 7}, + Title = {M{\'e}canismes d'adh{\'e}rence des leucocytes aux fibres + synth{\'e}tiques. Application {\`a} la filtration du sang.}, + Year = {2002} +} + +###PhdThesis{ barbe-2001, + Author = {Barbe, L.}, + School = {Univ. Paris 7}, + Title = {M{\'e}canismes d'adh{\'e}rence des leucocytes aux fibres + synth{\'e}tiques. Application {\`a} la filtration du sang.}, + Year = {2002} +} + +@Article{ barber-etal-07, + Title = "Efficient computational fluid dynamics mesh generation by + image registration", + Journal = "Medical Image Analysis", + Volume = "11", + Number = "6", + Pages = "648 - 662", + Year = "2007", + Note = "", + ISSN = "1361-8415", + DOI = "10.1016/j.media.2007.06.011", + Author = "D.C. Barber and E. Oubel and A.F. Frangi and D.R. Hose", + Keywords = "CFD" +} + +###Article{ barber-etal-07, + Title = "Efficient computational fluid dynamics mesh generation by + image registration", + Journal = "Medical Image Analysis", + Volume = "11", + Number = "6", + Pages = "648 - 662", + Year = "2007", + Note = "", + ISSN = "1361-8415", + DOI = "10.1016/j.media.2007.06.011", + Author = "D.C. Barber and E. Oubel and A.F. Frangi and D.R. Hose", + Keywords = "CFD" +} + +@Article{ barber-etal-12, + Title = "Registration based segment growing for vascular + segmentation", + Journal = "Submitted to IEEE Transactions on Medical Imaging", + Volume = "", + Number = "", + Pages = "", + Year = "2012", + Note = "", + ISSN = "", + DOI = "", + Author = "Barber, D.C. and Staicu, C. and Valverde, I. and Beerbaum, + P. and Hose, D.R.", + Keywords = "CFD" +} + +###Article{ barber-etal-12, + Title = "Registration based segment growing for vascular + segmentation", + Journal = "Submitted to IEEE Transactions on Medical Imaging", + Volume = "", + Number = "", + Pages = "", + Year = "2012", + Note = "", + ISSN = "", + DOI = "", + Author = "Barber, D.C. and Staicu, C. and Valverde, I. and Beerbaum, + P. and Hose, D.R.", + Keywords = "CFD" +} + +@Article{ baretta_virtual_2011, + langid = {english}, + Title = {Virtual Surgeries in Patients with Congenital Heart + Disease: A Multi-Scale Modelling Test Case}, + URL = {https://royalsocietypublishing.org/doi/abs/10.1098/rsta.2011.0130}, + ShortTitle = {Virtual Surgeries in Patients with Congenital Heart + Disease}, + Abstract = {The objective of this work is to perform a virtual + planning of surgical repairs in patients with congenital + heart diseasesto test the predictive capability of a + closed-loop multi-scale model. As a first step, we + reproduced the pre-operative state of a specific patient + with a univentricular circulation and a bidirectional + cavopulmonary anastomosis (BCPA), starting from the + patient's clinical data. Namely, by adopting a closed-loop + multi-scale approach, the boundary conditions at the inlet + and outlet sections of the three-dimensional model were + automatically calculated by a lumped parameter network. + Successively, we simulated three alternative surgical + designs of the total cavopulmonary connection (TCPC). In + particular, a T-junction of the venae cavae to the + pulmonary arteries (T-TCPC), a design with an offset + between the venae cavae (O-TCPC) and a Y-graft design + (Y-TCPC) were compared. A multi-scale closed-loop model + consisting of a lumped parameter network representing the + whole circulation and a patient-...}, + JournalTitle = {Philosophical Transactions of the Royal Society A: + Mathematical, Physical and Engineering Sciences}, + URLDate = {2019-03-09}, + Year = {2011-11-13}, + Author = {Baretta, A. and Corsini, C. and Yang, W. and + Vignon-Clementel, I. E. and Marsden, A. L. and Feinstein, + J. A. and Hsia, T.-Y. and Dubini, G. and Migliavacca, F. + and Pennati, G. and Investigators, The Modeling of + Congenital Hearts Alliance (MOCHA)} +} + +@Book{ barret-94, + Author = {R. Barrett and M. Berry and T. F. Chan and J. Demmel and + J. Donato and J. Dongarra and V. Eijkhout and R. Pozo and + C. Romine and H. Van der Vorst }, + Publisher = {SIAM}, + Title = {Templates for the Solution of Linear Systems: Building + Blocks for Iterative Methods, 2nd Edition}, + Year = {1994} +} + +###Book{ barret-94, + Author = {R. Barrett and M. Berry and T. F. Chan and J. Demmel and + J. Donato and J. Dongarra and V. Eijkhout and R. Pozo and + C. Romine and H. Van der Vorst }, + Publisher = {SIAM}, + Title = {Templates for the Solution of Linear Systems: Building + Blocks for Iterative Methods, 2nd Edition}, + Year = {1994} +} + +@Article{ barrett-01, + Author = {Barrett, K.E.}, + code = {mhd40}, + Journal = {Int. J. Numer. Meth. Engng}, + Pages = {1893-1906}, + Title = {Duct flow with a transverse magnetic field at high + Hartmann numbers}, + Volume = {50}, + Year = {2001} +} + +###Article{ barrett-01, + Author = {Barrett, K.E.}, + code = {mhd40}, + Journal = {Int. J. Numer. Meth. Engng}, + Pages = {1893-1906}, + Title = {Duct flow with a transverse magnetic field at high + Hartmann numbers}, + Volume = {50}, + Year = {2001} +} + +@Article{ baskurt_blood_2003, + langid = {english}, + Title = {Blood Rheology and Hemodynamics}, + Volume = {29}, + ISSN = {0094-6176}, + DOI = {10.1055/s-2003-44551}, + Abstract = {Blood is a two-phase suspension of formed elements (i.e., + red blood cells [RBCs], white blood cells [WBCs], + platelets) suspended in an aqueous solution of organic + molecules, proteins, and salts called plasma. The apparent + viscosity of blood depends on the existing shear forces + (i.e., blood behaves as a non-Newtonian fluid) and is + determined by hematocrit, plasma viscosity, RBC + aggregation, and the mechanical properties of RBCs. RBCs + are highly deformable, and this physical property + significantly contributes to aiding blood flow both under + bulk flow conditions and in the microcirculation. The + tendency of RBCs to undergo reversible aggregation is an + important determinant of apparent viscosity because the + size of RBC aggregates is inversely proportional to the + magnitude of shear forces; the aggregates are dispersed + with increasing shear forces, then reform under low-flow or + static conditions. RBC aggregation also affects the in vivo + fluidity of blood, especially in the low-shear regions of + the circulatory system. Blood rheology has been reported to + be altered in various physiopathological processes: (1) + Alterations of hematocrit significantly contribute to + hemorheological variations in diseases and in certain + extreme physiological conditions; (2) RBC deformability is + sensitive to local and general homeostasis, with RBC + deformability affected by alterations of the properties and + associations of membrane skeletal proteins, the ratio of + RBC membrane surface area to cell volume, cell morphology, + and cytoplasmic viscosity. Such alterations may result from + genetic disorders or may be induced by such factors as + abnormal local tissue metabolism, oxidant stress, and + activated leukocytes; and (3) RBC aggregation is mainly + determined by plasma protein composition and surface + properties of RBCs, with increased plasma concentrations of + acute phase reactants in inflammatory disorders a common + cause of increased RBC aggregation. In addition, RBC + aggregation tendency can be modified by alterations of RBC + surface properties because of RBC in vivo aging, + oxygen-free radicals, or proteolytic enzymes. Impairment of + blood fluidity may significantly affect tissue perfusion + and result in functional deteriorations, especially if + disease processes also disturb vascular properties.}, + Number = {5}, + JournalTitle = {Seminars in Thrombosis and Hemostasis}, + ShortJournal = {Semin. Thromb. Hemost.}, + Year = {2003-10}, + Pages = {435-450}, + Author = {Baskurt, Oguz K. and Meiselman, Herbert J.}, + EPrintType = {pmid}, + EPrint = {14631543} +} + +@Collection{ baskurt_handbook_2007, + Location = {{Amsterdam ; Washington, DC}}, + Title = {Handbook of Hemorheology and Hemodynamics}, + ISBN = {978-1-58603-771-0}, + PageTotal = {455}, + Number = {v. 69}, + Series = {Biomedical and Health Research}, + Publisher = {{IOS Press}}, + Year = {2007}, + Editor = {Baskurt, Oğuz K.}, + Note = {OCLC: ocn183145995} +} + +@Article{ basser1994, + Title = {{Estimation of the Effective Self-Diffusion Tensor from + the NMR Spin Echo}}, + Journal = "Journal of Magnetic Resonance, Series B", + Volume = "103", + Number = "3", + Pages = "247 - 254", + Year = "1994", + Note = "", + ISSN = "1064-1866", + Author = "P.J. Basser and J. Mattiello and D. Lebihan" +} + +@Book{ batchelor_introduction_2010, + langid = {english}, + Location = {{Cambridge}}, + Title = {An Introduction to Fluid Dynamics}, + Edition = {1. Cambridge mathematical ed., 14. print}, + ISBN = {978-0-521-66396-0}, + PageTotal = {615}, + Series = {Cambridge Mathematical Library}, + Publisher = {{Cambridge Univ. Press}}, + Date = {2010}, + Author = {Batchelor, G. K.}, + Note = {OCLC: 838184093} +} + +@Book{ bathe-96, + Author = {Bathe, K.J.}, + Publisher = {Prentice Hall}, + Title = {Finite Element Procedures}, + Year = 1996 +} + +###Book{ bathe-96, + Author = {Bathe, K.J.}, + Publisher = {Prentice Hall}, + Title = {Finite Element Procedures}, + Year = 1996 +} + +@Article{ bathe-kamm-99, + Author = {Bathe, M. and Kamm, R.D.}, + code = {fsi10}, + Journal = {J. Biomech. Engng.}, + Pages = {361-369}, + Title = {A fluid-structure interaction finite element analysis of + pulsative blood flow through a compliant stenotic artery}, + Volume = {121}, + Year = {1999} +} + +###Article{ bathe-kamm-99, + Author = {Bathe, M. and Kamm, R.D.}, + code = {fsi10}, + Journal = {J. Biomech. Engng.}, + Pages = {361-369}, + Title = {A fluid-structure interaction finite element analysis of + pulsative blood flow through a compliant stenotic artery}, + Volume = {121}, + Year = {1999} +} + +@Article{ bathe-zhang-04, + Author = {Bathe, K.J. and Zhang, H.}, + Journal = {Int. J. Num. Meth. Engng.}, + Title = {Finite element developments for general fluid flows with + structural interactions}, + Year = {2004} +} + +###Article{ bathe-zhang-04, + Author = {Bathe, K.J. and Zhang, H.}, + Journal = {Int. J. Num. Meth. Engng.}, + Title = {Finite element developments for general fluid flows with + structural interactions}, + Year = {2004} +} + +@Article{ bathe-zhang-ji-99, + Author = {Bathe, K.J. and Zhang, H. and Ji, S.}, + Journal = {Comp. \& Struct.}, + Number = {1-3}, + Pages = {1-16}, + Title = {Finite element analysis of fluid flows fully coupled with + structural interaction}, + Volume = {72}, + Year = {1999} +} + +###Article{ bathe-zhang-ji-99, + Author = {Bathe, K.J. and Zhang, H. and Ji, S.}, + Journal = {Comp. \& Struct.}, + Number = {1-3}, + Pages = {1-16}, + Title = {Finite element analysis of fluid flows fully coupled with + structural interaction}, + Volume = {72}, + Year = {1999} +} + +@Article{ baumgartner2009echo, + Title = "Echocardiographic Assessment of Valve Stenosis: EAE/ASE + Recommendations for Clinical Practice", + Author = "Helmut Baumgartner and Judy Hung and Javier Bermejo and + Chambers, {John B.} and Arturo Evangelista and Griffin, + {Brian P.} and Bernard Iung and Otto, {Catherine M.} and + Pellikka, {Patricia A.} and Miguel Quiñones", + Year = "2009", + Month = "1", + DOI = "10.1016/j.echo.2008.11.029", + Volume = "22", + Pages = "1--23", + Journal = "Journal of the American Society of Echocardiography", + ISSN = "0894-7317", + Publisher = "Mosby Inc.", + Number = "1" +} + +@Article{ baumgartner_echocardiographic_2009, + langid = {english}, + Title = {Echocardiographic {{Assessment}} of {{Valve Stenosis}}: + {{EAE}}/{{ASE Recommendations}} for {{Clinical Practice}}}, + Volume = {22}, + ISSN = {08947317}, + URL = {https://linkinghub.elsevier.com/retrieve/pii/S0894731708007761}, + DOI = {10.1016/j.echo.2008.11.029}, + ShortTitle = {Echocardiographic {{Assessment}} of {{Valve Stenosis}}}, + Number = {1}, + JournalTitle = {Journal of the American Society of Echocardiography}, + URLDate = {2019-02-09}, + Year = {2009-01}, + Pages = {1-23}, + Author = {Baumgartner, Helmut and Hung, Judy and Bermejo, Javier and + Chambers, John B. and Evangelista, Arturo and Griffin, + Brian P. and Iung, Bernard and Otto, Catherine M. and + Pellikka, Patricia A. and Qui\~{}nones, Miguel} +} + +@Article{ baumgartner_esc_2010, + Title = {{{ESC Guidelines}} for the Management of Grown-up + Congenital Heart Disease (New Version 2010) {{The Task + Force}} on the {{Management}} of {{Grown}}-up {{Congenital + Heart Disease}} of the {{European Society}} of + {{Cardiology}} ({{ESC}})}, + Volume = {31}, + Number = {23}, + JournalTitle = {European heart journal}, + Year = {2010}, + Pages = {2915--2957}, + Author = {Baumgartner, Helmut and Bonhoeffer, Philipp and De Groot, + Natasja MS and de Haan, Fokko and Deanfield, John Erik and + Galie, Nazzareno and Gatzoulis, Michael A. and + Gohlke-Baerwolf, Christa}, + Options = {useprefix=true} +} + +@Article{ baumgartner_overestimation_1999, + Title = {?Overestimation? of catheter gradients by Doppler + ultrasound in patients with aortic stenosis: a predictable + manifestation of pressure recovery}, + Author = {Baumgartner, Helmut and Stefenelli, Thomas and + Niederberger, Julia and Schima, Heinrich and Maurer, + Gerald}, + Journal = {Journal of the American College of Cardiology}, + Volume = {33}, + Number = {6}, + Pages = {1655--1661}, + Year = {1999}, + Publisher = {Journal of the American College of Cardiology} +} + +@Article{ bayer-etal-12, + Year = {2012}, + ISSN = {0090-6964}, + Journal = {Annals of Biomedical Engineering}, + Volume = {40}, + Issue = {10}, + Title = {A Novel Rule-Based Algorithm for Assigning Myocardial + Fiber Orientation to Computational Heart Models}, + Publisher = {Springer US}, + Keywords = {Diffusion tensor; Magnetic resonance; Imaging; Finite + element; Mesh; Laplace–Dirichlet}, + Author = {Bayer, J.D. and Blake, R.C. and Plank, G. and Trayanova, + N.A.}, + Pages = {2243-2254}, + Language = {English} +} + +@Article{ bazilevs-gohean-hughes-09, + Author = {Bazilevs, Y. and Gohean, JR and Hughes, TJR and Moser, RD + and Zhang, Y.}, + Journal = {Computer Methods in Applied Mechanics and Engineering}, + Number = {45-46}, + Pages = {3534--3550}, + Publisher = {Elsevier}, + Title = {Patient-specific isogeometric fluid-structure interaction + analysis of thoracic aortic blood flow due to implantation + of the Jarvik 2000 left ventricular assist device}, + Volume = {198}, + Year = {2009} +} + +###Article{ bazilevs-gohean-hughes-09, + Author = {Bazilevs, Y. and Gohean, JR and Hughes, TJR and Moser, RD + and Zhang, Y.}, + Journal = {Computer Methods in Applied Mechanics and Engineering}, + Number = {45-46}, + Pages = {3534--3550}, + Publisher = {Elsevier}, + Title = {Patient-specific isogeometric fluid-structure interaction + analysis of thoracic aortic blood flow due to implantation + of the Jarvik 2000 left ventricular assist device}, + Volume = {198}, + Year = {2009} +} + +@Article{ bazilevs_variational_2007, + Title = {Variational Multiscale Residual-Based Turbulence Modeling + for Large Eddy Simulation of Incompressible Flows}, + Volume = {197}, + URL = {http://www.sciencedirect.com/science/article/pii/S0045782507003027}, + Number = {1}, + JournalTitle = {Computer Methods in Applied Mechanics and Engineering}, + URLDate = {2016-11-06}, + Date = {2007}, + Pages = {173--201}, + Author = {Bazilevs, Y. and Calo, V. M. and Cottrell, J. A. and + Hughes, T. J. R. and Reali, A. and Scovazzi, G.} +} + +@Article{ beale-81, + Author = {Beale, J.T.}, + Journal = {Comm. Pure Appl. Math.}, + Pages = {359-392}, + Title = {The initial value problem for the {Navier-Stokes} + equations with a free surface}, + Volume = {34}, + Year = {1981} +} + +###Article{ beale-81, + Author = {Beale, J.T.}, + Journal = {Comm. Pure Appl. Math.}, + Pages = {359-392}, + Title = {The initial value problem for the {Navier-Stokes} + equations with a free surface}, + Volume = {34}, + Year = {1981} +} + +@Article{ beale-84, + Author = {Beale, J.T.}, + Journal = {Arch. Rat. Mech. Anal.}, + Pages = {307-352}, + Title = {Large time regularity of viscous surface waves}, + Volume = {84}, + Year = {1984} +} + +###Article{ beale-84, + Author = {Beale, J.T.}, + Journal = {Arch. Rat. Mech. Anal.}, + Pages = {307-352}, + Title = {Large time regularity of viscous surface waves}, + Volume = {84}, + Year = {1984} +} + +@Article{ beale-hou-lowengrub-93, + Author = {Beale, J.T. and Hou, T.Y. and Lowengrub, J.S.}, + Journal = {Comm. Pure Appl. Math.}, + Pages = {1269-1301}, + Title = {Growth rates for the linearized motion of fluid interfaces + away from equilibrium}, + Volume = {46}, + Year = {1993} +} + +###Article{ beale-hou-lowengrub-93, + Author = {Beale, J.T. and Hou, T.Y. and Lowengrub, J.S.}, + Journal = {Comm. Pure Appl. Math.}, + Pages = {1269-1301}, + Title = {Growth rates for the linearized motion of fluid interfaces + away from equilibrium}, + Volume = {46}, + Year = {1993} +} + +@InCollection{ beale-nishida-85, + Author = {Beale, J.T. and Nishida, T.}, + BookTitle = {Recent topics in nonlinear {PDE II}}, + Pages = {1-14}, + Publisher = {North-Holland}, + Series = {Lect. Notes Numer. Appl. Anal.}, + Title = {Large-time behaviour of viscous surface waves}, + Volume = {8}, + Year = {1985} +} + +###InCollection{ beale-nishida-85, + Author = {Beale, J.T. and Nishida, T.}, + BookTitle = {Recent topics in nonlinear {PDE II}}, + Pages = {1-14}, + Publisher = {North-Holland}, + Series = {Lect. Notes Numer. Appl. Anal.}, + Title = {Large-time behaviour of viscous surface waves}, + Volume = {8}, + Year = {1985} +} + +@Article{ becker-braack-vexler-05, + Author = {Becker, R. and Braack, M. and Vexler, B.}, + Title = {Parameter identification for chemical models in combustion + problems}, + Journal = {Appl. Numer. Math.}, + Volume = {54}, + Year = {2005}, + Number = {3-4}, + Pages = {519--536} +} + +###Article{ becker-braack-vexler-05, + Author = {Becker, R. and Braack, M. and Vexler, B.}, + Title = {Parameter identification for chemical models in combustion + problems}, + Journal = {Appl. Numer. Math.}, + Volume = {54}, + Year = {2005}, + Number = {3-4}, + Pages = {519--536} +} + +@Article{ becker-hansbo-stenberg-03, + Author = {Becker, R. and Hansbo, P. and Stenberg, R.}, + Journal = {M2AN Math. Model. Numer. Anal.}, + Number = {2}, + Pages = {209--225}, + Title = {A finite element method for domain decomposition with + non-matching grids}, + Volume = {37}, + Year = {2003} +} + +###Article{ becker-hansbo-stenberg-03, + Author = {Becker, R. and Hansbo, P. and Stenberg, R.}, + Journal = {M2AN Math. Model. Numer. Anal.}, + Number = {2}, + Pages = {209--225}, + Title = {A finite element method for domain decomposition with + non-matching grids}, + Volume = {37}, + Year = {2003} +} + +@Article{ becker03, + Author = "Becker, R. and Hansbo, P. and Stenberg, R.", + Title = "{A finite element method for domain decomposition with + non-matching grids}", + Journal = m2an, + Volume = "37", + Number = "2", + Pages = "209--225", + Year = "2003" +} + +###Article{ becker03, + Author = "Becker, R. and Hansbo, P. and Stenberg, R.", + Title = "{A finite element method for domain decomposition with + non-matching grids}", + Journal = m2an, + Volume = "37", + Number = "2", + Pages = "209--225", + Year = "2003" +} + +@Book{ becker1996weighted, + Title = {Weighted a posteriori error control in FE methods}, + Author = {Becker, Roland and Rannacher, Rolf}, + Year = {1996}, + Publisher = {Citeseer} +} + +@Article{ beekman-etal-83, + Author = {Beekman, R.H. and Katz, B.P. and Moorehead-Steffens, C. + and Rocchini, A.P.}, + Title = {Altered baroreceptor function in children with systolic + hypertension after coarctation repair}, + Journal = {Am J Cardiol}, + Volume = {52}, + Year = {1983}, + Number = {1}, + Pages = {112-7}, + pubmedid = {6858899}, + ISSN = {0002-9149} +} + +###Article{ beekman-etal-83, + Author = {Beekman, R.H. and Katz, B.P. and Moorehead-Steffens, C. + and Rocchini, A.P.}, + Title = {Altered baroreceptor function in children with systolic + hypertension after coarctation repair}, + Journal = {Am J Cardiol}, + Volume = {52}, + Year = {1983}, + Number = {1}, + Pages = {112-7}, + URL = {http://www.biomedsearch.com/nih/Altered-baroreceptor-function-in-children/6858899.html}, + pubmedid = {6858899}, + ISSN = {0002-9149} +} + +@InCollection{ begue-conca-murat-pironneau-88, + Address = {Harlow}, + Author = {B{\`e}gue, C. and Conca, C. and Murat, F. and Pironneau, + O.}, + BookTitle = {Nonlinear partial differential equations and their + applications. Coll{\`e}ge de France Seminar, Vol.\ IX + (Paris, 1985--1986)}, + Pages = {179--264}, + Publisher = {Longman Sci. Tech.}, + Title = {Les {\'e}quations de {S}tokes et de {N}avier-{S}tokes avec + des conditions aux limites sur la pression}, + Year = {1988} +} + +###InCollection{ begue-conca-murat-pironneau-88, + Address = {Harlow}, + Author = {B{\`e}gue, C. and Conca, C. and Murat, F. and Pironneau, + O.}, + BookTitle = {Nonlinear partial differential equations and their + applications. Coll{\`e}ge de France Seminar, Vol.\ IX + (Paris, 1985--1986)}, + Pages = {179--264}, + Publisher = {Longman Sci. Tech.}, + Title = {Les {\'e}quations de {S}tokes et de {N}avier-{S}tokes avec + des conditions aux limites sur la pression}, + Year = {1988} +} + +@Article{ beirao-96, + Author = {Beirao da Veiga, H.}, + Journal = {Nonlinear Anal., Theory, Meth. Appl.}, + Number = {11}, + Pages = {1229-1239}, + Title = {Long time behaviour of the solutions to the + {Navier-Stokes} equations with diffusion}, + Volume = {27}, + Year = {1996} +} + +###Article{ beirao-96, + Author = {Beirao da Veiga, H.}, + Journal = {Nonlinear Anal., Theory, Meth. Appl.}, + Number = {11}, + Pages = {1229-1239}, + Title = {Long time behaviour of the solutions to the + {Navier-Stokes} equations with diffusion}, + Volume = {27}, + Year = {1996} +} + +@Article{ bel-brunon2014jmbbm, + Title = {Numerical identification method for the non-linear + viscoelastic compressible behavior of soft tissue using + uniaxial tensile tests and image registration ? Application + to rat lung parenchyma }, + Author = {A. Bel-Brunon and S. Kehl and C. Martin and S. Uhlig and + W.A. Wall}, + Journal = {Journal of the Mechanical Behavior of Biomedical Materials + }, + Year = {2014}, + Pages = {360 - 374}, + Volume = {29}, + Abstract = {Abstract This paper presents an improved identification + method of the constitutive properties of lung parenchyma. + We aim to determine the non-linear viscoelastic behavior of + lung parenchyma with a particular focus on the compressible + properties - i.e. the ability to change volume. Uniaxial + tensile tests are performed on living precision-cut rat + lung slices. Image registration is used to compute the + displacement field at the surface of the sample. The + constitutive model consists of a hyperelastic potential + split into volumetric and isochoric contributions and a + viscous contribution. This allows for the description of + the experimentally observed hysteresis loop. The + identification is performed numerically: each test is + simulated using the realistic geometry of the sample; the + difference between the measured and computed displacements + is minimized with an optimization algorithm. We compare + several hyperelastic potentials and we can determine the + most suitable law for rat lung parenchyma. An exponential + potential or a polynomial potential with a first order term + and a third or higher order term give similarly + satisfactory results. The identified parameters are: for + the volumetric contribution: ? =7.25e4 Pa, for the + exponential form: k1=4.34e3 Pa, k2=5.92, for the polynomial + form: C1=2.87e3 Pa, C3=3.83e4 Pa. The identification of the + time parameter for the viscous contribution shows that it + depends on the loading frequency (0.2 Hz: ? =0.257 s, 0.4 + Hz: ? =0.123 s, 0.8 Hz: ? =0.050 s). Adding a viscous + contribution significantly increases the accuracy of the + identification. }, + DOI = {http://dx.doi.org/10.1016/j.jmbbm.2013.09.018}, + File = {bel-brunon14.pdf:bel-brunon14.pdf:PDF}, + ISSN = {1751-6161}, + Keywords = {Lung parenchyma}, + timestamp = {2015/09/23}, + URL = {http://www.sciencedirect.com/science/article/pii/S1751616113003196} +} + +@Unpublished{ belhadj, + Author = {Belhadj, M.}, + Note = {Thesis in preparation, Univ. Paris 6 and ENIT}, + Title = {Modelling and simulation of white blood cells filtration} +} + +###Unpublished{ belhadj, + Author = {Belhadj, M.}, + Note = {Thesis in preparation, Univ. Paris 6 and ENIT}, + Title = {Modelling and simulation of white blood cells filtration} +} + +@Unpublished{ belhadj-cances-gerbeau-mikelic, + Author = {Belhadj, M. and Canc{\`e}s, E. and Gerbeau, J.F. and + Mikelic, A.}, + Note = {INRIA Research Report No 5277, 2004}, + Title = { Homogenization approach to filtration through a fibrous + medium} +} + +###Unpublished{ belhadj-cances-gerbeau-mikelic, + Author = {Belhadj, M. and Canc{\`e}s, E. and Gerbeau, J.F. and + Mikelic, A.}, + Note = {INRIA Research Report No 5277, 2004}, + Title = { Homogenization approach to filtration through a fibrous + medium} +} + +@Article{ belhadj-gerbeau-perthame-03, + Author = {Belhadj, M. and Gerbeau, J-F. and Perthame, B.}, + Journal = {Asymptotic Analysis}, + Number = {1}, + Pages = {41-54}, + Title = { A multiscale colloid transport model with anistropic + degenerate diffusion}, + Volume = {34}, + Year = {2003} +} + +###Article{ belhadj-gerbeau-perthame-03, + Author = {Belhadj, M. and Gerbeau, J-F. and Perthame, B.}, + Journal = {Asymptotic Analysis}, + Number = {1}, + Pages = {41-54}, + Title = { A multiscale colloid transport model with anistropic + degenerate diffusion}, + Volume = {34}, + Year = {2003} +} + +@Article{ beliaev-kozlov-96, + Author = {Beliaev, A. Yu. and Kozlov, S. M.}, + fjournal = {Communications on Pure and Applied Mathematics}, + Journal = {Comm. Pure Appl. Math.}, + Number = {1}, + Pages = {1--34}, + Title = {Darcy equation for random porous media}, + Volume = {49}, + Year = {1996} +} + +###Article{ beliaev-kozlov-96, + Author = {Beliaev, A. Yu. and Kozlov, S. M.}, + fjournal = {Communications on Pure and Applied Mathematics}, + Journal = {Comm. Pure Appl. Math.}, + Number = {1}, + Pages = {1--34}, + Title = {Darcy equation for random porous media}, + Volume = {49}, + Year = {1996} +} + +@Book{ bellman-57, + Author = {Bellman, R.E.}, + date-added = {2011-08-24 11:52:57 +0200}, + date-modified = {2011-08-24 11:53:28 +0200}, + Publisher = {Princeton University Press}, + Title = {Dynamic programming}, + Year = {1957} +} + +###Book{ bellman-57, + Author = {Bellman, R.E.}, + date-added = {2011-08-24 11:52:57 +0200}, + date-modified = {2011-08-24 11:53:28 +0200}, + Publisher = {Princeton University Press}, + Title = {Dynamic programming}, + Year = {1957} +} + +@Article{ beltrami1994circ, + Title = {Structural basis of end-stage failure in ischemic + cardiomyopathy in humans.}, + Author = {Beltrami, C A and Finato, N and Rocco, M and Feruglio, G A + and Puricelli, C and Cigola, E and Quaini, F and + Sonnenblick, E H and Olivetti, G and Anversa, P}, + Journal = {Circulation}, + Year = {1994}, + Number = {1}, + Pages = {151-63}, + Volume = {89}, + Abstract = {BACKGROUND Ischemic cardiomyopathy is characterized by + myocyte loss, reactive cellular hypertrophy, and + ventricular scarring. However, the relative contribution of + these tissue and cellular processes to late failure remains + to be determined.METHODS AND RESULTS Ten hearts were + obtained from individuals undergoing cardiac + transplantation as a result of chronic coronary artery + disease in its terminal stage. An identical number of + control hearts were collected at autopsy from patients who + died from causes other than cardiovascular disease, and + morphometric methodologies were applied to the analysis of + the left and right ventricular myocardium. Left ventricular + hypertrophy evaluated as a change in organ weight, + aggregate myocyte mass, and myocyte cell volume per nucleus + showed increases of 85%, 47%, and 103%, respectively. + Corresponding increases in the right ventricle were 75%, + 74%, and 112%. Myocyte loss, which accounted for 28% and + 30% in the left and right ventricles, was responsible for + the difference in the assessment of myocyte hypertrophy at + the ventricular, tissue, and cellular levels. Left + ventricular muscle cell hypertrophy was accomplished + through a 16% and 51% increase in myocyte diameter and + length, whereas right ventricular myocyte hypertrophy was + the consequence of a 13% and 67% increase in these linear + dimensions, respectively. Moreover, a 36% reduction in the + number of myocytes included in the thickness of the left + ventricular wall was found. Collagen accumulation in the + form of segmental, replacement, and interstitial fibrosis + comprised an average 28% and 13% of the left and right + ventricular myocardia, respectively. The combination of + cell loss and myocardial fibrosis, myocyte lengthening, and + mural slippage of cells resulted in 4.6-fold expansion of + left ventricular cavitary volume and a 56% reduction in the + ventricular mass-to-chamber volume ratio.CONCLUSIONS These + results are consistent with the contention that both + myocyte and collagen compartments participate in the + development of decompensated eccentric ventricular + hypertrophy in the cardiomyopathic heart of ischemic + origin.}, + DOI = {10.1161/01.CIR.89.1.151}, + EPrint = {http://circ.ahajournals.org/content/89/1/151.full.pdf+html}, + File = {beltrami94.pdf:beltrami94.pdf:PDF}, + timestamp = {2015/09/17}, + URL = {http://circ.ahajournals.org/content/89/1/151.abstract} +} + +@PhdThesis{ ben-salah-99, + Annote = {mhd, finite element}, + Author = {Ben Salah, N.}, + code = {mhd37}, + School = {Concordia University}, + Title = {A finite element method for the fully-coupled + magnetohydrodynamics}, + Year = {1999} +} + +###PhdThesis{ ben-salah-99, + Annote = {mhd, finite element}, + Author = {Ben Salah, N.}, + code = {mhd37}, + School = {Concordia University}, + Title = {A finite element method for the fully-coupled + magnetohydrodynamics}, + Year = {1999} +} + +@TechReport{ ben-salah-soulaimani-habashi-99, + Annote = {mhd, finite element, stabilization}, + Author = {Ben Salah, N. and Soulaimani, A. and Habashi, W. G.}, + code = {mhd20}, + Institution = {AIAA 99-3322}, + Title = {A fully coupled finite element method for the 3{D} {MHD} + equations with a {GMRES}-based algorithm}, + Year = {1999} +} + +###TechReport{ ben-salah-soulaimani-habashi-99, + Annote = {mhd, finite element, stabilization}, + Author = {Ben Salah, N. and Soulaimani, A. and Habashi, W. G.}, + code = {mhd20}, + Institution = {AIAA 99-3322}, + Title = {A fully coupled finite element method for the 3{D} {MHD} + equations with a {GMRES}-based algorithm}, + Year = {1999} +} + +@Article{ ben-salah-soulaimani-habashi-fortin-99, + Annote = {mhd, finite element, stabilization}, + Author = {Ben Salah, N. and Soulaimani, A. and Habashi, W. G. and + Fortin, M.}, + code = {mhd21}, + Journal = {Int. Jour. Num. Meth. Fluids}, + Pages = {535-554}, + Title = {A conservative stabilized finite element method for the + magneto-hydrodynamic equations}, + Volume = {29}, + Year = {1999} +} + +###Article{ ben-salah-soulaimani-habashi-fortin-99, + Annote = {mhd, finite element, stabilization}, + Author = {Ben Salah, N. and Soulaimani, A. and Habashi, W. G. and + Fortin, M.}, + code = {mhd21}, + Journal = {Int. Jour. Num. Meth. Fluids}, + Pages = {535-554}, + Title = {A conservative stabilized finite element method for the + magneto-hydrodynamic equations}, + Volume = {29}, + Year = {1999} +} + +@Article{ benney-73, + Author = {Benney, D. J.}, + Journal = {Stud. Appl. Math.}, + Pages = {45--50}, + Title = {Some properties of long waves}, + Volume = {52}, + Year = {1973} +} + +###Article{ benney-73, + Author = {Benney, D. J.}, + Journal = {Stud. Appl. Math.}, + Pages = {45--50}, + Title = {Some properties of long waves}, + Volume = {52}, + Year = {1973} +} + +@Book{ bensoussan-71, + Author = {Bensoussan, A.}, + date-added = {2009-03-10 12:00:24 -0700}, + date-modified = {2009-03-10 12:00:34 -0700}, + Publisher = {Dunod}, + rating = {5}, + read = {Yes}, + Title = {Filtrage optimal des syst{\`e}mes lin{\'e}aires}, + Year = {1971} +} + +###Book{ bensoussan-71, + Author = {Bensoussan, A.}, + date-added = {2009-03-10 12:00:24 -0700}, + date-modified = {2009-03-10 12:00:34 -0700}, + Publisher = {Dunod}, + rating = {5}, + read = {Yes}, + Title = {Filtrage optimal des syst{\`e}mes lin{\'e}aires}, + Year = {1971} +} + +@Book{ bensoussan-lions-papanicolaou-78, + Address = {Amsterdam}, + Author = {Bensoussan, A. and Lions, J.-L. and Papanicolaou, G.}, + Pages = {xxiv+700}, + Publisher = {North-Holland Publishing Co.}, + Series = {Studies in Mathematics and its Applications}, + Title = {Asymptotic analysis for periodic structures}, + Volume = {5}, + Year = {1978} +} + +###Book{ bensoussan-lions-papanicolaou-78, + Address = {Amsterdam}, + Author = {Bensoussan, A. and Lions, J.-L. and Papanicolaou, G.}, + Pages = {xxiv+700}, + Publisher = {North-Holland Publishing Co.}, + Series = {Studies in Mathematics and its Applications}, + Title = {Asymptotic analysis for periodic structures}, + Volume = {5}, + Year = {1978} +} + +@Article{ benzi_numerical_2005, + Title = {Numerical Solution of Saddle Point Problems}, + Author = {Benzi, Michele and Golub, Gene H. and Liesen, J{\"o}rg}, + Year = {2005}, + Month = may, + Volume = {14}, + Pages = {1--137}, + ISSN = {0962-4929, 1474-0508}, + DOI = {10.1017/S0962492904000212}, + Journal = {Acta Numerica}, + Language = {en} +} + +@Article{ berberoglu2014ejms, + Title = {Computational modeling of coupled cardiac electromechanics + incorporating cardiac dysfunctions }, + Author = {Ezgi Berbero?lu and H. Onur Solmaz and Serdar Göktepe}, + Journal = {European Journal of Mechanics - A/Solids }, + Year = {2014}, + Note = {Frontiers in Finite-Deformation Electromechanics }, + Pages = {60 - 73}, + Volume = {48}, + Abstract = {Abstract Computational models have huge potential to + improve our understanding of the coupled biological, + electrical, and mechanical underpinning mechanisms of + cardiac function and diseases. This contribution is + concerned with the computational modeling of different + cardiac dysfunctions related to the excitation?contraction + coupling in the heart. To this end, the coupled problem of + cardiac electromechanics is formulated through the + conservation of linear momentum equation and the excitation + equation formulated in the Eulerian setting and solved + monolithically through an entirely finite element-based + implicit algorithm. To model the electromechanical + coupling, we use the recently proposed, novel generalized + Hill model that is based on the multiplicative + decomposition of the deformation gradient into the active + and passive parts and on the additive split of the free + energy function. This framework enables us to combine the + advantageous features of the active-stress and the active- + strain models suggested in literature. The proposed coupled + approach is further supplemented by the Windkesel-based + model to account for the pressure evolution within the + ventricular chambers during the cardiac cycle. This allows + us to generate the pressure?volume curves as a diagnostic + tool to detect possible cardiac dysfunctions and to assess + the efficiency of the heart function. The proposed model is + employed to investigate different pathological cases that + include infarction, eccentric hypertrophy, and concentric + hypertrophy. The effects of these distinct cardiac + dysfunctions on the pressure?volume curves and on the + overall excitation?contraction of the heart are + computationally examined and compared to the clinical + observations reported in literature. }, + DOI = {http://dx.doi.org/10.1016/j.euromechsol.2014.02.021}, + File = {berberoglu14.pdf:berberoglu14.pdf:PDF}, + ISSN = {0997-7538}, + Keywords = {Coupled cardiac electromechanics}, + timestamp = {2015/09/22}, + URL = {http://www.sciencedirect.com/science/article/pii/S0997753814000540} +} + +@Article{ berger-jameson-85, + Author = {Berger, M.J. and Jameson, A.}, + Journal = {AIAA J.}, + Number = {4}, + Pages = {561--568}, + Title = {{Automatic adaptive grid refinement for Euler equations}}, + Volume = {23}, + Year = {1985} +} + +###Article{ berger-jameson-85, + Author = {Berger, M.J. and Jameson, A.}, + Journal = {AIAA J.}, + Number = {4}, + Pages = {561--568}, + Title = {{Automatic adaptive grid refinement for Euler equations}}, + Volume = {23}, + Year = {1985} +} + +@Book{ bergh-lofstrom-76, + Author = {Bergh, J. and L{\"o}fstr{\"o}m, J.}, + Publisher = {Springer-Verlag}, + Title = {Interpolation spaces, an introduction}, + Year = {1976} +} + +###Book{ bergh-lofstrom-76, + Author = {Bergh, J. and L{\"o}fstr{\"o}m, J.}, + Publisher = {Springer-Verlag}, + Title = {Interpolation spaces, an introduction}, + Year = {1976} +} + +@Article{ bermudez-salgado, + Author = {Berm{\'u}dez, A. and Salgado, P.}, + code = {mhd46}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Number = {1-3}, + Pages = {391--412}, + Title = {A domain decomposition/finite element method for the + numerical simulation of electrolytic cells}, + Volume = {188}, + Year = {2000} +} + +###Article{ bermudez-salgado, + Author = {Berm{\'u}dez, A. and Salgado, P.}, + code = {mhd46}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Number = {1-3}, + Pages = {391--412}, + Title = {A domain decomposition/finite element method for the + numerical simulation of electrolytic cells}, + Volume = {188}, + Year = {2000} +} + +@InCollection{ bernardi-maday-patera-93, + Address = {Dordrecht}, + Author = {Bernardi, C. and Maday, Y. and Patera, A. T.}, + BookTitle = {Asymptotic and numerical methods for partial differential + equations with critical parameters (Beaune, 1992)}, + Pages = {269--286}, + Publisher = {Kluwer Acad. Publ.}, + Series = {NATO Adv. Sci. Inst. Ser. C Math. Phys. Sci.}, + Title = {Domain decomposition by the mortar element method}, + Volume = {384}, + Year = {1993} +} + +###InCollection{ bernardi-maday-patera-93, + Address = {Dordrecht}, + Author = {Bernardi, C. and Maday, Y. and Patera, A. T.}, + BookTitle = {Asymptotic and numerical methods for partial differential + equations with critical parameters (Beaune, 1992)}, + Pages = {269--286}, + Publisher = {Kluwer Acad. Publ.}, + Series = {NATO Adv. Sci. Inst. Ser. C Math. Phys. Sci.}, + Title = {Domain decomposition by the mortar element method}, + Volume = {384}, + Year = {1993} +} + +@InCollection{ bernardi-maday-patera-94, + Author = {Bernardi, C. and Maday, Y. and Patera, A. T.}, + BookTitle = {Nonlinear partial differential equations and their + applications. Coll{\`e}ge de France Seminar, Vol.\ XI + (Paris, 1989--1991)}, + Pages = {13--51}, + Publisher = {Longman Sci. Tech.}, + Series = {Pitman Res. Notes Math. Ser.}, + Title = {A new nonconforming approach to domain decomposition: the + mortar element method}, + Volume = {299}, + Year = {1994} +} + +###InCollection{ bernardi-maday-patera-94, + Author = {Bernardi, C. and Maday, Y. and Patera, A. T.}, + BookTitle = {Nonlinear partial differential equations and their + applications. Coll{\`e}ge de France Seminar, Vol.\ XI + (Paris, 1989--1991)}, + Pages = {13--51}, + Publisher = {Longman Sci. Tech.}, + Series = {Pitman Res. Notes Math. Ser.}, + Title = {A new nonconforming approach to domain decomposition: the + mortar element method}, + Volume = {299}, + Year = {1994} +} + +@Article{ bernardi-metivet-pernaud-thomas-95, + Author = {Bernardi, C. and M{\'e}tivet, B. and Pernaud-Thomas, B.}, + Journal = {Mod{\'e}lisation math{\'e}\-matique et Analyse + num{\'e}\-rique}, + Number = {7}, + Pages = {871-921}, + Title = {Couplage des {\'e}quations de {Navier-Stokes} et de la + chaleur~: le mod{\`e}le et son approximation par + {\'e}l{\'e}ments finis}, + Volume = {29}, + Year = {1995} +} + +###Article{ bernardi-metivet-pernaud-thomas-95, + Author = {Bernardi, C. and M{\'e}tivet, B. and Pernaud-Thomas, B.}, + Journal = {Mod{\'e}lisation math{\'e}\-matique et Analyse + num{\'e}\-rique}, + Number = {7}, + Pages = {871-921}, + Title = {Couplage des {\'e}quations de {Navier-Stokes} et de la + chaleur~: le mod{\`e}le et son approximation par + {\'e}l{\'e}ments finis}, + Volume = {29}, + Year = {1995} +} + +@Article{ bernardi-pironneau-91, + Author = {Bernardi, C. and Pironneau, O.}, + Journal = {Comm. Partial Differential Equations}, + Number = {1}, + Pages = {59--104}, + Title = {On the shallow water equations at low {R}eynolds number}, + Volume = {16}, + Year = {1991} +} + +###Article{ bernardi-pironneau-91, + Author = {Bernardi, C. and Pironneau, O.}, + Journal = {Comm. Partial Differential Equations}, + Number = {1}, + Pages = {59--104}, + Title = {On the shallow water equations at low {R}eynolds number}, + Volume = {16}, + Year = {1991} +} + +@Book{ bernstein2004mripulseseq, + Title = {Handbook of {MRI} Pulse Sequences}, + Author = {Bernstein, Matt A. and King, Kevin F. and Zhou, Xiaohong + Joe}, + Publisher = {Elsevier}, + Year = {2004}, + Abstract = {Magnetic Resonance Imaging (MRI) is among the most + important medical imaging techniques available today. There + is an installed base of approximately 15,000 MRI scanners + worldwide. Each of these scanners is capable of running + many different "pulse sequences", which are governed by + physics and engineering principles, and implemented by + software programs that control the MRI hardware. To utilize + an MRI scanner to the fullest extent, a conceptual + understanding of its pulse sequences is crucial. This book + offers a complete guide that can help the scientists, + engineers, clinicians, and technologists in the field of + MRI understand and better employ their + scanner.\ensuremath{\cdot}Explains pulse sequences, their + components, and the associated image reconstruction methods + commonly used in MRI\ensuremath{\cdot}Provides + self-contained sections for individual + techniques\ensuremath{\cdot}Can be used as a quick + reference guide or as a resource for deeper + study\ensuremath{\cdot}Includes both non-mathematical and + mathematical descriptions \ensuremath{\cdot}Contains + numerous figures, tables, references, and worked example problems}, + ISBN = {9780080533124}, + Language = {en}, + owner = {david}, + timestamp = {2015-05-27 21:31:22} +} + +@Article{ bersi2016novel, + Title = {Novel methodology for characterizing regional variations + in the material properties of murine aortas}, + Author = {Bersi, Matthew R and Bellini, Chiara and Di Achille, Paolo + and Humphrey, Jay D and Genovese, Katia and Avril, + St{\'e}phane}, + Journal = {Journal of biomechanical engineering}, + Volume = {138}, + Number = {7}, + Pages = {071005}, + Year = {2016}, + Publisher = {American Society of Mechanical Engineers} +} + +@Article{ bersi2018local, + Title = {Local variations in material and structural properties + characterize murine thoracic aortic aneurysm mechanics}, + Author = {Bersi, Matthew R and Bellini, Chiara and Humphrey, Jay D + and Avril, St{\'e}phane}, + Journal = {Biomechanics and modeling in mechanobiology}, + Pages = {1--16}, + Year = {2018}, + Publisher = {Springer} +} + +@InCollection{ bertagna_data_2014, + langid = {english}, + Location = {{Basel}}, + Title = {Data {{Assimilation}} in {{Cardiovascular + Fluid}}--{{Structure Interaction Problems}}: {{An + Introduction}}}, + ISBN = {978-3-0348-0822-4}, + URL = {https://doi.org/10.1007/978-3-0348-0822-4_6}, + ShortTitle = {Data {{Assimilation}} in {{Cardiovascular + Fluid}}--{{Structure Interaction Problems}}}, + Abstract = {Numerical methods for incompressible fluid dynamics have + recently received a strong impulse from the applications to + the cardiovascular system. In particular, fluid--structure + interaction methods have been extensively investigated in + view of an accurate and possibly fast simulation of blood + flow in arteries and veins. This has been strongly + motivated by the progressive interest in using numerical + tools not only for understanding the general physiology and + pathology of the vascular system. The opportunity offered + by medical images properly preprocessed and elaborated to + simulate blood flow in real patients highlighted the + potential impact of scientific computing on the clinical + practice. Therefore, in silico experiments are currently + extensively used in bioengineering for completing (and + sometimes driving) more traditional in vivo and in vitro + investigations. Parallel to the development of numerical + models, the need for quantitative analysis for diagnostic + purposes has strongly stimulated the design of new methods + and instruments for measurements and imaging. Thanks to + these developments, a huge amount of data is nowadays + available. Data Assimilation is the accurate merging of + measures (including images) and numerical simulations for a + mathematically sound integration of different sources of + information. The outcome of this process includes both the + patient-specific measures and the general principles + underlying the development of mathematical models. In this + way, simulations are adapted to the availability of + individual data and are therefore supposed to be more + reliable; measures are correspondingly filtered by the + mathematical models assumed to describe the underlying + phenomena, resulting in a (hopefully) significant reduction + of the noise.This chapter provides an introduction to + methods for data assimilation, mostly developed in fields + like meteorology, applied to computational hemodynamics. We + focus mainly on two of them: methods based on stochastic + arguments (Kalman filtering) and variational methods. We + also address some examples that have been approached with + different techniques, in particular the estimation of + vascular compliance from displacement measures.}, + BookTitle = {Fluid-{{Structure Interaction}} and {{Biomedical + Applications}}}, + Series = {Advances in {{Mathematical Fluid Mechanics}}}, + Publisher = {{Springer Basel}}, + URLDate = {2019-02-20}, + Year = {2014}, + Pages = {395-481}, + Author = {Bertagna, Luca and D'Elia, Marta and Perego, Mauro and + Veneziani, Alessandro}, + Editor = {Bodnár, Tomáš and Galdi, Giovanni P. and Nečasová, Šárka}, + DOI = {10.1007/978-3-0348-0822-4_6} +} + +@Article{ bertoglio-etal-observers-12, + Author = {Bertoglio, C. and Chapelle, D. and Fern\'andez, M. and + Gerbeau, JF. and Moireau, P.}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Title = {State observers of a vascular fluid–structure + interaction model through measurements in the solid}, + Year = {2013}, + Volume = {256}, + Pages = {149--168} +} + +@Article{ bertoglio-etal-observersfsi-12, + Author = {Bertoglio, C. and Chapelle, D. and Fern\'andez, M.A. and + Gerbeau, J-F. and Moireau, P.}, + date-modified = {2012-05-01 12:52:26 +0000}, + Journal = cmame, + Title = {{State observers of a vascular fluid-structure interaction + model through measurements in the solid}}, + Year = {2012}, + Note = {To appear} +} + +###Article{ bertoglio-etal-observersfsi-12, + Author = {Bertoglio, C. and Chapelle, D. and Fern\'andez, M.A. and + Gerbeau, J-F. and Moireau, P.}, + date-modified = {2012-05-01 12:52:26 +0000}, + Journal = cmame, + Title = {{State observers of a vascular fluid-structure interaction + model through measurements in the solid}}, + Year = {2012}, + Note = {To appear} +} + +@InProceedings{ bertoglio-fernandez-gerbeau-moireau-09, + Author = {Bertoglio, C. and Fern\'andez, M.A. and Gerbeau, J-F. and + Moireau, Ph. }, + Title = {Filtering-based data assimilation in fluid-structure + interaction: towards personalization of vascular models }, + BookTitle = {1st International Conference on Mathematical and + Computational Biomedical Engineering - CMBE}, + Year = 2009, + Editor = {P.Nithiarasu and R.L\"ohner} +} + +###InProceedings{ bertoglio-fernandez-gerbeau-moireau-09, + Author = {Bertoglio, C. and Fern\'andez, M.A. and Gerbeau, J-F. and + Moireau, Ph. }, + Title = {Filtering-based data assimilation in fluid-structure + interaction: towards personalization of vascular models }, + BookTitle = {1st International Conference on Mathematical and + Computational Biomedical Engineering - CMBE}, + Year = 2009, + Editor = {P.Nithiarasu and R.L\"ohner} +} + +@Article{ bertoglio-moireau-gerbeau-11, + Author = "Bertoglio, C. and Moireau, P. and Gerbeau, J.-F.", + Title = "{Sequential parameter estimation for fluid-structure + problems. Application to hemodynamics}", + Journal = "Int. J. Num. Meth. Biomed. Engn", + Volume = 0, + Pages = "00-00", + Year = "2011" +} + +###Article{ bertoglio-moireau-gerbeau-11, + Author = "Bertoglio, C. and Moireau, P. and Gerbeau, J.-F.", + Title = "{Sequential parameter estimation for fluid-structure + problems. Application to hemodynamics}", + Journal = "Int. J. Num. Meth. Biomed. Engn", + Volume = 0, + Pages = "00-00", + Year = "2011" +} + +@Article{ bertoglio2012ijnmbe, + Title = {Sequential parameter estimation in fluid-structure + problems. Application to hemodynamics}, + Author = {Bertoglio, C. and Moireau, P. and Gerbeau, JF.}, + Journal = {International Journal for Numerical Methods in Biomedical + Engineering}, + Year = {2012}, + Pages = {434--455}, + Volume = {28}, + bdsk-url-1 = {http://dx.doi.org/0.1002/cnm.1476}, + date-modified = {2012-05-01 13:06:30 +0000}, + DOI = {0.1002/cnm.1476}, + Issue = {4}, + Keywords = {FSI, inverse problems, Kalman Filter} +} + +@Article{ bertoglio2013cmame, + Title = {State observers of a vascular fluid-structure interaction + model through measurements in the solid}, + Author = {Bertoglio, C. and Chapelle, D. and Fern\'andez, M.A. and + Gerbeau, J-F. and Moireau, P.}, + Journal = {Computational Methods in Applied Mechanics and + Engineering}, + Year = {2013}, + Note = {To appear}, + date-modified = {2012-05-01 12:52:26 +0000}, + Keywords = {FSI, luenberger observer} +} + +@Article{ bertoglio2013sisc, + Title = {Fractional-step schemes for the coupling of distributed + and lumped models in hemodynamics}, + Author = {Bertoglio, C. and Caiazzo, A. and Fern\'andez, M.A.}, + Journal = {SIAM Journal of Scientific Computing}, + Year = {2013}, + Number = {3}, + Pages = {B551-B575}, + Volume = {35}, + date-modified = {2012-05-01 13:06:38 +0000}, + DOI = {10.1137/120874412}, + Keywords = {windkessel, projection method, Navier-Stokes} +} + +@Article{ bertoglio2014jbmech, + Title = {Identification of artery wall stiffness: in vitro + validation and in vivo results of a data assimilation + procedure applied to a 3D fluid-structure interaction + model}, + Author = {Bertoglio, C. and Barber, D. and Gaddum, N. and Valverde, + I. and Rutten, M. and Beerbaum, P. and Moireau, P. and + Hose, R. and Gerbeau, JF.}, + Journal = {Journal of Biomechanics}, + Year = {2014}, + Number = {5}, + Pages = {1027--1034}, + Volume = {47}, + date-modified = {2012-05-01 13:07:00 +0000}, + DOI = {10.1016/j.jbiomech.2013.12.029}, + ISSN = {0021-9290}, + Keywords = {FSI, inverse problems}, + URL = {http://dx.doi.org/10.1016/j.jbiomech.2013.12.029} +} + +@Article{ bertoglio2014tangential, + Title = {A tangential regularization method for backflow + stabilization in hemodynamics}, + Author = {Bertoglio, Crist{\'o}bal and Caiazzo, Alfonso}, + Journal = {Journal of Computational Physics}, + Volume = {261}, + Pages = {162--171}, + Year = {2014}, + Publisher = {Academic Press} +} + +@Article{ bertoglio2016stab, + Title = {A Stokes-residual backflow stabilization method applied to + physiological flows}, + Author = {Bertoglio, Crist{\'o}bal and Caiazzo, Alfonso}, + Journal = {Journal of Computational Physics}, + Volume = {313}, + Pages = {260--278}, + Year = {2016}, + Publisher = {Elsevier} +} + +@Article{ bertoglio2016stokes, + Title = {A {S}tokes-residual backflow stabilization method applied + to physiological flows}, + Author = {Bertoglio, Crist{\'o}bal and Caiazzo, Alfonso}, + Journal = {Journal of Computational Physics}, + Volume = {313}, + Pages = {260--278}, + Year = {2016}, + Publisher = {Elsevier} +} + +###Article{ bertoglio2016stokes, + Title = {A {S}tokes-residual backflow stabilization method applied + to physiological flows}, + Author = {Bertoglio, Crist{\'o}bal and Caiazzo, Alfonso}, + Journal = {Journal of Computational Physics}, + Volume = {313}, + Pages = {260--278}, + Year = {2016}, + Publisher = {Elsevier} +} + +@Article{ bertoglio_benchmark_2017, + Title = {Benchmark Problems for Numerical Treatment of Backflow at + Open Boundaries}, + Volume = {34}, + ISSN = {2040-7939}, + URL = {https://onlinelibrary.wiley.com/doi/full/10.1002/cnm.2918}, + DOI = {10.1002/cnm.2918}, + Abstract = {Abstract In computational fluid dynamics, incoming + velocity at open boundaries, or backflow, often yields + unphysical instabilities already for moderate Reynolds + numbers. Several treatments to overcome these backflow + instabilities have been proposed in the literature. + However, these approaches have not yet been compared in + detail in terms of accuracy in different physiological + regimes, in particular because of the difficulty to + generate stable reference solutions apart from analytical + forms. In this work, we present a set of benchmark problems + in order to compare different methods in different backflow + regimes (with a full reversal flow and with propagating + vortices after a stenosis). The examples are implemented in + FreeFem++, and the source code is openly available, making + them a solid basis for future method developments.}, + Number = {2}, + JournalTitle = {International Journal for Numerical Methods in Biomedical + Engineering}, + ShortJournal = {International Journal for Numerical Methods in Biomedical + Engineering}, + URLDate = {2018-12-12}, + Date = {2017-07-25}, + Pages = {e2918}, + Author = {Bertoglio, Cristóbal and Caiazzo, Alfonso and Bazilevs, + Yuri and Braack, Malte and Esmaily, Mahdi and Gravemeier, + Volker and L. Marsden, Alison and Pironneau, Olivier and E. + Vignon-Clementel, Irene and A. Wall, Wolfgang} +} + +@article{funamoto2013pressure, + title={Reproduction of pressure field in ultrasonic-measurement-integrated simulation of blood flow}, + author={Funamoto, Kenichi and Hayase, Toshiyuki}, + journal={International journal for numerical methods in biomedical engineering}, + volume={29}, + number={7}, + pages={726--740}, + year={2013}, + publisher={Wiley Online Library} +} + +@article{adib2017minimizing, + title={Minimizing the blood velocity differences between phase-contrast magnetic resonance imaging and computational fluid dynamics simulation in cerebral arteries and aneurysms}, + author={Adib, Mohd Azrul Hisham Mohd and Ii, Satoshi and Watanabe, Yoshiyuki and Wada, Shigeo}, + journal={Medical \& biological engineering \& computing}, + volume={55}, + number={9}, + pages={1605--1619}, + year={2017}, + publisher={Springer} +} + +@PhdThesis{ bertoglio_forward_2012, + Title = {Forward and {{Inverse Problems}} in {{Fluid}}-{{Structure + Interaction}}. {{Application}} to {{Hemodynamics}}}, + URL = {https://tel.archives-ouvertes.fr/tel-00768188/document}, + Abstract = {In this thesis we deal with the simulation of + fluid-structure interac- tion (FSI) problems in + hemodynamics, with the emphasis in data assimilation and + simulation in physiological regimes. The first part + presents and analyzes a semi-implicit coupling scheme + between the three-dimensional Navier-Stokes equations (NSE) + and lumped parameter models, when the NSE are solved in a + projection framework. This allows to simulate fluid and FSI + problems more robustly, i.e., avoiding instabilities that + may occur when dealing with realistic test-cases. The + second part of the work is devoted to the study of + sequential data assimila- tion techniques in FSI. We first + present a study about the application of a reduced- order + Unscented Kalman Filter for the effective estimation of + relevant physical pa- rameters, like the stiffness + distribution of the vessel wall and the proximal resistance + in the fluid, from displacement measurements at the + fluid-structure interface. Next, we analyze some Luenberger + observers from solid mechanics in FSI, with the aim to + construct tractable state estimators for large-scale FSI + problems. In the third and final part, we apply some of the + aforementioned methodologies to real physical problems. + First, we perform the estimation of the wall stiffness (for + linear and non-linear solid models) from data coming from + MR-images of a silicone rubber aortic phantom. To finish, + we deal with the forward analysis of a real aorta with + repaired coarctation and we test the estimation techniques + with synthetic data and show some results with the + patient's data.}, + Institution = {{Université Pierre et Marie Curie - Paris VI}}, + URLDate = {2016-04-01}, + Date = {2012-11-23}, + Author = {Bertoglio, Cristobal} +} + +@Article{ bertoglio_fractional-step_2013, + Title = {Fractional-Step Schemes for the Coupling of Distributed + and Lumped Models in Hemodynamics}, + Volume = {35}, + Number = {3}, + JournalTitle = {SIAM Journal on Scientific Computing}, + Date = {2013}, + Pages = {B551-B575}, + Author = {Bertoglio, Cristóbal and Caiazzo, Alfonso and Fernández, + Miguel A}, + Publisher = {{SIAM}} +} + +@Article{ bertoglio_identification_2014, + Title = {Identification of Artery Wall Stiffness: {{In}} Vitro + Validation and in Vivo Results of a Data Assimilation + Procedure Applied to a {{3D}} Fluid-Structure Interaction + Model}, + Volume = {47}, + URL = {http://www.sciencedirect.com/science/article/pii/S0021929014000098}, + ShortTitle = {Identification of Artery Wall Stiffness}, + Number = {5}, + JournalTitle = {Journal of biomechanics}, + URLDate = {2016-11-21}, + Year = {2014}, + Pages = {1027--1034}, + Author = {Bertoglio, Cristobal and Barber, David and Gaddum, + Nicholas and Valverde, Israel and Rutten, Marcel and + Beerbaum, Philipp and Moireau, Philippe and Hose, Rodney + and Gerbeau, Jean-Frederic} +} + +@Article{ bertoglio_relative_2018, + Title = {Relative Pressure Estimation from Velocity Measurements in + Blood Flows: {{State}}-of-the-Art and New Approaches}, + ShortTitle = {Relative Pressure Estimation from Velocity Measurements in + Blood Flows}, + Author = {Bertoglio, Crist{\'o}bal and Nu{\~n}ez, Rodolfo and + Galarce, Felipe and Nordsletten, David and Osses, Axel}, + Year = {2018}, + Month = feb, + Volume = {34}, + Pages = {e2925}, + ISSN = {20407939}, + DOI = {10.1002/cnm.2925}, + Journal = {IJNMBE}, + Language = {en}, + Number = {2} +} + +###Article{ bertoglio_relative_2018, + langid = {english}, + Title = {Relative Pressure Estimation from Velocity Measurements in + Blood Flows: {{State}}-of-the-Art and New Approaches: + {{Relative}} Pressure Estimation}, + Volume = {34}, + ISSN = {20407939}, + URL = {http://doi.wiley.com/10.1002/cnm.2925}, + DOI = {10.1002/cnm.2925}, + ShortTitle = {Relative Pressure Estimation from Velocity Measurements in + Blood Flows}, + Number = {2}, + JournalTitle = {International Journal for Numerical Methods in Biomedical + Engineering}, + URLDate = {2018-12-10}, + Date = {2018-02}, + Pages = {e2925}, + Author = {Bertoglio, Cristóbal and Nuñez, Rodolfo and Galarce, + Felipe and Nordsletten, David and Osses, Axel} +} + +###Article{ bertoglio_relative_2018, + Title = {Relative pressure estimation from velocity measurements in + blood flows: State-of-the-art and new approaches}, + Author = {Bertoglio, Crist{\'o}bal and N{\'u}nez, Rodolfo and + Galarce, Felipe and Nordsletten, David and Osses, Axel}, + Journal = {International journal for numerical methods in biomedical + engineering}, + Volume = {34}, + Number = {2}, + Pages = {e2925}, + Year = {2018}, + Publisher = {Wiley Online Library} +} + +@Article{ bertoglio_sequential_2012, + Title = {Sequential Parameter Estimation for Fluid-Structure + Problems: {{Application}} to Hemodynamics}, + Volume = {28}, + ShortTitle = {Sequential Parameter Estimation for Fluid–Structure + Problems}, + Number = {4}, + JournalTitle = {International Journal for Numerical Methods in Biomedical + Engineering}, + Year = {2012}, + Pages = {434--455}, + Author = {Bertoglio, Crist\'obal and Moireau, Philippe and Gerbeau, + Jean-Frederic} +} + +@Article{ bertoglio_state_2013, + Title = {State Observers of a Vascular Fluid-Structure Interaction + Model through Measurements in the Solid}, + Volume = {256}, + JournalTitle = {Computer Methods in Applied Mechanics and Engineering}, + Year = {2013}, + Pages = {149--168}, + Author = {Bertoglio, Cristobal and Chapelle, Dominique and + Fernández, Miguel Angel and Gerbeau, J.-F. and Moireau, + Philippe} +} + +@Article{ bertoglio_stokes-residual_2016, + Title = {A {{Stokes}}-Residual Backflow Stabilization Method + Applied to Physiological Flows}, + Volume = {313}, + ISSN = {0021-9991}, + URL = {http://www.sciencedirect.com/science/article/pii/S0021999116001157}, + DOI = {10.1016/j.jcp.2016.02.045}, + Abstract = {In computational fluid dynamics, the presence of incoming + flow at open boundaries (backflow) might often yield + unphysical oscillations and instabilities issues, even for + moderate Reynolds numbers. It is widely accepted that this + problem is caused by the incoming convective energy at the + open boundary, which cannot be controlled a priori when the + velocity at the boundary is unknown. In this work, we + propose a stabilized finite element formulation for the + incompressible Navier–Stokes equations, in which the + stabilization term is based on the residual of a weak + Stokes problem normal to the open boundary, driven by an + approximated boundary pressure gradient. In particular, the + viscous term introduces additional dissipation which + controls the incoming convective energy. This method has + the advantage as it does not require modifications or + extensions of the computational domain. Moreover, it does + not require a priori assumptions on the shape of the + boundary velocity field. We illustrate our approach through + several numerical examples relevant to blood and + respiratory flows, including Womersley flows and realistic + geometries coming from medical imaging. The performance of + the simulations is compared to recently reported + approaches.}, + JournalTitle = {Journal of Computational Physics}, + ShortJournal = {Journal of Computational Physics}, + URLDate = {2016-11-15}, + Date = {2016-05-15}, + Pages = {260-278}, + Author = {Bertoglio, Cristóbal and Caiazzo, Alfonso} +} + +@Article{ bertoglio_tangential_2014, + Title = {A Tangential Regularization Method for Backflow + Stabilization in Hemodynamics}, + Volume = {261}, + JournalTitle = {Journal of Computational Physics}, + Date = {2014}, + Pages = {162-171}, + Author = {Bertoglio, Cristóbal and Caiazzo, Alfonso}, + Publisher = {{Academic Press}} +} + +@Book{ berton-91, + Annote = {mhd}, + Author = {Berton, R.}, + code = {mhd 29}, + Publisher = {Masson}, + Title = {Magn{\'e}tohydrodynamique}, + Year = {1991} +} + +###Book{ berton-91, + Annote = {mhd}, + Author = {Berton, R.}, + code = {mhd 29}, + Publisher = {Masson}, + Title = {Magn{\'e}tohydrodynamique}, + Year = {1991} +} + +@Article{ besson-bourgeois-chevalier-rappaz-touzani-89, + Annote = {mhd, casting}, + Author = {Bourgeois, J. and Chevalier, P.-A. and Picasso, M. and + Rappaz, J. and Touzani, R.}, + code = {mhd14}, + Journal = {Jour. Comp. Phys.}, + Number = {2}, + Pages = {482-507}, + Title = {Numerical modelling of electromagnetic casting processes}, + Volume = {92}, + Year = {1989} +} + +###Article{ besson-bourgeois-chevalier-rappaz-touzani-89, + Annote = {mhd, casting}, + Author = {Bourgeois, J. and Chevalier, P.-A. and Picasso, M. and + Rappaz, J. and Touzani, R.}, + code = {mhd14}, + Journal = {Jour. Comp. Phys.}, + Number = {2}, + Pages = {482-507}, + Title = {Numerical modelling of electromagnetic casting processes}, + Volume = {92}, + Year = {1989} +} + +@InProceedings{ bestel2001biomechanical, + Title = {A biomechanical model of muscle contraction}, + Author = {Bestel, Julie and Cl{\'e}ment, Fr{\'e}d{\'e}rique and + Sorine, Michel}, + BookTitle = {International Conference on Medical Image Computing and + Computer-Assisted Intervention}, + Pages = {1159--1161}, + Year = {2001}, + Organization = {Springer} +} + +@InProceedings{ bestel2001miccai, + Title = {A biomechanical model of muscle contraction}, + Author = {Bestel, Julie and Cl{\'e}ment, Fr{\'e}d{\'e}rique and + Sorine, Michel}, + BookTitle = {Medical Image Computing and Computer-Assisted + Intervention--MICCAI 2001}, + Pages = {1159--1161}, + Year = {2001}, + Organization = {Springer} +} + +@Article{ bevan2016comparative, + Title = {A comparative study of fractional step method in its + quasi-implicit, semi-implicit and fully-explicit forms for + incompressible flows}, + Author = {Bevan, Rhodri LT and Boileau, Etienne and van Loon, Raoul + and Lewis, Roland W and Nithiarasu, Perumal and Lewis, RW + and Lewis, RW}, + Journal = {International Journal of Numerical Methods for Heat \& + Fluid Flow}, + Volume = {26}, + Number = {3/4}, + Year = {2016}, + Publisher = {Emerald Group Publishing Limited} +} + +@Article{ bh07, + Author = {Burman, E. and Hansbo, P.}, + Journal = {J. Comput. Appl. Math.}, + Pages = {35-51}, + Title = {A unified stabilized method for {S}tokes' and {D}arcy's + equations}, + Volume = {198}, + Year = { 2007} +} + +###Article{ bh07, + Author = {Burman, E. and Hansbo, P.}, + Journal = {J. Comput. Appl. Math.}, + Pages = {35-51}, + Title = {A unified stabilized method for {S}tokes' and {D}arcy's + equations}, + Volume = {198}, + Year = { 2007} +} + +@Article{ bibriv0, + Author = {M.C. Rivara}, + Journal = { Commn. App. Numer. Methods}, + Pages = {281--290}, + Title = {A {3-D Refinement Algorithm Suitable for Adaptive and + Multi-Grid Techniques}}, + Volume = {8}, + Year = {1992} +} + +###Article{ bibriv0, + Author = {M.C. Rivara}, + Journal = { Commn. App. Numer. Methods}, + Pages = {281--290}, + Title = {A {3-D Refinement Algorithm Suitable for Adaptive and + Multi-Grid Techniques}}, + Volume = {8}, + Year = {1992} +} + +@Article{ biehler2015towards, + Title = {Towards efficient uncertainty quantification in complex + and large-scale biomechanical problems based on a Bayesian + multi-fidelity scheme}, + Author = {Biehler, Jonas and Gee, Michael W and Wall, Wolfgang A}, + Journal = {Biomechanics and modeling in mechanobiology}, + Volume = {14}, + Number = {3}, + Pages = {489--513}, + Year = {2015}, + Publisher = {Springer} +} + +@InProceedings{ billet-sermesant-delingette-ayache-08, + Author = {Billet, F. and Sermesant,M. and Delingette, H. and Ayache, + N.}, + BookTitle = {Proc. of the Workshop on Computational Biomechanics for + Medicine III. (Workshop MICCAI-2008)}, + date-added = {2009-03-10 12:20:33 -0700}, + date-modified = {2009-03-10 12:22:13 -0700}, + Editor = {K. Miller and P.M.F. Nielsen}, + Month = {September}, + Title = {Cardiac Motion Recovery by Coupling an Electromechanical + Model and Cine-{MRI} Data: First Steps}, + Year = 2008 +} + +###InProceedings{ billet-sermesant-delingette-ayache-08, + Author = {Billet, F. and Sermesant,M. and Delingette, H. and Ayache, + N.}, + BookTitle = {Proc. of the Workshop on Computational Biomechanics for + Medicine III. (Workshop MICCAI-2008)}, + date-added = {2009-03-10 12:20:33 -0700}, + date-modified = {2009-03-10 12:22:13 -0700}, + Editor = {K. Miller and P.M.F. Nielsen}, + Month = {September}, + Title = {Cardiac Motion Recovery by Coupling an Electromechanical + Model and Cine-{MRI} Data: First Steps}, + Year = 2008 +} + +@InProceedings{ billet2008miccai, + Title = {Cardiac Motion Recovery by Coupling an Electromechanical + Model and Cine-{MRI} Data: First Steps}, + Author = {Billet, F. and Sermesant,M. and Delingette, H. and Ayache, + N.}, + BookTitle = {Proc. of the Workshop on Computational Biomechanics for + Medicine III. (Workshop MICCAI-2008)}, + Year = {2008}, + Editor = {K. Miller and P.M.F. Nielsen}, + Month = {September}, + date-added = {2009-03-10 12:20:33 -0700}, + date-modified = {2009-03-10 12:22:13 -0700}, + Keywords = {CRT, motion} +} + +@Collection{ bird_dynamics_1987, + Location = {{New York}}, + Title = {Dynamics of Polymeric Liquids}, + Edition = {2nd ed}, + ISBN = {978-0-471-80245-7 978-0-471-80244-0}, + PageTotal = {2}, + Publisher = {{Wiley}}, + Year = {1987}, + Editor = {Bird, R. Byron} +} + +@Article{ birks2006nejm, + Title = {Left Ventricular Assist Device and Drug Therapy for the + Reversal of Heart Failure}, + Author = {Birks, Emma J. and Tansley, Patrick D. and Hardy, James + and George, Robert S. and Bowles, Christopher T. and Burke, + Margaret and Banner, Nicholas R. and Khaghani, Asghar and + Yacoub, Magdi H.}, + Journal = {New England Journal of Medicine}, + Year = {2006}, + Note = {PMID: 17079761}, + Number = {18}, + Pages = {1873-1884}, + Volume = {355}, + DOI = {10.1056/NEJMoa053063}, + EPrint = {http://dx.doi.org/10.1056/NEJMoa053063}, + File = {birks06.pdf:birks06.pdf:PDF}, + timestamp = {2015/09/14}, + URL = {http://dx.doi.org/10.1056/NEJMoa053063} +} + +@Article{ bishop2010, + Author = {Bishop, Martin J. and Plank, Gernot and Burton, Rebecca A. + B. and Schneider, Jürgen E. and Gavaghan, David J. and + Grau, Vicente and Kohl, Peter}, + Title = {Development of an anatomically detailed MRI-derived rabbit + ventricular model and assessment of its impact on + simulations of electrophysiological function}, + Volume = {298}, + Number = {2}, + Pages = {H699-H718}, + Year = {February 2010}, + DOI = {10.1152/ajpheart.00606.2009}, + Journal = {American Journal of Physiology - Heart and Circulatory + Physiology} +} + +@Article{ bjorstad-widlund-86, + Author = {Bjorstad, P.E. and Widlund, O.B.}, + Journal = {SIAM J. Numer. Anal.}, + Number = {23}, + Pages = {1097--1120}, + Title = {Iterative methods for the solution of elliptic problems on + regions partitioned in subdomains}, + Volume = {31}, + Year = {1986} +} + +###Article{ bjorstad-widlund-86, + Author = {Bjorstad, P.E. and Widlund, O.B.}, + Journal = {SIAM J. Numer. Anal.}, + Number = {23}, + Pages = {1097--1120}, + Title = {Iterative methods for the solution of elliptic problems on + regions partitioned in subdomains}, + Volume = {31}, + Year = {1986} +} + +@Article{ blanc-entner-80, + Author = {Blanc, J.M. and Entner, P.}, + Journal = {AIME}, + Pages = {285-295}, + Title = {Application of computer calculations to improve + electromagnetic behaviour of pots}, + Year = {1980} +} + +###Article{ blanc-entner-80, + Author = {Blanc, J.M. and Entner, P.}, + Journal = {AIME}, + Pages = {285-295}, + Title = {Application of computer calculations to improve + electromagnetic behaviour of pots}, + Year = {1980} +} + +@Article{ blancher-creff-gagneux-01, + Author = {Blancher, S. and Creff, R. and Gagneux, G. and Lacabanne, + B. and Montel, F. and Trujillo, D.}, + code = {por14}, + Journal = {M2AN Math. Model. Numer. Anal.}, + Number = {3}, + Pages = {481--512}, + Title = {Multicomponent flow in a porous medium. {A}dsorption and + soret effect phenomena: local study and upscaling process}, + Volume = {35}, + Year = {2001} +} + +###Article{ blancher-creff-gagneux-01, + Author = {Blancher, S. and Creff, R. and Gagneux, G. and Lacabanne, + B. and Montel, F. and Trujillo, D.}, + code = {por14}, + Journal = {M2AN Math. Model. Numer. Anal.}, + Number = {3}, + Pages = {481--512}, + Title = {Multicomponent flow in a porous medium. {A}dsorption and + soret effect phenomena: local study and upscaling process}, + Volume = {35}, + Year = {2001} +} + +@Article{ bloch1946physrev, + Title = {Nuclear Induction}, + Author = {Bloch, F.}, + Journal = {Physical Review}, + Year = {1946}, + Number = {7-8}, + Pages = {460--474}, + Volume = {70}, + Abstract = {The magnetic moments of nuclei in normal matter will + result in a nuclear paramagnetic polarization upon + establishment of equilibrium in a constant magnetic field. + It is shown that a radiofrequency field at right angles to + the constant field causes a forced precession of the total + polarization around the constant field with decreasing + latitude as the Larmor frequency approaches adiabatically + the frequency of the r-f field. Thus there results a + component of the nuclear polarization at right angles to + both the constant and the r-f field and it is shown that + under normal laboratory conditions this component can + induce observable voltages. In Section 3 we discuss this + nuclear induction, considering the effect of external + fields only, while in Section 4 those modifications are + described which originate from internal fields and finite + relaxation times.}, + DOI = {10.1103/PhysRev.70.460}, + owner = {david}, + timestamp = {2015-05-05 19:49:42}, + URL = {http://link.aps.org/doi/10.1103/PhysRev.70.460}, + URLDate = {2015-05-05} +} + +@InCollection{ blum-ledimet-navon-08, + Author = {Blum, J. and Le Dimet, F. X. and Navon, I. M.}, + BookTitle = {Handbook of Numerical Analysis: Computational Methods for + the Atmosphere and the Oceans}, + date-added = {2009-03-10 11:40:58 -0700}, + date-modified = {2009-03-10 12:02:08 -0700}, + Editor = {Temam, R. and Tribbia, J.}, + Publisher = {Elsevier}, + Title = {Data assimilation for geophysical fluids}, + Year = {2008} +} + +###InCollection{ blum-ledimet-navon-08, + Author = {Blum, J. and Le Dimet, F. X. and Navon, I. M.}, + BookTitle = {Handbook of Numerical Analysis: Computational Methods for + the Atmosphere and the Oceans}, + date-added = {2009-03-10 11:40:58 -0700}, + date-modified = {2009-03-10 12:02:08 -0700}, + Editor = {Temam, R. and Tribbia, J.}, + Publisher = {Elsevier}, + Title = {Data assimilation for geophysical fluids}, + Year = {2008} +} + +@Article{ blum-verron-98, + Author = {Luong, Bruno and Blum, Jacques and Verron, Jacques}, + Title = {A variational method for the resolution of a data + assimilation problem in oceanography}, + Journal = {Inverse Problems}, + Volume = {14}, + Year = {1998}, + Number = {4}, + Pages = {979--997} +} + +###Article{ blum-verron-98, + Author = {Luong, Bruno and Blum, Jacques and Verron, Jacques}, + Title = {A variational method for the resolution of a data + assimilation problem in oceanography}, + Journal = {Inverse Problems}, + Volume = {14}, + Year = {1998}, + Number = {4}, + Pages = {979--997} +} + +@Article{ bock_4d_2010, + Title = {{{4D}} Phase Contrast {{MRI}} at 3 {{T}}: {{Effect}} of + Standard and Blood-Pool Contrast Agents on {{SNR}}, + {{PC}}-{{MRA}}, and Blood Flow Visualization}, + ShortTitle = {{{4D}} Phase Contrast {{MRI}} at 3 {{T}}}, + Author = {Bock, Jelena and Frydrychowicz, Alex and Stalder, + Aur{\'e}lien F. and Bley, Thorsten A. and Burkhardt, Hans + and Hennig, J{\"u}rgen and Markl, Michael}, + Year = {2010}, + Volume = {63}, + Pages = {330--338}, + Journal = {Magnetic Resonance in Medicine: An Official Journal of the + International Society for Magnetic Resonance in Medicine}, + Number = {2} +} + +@Article{ bock_vivo_2011, + Title = {In Vivo Noninvasive {{4D}} Pressure Difference Mapping in + the Human Aorta: {{Phantom}} Comparison and Application in + Healthy Volunteers and Patients}, + ShortTitle = {In Vivo Noninvasive {{4D}} Pressure Difference Mapping in + the Human Aorta}, + Author = {Bock, Jelena and Frydrychowicz, Alex and Lorenz, Ramona + and Hirtler, Daniel and Barker, Alex J. and Johnson, Kevin + M. and Arnold, Raoul and Burkhardt, Hans and Hennig, + Juergen and Markl, Michael}, + Year = {2011}, + Volume = {66}, + Pages = {1079--1088}, + ISSN = {1522-2594}, + DOI = {10.1002/mrm.22907}, + Abstract = {In this work, we present a systematic phantom comparison + and clinical application of noninvasive pressure difference + mapping in the human aorta based on time-resolved 3D phase + contrast data. Relative pressure differences were + calculated based on integration and iterative refinement of + pressure gradients derived from MR-based three-directional + velocity vector fields (flow-sensitive 4D MRI with + spatial/temporal resolution {$\sim$} 2.1 mm3/40 ms) using + the Navier-Stokes equation. After in vitro study using a + stenosis phantom, time-resolved 3D pressure gradients were + systematically evaluated in the thoracic aorta in a group + of 12 healthy subjects and 6 patients after repair for + aortic coarctation. Results from the phantom study showed + good agreement with expected values and standard methods + (Bernoulli). Data of healthy subjects showed good + intersubject consistency and good agreement with the + literature. In patients, pressure waveforms showed elevated + peak values. Pressure gradients across the stenosis were + compared with reference measurements from Doppler + ultrasound. The MRI findings demonstrated a significant + correlation (r = 0.96, P {$<$} 0.05) but moderate + underestimation (14.7\% {$\pm$} 15.5\%) compared with + ultrasound when the maximum pressure difference for all + possible paths connecting proximal and distal locations of + the stenosis were used. This study demonstrates the + potential of the applied approach to derive additional + quantitative information such as pressure gradients from + time-resolved 3D phase contrast MRI. Magn Reson Med, 2011. + \textcopyright{} 2011 Wiley-Liss, Inc.}, + Journal = {Magnetic Resonance in Medicine}, + Language = {en}, + Number = {4} +} + +###Article{ bock_vivo_2011, + langid = {english}, + Title = {In Vivo Noninvasive {{4D}} Pressure Difference Mapping in + the Human Aorta: {{Phantom}} Comparison and Application in + Healthy Volunteers and Patients}, + Volume = {66}, + ISSN = {1522-2594}, + URL = {https://onlinelibrary.wiley.com/doi/abs/10.1002/mrm.22907}, + DOI = {10.1002/mrm.22907}, + ShortTitle = {In Vivo Noninvasive {{4D}} Pressure Difference Mapping in + the Human Aorta}, + Abstract = {In this work, we present a systematic phantom comparison + and clinical application of noninvasive pressure difference + mapping in the human aorta based on time-resolved 3D phase + contrast data. Relative pressure differences were + calculated based on integration and iterative refinement of + pressure gradients derived from MR-based three-directional + velocity vector fields (flow-sensitive 4D MRI with + spatial/temporal resolution ∼ 2.1 mm3/40 ms) using the + Navier-Stokes equation. After in vitro study using a + stenosis phantom, time-resolved 3D pressure gradients were + systematically evaluated in the thoracic aorta in a group + of 12 healthy subjects and 6 patients after repair for + aortic coarctation. Results from the phantom study showed + good agreement with expected values and standard methods + (Bernoulli). Data of healthy subjects showed good + intersubject consistency and good agreement with the + literature. In patients, pressure waveforms showed elevated + peak values. Pressure gradients across the stenosis were + compared with reference measurements from Doppler + ultrasound. The MRI findings demonstrated a significant + correlation (r = 0.96, P {$<$} 0.05) but moderate + underestimation (14.7\% ± 15.5\%) compared with ultrasound + when the maximum pressure difference for all possible paths + connecting proximal and distal locations of the stenosis + were used. This study demonstrates the potential of the + applied approach to derive additional quantitative + information such as pressure gradients from time-resolved + 3D phase contrast MRI. Magn Reson Med, 2011. © 2011 + Wiley-Liss, Inc.}, + Number = {4}, + JournalTitle = {Magnetic Resonance in Medicine}, + URLDate = {2019-01-28}, + Year = {2011}, + Pages = {1079-1088}, + Author = {Bock, Jelena and Frydrychowicz, Alex and Lorenz, Ramona + and Hirtler, Daniel and Barker, Alex J. and Johnson, Kevin + M. and Arnold, Raoul and Burkhardt, Hans and Hennig, + Juergen and Markl, Michael} +} + +@Collection{ bodnar_fluid-structure_2014, + langid = {english}, + Location = {{Basel}}, + Title = {Fluid-{{Structure Interaction}} and {{Biomedical + Applications}}}, + ISBN = {978-3-0348-0821-7 978-3-0348-0822-4}, + URL = {http://link.springer.com/10.1007/978-3-0348-0822-4}, + Series = {Advances in {{Mathematical Fluid Mechanics}}}, + Publisher = {{Springer Basel}}, + URLDate = {2019-02-20}, + Year = {2014}, + Editor = {Bodnár, Tomáš and Galdi, Giovanni P. and Nečasová, + Šárka}, + DOI = {10.1007/978-3-0348-0822-4} +} + +@Article{ bolster-mills-hornberger-01, + Author = {Bolster, C.H. and Mills, A.L. and Hornberger, G. M. and + Herman, J.S.}, + code = {por17}, + Journal = {Journal of Contaminant Hydrology}, + Pages = {287-305}, + Title = {Effect of surface coatings, grain size, and ionic strength + on the maximum attainable coverage of bacteria on sand + surfaces}, + Volume = {50}, + Year = {2001} +} + +###Article{ bolster-mills-hornberger-01, + Author = {Bolster, C.H. and Mills, A.L. and Hornberger, G. M. and + Herman, J.S.}, + code = {por17}, + Journal = {Journal of Contaminant Hydrology}, + Pages = {287-305}, + Title = {Effect of surface coatings, grain size, and ionic strength + on the maximum attainable coverage of bacteria on sand + surfaces}, + Volume = {50}, + Year = {2001} +} + +@InCollection{ bonito2015modified, + Title = {Modified pressure-correction projection methods: Open + boundary and variable time stepping}, + Author = {Bonito, Andrea and Guermond, Jean-Luc and Lee, Sanghyun}, + BookTitle = {Numerical Mathematics and Advanced Applications-ENUMATH + 2013}, + Pages = {623--631}, + Year = {2015}, + Publisher = {Springer} +} + +@Article{ borchers-miyakawa-92, + Author = {Borchers, W. and Miyakawa, T.}, + Journal = {Arch. Rat. Mech. Anal}, + Pages = {273-295}, + Title = {{L$^2$}-decay for {Navier-Stokes} flows in unbounded + domains with application to exterior stationary flows}, + Volume = {118}, + Year = {1992} +} + +###Article{ borchers-miyakawa-92, + Author = {Borchers, W. and Miyakawa, T.}, + Journal = {Arch. Rat. Mech. Anal}, + Pages = {273-295}, + Title = {{L$^2$}-decay for {Navier-Stokes} flows in unbounded + domains with application to exterior stationary flows}, + Volume = {118}, + Year = {1992} +} + +@InProceedings{ boretti-89, + Author = {Boretti, A.}, + BookTitle = {Numerical combustion, Lecture notes in physics}, + Editor = {Dervieux, A. and Larrouturou, B.}, + Publisher = {Springer-Verlag, Heidelberg}, + Title = {An explicit {R}unge-{K}utta method for turbulent reactive + flow calculations}, + Volume = {351}, + Year = {1989} +} + +###InProceedings{ boretti-89, + Author = {Boretti, A.}, + BookTitle = {Numerical combustion, Lecture notes in physics}, + Editor = {Dervieux, A. and Larrouturou, B.}, + Publisher = {Springer-Verlag, Heidelberg}, + Title = {An explicit {R}unge-{K}utta method for turbulent reactive + flow calculations}, + Volume = {351}, + Year = {1989} +} + +@Article{ borouchaki-frey-97, + Author = {Borouchaki, H. and Frey, P.J.}, + Journal = {Int. J. Numer. Methods Eng.}, + Pages = {915-934}, + Title = {Adaptive triangular-quadrilateral mesh generation}, + Volume = {41}, + Year = {1997} +} + +###Article{ borouchaki-frey-97, + Author = {Borouchaki, H. and Frey, P.J.}, + Journal = {Int. J. Numer. Methods Eng.}, + Pages = {915-934}, + Title = {Adaptive triangular-quadrilateral mesh generation}, + Volume = {41}, + Year = {1997} +} + +@Book{ bossavit-93, + Author = {Bossavit, A.}, + Publisher = {Springer-{Verlag}}, + Title = {Electromagn{\'e}tisme en vue de la mod{\'e}lisation}, + Year = {1993} +} + +###Book{ bossavit-93, + Author = {Bossavit, A.}, + Publisher = {Springer-{Verlag}}, + Title = {Electromagn{\'e}tisme en vue de la mod{\'e}lisation}, + Year = {1993} +} + +@Book{ bossavit-emson-mayergoyz-91, + Author = {Bossavit, A. and Emson, C. and Mayergoyz, I.D.}, + Publisher = {Eyrolles}, + Title = {M{\'e}thodes num{\'e}riques en {\'e}lectromagn{\'e}tisme}, + Year = {1991} +} + +###Book{ bossavit-emson-mayergoyz-91, + Author = {Bossavit, A. and Emson, C. and Mayergoyz, I.D.}, + Publisher = {Eyrolles}, + Title = {M{\'e}thodes num{\'e}riques en {\'e}lectromagn{\'e}tisme}, + Year = {1991} +} + +@Article{ botker2012cr, + Title = {Measuring myocardial salvage.}, + Author = {B{\o}tker, Hans Erik and Kaltoft, Anne Kjer and Pedersen, + Steen Fjord and Kim, Won Yong}, + Journal = {Cardiovasc Res}, + Year = {2012}, + Month = {May}, + Number = {2}, + Pages = {266--275}, + Volume = {94}, + Abstract = {The efficacy of cardioprotective strategies can be + quantified by myocardial salvage as an indicator of + therapeutic benefit. Salvage is calculated as the + difference between the area at risk (AAR) and the final + infarct size (FIS). AAR has been quantified by angiographic + assessment followed by quantification of FIS by biochemical + ischaemic markers or imaging modalities such as + cardiovascular magnetic resonance (CMR). Angiographical + methods may overestimate AAR and since methodological + differences may exist between different modalities, the use + of different modalities for estimating AAR and FIS may not + be recommended. (99m)Technetium (Tc)-Sestamibi + single-photon emission tomography (SPECT) allows + quantification of AAR and FIS by tracer injection prior to + revascularization and after 1 month, respectively. SPECT + provides the most validated measure of myocardial salvage + and has been utilized in multiple randomized clinical + trials. However, SPECT is logistically challenging, + expensive, and includes radiation exposure. More recently, + a large number of studies have suggested that CMR can + determine salvage in a single examination by combining + measures of myocardial oedema in the AAR exposed to + ischaemia reperfusion with FIS quantification by late + gadolinium enhancement. The T1- and T2-weighted CMR + approaches for quantification of AAR utilize non-contrast, + early and late gadolinium enhancement techniques. The + technical progress, high spatial resolution and the + potential for retrospective quantification of the AAR makes + CMR the most appropriate technique for assessment of + myocardial salvage. However, the optimum CMR technique for + assessment of myocardial AAR remains to be defined. + Consequently, we recommend a comprehensive CMR protocol to + ensure reliable assessment of myocardial salvage.}, + DOI = {10.1093/cvr/cvs081}, + Institution = {Department of Cardiology, Aarhus University Hospital + Skejby, Aarhus N, Denmark. heb@dadlnet.dk}, + Keywords = {Humans; Magnetic Resonance Imaging, methods; Myocardial + Infarction, diagnosis/radiography/radionuclide imaging; + Myocardium, pathology; Risk Assessment; Technetium, + diagnostic use; Tomography, Emission-Computed, + Single-Photon, methods}, + Language = {eng}, + medline-pst = {ppublish}, + owner = {stoeckc}, + pii = {cvs081}, + pmid = {22311720}, + timestamp = {2015.07.24}, + URL = {http://dx.doi.org/10.1093/cvr/cvs081} +} + +@Article{ botnar-rappitsch-00, + Author = {Botnar, R. and Rappitsch, G. and Scheidegger, M.B. and + Liepsch, D. and Perktold, K. and Boesiger, P.}, + Journal = {J. Biomechanics}, + Pages = {137--144}, + Title = {Hemodynamics in the carotid artery bifurcation: A + comparison between numerical simulations and in-vitro + measurements}, + Volume = {33}, + Year = {2000} +} + +###Article{ botnar-rappitsch-00, + Author = {Botnar, R. and Rappitsch, G. and Scheidegger, M.B. and + Liepsch, D. and Perktold, K. and Boesiger, P.}, + Journal = {J. Biomechanics}, + Pages = {137--144}, + Title = {Hemodynamics in the carotid artery bifurcation: A + comparison between numerical simulations and in-vitro + measurements}, + Volume = {33}, + Year = {2000} +} + +@Article{ bouaou_analysis_2019, + langid = {english}, + Title = {Analysis of Aortic Pressure Fields from {{4D}} Flow + {{MRI}} in Healthy Volunteers: {{Associations}} with Age + and Left Ventricular Remodeling: {{4D Flow MRI Aortic + Pressure}} in {{Aging}}}, + ISSN = {10531807}, + URL = {http://doi.wiley.com/10.1002/jmri.26673}, + DOI = {10.1002/jmri.26673}, + ShortTitle = {Analysis of Aortic Pressure Fields from {{4D}} Flow + {{MRI}} in Healthy Volunteers}, + JournalTitle = {Journal of Magnetic Resonance Imaging}, + URLDate = {2019-02-27}, + Year = {2019-02-04}, + Author = {Bouaou, Kevin and Bargiotas, Ioannis and Dietenbeck, + Thomas and Bollache, Emilie and Soulat, Gilles and Craiem, + Damian and Houriez-Gombaud-Saintonge, Sophia and De Cesare, + Alain and Gencer, Umit and Giron, Alain and Redheuil, Alban + and Messas, Emmanuel and Lucor, Didier and Mousseaux, Elie + and Kachenoura, Nadjia} +} + +@Article{ boulakia-05, + Author = {Boulakia, M.}, + date-added = {2012-02-27 09:44:22 +0000}, + date-modified = {2012-02-27 09:44:34 +0000}, + Journal = {Journal de Math{\'e}matiques Pures et Appliqu\'es}, + Number = {11}, + Pages = {1515--1554}, + Title = {Existence of weak solutions for an interaction problem + between an elastic structure and a compressible viscous + fluid}, + Volume = {84}, + Year = {2005} +} + +###Article{ boulakia-05, + Author = {Boulakia, M.}, + date-added = {2012-02-27 09:44:22 +0000}, + date-modified = {2012-02-27 09:44:34 +0000}, + Journal = {Journal de Math{\'e}matiques Pures et Appliqu\'es}, + Number = {11}, + Pages = {1515--1554}, + Title = {Existence of weak solutions for an interaction problem + between an elastic structure and a compressible viscous + fluid}, + Volume = {84}, + Year = {2005} +} + +@InCollection{ bourgeois-chevalier-picasso-rappaz-touzani-92, + Annote = {mhd, casting}, + Author = {Bourgeois, J. and Chevalier, P.-A. and Picasso, M. and + Rappaz, J. and Touzani, R.}, + BookTitle = {Finite Element in Fluids}, + Chapter = {19}, + code = {mhd13}, + Editor = {T.J. Chung}, + Pages = {479-507}, + Publisher = {Hemisphere Publishing Corporation}, + Series = {Series in Computational and physical processes in + mechanics and thermal sciences}, + Title = {Magnetohydrodynamic problem in the aluminium industry}, + Volume = {8}, + Year = {1992} +} + +###InCollection{ bourgeois-chevalier-picasso-rappaz-touzani-92, + Annote = {mhd, casting}, + Author = {Bourgeois, J. and Chevalier, P.-A. and Picasso, M. and + Rappaz, J. and Touzani, R.}, + BookTitle = {Finite Element in Fluids}, + Chapter = {19}, + code = {mhd13}, + Editor = {T.J. Chung}, + Pages = {479-507}, + Publisher = {Hemisphere Publishing Corporation}, + Series = {Series in Computational and physical processes in + mechanics and thermal sciences}, + Title = {Magnetohydrodynamic problem in the aluminium industry}, + Volume = {8}, + Year = {1992} +} + +@Article{ bovendeerd2012jbiomech, + Title = {Modeling of cardiac growth and remodeling of myofiber + orientation }, + Author = {Peter H.M. Bovendeerd}, + Journal = {Journal of Biomechanics }, + Year = {2012}, + Note = {Special Issue on Cardiovascular Solid Mechanics }, + Number = {5}, + Pages = {872 - 881}, + Volume = {45}, + Abstract = {The heart has the ability to respond to long-term changes + in its environment through changes in mass (growth), shape + (morphogenesis) and tissue properties (remodeling). For + improved quantitative understanding of cardiac growth and + remodeling (G&R) experimental studies need to be + complemented by mathematical models. This paper reviews + models for cardiac growth and remodeling of myofiber + orientation, as induced by mechanical stimuli. A + distinction is made between optimization models, that focus + on the end stage of G&R, and adaptation models, that + aim to more closely describe the mechanistic relation + between stimulus and effect. While many models demonstrate + qualitatively promising results, a lot of questions remain, + e.g. with respect to the choice of the stimulus for G&R + or the long-term stability of the outcome of the model. A + continued effort combining information on + mechanotransduction at the cellular level, experimental + observations on G&R at organ level, and testing of + hypotheses on stimulus?effect relations in mathematical + models is needed to answer these questions on cardiac + G&R. Ultimately, models of cardiac G&R seem + indispensable for patient-specific modeling, both to + reconstruct the actual state of the heart and to assess the + long-term effect of potential interventions. }, + DOI = {http://dx.doi.org/10.1016/j.jbiomech.2011.11.029}, + File = {bovendeerd12.pdf:bovendeerd12.pdf:PDF}, + ISSN = {0021-9290}, + Keywords = {Adaptation}, + timestamp = {2015/09/22}, + URL = {http://www.sciencedirect.com/science/article/pii/S0021929011007111} +} + +@Article{ bozzi_uncertainty_2017, + Title = {Uncertainty Propagation of Phase Contrast-{{MRI}} Derived + Inlet Boundary Conditions in Computational Hemodynamics + Models of Thoracic Aorta}, + Volume = {20}, + ISSN = {1025-5842}, + URL = {https://doi.org/10.1080/10255842.2017.1334770}, + DOI = {10.1080/10255842.2017.1334770}, + Abstract = {This study investigates the impact that uncertainty in + phase contrast-MRI derived inlet boundary conditions has on + patient-specific computational hemodynamics models of the + healthy human thoracic aorta. By means of Monte Carlo + simulations, we provide advice on where, when and how, it + is important to account for this source of uncertainty. The + study shows that the uncertainty propagates not only to the + intravascular flow, but also to the shear stress + distribution at the vessel wall. More specifically, the + results show an increase in the uncertainty of the + predicted output variables, with respect to the input + uncertainty, more marked for blood pressure and wall shear + stress. The methodological approach proposed here can be + easily extended to study uncertainty propagation in both + healthy and pathological computational hemodynamic + models.}, + Number = {10}, + JournalTitle = {Computer Methods in Biomechanics and Biomedical + Engineering}, + URLDate = {2019-02-20}, + Year = {2017-07-27}, + Pages = {1104-1112}, + Author = {Bozzi, Silvia and Morbiducci, Umberto and Gallo, Diego and + Ponzini, Raffaele and Rizzo, Giovanna and Bignardi, + Cristina and Passoni, Giuseppe}, + EPrintType = {pmid}, + EPrint = {28553722} +} + +@Article{ brackbill-76, + Author = {Brackbill, J.U.}, + code = {mhd44}, + Journal = {Methods in Computational Physics}, + Pages = {1-41}, + Title = {Numerical magnetohydrodynamics for high-beta plasmas}, + Volume = {16}, + Year = {1976} +} + +###Article{ brackbill-76, + Author = {Brackbill, J.U.}, + code = {mhd44}, + Journal = {Methods in Computational Physics}, + Pages = {1-41}, + Title = {Numerical magnetohydrodynamics for high-beta plasmas}, + Volume = {16}, + Year = {1976} +} + +@Article{ brackbill-pracht-73, + Author = {Brackbill, J.U. and Pracht, W.E.}, + code = {mhd43}, + Journal = {J. Comp. Phys.}, + Pages = {455-482}, + Title = {An Implicit, Almost-Lagrangian Algorithm for + Magnetohydrodynamics}, + Volume = {13}, + Year = {1973} +} + +###Article{ brackbill-pracht-73, + Author = {Brackbill, J.U. and Pracht, W.E.}, + code = {mhd43}, + Journal = {J. Comp. Phys.}, + Pages = {455-482}, + Title = {An Implicit, Almost-Lagrangian Algorithm for + Magnetohydrodynamics}, + Volume = {13}, + Year = {1973} +} + +@Article{ brady-morris-97, + Author = {Brady, J. F and Morris, J-F.}, + code = {cel18}, + Journal = {J. Fluid Mech.}, + Pages = {103--139}, + Title = {Microstructure of strongly sheared suspensions and its + impact on rheology and diffusion}, + Volume = {348}, + Year = {1997} +} + +###Article{ brady-morris-97, + Author = {Brady, J. F and Morris, J-F.}, + code = {cel18}, + Journal = {J. Fluid Mech.}, + Pages = {103--139}, + Title = {Microstructure of strongly sheared suspensions and its + impact on rheology and diffusion}, + Volume = {348}, + Year = {1997} +} + +@Article{ braess-wriggers-00, + Author = {Braess, H. and Wriggers, P.}, + code = {mob10}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Number = 190, + Pages = {95-109}, + Title = {Arbitrary {L}agrangian {E}ulerian finite element analysis + of free surface flow}, + Volume = 2000, + Year = 2000 +} + +###Article{ braess-wriggers-00, + Author = {Braess, H. and Wriggers, P.}, + code = {mob10}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Number = 190, + Pages = {95-109}, + Title = {Arbitrary {L}agrangian {E}ulerian finite element analysis + of free surface flow}, + Volume = 2000, + Year = 2000 +} + +@Article{ bramwell-hill-22, + Author = {Bramwell, J.C. and Hill, A.V.}, + Title = {The Velocity of the Pulse Wave in Man}, + Volume = {93}, + Number = {652}, + Pages = {298-306}, + Year = {1922}, + DOI = {10.1098/rspb.1922.0022}, + Journal = {Proceedings of the Royal Society of London. Series B, + Containing Papers of a Biological Character} +} + +###Article{ bramwell-hill-22, + Author = {Bramwell, J.C. and Hill, A.V.}, + Title = {The Velocity of the Pulse Wave in Man}, + Volume = {93}, + Number = {652}, + Pages = {298-306}, + Year = {1922}, + DOI = {10.1098/rspb.1922.0022}, + URL = {http://rspb.royalsocietypublishing.org/content/93/652/298.short}, + EPrint = {http://rspb.royalsocietypublishing.org/content/93/652/298.full.pdf+html}, + Journal = {Proceedings of the Royal Society of London. Series B, + Containing Papers of a Biological Character} +} + +@Article{ branch1999subspace, + Author = {Branch, Mary Ann and Thomas F. Coleman and Li, Yuying}, + Title = {A Subspace, Interior, and Conjugate Gradient Method for + Large-Scale Bound-Constrained Minimization Problems}, + Journal = {SIAM Journal on Scientific Computing}, + Year = {1999}, + Volume = {21}, + Pages = {1-23}, + Abstract = {A subspace adaptation of the Coleman-Li trust region and + interior method is proposed for solving large-scale + bound-constrained minimization problems. This method can be + implemented with either sparse Cholesky factorization or + conjugate gradient computation. Under reasonable conditions + the convergence properties of this subspace trust region + method are as strong as those of its full-space version. + Computational}, + timestamp = {2015.06.02} +} + +@Article{ brenier-99, + Author = {Brenier, Y.}, + Journal = {Nonlinearity}, + Number = {3}, + Pages = {495--512}, + Title = {Homogeneous hydrostatic flows with convex velocity + profiles}, + Volume = {12}, + Year = {1999} +} + +###Article{ brenier-99, + Author = {Brenier, Y.}, + Journal = {Nonlinearity}, + Number = {3}, + Pages = {495--512}, + Title = {Homogeneous hydrostatic flows with convex velocity + profiles}, + Volume = {12}, + Year = {1999} +} + +@Article{ brenner-99, + Author = {Brenner, S.}, + Journal = {Numerische Mathematik}, + Number = {2}, + Pages = {187--203}, + Title = {The condition number of the Schur complement in domain + decomposition}, + Volume = {83}, + Year = {1999} +} + +###Article{ brenner-99, + Author = {Brenner, S.}, + Journal = {Numerische Mathematik}, + Number = {2}, + Pages = {187--203}, + Title = {The condition number of the Schur complement in domain + decomposition}, + Volume = {83}, + Year = {1999} +} + +@Book{ brenner-scott-02, + Title = {{The mathematical theory of finite element methods}}, + Author = {Brenner, S.~C. and Scott, L.~R.}, + Year = {2002}, + Publisher = {Springer Verlag} +} + +###Book{ brenner-scott-02, + Title = {{The mathematical theory of finite element methods}}, + Author = {Brenner, S.~C. and Scott, L.~R.}, + Year = {2002}, + Publisher = {Springer Verlag} +} + +@Book{ brezis-83, + Author = {Brezis, H.}, + Publisher = {Masson}, + Title = {Analyse fonctionnelle, Th{\'e}orie et applications}, + Year = {1983} +} + +###Book{ brezis-83, + Author = {Brezis, H.}, + Publisher = {Masson}, + Title = {Analyse fonctionnelle, Th{\'e}orie et applications}, + Year = {1983} +} + +@Article{ brezzi-bristeau-franca-mallet-92, + Author = {Brezzi, F. and Bristeau, M.O. and Franca, L.P. and Mallet, + M. and Rog{\'e}, G.}, + Journal = {Comp. Meth App. Mech. Eng.}, + Pages = {117-129}, + Title = {A relationship between stabilized finite element method + and the Galerkin method with bubble functions}, + Volume = {96}, + Year = {1992} +} + +###Article{ brezzi-bristeau-franca-mallet-92, + Author = {Brezzi, F. and Bristeau, M.O. and Franca, L.P. and Mallet, + M. and Rog{\'e}, G.}, + Journal = {Comp. Meth App. Mech. Eng.}, + Pages = {117-129}, + Title = {A relationship between stabilized finite element method + and the Galerkin method with bubble functions}, + Volume = {96}, + Year = {1992} +} + +@InProceedings{ brezzi-marini-russo-96, + Author = {Brezzi, F. and Marini, D. and Russo, A.}, + BookTitle = {Computational method in Applied sciences}, + Organization = {ECCOMAS}, + Publisher = {Wiley}, + Title = {Pseudo residual-free bubbles and stabilized methods}, + Year = {1996} +} + +###InProceedings{ brezzi-marini-russo-96, + Author = {Brezzi, F. and Marini, D. and Russo, A.}, + BookTitle = {Computational method in Applied sciences}, + Organization = {ECCOMAS}, + Publisher = {Wiley}, + Title = {Pseudo residual-free bubbles and stabilized methods}, + Year = {1996} +} + +@InCollection{ brezzi-pitkaranta-84, + Author = {Brezzi, F. and Pitk{\"a}ranta, J.}, + Title = {On the stabilization of finite element approximations of + the {S}tokes equations}, + BookTitle = {Efficient solutions of elliptic systems (Kiel, 1984)}, + Series = {Notes Numer. Fluid Mech.}, + Volume = {10}, + Pages = {11--19}, + Publisher = {Vieweg}, + Year = {1984} +} + +###InCollection{ brezzi-pitkaranta-84, + Author = {Brezzi, F. and Pitk{\"a}ranta, J.}, + Title = {On the stabilization of finite element approximations of + the {S}tokes equations}, + BookTitle = {Efficient solutions of elliptic systems (Kiel, 1984)}, + Series = {Notes Numer. Fluid Mech.}, + Volume = {10}, + Pages = {11--19}, + Publisher = {Vieweg}, + Year = {1984} +} + +@Article{ brezzi-russo-94, + Author = {Brezzi, F. and Russo, A.}, + Journal = {Math. Mod. Meth. Appl. Sci.}, + Pages = {571-587}, + Title = {Choosing bubbles for advection-diffusion problems}, + Volume = {4}, + Year = {1994} +} + +###Article{ brezzi-russo-94, + Author = {Brezzi, F. and Russo, A.}, + Journal = {Math. Mod. Meth. Appl. Sci.}, + Pages = {571-587}, + Title = {Choosing bubbles for advection-diffusion problems}, + Volume = {4}, + Year = {1994} +} + +@Article{ brezzi1985two, + Title = {Two families of mixed finite elements for second order + elliptic problems}, + Author = {Brezzi, Franco and Douglas Jr, Jim and Marini, L + Donatella}, + Journal = {Numerische Mathematik}, + Volume = {47}, + Number = {2}, + Pages = {217--235}, + Year = {1985}, + Publisher = {Springer} +} + +@PhdThesis{ briane-90, + Author = {Briane, M.}, + Note = {th{\`e}se}, + School = {Universit{\'e} Paris VI}, + Title = {Homog{\'e}n{\'e}isation de mat{\'e}riaux fibr{\'e}s et + multi-couches}, + Year = {1990} +} + +###PhdThesis{ briane-90, + Author = {Briane, M.}, + Note = {th{\`e}se}, + School = {Universit{\'e} Paris VI}, + Title = {Homog{\'e}n{\'e}isation de mat{\'e}riaux fibr{\'e}s et + multi-couches}, + Year = {1990} +} + +@Article{ briane-93, + Author = {Briane, M.}, + fjournal = {RAIRO Mod{\'e}lisation Math{\'e}matique et Analyse + Num{\'e}rique}, + Journal = {RAIRO Mod{\'e}l. Math. Anal. Num{\'e}r.}, + Number = {6}, + Pages = {759--775}, + Title = {Three models of nonperiodic fibrous materials obtained by + homogenization}, + Volume = {27}, + Year = {1993} +} + +###Article{ briane-93, + Author = {Briane, M.}, + fjournal = {RAIRO Mod{\'e}lisation Math{\'e}matique et Analyse + Num{\'e}rique}, + Journal = {RAIRO Mod{\'e}l. Math. Anal. Num{\'e}r.}, + Number = {6}, + Pages = {759--775}, + Title = {Three models of nonperiodic fibrous materials obtained by + homogenization}, + Volume = {27}, + Year = {1993} +} + +@Article{ briane-94, + Author = {Briane, M.}, + fjournal = {Journal de Math{\'e}matiques Pures et Appliqu{\'e}es. + Neuvi{\`e}me S{\'e}rie}, + Journal = {J. Math. Pures Appl. (9)}, + Number = {1}, + Pages = {47--66}, + Title = {Homogenization of a nonperiodic material}, + Volume = {73}, + Year = {1994} +} + +###Article{ briane-94, + Author = {Briane, M.}, + fjournal = {Journal de Math{\'e}matiques Pures et Appliqu{\'e}es. + Neuvi{\`e}me S{\'e}rie}, + Journal = {J. Math. Pures Appl. (9)}, + Number = {1}, + Pages = {47--66}, + Title = {Homogenization of a nonperiodic material}, + Volume = {73}, + Year = {1994} +} + +@Article{ brooks-hughes-82, + Author = {Brooks, A.N. and Hughes, T.J.R.}, + Journal = {Comp. Meth. App. Mech. Eng.}, + Pages = {199-259}, + Title = {Streamline upwind/{Petrov-Galerkin} formulations for + convection dominated flows with particular emphasis on the + incompressible {Navier-Stokes} equations}, + Volume = {32}, + Year = {1982} +} + +###Article{ brooks-hughes-82, + Author = {Brooks, A.N. and Hughes, T.J.R.}, + Journal = {Comp. Meth. App. Mech. Eng.}, + Pages = {199-259}, + Title = {Streamline upwind/{Petrov-Galerkin} formulations for + convection dominated flows with particular emphasis on the + incompressible {Navier-Stokes} equations}, + Volume = {32}, + Year = {1982} +} + +@Article{ brooks1982streamline, + Title = {Streamline upwind/{P}etrov-{G}alerkin formulations for + convection dominated flows with particular emphasis on the + incompressible {N}avier-{S}tokes equations}, + Author = {Brooks, Alexander N and Hughes, Thomas JR}, + Journal = {Computer methods in applied mechanics and engineering}, + Volume = {32}, + Number = {1}, + Pages = {199--259}, + Year = {1982}, + Publisher = {Elsevier} +} + +###Article{ brooks1982streamline, + Title = {Streamline upwind/{P}etrov-{G}alerkin formulations for + convection dominated flows with particular emphasis on the + incompressible {N}avier-{S}tokes equations}, + Author = {Brooks, Alexander N and Hughes, Thomas JR}, + Journal = {Computer methods in applied mechanics and engineering}, + Volume = {32}, + Number = {1}, + Pages = {199--259}, + Year = {1982}, + Publisher = {Elsevier} +} + +@Article{ brown-saad-94, + Author = {Brown, P. N. and Saad, Y.}, + fjournal = {SIAM Journal on Optimization}, + Journal = {SIAM J. Optim.}, + Number = {2}, + Pages = {297--330}, + Title = {Convergence theory of nonlinear {N}ewton-{K}rylov + algorithms}, + Volume = {4}, + Year = {1994} +} + +###Article{ brown-saad-94, + Author = {Brown, P. N. and Saad, Y.}, + fjournal = {SIAM Journal on Optimization}, + Journal = {SIAM J. Optim.}, + Number = {2}, + Pages = {297--330}, + Title = {Convergence theory of nonlinear {N}ewton-{K}rylov + algorithms}, + Volume = {4}, + Year = {1994} +} + +@Book{ brown_magnetic_2014, + Location = {{Hoboken, New Jersey}}, + Title = {Magnetic {{Resonance Imaging}}: {{Physical Principles}} + and {{Sequence Design}}}, + Edition = {Second edition}, + ISBN = {978-0-471-72085-0}, + ShortTitle = {Magnetic Resonance Imaging}, + PageTotal = {944}, + Publisher = {{John Wiley \& Sons, Inc}}, + Year = {2014}, + Author = {Brown, Robert W. and Cheng, Yu-Chung N. and Haacke, E. + Mark and Thompson, Michael R. and Venkatesan, Ramesh} +} + +@Article{ bruil-beugeling-feijen-van-aken-95, + Annote = {blood, filtration, porous}, + Author = {Bruil, A. and Beugeling, T and Feijen, J. and van Aken, W. + G.}, + code = {cel17}, + Journal = {Transfusion Medicine Reviews}, + Number = {2}, + Pages = {145-166}, + Title = {The mechanisms of leukocyte removal by filtration}, + Volume = {9}, + Year = {1995} +} + +###Article{ bruil-beugeling-feijen-van-aken-95, + Annote = {blood, filtration, porous}, + Author = {Bruil, A. and Beugeling, T and Feijen, J. and van Aken, W. + G.}, + code = {cel17}, + Journal = {Transfusion Medicine Reviews}, + Number = {2}, + Pages = {145-166}, + Title = {The mechanisms of leukocyte removal by filtration}, + Volume = {9}, + Year = {1995} +} + +@Article{ buenoorovio2008jtb, + Title = "Minimal model for human ventricular action potentials in + tissue ", + Journal = "Journal of Theoretical Biology ", + Volume = "253", + Number = "3", + Pages = "544 - 560", + Year = "2008", + Note = "", + ISSN = "0022-5193", + DOI = "http://dx.doi.org/10.1016/j.jtbi.2008.03.029", + URL = "http://www.sciencedirect.com/science/article/pii/S0022519308001690", + Author = "Alfonso Bueno-Orovio and Elizabeth M. Cherry and Flavio H. + Fenton", + Keywords = "Reentrant arrhythmias " +} + +@PhdThesis{ buffard-93, + Author = {T. Buffard}, + Month = {d{\'e}cembre}, + School = {universit{\'e} de Paris VI}, + Title = {Analyse de quelques m{\'e}thodes de Volumes Finis non + structur{\'e}s pour la r{\'e}solution des {\'e}quations + d'Euler}, + Year = {1993} +} + +###PhdThesis{ buffard-93, + Author = {T. Buffard}, + Month = {d{\'e}cembre}, + School = {universit{\'e} de Paris VI}, + Title = {Analyse de quelques m{\'e}thodes de Volumes Finis non + structur{\'e}s pour la r{\'e}solution des {\'e}quations + d'Euler}, + Year = {1993} +} + +@Article{ bull2013h, + Title = {Human non-contrast T1 values and correlation with + histology in diffuse fibrosis.}, + Author = {Bull, Sacha and White, Steven K. and Piechnik, Stefan K. + and Flett, Andrew S. and Ferreira, Vanessa M. and Loudon, + Margaret and Francis, Jane M. and Karamitsos, Theodoros D. + and Prendergast, Bernard D. and Robson, Matthew D. and + Neubauer, Stefan and Moon, James C. and Myerson, Saul G.}, + Journal = {Heart}, + Year = {2013}, + Month = {Jul}, + Number = {13}, + Pages = {932--937}, + Volume = {99}, + Abstract = {Aortic stenosis (AS) leads to diffuse fibrosis in the + myocardium, which is linked to adverse outcome. Myocardial + T1 values change with tissue composition.To test the + hypothesis that our recently developed non-contrast cardiac + magnetic resonance (CMR) T1 mapping sequence could identify + myocardial fibrosis without contrast agent.A prospective + CMR non-contrast T1 mapping study of 109 patients with + moderate and severe AS and 33 age- and gender-matched + controls.CMR at 1.5 T, including non-contrast T1 mapping + using a shortened modified Look-Locker inversion recovery + sequence, was carried out. Biopsy samples for histological + assessment of collagen volume fraction (CVF\%) were + obtained in 19 patients undergoing aortic valve + replacement.There was a significant correlation between T1 + values and CVF\% (r=0.65, p=0.002). Mean T1 values were + significantly longer in all groups with severe AS (972 ± + 33 ms in severe asymptomatic, 1014 ± 38 ms in severe + symptomatic) than in normal controls (944 ± 16 ms) + (p<0.05). The strongest associations with T1 values were + for aortic valve area (r=-0.40, p=0.001) and left + ventricular mass index (LVMI) (r=0.36, p=0.008), and these + were the only independent predictors on multivariate + analysis.Non-contrast T1 values are increased in patients + with severe AS and further increase in symptomatic compared + with asymptomatic patients. T1 values lengthened with + greater LVMI and correlated with the degree of + biopsy-quantified fibrosis. This may provide a useful + clinical assessment of diffuse myocardial fibrosis in the + future.}, + DOI = {10.1136/heartjnl-2012-303052}, + Institution = {Department of Cardiovascular Medicine, University of + Oxford Centre for Clinical Magnetic Resonance Research, + John Radcliffe Hospital, Level 0, Headley Way, Oxford OX3 + 9DU, UK.}, + Keywords = {Aged; Aged, 80 and over; Aortic Valve Stenosis, + diagnosis/metabolism/pathology; Aortic Valve, + chemistry/pathology; Asymptomatic Diseases; Biological + Markers, analysis; Biopsy; Case-Control Studies; Chi-Square + Distribution; Collagen, analysis; England; Female; + Fibrosis; Heart Ventricles, chemistry/pathology; Humans; + Magnetic Resonance Imaging; Male; Middle Aged; Multivariate + Analysis; Myocardium, chemistry/pathology; Predictive Value + of Tests; Prospective Studies; Severity of Illness Index}, + Language = {eng}, + medline-pst = {ppublish}, + owner = {stoeckc}, + pii = {heartjnl-2012-303052}, + pmid = {23349348}, + timestamp = {2015.07.24}, + URL = {http://dx.doi.org/10.1136/heartjnl-2012-303052} +} + +@Article{ burchfield2013circ, + Title = {Pathological Ventricular Remodeling: Mechanisms: Part 1 of + 2}, + Author = {Burchfield, Jana S. and Xie, Min and Hill, Joseph A.}, + Journal = {Circulation}, + Year = {2013}, + Number = {4}, + Pages = {388-400}, + Volume = {128}, + Abstract = {Despite declines in heart failure morbidity and mortality + with current therapies, rehospitalization rates remain + distressingly high, substantially affecting individuals, + society, and the economy. As a result, the need for new + therapeutic advances and novel medical devices is urgent. + Disease-related left ventricular remodeling is a complex + process involving cardiac myocyte growth and death, + vascular rarefaction, fibrosis, inflammation, and + electrophysiological remodeling. Because these events are + highly interrelated, targeting a single molecule or process + may not be sufficient. Here, we review molecular and + cellular mechanisms governing pathological ventricular + remodeling.}, + DOI = {10.1161/CIRCULATIONAHA.113.001878}, + EPrint = {http://circ.ahajournals.org/content/128/4/388.full.pdf+html}, + File = {burchfield13.pdf:burchfield13.pdf:PDF}, + timestamp = {2015/09/20}, + URL = {http://circ.ahajournals.org/content/128/4/388.abstract} +} + +@Article{ burman-fernandez-07, + Author = {Burman, E. and Fern{\'a}ndez, M.A.}, + Journal = {C. R. Math. Acad. Sci. Paris}, + Number = {8}, + Pages = {467--472}, + Title = {Stabilized explicit coupling for fluid-structure + interaction using {N}itsche's method}, + Volume = {345}, + Year = {2007} +} + +###Article{ burman-fernandez-07, + Author = {Burman, E. and Fern{\'a}ndez, M.A.}, + Journal = {C. R. Math. Acad. Sci. Paris}, + Number = {8}, + Pages = {467--472}, + Title = {Stabilized explicit coupling for fluid-structure + interaction using {N}itsche's method}, + Volume = {345}, + Year = {2007} +} + +@Article{ burman-fernandez-09, + Author = {Burman, E. and Fern\'andez, M.A.}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Number = {5--8}, + Pages = {766--784}, + Title = {Stabilization of explicit coupling in fluid-structure + interaction involving fluid incompressibility}, + Volume = {198}, + Year = {2009} +} + +###Article{ burman-fernandez-09, + Author = {Burman, E. and Fern\'andez, M.A.}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Number = {5--8}, + Pages = {766--784}, + Title = {Stabilization of explicit coupling in fluid-structure + interaction involving fluid incompressibility}, + Volume = {198}, + Year = {2009} +} + +@Unpublished{ burman-fernandez-xx, + Author = {Burman, E. and Fern\'andez, M.A.}, + Note = {In preparation}, + Title = {On the {N}itsche implicit/explicit coupling of + parabolic-hyperbolic systems} +} + +###Unpublished{ burman-fernandez-xx, + Author = {Burman, E. and Fern\'andez, M.A.}, + Note = {In preparation}, + Title = {On the {N}itsche implicit/explicit coupling of + parabolic-hyperbolic systems} +} + +@Article{ burmanhansbo07, + Author = {Burman, Erik and Hansbo, Peter}, + Title = {A unified stabilized method for {S}tokes' and {D}arcy's + equations}, + Journal = {J. Comput. Appl. Math.}, + fjournal = {Journal of Computational and Applied Mathematics}, + Volume = {198}, + Year = {2007}, + Number = {1}, + Pages = {35--51}, + ISSN = {0377-0427}, + coden = {JCAMDI}, + mrclass = {65M60 (35Q35 76M10 76S05)}, + mrnumber = {MR2250387 (2007i:65076)}, + mrreviewer = {Michael Fr{\"o}hner}, + DOI = {10.1016/j.cam.2005.11.022} +} + +###Article{ burmanhansbo07, + Author = {Burman, Erik and Hansbo, Peter}, + Title = {A unified stabilized method for {S}tokes' and {D}arcy's + equations}, + Journal = {J. Comput. Appl. Math.}, + fjournal = {Journal of Computational and Applied Mathematics}, + Volume = {198}, + Year = {2007}, + Number = {1}, + Pages = {35--51}, + ISSN = {0377-0427}, + coden = {JCAMDI}, + mrclass = {65M60 (35Q35 76M10 76S05)}, + mrnumber = {MR2250387 (2007i:65076)}, + mrreviewer = {Michael Fr{\"o}hner}, + DOI = {10.1016/j.cam.2005.11.022}, + URL = {http://dx.doi.org/10.1016/j.cam.2005.11.022} +} + +@Article{ bz06, + Author = {Burman, E. and Zunino, P.}, + Journal = {Siam Jour. Num. Anal.}, + Pages = {1612--1638}, + Title = {A domain decomposition method based on interior penalties + for advection--diffusion--reaction problems}, + Volume = {44}, + Year = {2006} +} + +###Article{ bz06, + Author = {Burman, E. and Zunino, P.}, + Journal = {Siam Jour. Num. Anal.}, + Pages = {1612--1638}, + Title = {A domain decomposition method based on interior penalties + for advection--diffusion--reaction problems}, + Volume = {44}, + Year = {2006} +} + +@Article{ caballero_numerical_2015, + langid = {english}, + Title = {Numerical Simulation of Non-{{Newtonian}} Blood Flow + Dynamics in Human Thoracic Aorta}, + Volume = {18}, + ISSN = {1025-5842, 1476-8259}, + URL = {http://www.tandfonline.com/doi/abs/10.1080/10255842.2014.887698}, + DOI = {10.1080/10255842.2014.887698}, + Number = {11}, + JournalTitle = {Computer Methods in Biomechanics and Biomedical + Engineering}, + URLDate = {2019-02-13}, + Year = {2015-08-18}, + Pages = {1200-1216}, + Author = {Caballero, A.D. and Laín, S.} +} + +@InCollection{ caiazzo2018mathematical, + Title = {Mathematical Modeling of Blood Flow in the Cardiovascular + System}, + Author = {Caiazzo, A. and Vignon-Clementel, I.}, + BookTitle = {Quantification of Biophysical Parameters in Medical + Imaging}, + Pages = {45--70}, + Year = {2018}, + Publisher = {Springer} +} + +@Article{ caiazzo_assessment_2017, + Title = {Assessment of Reduced-Order Unscented {{Kalman}} Filter + for Parameter Identification in 1-Dimensional Blood Flow + Models Using Experimental Data}, + Volume = {33}, + Number = {8}, + JournalTitle = {International journal for numerical methods in biomedical + engineering}, + Year = {2017}, + Pages = {e2843}, + Author = {Caiazzo, A. and Caforio, Federica and Montecinos, Gino and + Muller, Lucas O. and Blanco, Pablo J. and Toro, Eluterio + F.} +} + +@Report{ caiazzo_projection_2010, + Title = {Projection Schemes for Fluid Flows through a Porous + Interface}, + Number = {7725}, + Institution = {{INRIA}}, + Type = {Research Report}, + Date = {2010}, + Author = {Caiazzo, Alfonso and Fernández, Miguel A. and Gerbeau, + Jean-Frédéric and Martin, Vincent} +} + +@Article{ cairncross-schunk-baer-rao-sackinger-00, + Author = {Cairncross, R.A. and Schunk, P.R. and Baer, T.A. and Rao, + R. and Sackinger, P.A.}, + code = {mob5}, + Journal = {Int. Jour. Num. Meth. Fluids}, + Pages = {375-403}, + Title = {A finite element method for free surface flows of + incompressible fluids in three dimensions. {Part I}: + Boundary fitted mesh motion}, + Volume = {33}, + Year = {2000} +} + +###Article{ cairncross-schunk-baer-rao-sackinger-00, + Author = {Cairncross, R.A. and Schunk, P.R. and Baer, T.A. and Rao, + R. and Sackinger, P.A.}, + code = {mob5}, + Journal = {Int. Jour. Num. Meth. Fluids}, + Pages = {375-403}, + Title = {A finite element method for free surface flows of + incompressible fluids in three dimensions. {Part I}: + Boundary fitted mesh motion}, + Volume = {33}, + Year = {2000} +} + +@Article{ callot2003mrm, + Title = {In vivo study of microcirculation in canine myocardium + using the IVIM method}, + Author = {Callot, Virginie and Bennett, Eric and Decking, Ulrich + K.M. and Balaban, Robert S. and Wen, Han}, + Journal = {Magnetic Resonance in Medicine}, + Year = {2003}, + Number = {3}, + Pages = {531--540}, + Volume = {50}, + DOI = {10.1002/mrm.10568}, + File = {:Callot2003MRM.pdf:PDF}, + ISSN = {1522-2594}, + Keywords = {IVIM, heart}, + Publisher = {Wiley-Blackwell}, + URL = {http://dx.doi.org/10.1002/mrm.10568} +} + +@Article{ campbell_effect_2012, + Title = {Effect of Inlet Velocity Profiles on Patient-Specific + Computational Fluid Dynamics Simulations of the Carotid + Bifurcation}, + Volume = {134}, + Number = {5}, + JournalTitle = {Journal of biomechanical engineering}, + Year = {2012}, + Pages = {051001}, + Author = {Campbell, Ian C. and Ries, Jared and Dhawan, Saurabh S. + and Quyyumi, Arshed A. and Taylor, W. Robert and Oshinski, + John N.} +} + +@Unpublished{ cances-gerbeau-mikelic, + Author = {Canc{\`e}s, E. and Gerbeau, J-F. and Mikelic, A.}, + Note = {en pr{\'e}paration} +} + +###Unpublished{ cances-gerbeau-mikelic, + Author = {Canc{\`e}s, E. and Gerbeau, J-F. and Mikelic, A.}, + Note = {en pr{\'e}paration} +} + +@Unpublished{ cannone, + Author = {Cannone, M. and Planchon, F.}, + Note = {submitted to {\it Diff. Int. Eq.}}, + Title = {On the nonstationary {Navier-Stokes} equations with an + external force} +} + +###Unpublished{ cannone, + Author = {Cannone, M. and Planchon, F.}, + Note = {submitted to {\it Diff. Int. Eq.}}, + Title = {On the nonstationary {Navier-Stokes} equations with an + external force} +} + +@Unpublished{ cannone2, + Author = {Cannone, M. and Planchon, F.}, + Note = {submitted to {\it Revista Matematica Iberoamericana}}, + Title = {On the regularity of the bilinear terms for solutions to + the incompressible {Navier-Stokes} equations} +} + +###Unpublished{ cannone2, + Author = {Cannone, M. and Planchon, F.}, + Note = {submitted to {\it Revista Matematica Iberoamericana}}, + Title = {On the regularity of the bilinear terms for solutions to + the incompressible {Navier-Stokes} equations} +} + +@Article{ canstein_3d_2008, + Title = {{{3D MR}} Flow Analysis in Realistic Rapid-Prototyping + Model Systems of the Thoracic Aorta: Comparison with in + Vivo Data and Computational Fluid Dynamics in Identical + Vessel Geometries}, + ShortTitle = {{{3D MR}} Flow Analysis in Realistic Rapid-Prototyping + Model Systems of the Thoracic Aorta}, + Author = {Canstein, C. and Cachot, P. and Faust, A. and Stalder, A. + F. and Bock, J. and Frydrychowicz, A. and K{\"u}ffer, J. + and Hennig, J. and Markl, Michael}, + Year = {2008}, + Volume = {59}, + Pages = {535--546}, + Journal = {Magnetic Resonance in Medicine: An Official Journal of the + International Society for Magnetic Resonance in Medicine}, + Number = {3} +} + +@Unpublished{ carmody-2005, + Author = {Carmody, C.J. and Burriesci, G. and Howard, I.C. and + Patterson, E.A.}, + Journal = {Journal of Biomechanics}, + Title = {An approach to the simulation of fluid-structure + interaction in the aortic valve}, + Year = {2005} +} + +###Unpublished{ carmody-2005, + Author = {Carmody, C.J. and Burriesci, G. and Howard, I.C. and + Patterson, E.A.}, + Journal = {Journal of Biomechanics}, + Title = {An approach to the simulation of fluid-structure + interaction in the aortic valve}, + Year = {2005} +} + +@Article{ carrillo-99, + Author = {Carrillo, J.}, + Journal = {Arch. Rational Mech. Anal.}, + Pages = {269-361}, + Volume = {147}, + Year = {1999} +} + +###Article{ carrillo-99, + Author = {Carrillo, J.}, + Journal = {Arch. Rational Mech. Anal.}, + Pages = {269-361}, + Volume = {147}, + Year = {1999} +} + +@Article{ carrillo2018optimal, + Title = {Optimal Dual-VENC Unwrapping in Phase-Contrast MRI}, + Author = {Carrillo, Hugo and Osses, Axel and Uribe, Sergio and + Bertoglio, Crist{\'o}bal}, + Journal = {IEEE transactions on medical imaging}, + Volume = {38}, + Number = {5}, + Pages = {1263--1270}, + Year = {2018}, + Publisher = {IEEE} +} + +@Article{ carrillo_optimal_2018, + Title = {Optimal {{Dual}}-{{VENC}} ({{ODV}}) {{Unwrapping}} in + {{Phase}}-{{Contrast MRI}}}, + Author = {Carrillo, Hugo and Osses, Axel and Uribe, Sergio and + Bertoglio, Crist{\'o}bal}, + Year = {2018}, + Journal = {IEEE transactions on medical imaging} +} + +@Article{ carrillo_optimal_2018-1, + Title = {Optimal {{Dual}}-{{VENC}} ({{ODV}}) {{Unwrapping}} in + {{Phase}}-{{Contrast MRI}}}, + ISSN = {0278-0062}, + DOI = {10.1109/TMI.2018.2882553}, + JournalTitle = {IEEE Transactions on Medical Imaging}, + Date = {2018}, + Pages = {1-1}, + Author = {Carrillo, H. and Osses, A. and Uribe, S. and Bertoglio, + C.} +} + +@Article{ carrive-le-tallec-mouro-95, + Author = {Carrive, M. and Le Tallec, P. and Mouro, J.}, + Journal = {Revue Europ{\'e}enne des El{\'e}ments Finis}, + Number = {5-6}, + Pages = {633-662}, + Title = {Approximation par El{\'e}ments Finis d'un mod{\`e}le de + coques minces g{\'e}om{\'e}triquement exact}, + Volume = {4}, + Year = {1995} +} + +###Article{ carrive-le-tallec-mouro-95, + Author = {Carrive, M. and Le Tallec, P. and Mouro, J.}, + Journal = {Revue Europ{\'e}enne des El{\'e}ments Finis}, + Number = {5-6}, + Pages = {633-662}, + Title = {Approximation par El{\'e}ments Finis d'un mod{\`e}le de + coques minces g{\'e}om{\'e}triquement exact}, + Volume = {4}, + Year = {1995} +} + +@Article{ casas_4d_2016, + Title = {{{4D}} Flow {{MRI}}-{{Based}} Pressure Loss Estimation in + Stenotic Flows: {{Evaluation}} Using Numerical + Simulations}, + Volume = {75}, + ShortTitle = {{{4D}} Flow {{MRI}}-{{Based}} Pressure Loss Estimation in + Stenotic Flows}, + Number = {4}, + JournalTitle = {Magnetic resonance in medicine}, + Year = {2016}, + Pages = {1808--1821}, + Author = {Casas, Belen and Lantz, Jonas and Dyverfeldt, Petter and + Ebbers, Tino} +} + +@InBook{ caseau-62, + Annote = {mhd, flow}, + Author = {Caseau, P.}, + code = {mhd19}, + Pages = {63-83}, + Publisher = {Eyrolles}, + Series = {Collection du Laboratoire National d'Hydraulique}, + Title = {Ecoulements plans en magn{\'e}tohydrodynamique}, + Year = {1962} +} + +###InBook{ caseau-62, + Annote = {mhd, flow}, + Author = {Caseau, P.}, + code = {mhd19}, + Pages = {63-83}, + Publisher = {Eyrolles}, + Series = {Collection du Laboratoire National d'Hydraulique}, + Title = {Ecoulements plans en magn{\'e}tohydrodynamique}, + Year = {1962} +} + +@InProceedings{ castro-diaz-hecht-mohammadi-95, + Author = {Castro-Diaz, M.J. and Hecht, F. and Mohammadi, B.}, + BookTitle = {Proc. of the 4th Int. meshing Roundtable, Albuquerque, + USA}, + Month = {Oct.}, + Title = {New progress in anisotropic grid adaptation for inviscid + and viscous flows simulations}, + Year = {1995} +} + +###InProceedings{ castro-diaz-hecht-mohammadi-95, + Author = {Castro-Diaz, M.J. and Hecht, F. and Mohammadi, B.}, + BookTitle = {Proc. of the 4th Int. meshing Roundtable, Albuquerque, + USA}, + Month = {Oct.}, + Title = {New progress in anisotropic grid adaptation for inviscid + and viscous flows simulations}, + Year = {1995} +} + +@Unpublished{ causin-gerbeau, + Author = {Causin, P. and Gerbeau, J-F.}, + Note = {in preparation}, + Title = {Parallel-in-time fluid-structure simulations} +} + +###Unpublished{ causin-gerbeau, + Author = {Causin, P. and Gerbeau, J-F.}, + Note = {in preparation}, + Title = {Parallel-in-time fluid-structure simulations} +} + +@Article{ causin-gerbeau-nobile-05, + Author = {Causin, P. and Gerbeau, J-F. and Nobile, F.}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Number = {42--44}, + Pages = {4506--4527}, + Title = {Added-mass effect in the design of partitioned algorithms + for fluid-structure problems}, + Volume = {194}, + Year = {2005} +} + +###Article{ causin-gerbeau-nobile-05, + Author = {Causin, P. and Gerbeau, J-F. and Nobile, F.}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Number = {42--44}, + Pages = {4506--4527}, + Title = {Added-mass effect in the design of partitioned algorithms + for fluid-structure problems}, + Volume = {194}, + Year = {2005} +} + +@Article{ causin2005added, + Title = {Added-mass effect in the design of partitioned algorithms + for fluid--structure problems}, + Author = {Causin, P. and Gerbeau, J-F. and Nobile, F.}, + Journal = {Computer methods in applied mechanics and engineering}, + Volume = {194}, + Number = {42-44}, + Pages = {4506--4527}, + Year = {2005}, + Publisher = {Elsevier} +} + +@Article{ cavalcante-etal-11, + Author = {Cavalcante, J. and Lima, J. and Redheuil, A. and + Al-Mallah, M.}, + Title = {Aortic stiffness: current understanding and future + directions}, + Journal = {Journal of the American College of Cardiology}, + Volume = {57}, + Year = {2011}, + Number = {14}, + Pages = {1511-1522}, + pubmedid = {}, + ISSN = {0735-1097} +} + +@Article{ cayco_finite_1986, + Title = {Finite Element Technique for Optimal Pressure Recovery + from Stream Function Formulation of Viscous Flows}, + Volume = {46}, + Number = {174}, + JournalTitle = {Mathematics of computation}, + Year = {1986}, + Pages = {371--377}, + Author = {Cayco, M. E. and Nicolaides, R. A.} +} + +@Article{ cazeau-alonso-2004, + Author = {Cazeau, S. and Alonso, C. and Jauvert, G. and Lazarus, A. + and Ritter, P.}, + Journal = {Europace}, + Pages = {S42-S48}, + Title = {Cardiac resynchronization therapy}, + Volume = {5}, + Year = {2004} +} + +###Article{ cazeau-alonso-2004, + Author = {Cazeau, S. and Alonso, C. and Jauvert, G. and Lazarus, A. + and Ritter, P.}, + Journal = {Europace}, + Pages = {S42-S48}, + Title = {Cardiac resynchronization therapy}, + Volume = {5}, + Year = {2004} +} + +###Article{ cazeau-alonso-2004, + Author = {Cazeau, S. and Alonso, C. and Jauvert, G. and Lazarus, A. + and Ritter, P.}, + Journal = {Europace}, + Pages = {S42-S48}, + Title = {Cardiac resynchronization therapy}, + Volume = {5}, + Year = {2004} +} + +###Article{ cazeau-alonso-2004, + Author = {Cazeau, S. and Alonso, C. and Jauvert, G. and Lazarus, A. + and Ritter, P.}, + Journal = {Europace}, + Pages = {S42-S48}, + Title = {Cardiac resynchronization therapy}, + Volume = {5}, + Year = {2004} +} + +@Article{ cazeau-leclercq-lavergne-2001, + Author = {Cazeau, S. and Leclercq, C. and Lavergne, T. and et al.}, + Journal = {The New England Journal of Medicine}, + Number = {12}, + Title = {Effects of multisite biventricular pacing in patients with + heart failure and intraventricular conduction delay}, + Volume = {344}, + Year = {2001} +} + +###Article{ cazeau-leclercq-lavergne-2001, + Author = {Cazeau, S. and Leclercq, C. and Lavergne, T. and et al.}, + Journal = {The New England Journal of Medicine}, + Number = {12}, + Title = {Effects of multisite biventricular pacing in patients with + heart failure and intraventricular conduction delay}, + Volume = {344}, + Year = {2001} +} + +###Article{ cazeau-leclercq-lavergne-2001, + Author = {Cazeau, S. and Leclercq, C. and Lavergne, T. and et al.}, + Journal = {The New England Journal of Medicine}, + Number = {12}, + Title = {Effects of multisite biventricular pacing in patients with + heart failure and intraventricular conduction delay}, + Volume = {344}, + Year = {2001} +} + +###Article{ cazeau-leclercq-lavergne-2001, + Author = {Cazeau, S. and Leclercq, C. and Lavergne, T. and et al.}, + Journal = {The New England Journal of Medicine}, + Number = {12}, + Title = {Effects of multisite biventricular pacing in patients with + heart failure and intraventricular conduction delay}, + Volume = {344}, + Year = {2001} +} + +@Article{ cazeau-ritter-94, + Author = {Cazeau, S. and Ritter, P. and Bakdach, H. and et al.}, + Journal = {Pacing Clin. Electrophysiol}, + Pages = {1974-1979}, + Title = {Four chamber pacing in dilated cardiomyopathy}, + Volume = 17, + Year = 1994 +} + +###Article{ cazeau-ritter-94, + Author = {Cazeau, S. and Ritter, P. and Bakdach, H. and et al.}, + Journal = {Pacing Clin. Electrophysiol}, + Pages = {1974-1979}, + Title = {Four chamber pacing in dilated cardiomyopathy}, + Volume = 17, + Year = 1994 +} + +@Article{ cerqueira2002standardized, + Title = {Standardized myocardial segmentation and nomenclature for + tomographic imaging of the heart a statement for healthcare + professionals from the cardiac imaging committee of the + Council on Clinical Cardiology of the American Heart + Association}, + Author = {Cerqueira, Manuel D and Weissman, Neil J and Dilsizian, + Vasken and Jacobs, Alice K and Kaul, Sanjiv and Laskey, + Warren K and Pennell, Dudley J and Rumberger, John A and + Ryan, Thomas and Verani, Mario S and others}, + Journal = {Circulation}, + Volume = {105}, + Number = {4}, + Pages = {539--542}, + Year = {2002}, + Publisher = {Am Heart Assoc} +} + +@Article{ chabiniok-etal-11, + affiliation = {INRIA, Rocquencourt, B.P. 105, 78153 Le Chesnay, France}, + Author = {Chabiniok, R. and Moireau, P. and Lesault, P.-F. and + Rahmouni, A. and Deux, J.-F. and Chapelle, D.}, + ISSN = {1617-7959}, + Journal = {Biomechanics and Modeling in Mechanobiology}, + keyword = {Physics and Astronomy}, + Note = {10.1007/s10237-011-0337-8}, + Pages = {1-22}, + Publisher = {Springer Berlin / Heidelberg}, + Title = {Estimation of tissue contractility from cardiac cine-MRI + using a biomechanical heart model}, + URL = {http://dx.doi.org/10.1007/s10237-011-0337-8}, + Year = {2011}, + bdsk-url-1 = {http://dx.doi.org/10.1007/s10237-011-0337-8} +} + +@Article{ chabiniok2011, + affiliation = {INRIA, Rocquencourt, B.P. 105, 78153 Le Chesnay, France}, + Author = {Chabiniok, R. and Moireau, P. and Lesault, P.-F. and + Rahmouni, A. and Deux, J.-F. and Chapelle, D.}, + ISSN = {1617-7959}, + Journal = {Biomechanics and Modeling in Mechanobiology}, + keyword = {Physics and Astronomy}, + Note = {10.1007/s10237-011-0337-8}, + Pages = {1-22}, + Publisher = {Springer Berlin / Heidelberg}, + Title = {Estimation of tissue contractility from cardiac cine-MRI + using a biomechanical heart model}, + Year = {2011} +} + +@Article{ chabiniok2012bmmb, + Title = {Estimation of tissue contractility from cardiac cine-{MRI} + using a biomechanical heart model}, + Author = {Chabiniok, R. and Moireau, P. and Lesault, P.-F. and + Rahmouni, A. and Deux, J.-F. and Chapelle, D.}, + Journal = {Biomechanics and Modeling in Mechanobiology}, + Year = {2012}, + Month = {May}, + Number = {5}, + Pages = {609-630}, + Volume = {11}, + DOI = {10.1007/s10237-011-0337-8}, + File = {:chabiniok12.pdf:PDF}, + Keywords = {contractility, inverse problems, MRI}, + Publisher = {Springer-Verlag}, + timestamp = {2014/01/09} +} + +@Article{ chabiniok2016multiphysics, + Title = {Multiphysics and multiscale modelling, data--model fusion + and integration of organ physiology in the clinic: + ventricular cardiac mechanics}, + Author = {Chabiniok, Radomir and Wang, Vicky Y and + Hadjicharalambous, Myrianthi and Asner, Liya and Lee, Jack + and Sermesant, Maxime and Kuhl, Ellen and Young, Alistair A + and Moireau, Philippe and Nash, Martyn P and others}, + Journal = {Interface focus}, + Volume = {6}, + Number = {2}, + Pages = {20150083}, + Year = {2016}, + Publisher = {Royal Society} +} + +@Article{ chabiniok_multiphysics_2016, + Title = {Multiphysics and Multiscale Modelling, + Data\textendash{}model Fusion and Integration of Organ + Physiology in the Clinic: Ventricular Cardiac Mechanics}, + Volume = {6}, + ISSN = {2042-8898}, + ShortTitle = {Multiphysics and Multiscale Modelling, + Data\textendash{}model Fusion and Integration of Organ + Physiology in the Clinic}, + DOI = {10.1098/rsfs.2015.0083}, + Abstract = {With heart and cardiovascular diseases continually + challenging healthcare systems worldwide, translating basic + research on cardiac (patho)physiology into clinical care is + essential. Exacerbating this already extensive challenge is + the complexity of the heart, relying on its hierarchical + structure and function to maintain cardiovascular flow. + Computational modelling has been proposed and actively + pursued as a tool for accelerating research and + translation. Allowing exploration of the relationships + between physics, multiscale mechanisms and function, + computational modelling provides a platform for improving + our understanding of the heart. Further integration of + experimental and clinical data through data assimilation + and parameter estimation techniques is bringing + computational models closer to use in routine clinical + practice. This article reviews developments in + computational cardiac modelling and how their integration + with medical imaging data is providing new pathways for + translational cardiac modelling.}, + timestamp = {2017-11-16T15:24:06Z}, + Number = {2}, + URLDate = {2017-11-16}, + Journal = {Interface Focus}, + Author = {Chabiniok, R. and Wang, V. and Hadjicharalambous, M. and + Asner, L. and Lee, J. and Sermesant, M. and Kuhl, E. and + Young, A. and Moireau, P. and Nash, M. and Chapelle, D. and + Nordsletten, D.}, + Month = apr, + Year = {2016}, + File = {PubMed Central Full Text + PDF:/home/hoermann/.zotero/zotero/krpbc0h6.default/zotero/storage/4ID84DD3/Chabiniok + et al. - 2016 - Multiphysics and multiscale modelling, + data–model .pdf:application/pdf}, + pmid = {27051509}, + pmcid = {PMC4759748} +} + +@Book{ chapelle-bathe-03, + Author = {Chapelle, D. and Bathe, K.J.}, + Publisher = {Springer Verlag}, + Title = {The Finite Element Analysis of Shells - Fundamentals}, + Year = {2003} +} + +###Book{ chapelle-bathe-03, + Author = {Chapelle, D. and Bathe, K.J.}, + Publisher = {Springer Verlag}, + Title = {The Finite Element Analysis of Shells - Fundamentals}, + Year = {2003} +} + +@TechReport{ chapelle-cindea-buhan-moireau, + Author = {Chapelle, D. and C\^{\i}ndea, N. and de Buhan, M. and + Moireau, P.}, + date-added = {2011-09-09 15:34:42 +0200}, + date-modified = {2011-09-09 15:35:26 +0200}, + Institution = {INRIA}, + Note = {Submitted to CRAS Series I, + http://hal.inria.fr/inria-00619504/fr}, + Number = {7728}, + Title = {Exponential convergence of an observer based on partial + field measurements for the wave equation}, + Type = {Research Report}, + Year = {2011} +} + +###TechReport{ chapelle-cindea-buhan-moireau, + Author = {Chapelle, D. and C\^{\i}ndea, N. and de Buhan, M. and + Moireau, P.}, + date-added = {2011-09-09 15:34:42 +0200}, + date-modified = {2011-09-09 15:35:26 +0200}, + Institution = {INRIA}, + Note = {Submitted to CRAS Series I, + http://hal.inria.fr/inria-00619504/fr}, + Number = {7728}, + Title = {Exponential convergence of an observer based on partial + field measurements for the wave equation}, + Type = {Research Report}, + Year = {2011} +} + +@Unpublished{ chapelle-cindea-moireau, + Author = {Chapelle, D. and C\^{\i}ndea, N. and Moireau, P.}, + date-added = {2011-09-09 15:38:25 +0200}, + date-modified = {2011-09-09 15:39:57 +0200}, + Note = {Submitted to M3AS}, + Title = {Improving convergence in numerical analysis using + observers - The wave-like equation case} +} + +###Unpublished{ chapelle-cindea-moireau, + Author = {Chapelle, D. and C\^{\i}ndea, N. and Moireau, P.}, + date-added = {2011-09-09 15:38:25 +0200}, + date-modified = {2011-09-09 15:39:57 +0200}, + Note = {Submitted to M3AS}, + Title = {Improving convergence in numerical analysis using + observers - The wave-like equation case} +} + +@InProceedings{ chapelle-etal-09, + Author = {Chapelle, D. and Fern\'{a}ndez, M. A. and Gerbeau, J.-F. + and Moireau, P. and Sainte-Marie, J. and Zemzemi, N.}, + Title = {Numerical Simulation of the Electromechanical Activity of + the Heart}, + BookTitle = {Proceedings of the 5th International Conference on + Functional Imaging and Modeling of the Heart}, + Series = {FIMH '09}, + Year = {2009}, + ISBN = {978-3-642-01931-9}, + Location = {Nice, France}, + Pages = {357--365}, + numpages = {9}, + acmid = {1560736}, + Publisher = {Springer-Verlag}, + Address = {Berlin, Heidelberg} +} + +@Article{ chapelle-moireau-letallec-09, + Author = {Chapelle, D. and Moireau, P. and Le Tallec, P.}, + date-added = {2011-09-09 16:13:06 +0200}, + date-modified = {2011-09-09 16:13:06 +0200}, + Journal = {DCDS--A}, + Month = {January/February}, + Note = {A special issue Dedicated to Ta-Tsien Li on the Occasion + of his 70th Birthday}, + Number = {1/2}, + Pages = {65--84}, + read = {Yes}, + Title = {Robust filtering for joint state-parameter estimation in + distributed mechanical systems}, + Volume = {23}, + Year = {2009} +} + +###Article{ chapelle-moireau-letallec-09, + Author = {Chapelle, D. and Moireau, P. and Le Tallec, P.}, + date-added = {2011-09-09 16:13:06 +0200}, + date-modified = {2011-09-09 16:13:06 +0200}, + Journal = {DCDS--A}, + Month = {January/February}, + Note = {A special issue Dedicated to Ta-Tsien Li on the Occasion + of his 70th Birthday}, + Number = {1/2}, + Pages = {65--84}, + read = {Yes}, + Title = {Robust filtering for joint state-parameter estimation in + distributed mechanical systems}, + Volume = {23}, + Year = {2009} +} + +@Article{ chapelle2009compmech, + Title = {A poroelastic model valid in large strains with + applications to perfusion in cardiac modeling}, + Author = {Chapelle, D. and Gerbeau, J.-F. and Sainte-Marie, J. and + Vignon-Clementel, I. E.}, + Journal = {Computational Mechanics}, + Year = {2009}, + Month = {Dec}, + Number = {1}, + Pages = {91--101}, + Volume = {46}, + DOI = {10.1007/s00466-009-0452-x}, + File = {:Chapelle2009CompMech.pdf:PDF}, + ISSN = {1432-0924}, + Keywords = {Perfusion, FSI}, + Publisher = {Springer Science + Business Media}, + URL = {http://dx.doi.org/10.1007/s00466-009-0452-x} +} + +@Article{ chapelle2009robust, + Title = {Robust filtering for joint state parameter estimation for + distributed mechanical systems}, + Author = {Chapelle, Dominique and Moireau, Philippe and Le Tallec, + Patrick}, + Journal = {Discrete and Continuous Dynamical Systems-Series A}, + Volume = {23}, + Number = {1-2}, + Pages = {65--84}, + Year = {2009} +} + +@Article{ chapelle2012energy, + Title = {Energy-preserving muscle tissue model: formulation and + compatible discretizations}, + Author = {Chapelle, Dominique and Le Tallec, Patrick and Moireau, + Philippe and Sorine, Michel}, + Journal = {International Journal for Multiscale Computational + Engineering}, + Volume = {10}, + Number = {2}, + Year = {2012}, + Publisher = {Begel House Inc.} +} + +@Article{ chapelle2012ijmce, + Title = {An energy-preserving muscle tissue model: formulation and + compatible discretizations}, + Author = {Chapelle, Dominique and Le Tallec, Patrick and Moireau, + Philippe and Sorine, Michel}, + Journal = {International Journal for Multiscale Computational + Engineering}, + Year = {2012}, + Number = {2}, + Pages = {189--211}, + Volume = {10}, + DOI = {10.1615/IntJMultCompEng.2011002360}, + File = {:chapelle12.pdf:PDF}, + Publisher = {Begel House Inc.}, + timestamp = {2014/01/14} +} + +@Article{ chapelle2013dataassim, + Title = {Fundamental principles of data assimilation underlying the + Verdandi library: applications to biophysical model + personalization within euHeart}, + Author = {Chapelle, Dominique and Fragu, Marc and Mallet, Vivien and + Moireau, Philippe}, + Journal = {Medical \& biological engineering \& computing}, + Volume = {51}, + Number = {11}, + Pages = {1221--1233}, + Year = {2013}, + Publisher = {Springer} +} + +@Book{ chavent-09, + Author = {Chavent, G.}, + Title = {Nonlinear least squares for inverse problems}, + Series = {Scientific Computation}, + Note = {Theoretical foundations and step-by-step guide for + applications}, + Publisher = {Springer}, + Address = {New York}, + Year = {2009}, + Pages = {xiv+360}, + ISBN = {978-90-481-2784-9}, + mrclass = {65-02 (49N45 65N21 93E24)}, + mrnumber = {2554448 (2011d:65001)}, + mrreviewer = {Antonio C. G. Leit{\~a}o} +} + +###Book{ chavent-09, + Author = {Chavent, G.}, + Title = {Nonlinear least squares for inverse problems}, + Series = {Scientific Computation}, + Note = {Theoretical foundations and step-by-step guide for + applications}, + Publisher = {Springer}, + Address = {New York}, + Year = {2009}, + Pages = {xiv+360}, + ISBN = {978-90-481-2784-9}, + mrclass = {65-02 (49N45 65N21 93E24)}, + mrnumber = {2554448 (2011d:65001)}, + mrreviewer = {Antonio C. G. Leit{\~a}o} +} + +@Book{ chavent-jaffre-86, + Author = { Chavent, G. and Jaffr{\AA}, J.}, + Publisher = {North-Holland}, + Title = { Mathematical models and finite elements for reservoir + simulation : single phase, multiphase and multicomponent + flows through porous media}, + Year = {1986} +} + +###Book{ chavent-jaffre-86, + Author = { Chavent, G. and Jaffr{\AA}, J.}, + Publisher = {North-Holland}, + Title = { Mathematical models and finite elements for reservoir + simulation : single phase, multiphase and multicomponent + flows through porous media}, + Year = {1986} +} + +@Unpublished{ chen-perthame, + Author = {Chen, G.Q. and Perthame, B.}, + Note = {to appear in Ann. Inst. H. Poincar{\'e} (Anal. non + lin{\'e}aire)}, + Title = {Well-Posedness for Non-Isotropic Degenerate + Parabolic-Hyperbolic Equation} +} + +###Unpublished{ chen-perthame, + Author = {Chen, G.Q. and Perthame, B.}, + Note = {to appear in Ann. Inst. H. Poincar{\'e} (Anal. non + lin{\'e}aire)}, + Title = {Well-Posedness for Non-Isotropic Degenerate + Parabolic-Hyperbolic Equation} +} + +@Article{ chen2003remodeling, + Author = {Chen, Junjie and Song, Sheng-Kwei and Liu, Wei and McLean, + Mark and Allen, J. Stacy and Tan, Jie and Wickline, Samuel + A. and Yu, Xin}, + Title = {Remodeling of cardiac fiber structure after infarction in + rats quantified with diffusion tensor MRI}, + Journal = {American Journal of Physiology - Heart and Circulatory + Physiology}, + Year = {2003}, + Volume = {285}, + Pages = {H946--H954}, + Number = {3}, + DOI = {10.1152/ajpheart.00889.2002}, + ISBN = {1522-1539}, + ISSN = {0363-6135}, + Publisher = {American Physiological Society} +} + +@Article{ chen2005ajphcp, + Title = {Regional ventricular wall thickening reflects changes in + cardiac fiber and sheet structure during contraction: + quantification with diffusion tensor MRI.}, + Author = {Chen, Junjie and Liu, Wei and Zhang, Huiying and Lacy, Liz + and Yang, Xiaoxia and Song, Sheng-Kwei and Wickline, Samuel + A. and Yu, Xin}, + Journal = {Am J Physiol Heart Circ Physiol}, + Year = {2005}, + Month = {Nov}, + Number = {5}, + Pages = {H1898--H1907}, + Volume = {289}, + Abstract = {Dynamic changes of myocardial fiber and sheet structure + are key determinants of regional ventricular function. + However, quantitative characterization of the + contraction-related changes in fiber and sheet structure + has not been reported. The objective of this study was to + quantify cardiac fiber and sheet structure at selected + phases of the cardiac cycle. Diffusion tensor MRI was + performed on isolated, perfused Sprague-Dawley rat hearts + arrested or fixed in three states as follows: 1) potassium + arrested (PA), which represents end diastole; 2) + barium-induced contracture with volume (BV+), which + represents isovolumic contraction or early systole; and 3) + barium-induced contracture without volume (BV-), which + represents end systole. Myocardial fiber orientations at + the base, midventricle, and apex were determined from the + primary eigenvectors of the diffusion tensor. Sheet + structure was determined from the secondary and tertiary + eigenvectors at the same locations. We observed that the + transmural distribution of the myofiber helix angle + remained unchanged as contraction proceeded from PA to BV+, + but endocardial and epicardial fibers became more + longitudinally orientated in the BV- group. Although sheet + structure exhibited significant regional variations, + changes in sheet structure during myocardial contraction + were relatively uniform across regions. The magnitude of + the sheet angle, which is an index of local sheet slope, + decreased by 23 and 44\% in BV+ and BV- groups, + respectively, which suggests more radial orientation of the + sheet. In summary, we have shown for the first time that + geometric changes in both sheet and fiber orientation + provide a substantial mechanism for radial wall thickening + independent of active components due to myofiber + shortening. Our results provide direct evidence that sheet + reorientation is a primary determinant of myocardial wall + thickening.}, + DOI = {10.1152/ajpheart.00041.2005}, + Institution = {Cardiovascular Magnetic Resonance Laboratories, Department + of Medicine, Washington University, St Louis, Missouri, + USA.}, + Keywords = {Animals; Barium Compounds, pharmacology; Chlorides, + pharmacology; Data Interpretation, Statistical; Diffusion + Magnetic Resonance Imaging; Heart Ventricles, anatomy /&/ + histology; Heart, anatomy /&/ histology/physiology; In + Vitro Techniques; Muscle Fibers, Skeletal, physiology; + Myocardial Contraction, drug effects/physiology; Potassium + Chloride, pharmacology; Rats; Rats, Sprague-Dawley; + Systole; Ventricular Function}, + Language = {eng}, + medline-pst = {ppublish}, + owner = {stoeckc}, + pii = {289/5/H1898}, + pmid = {16219812}, + timestamp = {2015.07.24}, + URL = {http://dx.doi.org/10.1152/ajpheart.00041.2005} +} + +@Article{ cheng_assessment_2016, + langid = {english}, + Title = {Assessment of {{Hemodynamic Conditions}} in the {{Aorta + Following Root Replacement}} with {{Composite + Valve}}-{{Conduit Graft}}}, + Volume = {44}, + ISSN = {1573-9686}, + URL = {https://doi.org/10.1007/s10439-015-1453-x}, + DOI = {10.1007/s10439-015-1453-x}, + Abstract = {This paper presents the analysis of detailed hemodynamics + in the aortas of four patients following replacement with a + composite bio-prosthetic valve-conduit. Magnetic resonance + image-based computational models were set up for each + patient with boundary conditions comprising + subject-specific three-dimensional inflow velocity profiles + at the aortic root and central pressure waveform at the + model outlet. Two normal subjects were also included for + comparison. The purpose of the study was to investigate the + effects of the valve-conduit on flow in the proximal and + distal aorta. The results suggested that following the + composite valve-conduit implantation, the vortical flow + structure and hemodynamic parameters in the aorta were + altered, with slightly reduced helical flow index, elevated + wall shear stress and higher non-uniformity in wall shear + compared to normal aortas. Inter-individual analysis + revealed different hemodynamic conditions among the + patients depending on the conduit configuration in the + ascending aorta, which is a key factor in determining + post-operative aortic flow. Introducing a natural curvature + in the conduit to create a smooth transition between the + conduit and native aorta may help prevent the occurrence of + retrograde and recirculating flow in the aortic arch, which + is particularly important when a large portion or the + entire ascending aorta needs to be replaced.}, + Number = {5}, + JournalTitle = {Annals of Biomedical Engineering}, + ShortJournal = {Ann Biomed Eng}, + URLDate = {2019-03-09}, + Year = {2016-05-01}, + Pages = {1392-1404}, + Author = {Cheng, Zhuo and Kidher, Emaddin and Jarral, Omar A. and + O’Regan, Declan P. and Wood, Nigel B. and Athanasiou, + Thanos and Xu, Xiao Yun} +} + +@Article{ cheng_formula_2008, + Title = {Formula for the Viscosity of a Glycerol- Water Mixture}, + Author = {Cheng, Nian-Sheng}, + Year = {2008}, + Volume = {47}, + Pages = {3285--3288}, + Journal = {Industrial \& engineering chemistry research}, + Number = {9} +} + +@Article{ chien-80, + Annote = {blood, aggregation, red cell}, + Author = {Chien, S.}, + code = {cel5}, + Journal = {Adv. Chem. Ser.}, + Pages = {3-38}, + Title = {Aggregation of red blood cells: an electrochemical and + colloid chemical problem}, + Year = {1980} +} + +###Article{ chien-80, + Annote = {blood, aggregation, red cell}, + Author = {Chien, S.}, + code = {cel5}, + Journal = {Adv. Chem. Ser.}, + Pages = {3-38}, + Title = {Aggregation of red blood cells: an electrochemical and + colloid chemical problem}, + Year = {1980} +} + +@Article{ chien-jan-73, + Annote = {blood, red cell, aggregation}, + Author = {Chien, S. and Jan, K.M.}, + code = {cel4}, + Journal = {J. Supramolecular Structure}, + Pages = {385-409}, + Title = {Red cell aggregation by macromolecules. Roles of surface + adsorption and electrostatic repulsion}, + Volume = {1}, + Year = {1975} +} + +###Article{ chien-jan-73, + Annote = {blood, red cell, aggregation}, + Author = {Chien, S. and Jan, K.M.}, + code = {cel4}, + Journal = {J. Supramolecular Structure}, + Pages = {385-409}, + Title = {Red cell aggregation by macromolecules. Roles of surface + adsorption and electrostatic repulsion}, + Volume = {1}, + Year = {1975} +} + +@Article{ cho_effects_1991, + langid = {english}, + Title = {Effects of the Non-{{Newtonian}} Viscosity of Blood on + Flows in a Diseased Arterial Vessel. {{Part}} 1: {{Steady}} + Flows}, + Volume = {28}, + ISSN = {18785034, 0006355X}, + URL = {http://www.medra.org/servlet/aliasResolver?alias=iospress&doi=10.3233/BIR-1991-283-415}, + DOI = {10.3233/BIR-1991-283-415}, + ShortTitle = {Effects of the Non-{{Newtonian}} Viscosity of Blood on + Flows in a Diseased Arterial Vessel. {{Part}} 1}, + Abstract = {Effectsof the non-Newtonian viscosity of blood on a flow + in a coronary arterial castingof man were studied + numerically using a finite element method. Various + constitutive models were examined to model the + non-Newtonian viscosity of blood and their model constants + were sunrmarized. A method to incorporatethe non-Newtonian + vixosity of blood was introduced so that the viscosity + could be calculatedlocally. The Pressuredrop, wall shear + stressand velocity profiles for the caseof blood virosity + were comParedfor the caseof Newtonian viscoiity + (0.0.115poise). The effect of the non-Newtonian viscosity + of blood on \_ the overall pressrrri drop acrossthe + arterial casting was found to be significant at a flow of + the Reynoldsnumber of100 or less. Also in the region of + flow separationor recirculation, the non-Newtonian + viscosity of blood yields larger wall shear stressthan the + Newtonian case. The origin of the non-Newtonian viscosity + of blood was dixussed in relation to the viscoelasticity + and yield stressof blood.}, + Number = {3-4}, + JournalTitle = {Biorheology}, + URLDate = {2019-02-13}, + Year = {1991-06-01}, + Pages = {241-262}, + Author = {Cho, Young I. and Kensey, Kenneth R.} +} + +@Article{ chorin-68, + Author = {Chorin, A.J.}, + Journal = {Math. Comp.}, + Pages = {745--762}, + Title = {Numerical solution of the {N}avier-{S}tokes equations}, + Volume = {22}, + Year = {1968} +} + +###Article{ chorin-68, + Author = {Chorin, A.J.}, + Journal = {Math. Comp.}, + Pages = {745--762}, + Title = {Numerical solution of the {N}avier-{S}tokes equations}, + Volume = {22}, + Year = {1968} +} + +@Article{ chorin-69, + Author = {Chorin, A.J.}, + Journal = {Math. Comp.}, + Pages = {341--353}, + Title = {On the convergence of discrete approximations to the + {N}avier-{S}tokes equations}, + Volume = {23}, + Year = {1969} +} + +###Article{ chorin-69, + Author = {Chorin, A.J.}, + Journal = {Math. Comp.}, + Pages = {341--353}, + Title = {On the convergence of discrete approximations to the + {N}avier-{S}tokes equations}, + Volume = {23}, + Year = {1969} +} + +@Article{ chorin1968mathcomp, + Title = {Numerical solution of the {N}avier-{S}tokes equations}, + Author = {Chorin, A.J.}, + Journal = {Mathematics of Computation}, + Year = {1968}, + Pages = {745--762}, + Volume = {22}, + Keywords = {Navier-Stokes} +} + +@Article{ chorin1969mathcomp, + Title = {On the convergence of discrete approximations to the + {N}avier-{S}tokes equations}, + Author = {Chorin, A.J.}, + Journal = {Mathematics of Computation}, + Year = {1969}, + Pages = {341--353}, + Volume = {23}, + Keywords = {Navier-Stokes} +} + +@Article{ chorin68, + Author = "Chorin, A.~J.", + Title = "{Numerical solution of the Navier-Stokes equations}", + Journal = {Math. Comp.}, + fjournal = {Mathematics of Computation}, + Volume = "22", + Pages = "745--762", + Year = "1968" +} + +###Article{ chorin68, + Author = "Chorin, A.~J.", + Title = "{Numerical solution of the Navier-Stokes equations}", + Journal = {Math. Comp.}, + fjournal = {Mathematics of Computation}, + Volume = "22", + Pages = "745--762", + Year = "1968" +} + +@Article{ chorin69, + Author = "Chorin, A.~J.", + Title = "{On the convergence of discrete approximations of the + Navier-Stokes equations}", + Journal = {Math. Comp.}, + fjournal = {Mathematics of Computation}, + Volume = "23", + Pages = "341--353", + Year = "1969" +} + +###Article{ chorin69, + Author = "Chorin, A.~J.", + Title = "{On the convergence of discrete approximations of the + Navier-Stokes equations}", + Journal = {Math. Comp.}, + fjournal = {Mathematics of Computation}, + Volume = "23", + Pages = "341--353", + Year = "1969" +} + +@Book{ ciarlet, + Editor = {Ciarlet, P.G. and Lions, J.-L.}, + Publisher = {North-Holland}, + Title = {Handbook of Numerical Analysis, Vol. 2, Finite Element + Methods (Part 1)}, + Year = {1991} +} + +###Book{ ciarlet, + Editor = {Ciarlet, P.G. and Lions, J.-L.}, + Publisher = {North-Holland}, + Title = {Handbook of Numerical Analysis, Vol. 2, Finite Element + Methods (Part 1)}, + Year = {1991} +} + +@Book{ ciarlet-02, + Author = {Ciarlet, P.~G.}, + Title = {The finite element method for elliptic problems}, + Series = {Classics in Applied Mathematics}, + Volume = {40}, + Publisher = {Society for Industrial and Applied Mathematics (SIAM)}, + Address = {Philadelphia, PA}, + Year = {2002} +} + +###Book{ ciarlet-02, + Author = {Ciarlet, P.~G.}, + Title = {The finite element method for elliptic problems}, + Series = {Classics in Applied Mathematics}, + Volume = {40}, + Note = {Reprint of the 1978 original [North-Holland, Amsterdam; + MR0520174 (58 \#25001)]}, + Publisher = {Society for Industrial and Applied Mathematics (SIAM)}, + Address = {Philadelphia, PA}, + Year = {2002} +} + +@Book{ ciarlet-88, + Address = {Amsterdam}, + Author = {Ciarlet, P.G.}, + Publisher = {North-Holland Publishing Co.}, + Series = {Studies in Mathematics and its Applications}, + Title = {Mathematical elasticity. {V}ol. {I}}, + Volume = {20}, + Year = {1988} +} + +###Book{ ciarlet-88, + Address = {Amsterdam}, + Author = {Ciarlet, P.G.}, + Publisher = {North-Holland Publishing Co.}, + Series = {Studies in Mathematics and its Applications}, + Title = {Mathematical elasticity. {V}ol. {I}}, + Volume = {20}, + Year = {1988} +} + +@InProceedings{ cimrman-rohan-2003, + Author = {Cimrman, R. and Rohan, E.}, + BookTitle = {Computational Fluid and Solid Mechanics}, + Editor = {K.J. Bathe}, + Publisher = {Elsevier}, + Title = {Modelling heart tissue using a composite muscle model with + blood perfusion}, + Year = {2003} +} + +###InProceedings{ cimrman-rohan-2003, + Author = {Cimrman, R. and Rohan, E.}, + BookTitle = {Computational Fluid and Solid Mechanics}, + Editor = {K.J. Bathe}, + Publisher = {Elsevier}, + Title = {Modelling heart tissue using a composite muscle model with + blood perfusion}, + Year = {2003} +} + +###InProceedings{ cimrman-rohan-2003, + Author = {Cimrman, R. and Rohan, E.}, + BookTitle = {Computational Fluid and Solid Mechanics}, + Editor = {K.J. Bathe}, + Publisher = {Elsevier}, + Title = {Modelling heart tissue using a composite muscle model with + blood perfusion}, + Year = {2003} +} + +###InProceedings{ cimrman-rohan-2003, + Author = {Cimrman, R. and Rohan, E.}, + BookTitle = {Computational Fluid and Solid Mechanics}, + Editor = {K.J. Bathe}, + Publisher = {Elsevier}, + Title = {Modelling heart tissue using a composite muscle model with + blood perfusion}, + Year = {2003} +} + +@Article{ cioffi2011prognostic, + Title = {Prognostic effect of inappropriately high left ventricular + mass in asymptomatic severe aortic stenosis}, + Author = {Cioffi, Giovanni and Faggiano, Pompilio and Vizzardi, + Enrico and Tarantini, Luigi and Cramariuc, Dana and Gerdts, + Eva and De Simone, Giovanni}, + Journal = {Heart}, + Volume = {97}, + Number = {4}, + Pages = {301--307}, + Year = {2011}, + Publisher = {BMJ Publishing Group Ltd and British Cardiovascular + Society} +} + +@Article{ cioffi_prognostic_2011, + Title = {Prognostic Effect of Inappropriately High Left Ventricular + Mass in Asymptomatic Severe Aortic Stenosis}, + Volume = {97}, + Number = {4}, + JournalTitle = {Heart}, + Year = {2011}, + Pages = {301--307}, + Author = {Cioffi, Giovanni and Faggiano, Pompilio and Vizzardi, + Enrico and Tarantini, Luigi and Cramariuc, Dana and Gerdts, + Eva and de Simone, Giovanni}, + Options = {useprefix=true} +} + +@Book{ circulationheartwiki, + Title = {{Circulatory system}}, + Author = {{Wikipedia Encyclopedia}}, + Year = {2011} +} + +###Book{ circulationheartwiki, + Title = {{Circulatory system}}, + Author = {{Wikipedia Encyclopedia}}, + Address = {\url{http://en.wikipedia.org/wiki/Circulatory_system}}, + Year = {2011} +} + +@InProceedings{ cito_sensitivity_2014, + langid = {english}, + Title = {Sensitivity {{Analysis}} of the {{Boundary Conditions}} in + {{Simulations}} of the {{Flow}} in an {{Aortic + Coarctation}} under {{Rest}} and {{Stress Conditions}}}, + ISBN = {978-3-642-54268-8}, + Abstract = {Aortic coarctation is a congenital condition in which the + aorta is narrowed. The pressure drop through the aorta + depends on the extension of this narrowing. Therefore, + severe coarctations have important side-effects on the + hemodynamic conditions of the circulatory system. The + Computational Fluid Dynamics (CFD) simulation of the + hemodynamics in a patient specific aortic coarctation can + help to predict the pressure drop produced by the aorta + narrowing. Nevertheless, an accurate prediction of the + pressure drop, by means of CFD tools, depends strongly on + the boundary conditions (BCs). In this study we present the + results of ten simulations performed on a patient specific + aortic coarctation vasculature proposed in the second + MICCAI-STACOM CFD Challenge. The model includes ascending + aorta, arch, descending aorta, and upper branch vessels. + Specifically, we consider; two different physiological + states a) rest and b) stress condition. For both cases the + flow rate waveforms are provided at the ascending aorta and + descending aorta. The ten simulations are performed using + five different set of boundary conditions. The results are + reported and indications on the more accurate boundary + conditions are discussed.}, + BookTitle = {Statistical {{Atlases}} and {{Computational Models}} of + the {{Heart}}. {{Imaging}} and {{Modelling Challenges}}}, + Series = {Lecture {{Notes}} in {{Computer Science}}}, + Publisher = {{Springer Berlin Heidelberg}}, + Year = {2014}, + Pages = {74-82}, + Author = {Cito, Salvatore and Pallarés, Jordi and Vernet, Anton}, + Editor = {Camara, Oscar and Mansi, Tommaso and Pop, Mihaela and + Rhode, Kawal and Sermesant, Maxime and Young, Alistair} +} + +@Article{ clague-phillips-97, + Annote = {brinkman}, + Author = {Clague, D. S. and Phillips, R. J.}, + code = {por3}, + Journal = {Phys. Fluid}, + Number = {6}, + Pages = {1562-1572}, + Title = {A numerical calculation of the hydraulic permeability of + the three-dimensional disordered fibrous media}, + Volume = {9}, + Year = {1997} +} + +###Article{ clague-phillips-97, + Annote = {brinkman}, + Author = {Clague, D. S. and Phillips, R. J.}, + code = {por3}, + Journal = {Phys. Fluid}, + Number = {6}, + Pages = {1562-1572}, + Title = {A numerical calculation of the hydraulic permeability of + the three-dimensional disordered fibrous media}, + Volume = {9}, + Year = {1997} +} + +@Article{ clark-1976-1, + Author = {Clark, C.}, + Journal = {J. Biomech.}, + Pages = {521-528}, + Title = {The fluid mechanics of the aortic stenosis - {I. Theory} + and steady flow experiments}, + Volume = {9}, + Year = {1976} +} + +###Article{ clark-1976-1, + Author = {Clark, C.}, + Journal = {J. Biomech.}, + Pages = {521-528}, + Title = {The fluid mechanics of the aortic stenosis - {I. Theory} + and steady flow experiments}, + Volume = {9}, + Year = {1976} +} + +@Article{ clark-1976-2, + Author = {Clark, C.}, + Journal = {J. Biomech.}, + Pages = {567-573}, + Title = {The fluid mechanics of the aortic stenosis - {II. + Unsteady} flow experiments}, + Volume = {9}, + Year = {1976} +} + +###Article{ clark-1976-2, + Author = {Clark, C.}, + Journal = {J. Biomech.}, + Pages = {567-573}, + Title = {The fluid mechanics of the aortic stenosis - {II. + Unsteady} flow experiments}, + Volume = {9}, + Year = {1976} +} + +@Article{ clark_energy_1979, + Title = {Energy Losses in Flow through Stenosed Valves}, + Author = {Clark, C.}, + Year = {1979}, + Volume = {12}, + Pages = {737--746}, + Journal = {Journal of biomechanics}, + Number = {10} +} + +@Article{ clayton2011review, + Title = {Models of cardiac tissue electrophysiology: progress, + challenges and open questions}, + Author = {Clayton, RH and Bernus, Olivier and Cherry, EM and + Dierckx, Hans and Fenton, FH and Mirabella, L and Panfilov, + AV and Sachse, FB and Seemann, G and Zhang, H}, + Journal = {Progress in biophysics and molecular biology}, + Volume = {104}, + Number = {1}, + Pages = {22--48}, + Year = {2011}, + Publisher = {Elsevier} +} + +@Article{ clement75, + Author = {Cl{\'e}ment, Ph.}, + Journal = {Rev. Fran{\c c}aise Automat. Informat. Recherche + Op{\'e}rationnelle S{\'e}r. RAIRO Analyse Num{\'e}rique}, + Number = {R-2}, + Pages = {77--84}, + Title = {Approximation by finite element functions using local + regularization}, + Volume = {9}, + Year = {1975} +} + +###Article{ clement75, + Author = {Cl{\'e}ment, Ph.}, + Journal = {Rev. Fran{\c c}aise Automat. Informat. Recherche + Op{\'e}rationnelle S{\'e}r. RAIRO Analyse Num{\'e}rique}, + Number = {R-2}, + Pages = {77--84}, + Title = {Approximation by finite element functions using local + regularization}, + Volume = {9}, + Year = {1975} +} + +@Article{ coffey2015modern, + Title = {The modern epidemiology of heart valve disease}, + Author = {Coffey, S. and Cairns, B. and Iung, B.}, + Journal = {Heart}, + Year = {2015}, + Publisher = {BMJ Publishing Group Ltd and British Cardiovascular + Society} +} + +@Article{ cohen2000circ, + Title = {Favorable Remodeling Enhances Recovery of Regional + Myocardial Function in the Weeks After Infarction in + Ischemically Preconditioned Hearts}, + Author = {Cohen, Michael V. and Yang, Xi-Ming and Neumann, Till and + Heusch, Gerd and Downey, James M.}, + Journal = {Circulation}, + Year = {2000}, + Number = {5}, + Pages = {579-583}, + Volume = {102}, + Abstract = {Background?In a previous study, we found that recovery of + segment shortening in the ischemic zone of conscious, + chronically instrumented rabbits was significantly better + in ischemically preconditioned than control animals after + 72 hours of reperfusion. However, although this period of + reperfusion was felt to be sufficient to allow recovery + from stunning, regional function was disproportionately low + for the size of the infarcts.Methods and Results?To further + characterize the recovery of left ventricular regional + function, rabbits were chronically instrumented with a + balloon occluder around a branch of the left coronary + artery and a pair of ultrasonic crystals to monitor segment + shortening in the ischemic zone. The preconditioned group + had 1 cycle of 5-minute occlusion/10-minute reperfusion + before a 30-minute occlusion, whereas control rabbits + experienced only the 30-minute occlusion. All monitored + segments were either dyskinetic or akinetic during the + 30-minute occlusion. There was no difference in function + between the 2 groups until 24 hours of reperfusion. At 72 + hours, systolic shortening in control hearts averaged only + 5% of the preischemic value, whereas shortening was 29% of + baseline in preconditioned hearts. By day 21, systolic + shortening averaged 26% in control hearts and 65% in + preconditioned hearts (P<0.02) and appeared to have reached + a plateau. Infarct size was 31.4±2.8% and 15.5±2.1% in + control and preconditioned hearts, respectively. Moreover, + in ischemically preconditioned hearts, the recovery of + regional function was better than in controls for any given + amount of microinfarction in the myocardial segment between + crystals (P=0.02).Conclusions?The progressive improvement + in preconditioned hearts is most consistent with favorable + remodeling in the ischemic zone, which the preconditioning + process seems to accentuate.}, + DOI = {10.1161/01.CIR.102.5.579}, + EPrint = {http://circ.ahajournals.org/content/102/5/579.full.pdf+html}, + File = {cohen00.pdf:cohen00.pdf:PDF}, + timestamp = {2015/09/17}, + URL = {http://circ.ahajournals.org/content/102/5/579.abstract} +} + +@Article{ cohn00jacc, + Title = {Cardiac remodeling -- concepts and clinical implications: + a consensus paper from an international forum on cardiac + remodeling}, + Author = {Cohn, Jay N and Ferrari, Roberto and Sharpe, Norman}, + Journal = {Journal of the American College of Cardiology}, + Year = {2000}, + Number = {3}, + Pages = {569--582}, + Volume = {35}, + File = {:cohn00.pdf:PDF}, + Publisher = {Am Coll Cardio Found}, + timestamp = {2014/11/27} +} + +@Book{ constantin, + Author = {Constantin, P. and Foias, C. and Nicolaenko, B. and Temam, + R.}, + Publisher = {Springer-Verlag}, + Title = {Integral manifolds and inertial manifolds for dissipative + partial differential equations}, + Year = {1989} +} + +###Book{ constantin, + Author = {Constantin, P. and Foias, C. and Nicolaenko, B. and Temam, + R.}, + Publisher = {Springer-Verlag}, + Title = {Integral manifolds and inertial manifolds for dissipative + partial differential equations}, + Year = {1989} +} + +@Article{ constantino2013hcp, + Title = {Mechanistic insight into prolonged electromechanical delay + in dyssynchronous heart failure: a computational study}, + Author = {Constantino, J. and Hu, Y. and Lardo, A.C. and Trayanova, + N.A.}, + Journal = {{AJP}: Heart and Circulatory Physiology}, + Year = {2013}, + Month = oct, + Number = {8}, + Pages = {H1265--H1273}, + Volume = {305}, + DOI = {10.1152/ajpheart.00426.2013}, + File = {Constantino2013.pdf:/home/hoermann/.zotero/zotero/krpbc0h6.default/zotero/storage/WU2C5749/Constantino2013.pdf:application/pdf}, + ISSN = {0363-6135, 1522-1539}, + Keywords = {CRT}, + Language = {en}, + ShortTitle = {Mechanistic insight into prolonged electromechanical delay + in dyssynchronous heart failure}, + URL = {http://ajpheart.physiology.org/cgi/doi/10.1152/ajpheart.00426.2013}, + URLDate = {2014-11-27} +} + +@Article{ constantino_computational_2012, + Title = {A computational approach to understanding the cardiac + electromechanical activation sequence in the normal and + failing heart, with translation to the clinical practice of + {CRT}}, + Author = {Constantino, J. and Hu, Y. and Trayanova, N.A.}, + Journal = {Progress in Biophysics and Molecular Biology}, + Year = {2012}, + Month = oct, + Number = {2-3}, + Pages = {372--379}, + Volume = {110}, + DOI = {10.1016/j.pbiomolbio.2012.07.009}, + File = {Constantino_2012.pdf:/home/hoermann/.zotero/zotero/krpbc0h6.default/zotero/storage/FM832U4J/Constantino_2012.pdf:application/pdf}, + ISSN = {00796107}, + Language = {en}, + URL = {http://linkinghub.elsevier.com/retrieve/pii/S0079610712000545}, + URLDate = {2014-11-28} +} + +@Article{ conti_carotid_2016, + Title = {Carotid Artery Hemodynamics before and after Stenting: + {{A}} Patient Specific {{CFD}} Study}, + Volume = {141}, + ShortTitle = {Carotid Artery Hemodynamics before and after Stenting}, + JournalTitle = {Computers \& Fluids}, + Year = {2016}, + Pages = {62--74}, + Author = {Conti, Michele and Long, Chris and Marconi, Michele and + Berchiolli, Raffaella and Bazilevs, Yuri and Reali, + Alessandro} +} + +@Article{ cookson2012jbm, + Title = {A novel porous mechanical framework for modelling the + interaction between coronary perfusion and myocardial + mechanics}, + Author = {Cookson, A.N. and Lee, J. and Michler, C. and Chabiniok, + R. and Hyde, E. and Nordsletten, D.A. and Sinclair, M. and + Siebes, M. and Smith, N.P.}, + Journal = {Journal of Biomechanics}, + Year = {2012}, + Month = {Mar}, + Number = {5}, + Pages = {850--855}, + Volume = {45}, + DOI = {10.1016/j.jbiomech.2011.11.026}, + File = {:Cookson2012JBM.pdf:PDF}, + ISSN = {0021-9290}, + Keywords = {perfusion, FSI, heart}, + Publisher = {Elsevier BV}, + URL = {http://dx.doi.org/10.1016/j.jbiomech.2011.11.026} +} + +@Book{ coron2007control, + Author = {Coron, J.M.}, + ISBN = {9780821836682}, + lccn = {2006048031}, + Publisher = {American Mathematical Society}, + Series = {Mathematical surveys and monographs}, + Title = {Control and nonlinearity}, + Year = {2007} +} + +###Book{ coron2007control, + Author = {Coron, J.M.}, + ISBN = {9780821836682}, + lccn = {2006048031}, + Publisher = {American Mathematical Society}, + Series = {Mathematical surveys and monographs}, + Title = {Control and nonlinearity}, + URL = {http://books.google.com.pe/books?id=aEKv1bpcrKQC}, + Year = {2007}, + bdsk-url-1 = {http://books.google.com.pe/books?id=aEKv1bpcrKQC} +} + +@article{corrado2015identification, + title={Identification of weakly coupled multiphysics problems. Application to the inverse problem of electrocardiography}, + author={Corrado, Cesare and Gerbeau, Jean-Fr{\'e}d{\'e}ric and Moireau, Philippe}, + journal={Journal of Computational Physics}, + volume={283}, + pages={271--298}, + year={2015}, + publisher={Elsevier} +} + +@TechReport{ coulaud-94, + Annote = {mhd, free surface, asymptotic method, high frequencies, + metal forming}, + Author = {Coulaud, O.}, + code = {mhd35}, + Institution = {INRIA RR-2407}, + Title = {Mod{\'e}lisation haute fr{\'e}quence en + magn{\'e}tohydrodynamique: aspect magn{\'e}tique}, + Year = {1994} +} + +###TechReport{ coulaud-94, + Annote = {mhd, free surface, asymptotic method, high frequencies, + metal forming}, + Author = {Coulaud, O.}, + code = {mhd35}, + Institution = {INRIA RR-2407}, + Title = {Mod{\'e}lisation haute fr{\'e}quence en + magn{\'e}tohydrodynamique: aspect magn{\'e}tique}, + Year = {1994} +} + +@Article{ coulaud-henrot-94, + Annote = {mhd, free surface, metal forming}, + Author = {Coulaud, O. and Henrot, A.}, + code = {mhd34}, + Journal = {SIAM J. Numer. Anal.}, + Number = {4}, + Pages = {1109-1127}, + Title = {Numerical approximation of a free boundary problem arising + in electromagnetic shaping}, + Volume = {31}, + Year = {1994} +} + +###Article{ coulaud-henrot-94, + Annote = {mhd, free surface, metal forming}, + Author = {Coulaud, O. and Henrot, A.}, + code = {mhd34}, + Journal = {SIAM J. Numer. Anal.}, + Number = {4}, + Pages = {1109-1127}, + Title = {Numerical approximation of a free boundary problem arising + in electromagnetic shaping}, + Volume = {31}, + Year = {1994} +} + +@Book{ cover2012inftheory, + Title = {Elements of information theory}, + Author = {Cover, Thomas M and Thomas, Joy A}, + Publisher = {John Wiley \& Sons}, + Year = {2012} +} + +@InProceedings{ crelier_rapid_2011, + Title = {Rapid Relative Pressure Map Computation from + Velocity-Encoded Phase-Contrast Measurements}, + BookTitle = {{{ISMRM}} 19th {{Annual Meeting}} \& {{Exhibition}}}, + Author = {Crelier, Gerard R. and Brunner, D. and Kozerke, Sebastian + and Boesiger, Peter}, + Year = {2011}, + Publisher = {{International Society for Magnetic Resonance in Medicine + (ISMRM)}} +} + +@Book{ curtain1995introduction, + Author = {Curtain, R.F. and Zwart, H.J.}, + ISBN = {9780387944753}, + lccn = {95005549}, + Publisher = {Springer-Verlag}, + Series = {Texts in applied mathematics}, + Title = {An introduction to infinite-dimensional linear systems + theory}, + Year = {1995} +} + +###Book{ curtain1995introduction, + Author = {Curtain, R.F. and Zwart, H.J.}, + ISBN = {9780387944753}, + lccn = {95005549}, + Publisher = {Springer-Verlag}, + Series = {Texts in applied mathematics}, + Title = {An introduction to infinite-dimensional linear systems + theory}, + URL = {http://books.google.com/books?id=G\_x-F-l2V2UC}, + Year = {1995}, + bdsk-url-1 = {http://books.google.com/books?id=G%5C_x-F-l2V2UC} +} + +@Book{ cvphysiology, + Title = {{Cardiovascular Physiology Concepts}}, + Author = {Klabunde, R.}, + Year = {2011} +} + +###Book{ cvphysiology, + Title = {{Cardiovascular Physiology Concepts}}, + Author = {Klabunde, R.}, + Address = {\url{http://www.cvphysiology.com}}, + Year = {2011} +} + +@Article{ cyron2014ijes, + Title = {Vascular homeostasis and the concept of mechanobiological + stability }, + Author = {C.J. Cyron and J.D. Humphrey}, + Journal = {International Journal of Engineering Science }, + Year = {2014}, + Pages = {203 - 223}, + Volume = {85}, + Abstract = {Abstract Vascular mechanics has been studied in depth + since the early 1970s mainly following classical concepts + from continuum mechanics. Yet, an important distinction of + blood vessels, in contrast to typical engineering + materials, is the continuous degradation and deposition of + material in these living tissues. In this paper we examine + mechanical consequences of such mass turnover. Motivated by + Lyapunov?s stability theory, we introduce the new concepts + of mechanobiological equilibrium and stability and + demonstrate that blood vessels can maintain their structure + and function under physiological conditions only if new + material is deposited at a certain prestress and the + vessels are both mechanically and mechanobiologically + stable. Moreover, we introduce the concept of + mechanobiological adaptivity as a third corner stone to + understand vascular behavior on a continuum level. We + demonstrate that adaptivity represents a key difference + between the stability of mechanobiological and typical + human-made systems. Based on these ideas, we suggest a + change of paradigm that can be illustrated by considering a + common arterial pathology. We suggest that aneurysms can be + interpreted as mechanobiological instabilities and that + predictions of their rupture risk should not only consider + the maximal diameter or wall stress, but also the + mechanobiological stability. A mathematical analysis of the + impact of the different model parameters on the so-called + mechanobiological stability margin, a single scalar used to + characterize mechanobiological stability, reveals that this + stability increases with the characteristic time constant + of mass turnover, material stiffness, and capacity for + stress-dependent changes in mass production. As each of + these parameters may be modified by appropriate drugs, the + theory developed in this paper may guide both prognosis and + the development of new therapies for arterial pathologies + such as aneurysms. }, + DOI = {http://dx.doi.org/10.1016/j.ijengsci.2014.08.003}, + ISSN = {0020-7225}, + Keywords = {Growth}, + timestamp = {2015/09/22}, + URL = {http://www.sciencedirect.com/science/article/pii/S002072251400175X} +} + +@Article{ cyron2014rsoc, + Title = {Mechanobiological stability: a new paradigm to understand + the enlargement of aneurysms?}, + Author = {Cyron, C. J. and Wilson, J. S. and Humphrey, J. D.}, + Journal = {Journal of The Royal Society Interface}, + Year = {2014}, + Number = {100}, + Volume = {11}, + Abstract = {Static and dynamic mechanical instabilities were + previously suggested, and then rejected, as mediators of + aneurysmal development, which leaves open the question of + the underlying mechanism. In this paper, we suggest as a + new paradigm the interpretation of aneurysms as + mechanobiological instabilities. For illustrative purposes, + we compare analytical calculations with computational + simulations of the growth and remodelling of idealized + fusiform abdominal aortic aneurysms and experimental and + clinical findings. We show that the concept of + mechanobiological stability is consistent with the impact + of risk factors such as age, smoking or diabetes on the + initiation and enlargement of these lesions as well as + adaptive processes in the healthy abdominal aorta such as + dilatation during ageing or in hypertension. In general, + high stiffness, an increased capacity for stress-mediated + matrix production, and slow matrix turnover all improve the + mechanobiological stability of blood vessels. This + theoretical understanding may help guide prognosis and the + development of future therapies for aneurysms as it enables + systematic ways to attenuate enlargement.}, + DOI = {10.1098/rsif.2014.0680}, + ISSN = {1742-5689}, + Publisher = {The Royal Society}, + timestamp = {2015/09/22} +} + +@Misc{ d2010valvular, + Title = {Valvular heart disease: the next cardiac epidemic}, + Author = {d'Arcy, JL and Prendergast, BD and Chambers, JB and Ray, + SG and Bridgewater, B}, + Year = {2010}, + Publisher = {BMJ Publishing Group Ltd} +} + +@Book{ dafermos-00, + Address = {Berlin}, + Author = {Dafermos, C. M.}, + Publisher = {Springer-Verlag}, + Title = {Hyperbolic conservation laws in continuum physics}, + Volume = {GM 325}, + Year = {2000} +} + +###Book{ dafermos-00, + Address = {Berlin}, + Author = {Dafermos, C. M.}, + Publisher = {Springer-Verlag}, + Title = {Hyperbolic conservation laws in continuum physics}, + Volume = {GM 325}, + Year = {2000} +} + +@Article{ daskalopoulos2012mimi, + Title = {Myofibroblasts in the infarct area: concepts and + challenges}, + Author = {Daskalopoulos, Evangelos P and Janssen, Ben JA and + Blankesteijn, W Matthijs}, + Journal = {Microscopy and Microanalysis}, + Year = {2012}, + Number = {01}, + Pages = {35--49}, + Volume = {18}, + File = {:daskalopoulos12.pdf:PDF}, + Publisher = {Cambridge Univ Press}, + timestamp = {2014/09/17} +} + +@Book{ dautray, + Author = {Dautray, R. and Lions, J.-L.}, + Publisher = {Masson}, + Title = {Analyse math{\'e}matique et calcul num{\'e}rique pour les + sciences et les techniques}, + Volume = {2}, + Year = {1987} +} + +###Book{ dautray, + Author = {Dautray, R. and Lions, J.-L.}, + Publisher = {Masson}, + Title = {Analyse math{\'e}matique et calcul num{\'e}rique pour les + sciences et les techniques}, + Volume = {2}, + Year = {1987} +} + +@Article{ davidson-lindsay-98, + Annote = {mhd, aluminium}, + Author = {Davidson, P.A and Lindsay, R.I.}, + Journal = {J. Fluid Mech.}, + Pages = {273--295}, + Title = {Stability of interfacial waves in aluminium reduction + cells}, + Volume = {362}, + Year = {1998} +} + +###Article{ davidson-lindsay-98, + Annote = {mhd, aluminium}, + Author = {Davidson, P.A and Lindsay, R.I.}, + Journal = {J. Fluid Mech.}, + Pages = {273--295}, + Title = {Stability of interfacial waves in aluminium reduction + cells}, + Volume = {362}, + Year = {1998} +} + +@InProceedings{ de_hoon_4d_2014, + Title = {{{4D MRI}} Flow Coupled to Physics-Based Fluid Simulation + for Blood-Flow Visualization}, + Volume = {33}, + BookTitle = {Computer {{Graphics Forum}}}, + Publisher = {{Wiley Online Library}}, + Year = {2014}, + Pages = {121--130}, + Author = {de Hoon, NHLC and van Pelt, Roy and Jalba, A. and + Vilanova, Anna}, + Options = {useprefix=true} +} + +@Article{ degroff-2000, + Author = {DeGroff, C.G. and Shandas, R. and Valdes-Cruz, L.}, + Journal = {Eur J Echocardiography}, + Pages = {42--54}, + Title = {Utility of the Proximal Jet Width in the Assessment of + Regurgitant and Stenotic Orifices - Effect of Low Velocity + Filter and Comparison to Actual Vena Contracta Width: an + {\em In Vitro} and Numerical Study}, + Volume = {1}, + Year = {2000} +} + +###Article{ degroff-2000, + Author = {DeGroff, C.G. and Shandas, R. and Valdes-Cruz, L.}, + Journal = {Eur J Echocardiography}, + Pages = {42--54}, + Title = {Utility of the Proximal Jet Width in the Assessment of + Regurgitant and Stenotic Orifices - Effect of Low Velocity + Filter and Comparison to Actual Vena Contracta Width: an + {\em In Vitro} and Numerical Study}, + Volume = {1}, + Year = {2000} +} + +@Article{ dehart-2003, + Author = {De Hart, J. and Peters, G.W.M. and Schreurs, P.J.G. and + Baaijens, F.P.T.}, + Journal = {Journal of Biomechanics}, + Pages = {103--112}, + Title = {A three-dimensional computational analysis of + fluid-structure interaction in the aortic valve}, + Volume = {36}, + Year = {2003} +} + +###Article{ dehart-2003, + Author = {De Hart, J. and Peters, G.W.M. and Schreurs, P.J.G. and + Baaijens, F.P.T.}, + Journal = {Journal of Biomechanics}, + Pages = {103--112}, + Title = {A three-dimensional computational analysis of + fluid-structure interaction in the aortic valve}, + Volume = {36}, + Year = {2003} +} + +@Article{ dekorte-hansen-steen-11, + Author = {de Korte, Chris L. and Hansen, Hendrik H. G. and van der + Steen, Anton F. W.}, + Title = {Vascular ultrasound for atherosclerosis imaging}, + Volume = {1}, + Number = {4}, + Pages = {565-575}, + Year = {2011}, + DOI = {10.1098/rsfs.2011.0024}, + Abstract = {Cardiovascular disease is a leading cause of death in the + Western world. Therefore, detection and quantification of + atherosclerotic disease is of paramount importance to + monitor treatment and possible prevention of acute events. + Vascular ultrasound is an excellent technique to assess the + geometry of vessel walls and plaques. The high temporal as + well as spatial resolution allows quantification of luminal + area and plaque size and volume. While carotid arteries can + be imaged non-invasively, scanning of coronary arteries + requires invasive intravascular catheters. Both techniques + have already demonstrated their clinical applicability. + Using linear array technology, detection of disease as well + as monitoring of pharmaceutical treatment in carotid + arteries are feasible. Data acquired with intravascular + ultrasound catheters have proved to be especially + beneficial in understanding the development of + atherosclerotic disease in coronary arteries. With the + introduction of vascular elastography not only the geometry + of plaques but also the risk for rupture of plaques might + be identified. These so-called vulnerable plaques are + frequently not flow-limiting and rupture of these plaques + is responsible for the majority of cerebral and cardiac + ischaemic events. Intravascular ultrasound elastography + studies have demonstrated a high correlation between high + strain and vulnerable plaque features, both ex vivo and in + vivo. Additionally, pharmaceutical intervention could be + monitored using this technique. Non-invasive vascular + elastography has recently been developed for carotid + applications by using compound scanning. Validation and + initial clinical evaluation is currently being performed. + Since abundance of vasa vasorum (VV) is correlated with + vulnerable plaque development, quantification of VV might + be a unique tool to even prevent this from happening. Using + ultrasound contrast agents, it has been demonstrated that + VV can be identified and quantified. Although far from + routine clinical application, non-invasive and + intravascular ultrasound VV imaging might pave the road to + prevent atherosclerotic disease in an early phase. This + paper reviews the conventional vascular ultrasound + techniques as well as vascular ultrasound strain and + vascular ultrasound VV imaging.}, + Journal = {Interface Focus} +} + +###Article{ dekorte-hansen-steen-11, + Author = {de Korte, Chris L. and Hansen, Hendrik H. G. and van der + Steen, Anton F. W.}, + Title = {Vascular ultrasound for atherosclerosis imaging}, + Volume = {1}, + Number = {4}, + Pages = {565-575}, + Year = {2011}, + DOI = {10.1098/rsfs.2011.0024}, + Abstract = {Cardiovascular disease is a leading cause of death in the + Western world. Therefore, detection and quantification of + atherosclerotic disease is of paramount importance to + monitor treatment and possible prevention of acute events. + Vascular ultrasound is an excellent technique to assess the + geometry of vessel walls and plaques. The high temporal as + well as spatial resolution allows quantification of luminal + area and plaque size and volume. While carotid arteries can + be imaged non-invasively, scanning of coronary arteries + requires invasive intravascular catheters. Both techniques + have already demonstrated their clinical applicability. + Using linear array technology, detection of disease as well + as monitoring of pharmaceutical treatment in carotid + arteries are feasible. Data acquired with intravascular + ultrasound catheters have proved to be especially + beneficial in understanding the development of + atherosclerotic disease in coronary arteries. With the + introduction of vascular elastography not only the geometry + of plaques but also the risk for rupture of plaques might + be identified. These so-called vulnerable plaques are + frequently not flow-limiting and rupture of these plaques + is responsible for the majority of cerebral and cardiac + ischaemic events. Intravascular ultrasound elastography + studies have demonstrated a high correlation between high + strain and vulnerable plaque features, both ex vivo and in + vivo. Additionally, pharmaceutical intervention could be + monitored using this technique. Non-invasive vascular + elastography has recently been developed for carotid + applications by using compound scanning. Validation and + initial clinical evaluation is currently being performed. + Since abundance of vasa vasorum (VV) is correlated with + vulnerable plaque development, quantification of VV might + be a unique tool to even prevent this from happening. Using + ultrasound contrast agents, it has been demonstrated that + VV can be identified and quantified. Although far from + routine clinical application, non-invasive and + intravascular ultrasound VV imaging might pave the road to + prevent atherosclerotic disease in an early phase. This + paper reviews the conventional vascular ultrasound + techniques as well as vascular ultrasound strain and + vascular ultrasound VV imaging.}, + URL = {http://rsfs.royalsocietypublishing.org/content/1/4/565.abstract}, + EPrint = {http://rsfs.royalsocietypublishing.org/content/1/4/565.full.pdf+html}, + Journal = {Interface Focus} +} + +@Article{ delattre2012ir, + Title = {In Vivo and Cardiac Diffusion-Weighted and Magnetic + Resonance and Imaging}, + Author = {Delattre, Benedicte and Viallon, Magalie and Wei, + Hongjiang and Zhu, Yuemin and Feiweier, Thorsten and Pai, + Vinay and Wen, Han and Croisille, Pierre}, + Journal = {Investigative Radiology}, + Year = {2012}, + Number = {11}, + Volume = {47}, + File = {:Delattre2012IR.pdf:PDF}, + Keywords = {IVIM, heart}, + review = {ORIGINAL ARTICLE + + In Vivo Cardiac Diffusion-Weighted Magnetic Resonance + Imaging Quantification of Normal Perfusion and Diffusion + Coefficients With + + Intravoxel Incoherent Motion Imaging + + Benedicte M.A. Delattre, PhD,* Magalie Viallon, PhD,Þ + Hongjiang Wei, MSc,* Yuemin M. Zhu, PhD,* Thorsten + Feiweier, PhD,þ Vinay M. Pai, PhD,§ Han Wen, PhD,§ and + Pierre Croisille, MD, PhD*|| + + image postprocessing with the PCATMIP algorithm. This study + provides new Objectives: Diffusion-weighted imaging (DWI) + and the introduction of the perspectives for perfusion + imaging without a contrast agent and demonstrates + intravoxel incoherent motion (IVIM) model have provided a + unique method that IVIM parameters can act as promising + tools to further characterize micro- for evaluating + perfusion and diffusion within a tissue without the need + for vascular abnormalities or dysfunction. a contrast + agent. Despite its relevance, cardiac DWI has thus far been + limited by low b values because of signal loss induced by + physiological motion. The Key Words: diffusion-weighted + imaging, heart, IVIM, PCA, goal of this study was to + develop a methodology for estimating IVIM para- temporal + MIP, in vivo meters of in vivo cardiac magnetic resonance + imaging using an efficient DWI + + (Invest Radiol 2012;47: 662Y670) acquisition framework. + This was achieved by investigating various acquisi- tion + strategies (principal component analysis [PCA] filtering + and temporal maximum intensity projection [PCATMIP] and + single trigger delay [TD]) and fitting methods. D + + iffusion-weighted imaging (DWI) has been demonstrated over + the last 2 decades to be a unique method for gaining access + to + + Material and Methods: Simulations were performed on a + synthetic dataset the structural and physiological + characteristics of tissues. It has been + + of diffusion-weighted signal intensity (SI) to determine + the fitting method extensively developed for applications + in the brain, notably for its + + that would yield IVIM parameters with the greatest + accuracy. The required ability to detect stroke earlier + than other conventional magnetic res- + + number of onance sequences can. 1 It is also largely used + in neurological pathol- + + b values to correctly estimate IVIM parameters was also + investigat- ed. Breath-hold DWI scans were performed for 12 + volunteers to collect several ogies, where fiber + architecture is assessed using diffusion tensor + + TD values during diastole. Thirteen imaging. 2 Moreover, + the introduction of the intravoxel incoherent + + b values ranging from 0 to 550 s/mm2 + + were used. The IVIM parameters derived using the data from + all the acquired motion (IVIM) model by Le Bihan et al 3 + gave rise to the ability to as- + + TDs (PCATMIP technique) were compared with those derived + using a single sess tissue perfusion and diffusion + parameters without the need for a + + acquisition performed at an optimized diastolic time point + (1TD). contrast agent. Indeed, signal loss in DWI is + affected by mobile water molecules that are present in both + the intracellular and extracellular + + Results: The main result of this study was that PCATMIP, + when combined with a fitting model that accounted for T1 + and T2 relaxation, provided IVIM compartments, as well as + in blood flowing in capillaries and vessels. + + parameters with less variability. However, an acquisition + performed with This model is therefore of wide interest for + nonneurologic patholo- + + 1 optimized diastolic TD provided results that were as good + as those provided gies. For example, this technique has + been used to assess the differen- + + using PCATMIP if the R-R variability during the acquisition + was sufficiently tiation state of lesions in the liver, 4 + kidney,5 and pancreas6 and also to + + low ( characterize cirrhosis. 7,8 Whereas the acquisition + strategy is similar + + T5%). Furthermore, the use of only 9 b values (that could + be acquired in 2 breath-holds), instead of 13 for abdominal + organ applications, the data modeling and fitting meth-b + values (requiring 3 breath-holds), was suffi- cient to + determine the IVIM parameters. ods vary considerably from + one study to another. Recently, Lemke + + Conclusions: This study demonstrates that IVIM is + technically feasible invivo and et al 9 proposed a + refinement of the DWI signal model proposed by + + reports for the first time the perfusion fraction, Le Bihan + et al 3 that includes the T1 and T2 relaxation parameters + + f, and the diffusion coefficients, D and of the blood and + tissue as well as the echo time (TE)/repetition timeD*, for + the cardiac DWI of healthy volunteers. Motion-induced + signal loss, which is the main problem associated with + cardiac DWI, could be avoided (TR) sequence parameters and + thus represents a new approach to + + with the combined use of sliding acquisition during the + cardiac cycle and data postprocessing. Thus far, however, + very few studies have investigated cardiac + + DWI, and the only study that evaluated cardiac perfusion + and diffu- sion parameters in vivo using IVIM was performed + in the canine heart.10 In fact, cardiac DWI is very + challenging because cardiac mo- + + Received November 18, 2011; and accepted for publication, + after revision, tion can induce a large signal loss that, + until now, has limited diffusion June 25, 2012. weighting + to low b values. Therefore, strategies must be developed + + From the *CREATIS; CNRS (UMR 5220); INSERM (U1044); INSA + Lyon; Uni- versiteŽ de Lyon, Lyon, France; ?Department of + Radiology, University Hospitals to minimize physiological + motion during acquisition and to sep- of Geneva, Geneva, + Switzerland; ?Siemens AG, Healthcare Sector, Erlangen, + arate signal loss due to motion from that due to diffusion. + Recently, Germany; §Imaging Physics Laboratory, + Biochemistry and Biophysics Core, Rapacchi et al11 proposed + a method to obtain cardiac DWI in which National Heart, + Lung and Blood Institute, National Institutes of Health, + motion-induced signal loss was minimized by PCA filtering + and tem- Bethesda, MD; and ||Department of Radiology, + Ho?pital Nord, CHU Saint- Etienne, UniversiteŽ + Jean-Monnet, France. poral maximum intensity projection + (PCATMIP) techniques. These + + Conflicts of interest and sources of funding: Y. Zhu, P. + Croisille, and B.M.A. acquisitions were performed while the + subject was freely breathing Delattre received support from + French ANR grant. T. Feiweier is employed and therefore + necessitated a coregistration of the images before any by + Siemens AG. additional analysis. However, other potential + strategies include the + + Supplemental digital contents are available for this + article. Direct URL citations appear in the printed text + and are provided in the HTML and PDF versions of this use + of respiratory triggering (PACE) + + 12 or breath-holds. As a result, article on the journal?s + Web site (www.investigativeradiology.com). the method of + choice could be aligned to the technique that provides + + Reprints: Pierre Croisille, MD, PhD, Service de Radiologie, + CHU Ho?pital Nord, the most accurate perfusion and + diffusion parameters. In this study, Avenue Albert Raimond, + 42270 Saint-Priest en Jarez, France. E-mail: croisille@ we + have chosen to acquire data during subject breath-holds to + avoid creatis.insa-lyon.fr. + + Copyright * 2012 by Lippincott Williams & Wilkins the + potential source of signal variability resulting from the + coregis- ISSN: 0020-9996/12/4711Y0662 tration step. We + compared the IVIM parameters obtained at a single + + 662 www.investigativeradiology.com Investigative Radiology + & Volume 47, Number 11, November 2012 + + Copyright © 2012 Lippincott Williams & Wilkins. + Unauthorized reproduction of this article is prohibited.} +} + +@PhdThesis{ delfino-96, + Annote = {hemodynamics, vessel wall, constitutive law}, + Author = {Delfino, A.}, + code = {hemo}, + School = {Ecole Polytechnique F{\'e}d{\'e}rale de Lausanne}, + Title = {Analysis of stress field in a model of the human carotid + bifurcation}, + Year = {1996} +} + +###PhdThesis{ delfino-96, + Annote = {hemodynamics, vessel wall, constitutive law}, + Author = {Delfino, A.}, + code = {hemo}, + School = {Ecole Polytechnique F{\'e}d{\'e}rale de Lausanne}, + Title = {Analysis of stress field in a model of the human carotid + bifurcation}, + Year = {1996} +} + +@TechReport{ delia-mirabella-veneziani-11, + Author = {{D'Elia}, M. and Mirabella, L. and Passerini, T. and + Perego, M. and Piccinelli, M. and Vergara, C. and + Veneziani, A.}, + Title = {Applications of Variational Data Assimilation in + Computational Hemodynamics}, + Institution = {Emory University}, + Year = 2011, + Number = {TR-2011-002} +} + +###TechReport{ delia-mirabella-veneziani-11, + Author = {{D'Elia}, M. and Mirabella, L. and Passerini, T. and + Perego, M. and Piccinelli, M. and Vergara, C. and + Veneziani, A.}, + Title = {Applications of Variational Data Assimilation in + Computational Hemodynamics}, + Institution = {Emory University}, + Year = 2011, + Number = {TR-2011-002} +} + +@Article{ delia-perego-veneziani-11, + Title = {A variational data assimilation procedure for the + incompressible Navier-Stokes equations in hemodynamics}, + Author = {D\'{}Elia, M. and Perego, M. and Veneziani, A.}, + Journal = {Journal of Scientific Computing}, + Pages = {1--20}, + Year = {2011}, + Publisher = {Springer} +} + +###Article{ delia-perego-veneziani-11, + Title = {A variational data assimilation procedure for the + incompressible Navier-Stokes equations in hemodynamics}, + Author = {D\'{}Elia, M. and Perego, M. and Veneziani, A.}, + Journal = {Journal of Scientific Computing}, + Pages = {1--20}, + Year = {2011}, + Publisher = {Springer} +} + +@Article{ delia2012variational, + Title = {A variational data assimilation procedure for the + incompressible Navier-Stokes equations in hemodynamics}, + Author = {D'Elia, Marta and Perego, Mauro and Veneziani, + Alessandro}, + Journal = {Journal of Scientific Computing}, + Volume = {52}, + Number = {2}, + Pages = {340--359}, + Year = {2012}, + Publisher = {Springer} +} + +@Article{ delia2013uncertainty, + Title = {Uncertainty quantification for data assimilation in a + steady incompressible Navier-Stokes problem}, + Author = {D'Elia, Marta and Veneziani, Alessandro}, + Journal = {ESAIM: Mathematical Modelling and Numerical Analysis}, + Volume = {47}, + Number = {4}, + Pages = {1037--1057}, + Year = {2013}, + Publisher = {EDP Sciences} +} + +###Article{ delia2013uncertainty, + Title = {Uncertainty quantification for data assimilation in a + steady incompressible Navier-Stokes problem}, + Author = {D’Elia, Marta and Veneziani, Alessandro}, + Journal = {ESAIM: Mathematical Modelling and Numerical Analysis}, + Volume = {47}, + Number = {4}, + Pages = {1037--1057}, + Year = {2013}, + Publisher = {EDP Sciences} +} + +@Article{ delia_uncertainty_2013, + Title = {Uncertainty Quantification for Data Assimilation in a + Steady Incompressible {{Navier}}-{{Stokes}} Problem}, + Volume = {47}, + URL = {http://www.esaim-m2an.org/articles/m2an/abs/2013/04/m2an120056/m2an120056.html}, + Number = {4}, + JournalTitle = {ESAIM: Mathematical Modelling and Numerical Analysis}, + URLDate = {2016-11-18}, + Year = {2013}, + Pages = {1037--1057}, + Author = {D'Elia, Marta and Veneziani, Alessandro} +} + +@Article{ delia_variational_2012, + langid = {english}, + Title = {A {{Variational Data Assimilation Procedure}} for the + {{Incompressible Navier}}-{{Stokes Equations}} in + {{Hemodynamics}}}, + Volume = {52}, + ISSN = {0885-7474, 1573-7691}, + URL = {http://link.springer.com/10.1007/s10915-011-9547-6}, + DOI = {10.1007/s10915-011-9547-6}, + Number = {2}, + JournalTitle = {Journal of Scientific Computing}, + URLDate = {2016-11-21}, + Year = {2012-08}, + Pages = {340-359}, + Author = {D'Elia, Marta and Perego, Mauro and Veneziani, + Alessandro} +} + +@InProceedings{ delles_influence_2010, + Title = {Influence of Imaging Quality on Magnetic Resonance-Based + Pressure Gradient Measurements}, + BookTitle = {Medical {{Imaging}} 2010: {{Biomedical Applications}} in + {{Molecular}}, {{Structural}}, and {{Functional Imaging}}}, + Author = {Delles, Michael and Rengier, Fabian and Ley, Sebastian and + von {Tengg-Kobligk}, Hendrik and Kauczor, Hans-Ulrich and + Unterhinninghofen, Roland and Dillmann, R{\"u}diger}, + Year = {2010}, + Month = mar, + Volume = {7626}, + Pages = {762624}, + Publisher = {{International Society for Optics and Photonics}}, + DOI = {10.1117/12.844160}, + Abstract = {In cardiovascular diagnostics, the knowledge of blood + pressure is essential for the physician. Nowadays, blood + pressures are usually obtained by catheter measurements or + sphygmomanometric methods. These techniques suffer from + different drawbacks in terms of invasiveness, observable + vessels and the resolution of the pressure values, + respectively. Magnetic resonance imaging (MRI) offers a + promising approach to establish a method for blood pressure + measurements that is able to overcome these difficulties. + Phase-contrast MRI is used to acquire velocity-encoded + data. Fluid pressure gradients can be derived from the + measured velocities using the Navier-Stokes equations. + Unfortunately, this technique is known to suffer from a + strong sensitivity to imaging quality. Especially the low + signal-to-noise ratios (SNR) of phase contrast MRI data + combined with the limited spatial and temporal resolution + could severely reduce the reliability of computations. In + this paper, we analyze computations of blood pressure + gradients based on phase contrast MRI measurements of + steady and pulsatile flow in a phantom. The influence of + image quality of the velocity-encoded data as well as of + different segmentation techniques is evaluated. In case of + steady flow, the pressure gradient values computed via + Navier-Stokes equations show good agreement with + theoretical values if physical a-priori knowledge is + incorporated. If a pulsatile aortic flow profile is + applied, the computed pressure gradients generally match + catheter measurements well. Nevertheless, an + underestimation of pressure gradient peaks is observed. + Different segmentation techniques influence the size of + root mean squared errors between computation and + measurement as well as their reduction by the use of higher + SNRs.} +} + +@InProceedings{ delles_influence_2010-1, + Title = {Influence of Imaging Quality on Magnetic Resonance-Based + Pressure Gradient Measurements}, + Volume = {7626}, + URL = {https://www.spiedigitallibrary.org/conference-proceedings-of-spie/7626/762624/Influence-of-imaging-quality-on-magnetic-resonance-based-pressure-gradient/10.1117/12.844160.short}, + DOI = {10.1117/12.844160}, + Abstract = {In cardiovascular diagnostics, the knowledge of blood + pressure is essential for the physician. Nowadays, blood + pressures are usually obtained by catheter measurements or + sphygmomanometric methods. These techniques suffer from + different drawbacks in terms of invasiveness, observable + vessels and the resolution of the pressure values, + respectively. Magnetic resonance imaging (MRI) offers a + promising approach to establish a method for blood pressure + measurements that is able to overcome these difficulties. + Phase-contrast MRI is used to acquire velocity-encoded + data. Fluid pressure gradients can be derived from the + measured velocities using the Navier-Stokes equations. + Unfortunately, this technique is known to suffer from a + strong sensitivity to imaging quality. Especially the low + signal-to-noise ratios (SNR) of phase contrast MRI data + combined with the limited spatial and temporal resolution + could severely reduce the reliability of computations. In + this paper, we analyze computations of blood pressure + gradients based on phase contrast MRI measurements of + steady and pulsatile flow in a phantom. The influence of + image quality of the velocity-encoded data as well as of + different segmentation techniques is evaluated. In case of + steady flow, the pressure gradient values computed via + Navier-Stokes equations show good agreement with + theoretical values if physical a-priori knowledge is + incorporated. If a pulsatile aortic flow profile is + applied, the computed pressure gradients generally match + catheter measurements well. Nevertheless, an + underestimation of pressure gradient peaks is observed. + Different segmentation techniques influence the size of + root mean squared errors between computation and + measurement as well as their reduction by the use of higher + SNRs.}, + EventTitle = {Medical {{Imaging}} 2010: {{Biomedical Applications}} in + {{Molecular}}, {{Structural}}, and {{Functional Imaging}}}, + BookTitle = {Medical {{Imaging}} 2010: {{Biomedical Applications}} in + {{Molecular}}, {{Structural}}, and {{Functional Imaging}}}, + Publisher = {{International Society for Optics and Photonics}}, + URLDate = {2019-03-01}, + Year = {2010-03-09}, + Pages = {762624}, + Author = {Delles, Michael and Rengier, Fabian and Ley, Sebastian and + von Tengg-Kobligk, Hendrik and Kauczor, Hans-Ulrich and + Unterhinninghofen, Roland and Dillmann, Rüdiger} +} + +@PhdThesis{ delmas-81, + Annote = {mhd, interface}, + Author = {Delmas, M.}, + code = {mhd32}, + School = {Universit{\'e} Paris-Sud}, + Title = {Probl{\`e}me magn{\'e}tohydrodynamique li{\'e}s {\`a} + l'interface de deux fluides}, + Year = {1981} +} + +###PhdThesis{ delmas-81, + Annote = {mhd, interface}, + Author = {Delmas, M.}, + code = {mhd32}, + School = {Universit{\'e} Paris-Sud}, + Title = {Probl{\`e}me magn{\'e}tohydrodynamique li{\'e}s {\`a} + l'interface de deux fluides}, + Year = {1981} +} + +@Article{ denisova, + Author = {Denisova, I.V.}, + Journal = {Acta Applicandae Mathematicae}, + Pages = {31-40}, + Title = {Problem of the motion of two viscous incompressible fluids + separated by a closed free interface}, + Volume = {37}, + Year = {1994} +} + +###Article{ denisova, + Author = {Denisova, I.V.}, + Journal = {Acta Applicandae Mathematicae}, + Pages = {31-40}, + Title = {Problem of the motion of two viscous incompressible fluids + separated by a closed free interface}, + Volume = {37}, + Year = {1994} +} + +@Article{ denisova2, + Author = {Denisova, I.V. and Solonnikov, V.A.}, + Journal = {St. Petersbg. Math. J.}, + Number = {5}, + Pages = {755-786}, + Title = {Classical solvability of the problem on the motion of two + viscous incompressible fluids}, + Volume = {7}, + Year = {1996} +} + +###Article{ denisova2, + Author = {Denisova, I.V. and Solonnikov, V.A.}, + Journal = {St. Petersbg. Math. J.}, + Number = {5}, + Pages = {755-786}, + Title = {Classical solvability of the problem on the motion of two + viscous incompressible fluids}, + Volume = {7}, + Year = {1996} +} + +@Article{ deparis-discacciati-fourestey-quarteroni-06, + Author = {Deparis, S. and Discacciati, M. and Fourestey, G. and + Quarteroni, A.}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Number = {41-43}, + Pages = {5797--5812}, + Title = {Fluid-structure algorithms based on {S}teklov-{P}oincar\'e + operators}, + Volume = {195}, + Year = {2006} +} + +###Article{ deparis-discacciati-fourestey-quarteroni-06, + Author = {Deparis, S. and Discacciati, M. and Fourestey, G. and + Quarteroni, A.}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Number = {41-43}, + Pages = {5797--5812}, + Title = {Fluid-structure algorithms based on {S}teklov-{P}oincar\'e + operators}, + Volume = {195}, + Year = {2006} +} + +@InProceedings{ deparis-discacciati-quarteroni-04, + Author = {Deparis, S. and Discacciati, M. and Quarteroni, A.}, + BookTitle = {Proceedings of the Third International Conference on + Computational Fluid Dynamics (ICCFD3)}, + Title = {A domain decomposition framework for fluid-structure + interaction problems}, + Year = {2004} +} + +###InProceedings{ deparis-discacciati-quarteroni-04, + Author = {Deparis, S. and Discacciati, M. and Quarteroni, A.}, + BookTitle = {Proceedings of the Third International Conference on + Computational Fluid Dynamics (ICCFD3)}, + Title = {A domain decomposition framework for fluid-structure + interaction problems}, + Year = {2004} +} + +@Article{ deparis-fernandez-formaggia-03, + Author = {Deparis, S. and Fern{\'a}ndez, M.A. and Formaggia, L.}, + fjournal = {M2AN. Mathematical Modelling and Numerical Analysis}, + ISSN = {0764-583X}, + Journal = {M2AN Math. Model. Numer. Anal.}, + mrclass = {74F10 (65M99 76D05 76M25)}, + mrnumber = {MR2018432 (2004i:74035)}, + Number = {4}, + Pages = {601--616}, + Title = {Acceleration of a fixed point algorithm for + fluid-structure interaction using transpiration + conditions}, + Volume = {37}, + Year = {2003} +} + +###Article{ deparis-fernandez-formaggia-03, + Author = {Deparis, S. and Fern{\'a}ndez, M.A. and Formaggia, L.}, + fjournal = {M2AN. Mathematical Modelling and Numerical Analysis}, + ISSN = {0764-583X}, + Journal = {M2AN Math. Model. Numer. Anal.}, + mrclass = {74F10 (65M99 76D05 76M25)}, + mrnumber = {MR2018432 (2004i:74035)}, + Number = {4}, + Pages = {601--616}, + Title = {Acceleration of a fixed point algorithm for + fluid-structure interaction using transpiration + conditions}, + Volume = {37}, + Year = {2003} +} + +@InProceedings{ deparis-fernandez-formaggia-nobile-03, + Author = {Deparis, S. and Fern{\'a}ndez, M.A. and Formaggia, L. and + Nobile, F.}, + BookTitle = {Second M.I.T. Conference on Computational Fluid and Solid + Mechanics}, + code = {fsi9}, + Editor = {K.J. Bathe}, + page = {1307-1311}, + Publisher = {Elsevier}, + Title = {Acceleration of a fixed point algorithm for + fluid-structure interaction using transpiration + conditions}, + Year = {2003} +} + +###InProceedings{ deparis-fernandez-formaggia-nobile-03, + Author = {Deparis, S. and Fern{\'a}ndez, M.A. and Formaggia, L. and + Nobile, F.}, + BookTitle = {Second M.I.T. Conference on Computational Fluid and Solid + Mechanics}, + code = {fsi9}, + Editor = {K.J. Bathe}, + page = {1307-1311}, + Publisher = {Elsevier}, + Title = {Acceleration of a fixed point algorithm for + fluid-structure interaction using transpiration + conditions}, + Year = {2003} +} + +@Unpublished{ deparis-gerbeau-vasseur, + Author = {Deparis, S. and Gerbeau, J-F. and Vasseur, X.}, + Note = {RR INRIA No 5277, 2004}, + Title = {{A Dynamic Preconditioner for Newton-Krylov Algorithms. + Application to Fluid-Structure Interaction}} +} + +###Unpublished{ deparis-gerbeau-vasseur, + Author = {Deparis, S. and Gerbeau, J-F. and Vasseur, X.}, + Note = {RR INRIA No 5277, 2004}, + Title = {{A Dynamic Preconditioner for Newton-Krylov Algorithms. + Application to Fluid-Structure Interaction}} +} + +@Article{ descloux-flueck-romerio-91, + Author = {Descloux, J. and Flueck, M. and Romerio, M.V.}, + Journal = {Magnetohydrodynamics in Process Metallurgy}, + Pages = {107-110}, + Publisher = {The Minerals, Metals & Materials Society}, + Title = {Modelling for instabilities in Hall-Heroult cells : + mathematical and numerical aspects}, + Year = {1991} +} + +###Article{ descloux-flueck-romerio-91, + Author = {Descloux, J. and Flueck, M. and Romerio, M.V.}, + Journal = {Magnetohydrodynamics in Process Metallurgy}, + Pages = {107-110}, + Publisher = {The Minerals, Metals & Materials Society}, + Title = {Modelling for instabilities in Hall-Heroult cells : + mathematical and numerical aspects}, + Year = {1991} +} + +@Article{ descloux-flueck-romerio-91b, + Author = {Descloux, J. and Flueck, M. and Romerio, M.V.}, + Journal = {Light Metal}, + Pages = {275-281}, + Title = {Stability in aluminium reduction cells : a spectral + problem solved by an iterative procedure}, + Year = {1994} +} + +###Article{ descloux-flueck-romerio-91b, + Author = {Descloux, J. and Flueck, M. and Romerio, M.V.}, + Journal = {Light Metal}, + Pages = {275-281}, + Title = {Stability in aluminium reduction cells : a spectral + problem solved by an iterative procedure}, + Year = {1994} +} + +@Article{ descloux-frosio-flueck-89, + Author = {Descloux, J. and Frosio, R. and Fl{\"u}ck, M.}, + code = {mob2}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Number = {3}, + Pages = {215--226}, + Title = {A two fluids stationary free boundary problem}, + Volume = {77}, + Year = {1989} +} + +###Article{ descloux-frosio-flueck-89, + Author = {Descloux, J. and Frosio, R. and Fl{\"u}ck, M.}, + code = {mob2}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Number = {3}, + Pages = {215--226}, + Title = {A two fluids stationary free boundary problem}, + Volume = {77}, + Year = {1989} +} + +@Article{ descloux-jaccard-romerio-91, + Annote = {mhd, aluminium, long time, stability}, + Author = {Descloux, J. and Jaccard, Y. and Romerio, M.V.}, + code = {mhd23}, + Journal = {Journal of Computational and Applied Mathematics}, + Pages = {77-85}, + Title = {A bidimensional stability result for aluminium + electrolytic cells}, + Volume = {38}, + Year = {1991} +} + +###Article{ descloux-jaccard-romerio-91, + Annote = {mhd, aluminium, long time, stability}, + Author = {Descloux, J. and Jaccard, Y. and Romerio, M.V.}, + code = {mhd23}, + Journal = {Journal of Computational and Applied Mathematics}, + Pages = {77-85}, + Title = {A bidimensional stability result for aluminium + electrolytic cells}, + Volume = {38}, + Year = {1991} +} + +@Article{ desjardins, + Author = {Desjardins, B.}, + Journal = {Arch. Rat. Mech. Anal.}, + Pages = {135-158}, + Title = {Regularity results for the two dimensional multiphase + viscous flows}, + Volume = {137}, + Year = {1997} +} + +###Article{ desjardins, + Author = {Desjardins, B.}, + Journal = {Arch. Rat. Mech. Anal.}, + Pages = {135-158}, + Title = {Regularity results for the two dimensional multiphase + viscous flows}, + Volume = {137}, + Year = {1997} +} + +@Article{ desjardins-le-bris-98, + Author = {Desjardins, B. and Le Bris, C.}, + Journal = {Differential Integral Equations}, + Number = {3}, + Pages = {377--394}, + Title = {Remarks on a nonhomogeneous model of + magnetohydrodynamics}, + Volume = {11}, + Year = {1998} +} + +###Article{ desjardins-le-bris-98, + Author = {Desjardins, B. and Le Bris, C.}, + Journal = {Differential Integral Equations}, + Number = {3}, + Pages = {377--394}, + Title = {Remarks on a nonhomogeneous model of + magnetohydrodynamics}, + Volume = {11}, + Year = {1998} +} + +@Article{ devault_blood_2008, + Title = {Blood Flow in the Circle of {{Willis}}: Modeling and + Calibration}, + Volume = {7}, + ShortTitle = {Blood Flow in the Circle of {{Willis}}}, + Number = {2}, + JournalTitle = {Multiscale Modeling \& Simulation}, + Year = {2008}, + Pages = {888--909}, + Author = {DeVault, Kristen and Gremaud, Pierre A. and Novak, Vera + and Olufsen, Mette S. and Vernieres, Guillaume and Zhao, + Peng} +} + +@PhdThesis{ dominguez-82, + Annote = {mhd, finite element}, + Author = {Dominguez de la Rasilla, J.-M.}, + code = {mhd30}, + School = {Universit{\'e} de Paris VI}, + Title = {Etude des {\'e}quations de la magn{\'e}tohydrodynamique + stationnaires et de leur approximation par {\'e}l{\'e}ments + finis}, + Type = {Th{\`e}se}, + Year = {1982} +} + +###PhdThesis{ dominguez-82, + Annote = {mhd, finite element}, + Author = {Dominguez de la Rasilla, J.-M.}, + code = {mhd30}, + School = {Universit{\'e} de Paris VI}, + Title = {Etude des {\'e}quations de la magn{\'e}tohydrodynamique + stationnaires et de leur approximation par {\'e}l{\'e}ments + finis}, + Type = {Th{\`e}se}, + Year = {1982} +} + +@Article{ donati2015non, + Title = {Non-invasive pressure difference estimation from + {PC}-{MRI} using the work-energy equation}, + Author = {Donati, Fabrizio and Figueroa, C Alberto and Smith, + Nicolas P and Lamata, Pablo and Nordsletten, David A}, + Journal = {Medical Image Analysis}, + Volume = {26}, + Number = {1}, + Pages = {159--172}, + Year = {2015}, + Publisher = {Elsevier} +} + +###Article{ donati2015non, + Title = {Non-invasive pressure difference estimation from + {PC}-{MRI} using the work-energy equation}, + Author = {Donati, Fabrizio and Figueroa, C Alberto and Smith, + Nicolas P and Lamata, Pablo and Nordsletten, David A}, + Journal = {Medical Image Analysis}, + Volume = {26}, + Number = {1}, + Pages = {159--172}, + Year = {2015}, + Publisher = {Elsevier} +} + +@Article{ donati2016circulation, + Title = {Beyond Bernoulli: improving the accuracy and precision of + non-invasive estimation of peak pressure}, + Author = {Donati, F. and Myerson, S. and Bissel, M. and Smith, N. + and Neubauer, S. and Monaghan, M. and Nordsletten, D. + Lamata, P.}, + Journal = {Circulation Cardiovascular Imaging}, + Year = {2016}, + Note = {To appear} +} + +@Article{ donati_beyond_2017, + langid = {english}, + Title = {Beyond {{Bernoulli}}: {{Improving}} the {{Accuracy}} and + {{Precision}} of {{Noninvasive Estimation}} of {{Peak + Pressure Drops}}}, + Volume = {10}, + ISSN = {1941-9651, 1942-0080}, + URL = {https://www.ahajournals.org/doi/10.1161/CIRCIMAGING.116.005207}, + DOI = {10.1161/CIRCIMAGING.116.005207}, + ShortTitle = {Beyond {{Bernoulli}}}, + Number = {1}, + JournalTitle = {Circulation: Cardiovascular Imaging}, + URLDate = {2019-02-18}, + Date = {2017-01}, + Author = {Donati, Fabrizio and Myerson, Saul and Bissell, Malenka M. + and Smith, Nicolas P. and Neubauer, Stefan and Monaghan, + Mark J. and Nordsletten, David A. and Lamata, Pablo} +} + +###Article{ donati_beyond_2017, + langid = {english}, + Title = {Beyond {{Bernoulli}}: {{Improving}} the {{Accuracy}} and + {{Precision}} of {{Noninvasive Estimation}} of {{Peak + Pressure Drops}}}, + Volume = {10}, + ISSN = {1941-9651, 1942-0080}, + URL = {https://www.ahajournals.org/doi/10.1161/CIRCIMAGING.116.005207}, + DOI = {10.1161/CIRCIMAGING.116.005207}, + ShortTitle = {Beyond {{Bernoulli}}}, + Number = {1}, + JournalTitle = {Circulation: Cardiovascular Imaging}, + URLDate = {2019-02-18}, + Year = {2017-01}, + Author = {Donati, Fabrizio and Myerson, Saul and Bissell, Malenka M. + and Smith, Nicolas P. and Neubauer, Stefan and Monaghan, + Mark J. and Nordsletten, David A. and Lamata, Pablo} +} + +@Article{ donati_non-invasive_2015, + Title = {Non-Invasive Pressure Difference Estimation from + {{PC}}-{{MRI}} Using the Work-Energy Equation}, + Volume = {26}, + URL = {http://www.sciencedirect.com/science/article/pii/S1361841515001371}, + Number = {1}, + JournalTitle = {Medical image analysis}, + URLDate = {2016-11-23}, + Year = {2015}, + Pages = {159--172}, + Author = {Donati, Fabrizio and Figueroa, C. Alberto and Smith, + Nicolas P. and Lamata, Pablo and Nordsletten, David A.} +} + +@Article{ donea-giuliani-halleux-82, + Author = {Don{\'e}a, J. and Giuliani, S. and Halleux, J. P.}, + Journal = {Comp. Meth. Appl. Mech. Engng.}, + Pages = {689--723}, + Title = {An arbitrary {Lagrangian-Eulerian} finite element method + for transient dynamic fluid-structure interactions}, + Year = {1982} +} + +###Article{ donea-giuliani-halleux-82, + Author = {Don{\'e}a, J. and Giuliani, S. and Halleux, J. P.}, + Journal = {Comp. Meth. Appl. Mech. Engng.}, + Pages = {689--723}, + Title = {An arbitrary {Lagrangian-Eulerian} finite element method + for transient dynamic fluid-structure interactions}, + Year = {1982} +} + +@Unpublished{ doorly-sherwin-franke-peiro-01, + Author = {Doorly, D.J. and Sherwin, S.J. and Franke, P.T. and + Peir\'{o}, J.}, + Note = {Special issue on CFD in Computer Methods in Biomechanics + and Biomedical Engineering}, + Title = {Vortical flow structure identification and flow transport + in arteries}, + Year = {2001} +} + +###Unpublished{ doorly-sherwin-franke-peiro-01, + Author = {Doorly, D.J. and Sherwin, S.J. and Franke, P.T. and + Peir\'{o}, J.}, + Note = {Special issue on CFD in Computer Methods in Biomechanics + and Biomedical Engineering}, + Title = {Vortical flow structure identification and flow transport + in arteries}, + Year = {2001} +} + +@Article{ dorn2009nature, + Title = {Novel pharmacotherapies to abrogate postinfarction + ventricular remodeling}, + Author = {Dorn, Gerald W}, + Journal = {Nature Reviews Cardiology}, + Year = {2009}, + Number = {4}, + Pages = {283--291}, + Volume = {6}, + File = {dorn09.pdf:dorn09.pdf:PDF}, + Publisher = {Nature Publishing Group}, + timestamp = {2015/09/20} +} + +@Article{ dou2002mrm, + Title = {Cardiac diffusion {MRI} without motion effects}, + Author = {Dou, Jiangang and Reese, Timothy G. and Tseng, Wen-Yih I. + and Wedeen, Van J.}, + Journal = {Magnetic Resonance in Medicine}, + Year = {2002}, + Month = jul, + Number = {1}, + Pages = {105--114}, + Volume = {48}, + Abstract = {We present a method for diffusion tensor MRI in the + beating heart that is insensitive to cardiac motion and + strain. Using a stimulated echo pulse sequence with two + electrocardiogram (ECG) triggers, diffusion-encoding + bipolar gradient pulses are applied at identical phases in + consecutive cardiac cycles. In this experiment, diffusion + is encoded at a single phase in the cardiac cycle of less + than 30 ms in duration. This encoding produces no phase + shifts for periodic motion and is independent of + intervening strains. Studies in a gel phantom with cyclic + deformation confirm that by using this sequence we can map + the diffusion tensor free of effects of cyclic motion. In + normal human subjects, myocardial diffusion eigenvalues + measured with the present method showed no significant + change between acquisitions encoded at maximum contractile + velocity (peak) vs. at myocardial standstill (end-systole), + demonstrating motion independence of in vivo diffusion + measurements. Diffusion tensor images acquired with the + present method agree with registered data acquired with a + previous cardiac diffusion MRI method that was shown to be + valid in the normal heart, strongly supporting the validity + of MRI diffusion measurement in the beating heart. + Myocardial sheet and fiber dynamics measured during systole + showed that normal human myocardial sheet orientations tilt + toward the radial during systole, and fiber orientations + tilt toward the longitudinal, in qualitative agreement with + previous invasive studies in canines. These results + demonstrate the technique's ability to measure myocardial + diffusion accurately at any point in the cardiac cycle free + of measurable motion effect, as if the heart were frozen at + the point of acquisition. Magn Reson Med + 48:105{\textendash}114, 2002. {\textcopyright} 2002 + Wiley-Liss, Inc.}, + copyright = {Copyright {\textcopyright} 2002 Wiley-Liss, Inc.}, + DOI = {10.1002/mrm.10188}, + ISSN = {1522-2594}, + Language = {en}, + owner = {david}, + timestamp = {2015-05-28 17:38:21}, + URL = {http://onlinelibrary.wiley.com/doi/10.1002/mrm.10188/abstract}, + URLDate = {2015-05-28} +} + +@Article{ douglas-wang-89, + Author = {Douglas, J. and Wang, J.}, + Journal = {Math. of Comp.}, + Number = {186}, + Pages = {495-508}, + Title = {An absolutely stabilized finite element method for the + {Stokes} problem}, + Volume = {52}, + Year = {1989} +} + +###Article{ douglas-wang-89, + Author = {Douglas, J. and Wang, J.}, + Journal = {Math. of Comp.}, + Number = {186}, + Pages = {495-508}, + Title = {An absolutely stabilized finite element method for the + {Stokes} problem}, + Volume = {52}, + Year = {1989} +} + +@Article{ douglas20161, + Title = {1-year outcomes of FFRCT-guided care in patients with + suspected coronary disease: the PLATFORM study}, + Author = {Douglas, Pamela S and De Bruyne, Bernard and Pontone, + Gianluca and Patel, Manesh R and Norgaard, Bjarne L and + Byrne, Robert A and Curzen, Nick and Purcell, Ian and + Gutberlet, Matthias and Rioufol, Gilles and others}, + Journal = {Journal of the American College of Cardiology}, + Volume = {68}, + Number = {5}, + Pages = {435--445}, + Year = {2016}, + Publisher = {Journal of the American College of Cardiology} +} + +@Article{ doyley-12, + Author = {Doyley, M.M. }, + Title = {Model-based elastography: a survey of approaches to the + inverse elasticity problem}, + Journal = {Physics in Medicine and Biology}, + Volume = {57}, + Number = {3}, + Pages = {R35}, + Year = {2012}, + Abstract = {Elastography is emerging as an imaging modality that can + distinguish normal versus diseased tissues via their + biomechanical properties. This paper reviews current + approaches to elastography in three areas—quasi-static, + harmonic and transient—and describes inversion schemes + for each elastographic imaging approach. Approaches include + first-order approximation methods; direct and iterative + inversion schemes for linear elastic; isotropic materials + and advanced reconstruction methods for recovering + parameters that characterize complex mechanical behavior. + The paper's objective is to document efforts to develop + elastography within the framework of solving an inverse + problem, so that elastography may provide reliable + estimates of shear modulus and other mechanical parameters. + We discuss issues that must be addressed if model-based + elastography is to become the prevailing approach to + quasi-static, harmonic and transient elastography: (1) + developing practical techniques to transform the ill-posed + problem with a well-posed one; (2) devising better forward + models to capture the complex mechanical behavior of soft + tissues and (3) developing better test procedures to + evaluate the performance of modulus elastograms.} +} + +###Article{ doyley-12, + Author = {Doyley, M.M. }, + Title = {Model-based elastography: a survey of approaches to the + inverse elasticity problem}, + Journal = {Physics in Medicine and Biology}, + Volume = {57}, + Number = {3}, + Pages = {R35}, + URL = {http://stacks.iop.org/0031-9155/57/i=3/a=R35}, + Year = {2012}, + Abstract = {Elastography is emerging as an imaging modality that can + distinguish normal versus diseased tissues via their + biomechanical properties. This paper reviews current + approaches to elastography in three areas—quasi-static, + harmonic and transient—and describes inversion schemes + for each elastographic imaging approach. Approaches include + first-order approximation methods; direct and iterative + inversion schemes for linear elastic; isotropic materials + and advanced reconstruction methods for recovering + parameters that characterize complex mechanical behavior. + The paper's objective is to document efforts to develop + elastography within the framework of solving an inverse + problem, so that elastography may provide reliable + estimates of shear modulus and other mechanical parameters. + We discuss issues that must be addressed if model-based + elastography is to become the prevailing approach to + quasi-static, harmonic and transient elastography: (1) + developing practical techniques to transform the ill-posed + problem with a well-posed one; (2) devising better forward + models to capture the complex mechanical behavior of soft + tissues and (3) developing better test procedures to + evaluate the performance of modulus elastograms.} +} + +@Article{ draney-taylor-etal-04, + Author = {Draney, M.T. and Arko, F.R. and Alley, M.T. and Markl, M. + and Herfkens, R.J. and Pelc, R.J. and Zarins, C.K. and + Taylor, C.A.}, + date-added = {2009-03-10 12:06:21 -0700}, + date-modified = {2009-03-10 12:07:39 -0700}, + Journal = {{Magnetic Resonance in Medicine}}, + Pages = {286-295}, + Title = {Quantification of Vessel Wall Motion and Cyclic Strain + Using Cine Phase Contrast MRI: In Vivo Validation in the + Porcine Aorta}, + Volume = {52}, + Year = {2004} +} + +###Article{ draney-taylor-etal-04, + Author = {Draney, M.T. and Arko, F.R. and Alley, M.T. and Markl, M. + and Herfkens, R.J. and Pelc, R.J. and Zarins, C.K. and + Taylor, C.A.}, + date-added = {2009-03-10 12:06:21 -0700}, + date-modified = {2009-03-10 12:07:39 -0700}, + Journal = {Magnetic Resonance in Medicine}, + Pages = {286-295}, + Title = {Quantification of Vessel Wall Motion and Cyclic Strain + Using Cine Phase Contrast MRI: In Vivo Validation in the + Porcine Aorta}, + Volume = {52}, + Year = {2004} +} + +@Article{ durlofsky-brady-87, + Author = {Durlofsky, L. and Brady, J-F.}, + code = {por9}, + Journal = {Phys. Fluid}, + Number = {11}, + Pages = {3329-3341}, + Title = {Analysis of the Brinkman equation as a model for flow in + porous media}, + Volume = {30}, + Year = {1987} +} + +@Book{ duvaut-lions-72, + Author = {Duvaut, G. and Lions, J.-L.}, + Publisher = {Dunod}, + Title = {Les in{\'e}quations en m{\'e}canique et en physique}, + Year = {1972} +} + +###Book{ duvaut-lions-72, + Author = {Duvaut, G. and Lions, J.-L.}, + Publisher = {Dunod}, + Title = {Les in{\'e}quations en m{\'e}canique et en physique}, + Year = {1972} +} + +@Article{ duvaut-lions-72b, + Annote = {mhd, bingham, existence}, + Author = {Duvaut, G. and Lions, J.-L.}, + code = {mhd15}, + Journal = {Arch. Rat. Mech. Anal.}, + Pages = {241-279}, + Title = {In{\'e}quations en thermo{\'e}lasticit{\'e} et + magn{\'e}tohydrodynamique}, + Volume = {46}, + Year = {1972} +} + +###Article{ duvaut-lions-72b, + Annote = {mhd, bingham, existence}, + Author = {Duvaut, G. and Lions, J.-L.}, + code = {mhd15}, + Journal = {Arch. Rat. Mech. Anal.}, + Pages = {241-279}, + Title = {In{\'e}quations en thermo{\'e}lasticit{\'e} et + magn{\'e}tohydrodynamique}, + Volume = {46}, + Year = {1972} +} + +@InProceedings{ dwight-10, + Title = {Bayesian inference for data assimilation using + Least-Squares Finite Element methods}, + Author = {Dwight, R.P.}, + BookTitle = {IOP Conference Series: Materials Science and Engineering}, + Volume = {10}, + Number = {1}, + Pages = {012224}, + Year = {2010}, + Organization = {IOP Publishing} +} + +###InProceedings{ dwight-10, + Title = {Bayesian inference for data assimilation using + Least-Squares Finite Element methods}, + Author = {Dwight, R.P.}, + BookTitle = {IOP Conference Series: Materials Science and Engineering}, + Volume = {10}, + Number = {1}, + Pages = {012224}, + Year = {2010}, + Organization = {IOP Publishing} +} + +@Article{ dyverfeldt20154d, + Title = {4{D} flow cardiovascular magnetic resonance consensus + statement}, + Author = {Dyverfeldt, Petter and Bissell, Malenka and Barker, Alex J + and Bolger, Ann F and Carlh{\"a}ll, Carl-Johan and Ebbers, + Tino and Francios, Christopher J and Frydrychowicz, Alex + and Geiger, Julia and Giese, Daniel and others}, + Journal = {Journal of Cardiovascular Magnetic Resonance}, + Volume = {17}, + Number = {1}, + Pages = {1--19}, + Year = {2015}, + Publisher = {Springer} +} + +@Article{ dyverfeldt2015consensus4dflow, + Title = {4{D} flow cardiovascular magnetic resonance consensus + statement}, + Author = {Dyverfeldt, Petter and Bissell, Malenka and Barker, Alex J + and Bolger, Ann F and Carlh{\"a}ll, Carl-Johan and Ebbers, + Tino and Francios, Christopher J and Frydrychowicz, Alex + and Geiger, Julia and Giese, Daniel and others}, + Journal = {Journal of Cardiovascular Magnetic Resonance}, + Volume = {17}, + Number = {1}, + Pages = {1--19}, + Year = {2015}, + Publisher = {Springer} +} + +@Article{ dyverfeldt_4d_2015, + Title = {{{4D}} Flow Cardiovascular Magnetic Resonance Consensus + Statement}, + Author = {Dyverfeldt, Petter and Bissell, Malenka and Barker, Alex + J. and Bolger, Ann F. and Carlh{\"a}ll, Carl-Johan and + Ebbers, Tino and Francios, Christopher J. and + Frydrychowicz, Alex and Geiger, Julia and Giese, Daniel and + Hope, Michael D. and Kilner, Philip J. and Kozerke, + Sebastian and Myerson, Saul and Neubauer, Stefan and + Wieben, Oliver and Markl, Michael}, + Year = {2015}, + Month = dec, + Volume = {17}, + ISSN = {1532-429X}, + DOI = {10.1186/s12968-015-0174-5}, + Journal = {J Cardiovasc Magn Reson}, + Language = {en}, + Number = {1} +} + +###Article{ dyverfeldt_4d_2015, + Title = {4D flow cardiovascular magnetic resonance consensus + statement}, + Author = {Dyverfeldt, Petter and Bissell, Malenka and Barker, Alex J + and Bolger, Ann F and Carlh{\"a}ll, Carl-Johan and Ebbers, + Tino and Francios, Christopher J and Frydrychowicz, Alex + and Geiger, Julia and Giese, Daniel and others}, + Journal = {Journal of Cardiovascular Magnetic Resonance}, + Volume = {17}, + Number = {1}, + Pages = {72}, + Year = {2015}, + Publisher = {Springer} +} + +@Article{ dyverfeldt_magnetic_2013, + Title = {Magnetic Resonance Measurement of Turbulent Kinetic Energy + for the Estimation of Irreversible Pressure Loss in Aortic + Stenosis}, + Volume = {6}, + Number = {1}, + JournalTitle = {JACC: Cardiovascular Imaging}, + Year = {2013}, + Pages = {64--71}, + Author = {Dyverfeldt, Petter and Hope, Michael D. and Tseng, Elaine + E. and Saloner, David} +} + +@Article{ dyverfeldt_quantification_2006, + langid = {english}, + Title = {Quantification of Intravoxel Velocity Standard Deviation + and Turbulence Intensity by Generalizing Phase-Contrast + {{MRI}}}, + Volume = {56}, + ISSN = {1522-2594}, + URL = {http://onlinelibrary.wiley.com/doi/10.1002/mrm.21022/abstract}, + DOI = {10.1002/mrm.21022}, + Abstract = {Turbulent flow, characterized by velocity fluctuations, is + a contributing factor to the pathogenesis of several + cardiovascular diseases. A clinical noninvasive tool for + assessing turbulence is lacking, however. It is well known + that the occurrence of multiple spin velocities within a + voxel during the influence of a magnetic gradient moment + causes signal loss in phase-contrast magnetic resonance + imaging (PC-MRI). In this paper a mathematical derivation + of an expression for computing the standard deviation (SD) + of the blood flow velocity distribution within a voxel is + presented. The SD is obtained from the magnitude of PC-MRI + signals acquired with different first gradient moments. By + exploiting the relation between the SD and turbulence + intensity (TI), this method allows for quantitative studies + of turbulence. For validation, the TI in an in vitro flow + phantom was quantified, and the results compared favorably + with previously published laser Doppler anemometry (LDA) + results. This method has the potential to become an + important tool for the noninvasive assessment of turbulence + in the arterial tree. Magn Reson Med, 2006. © 2006 + Wiley-Liss, Inc.}, + Number = {4}, + JournalTitle = {Magnetic Resonance in Medicine}, + ShortJournal = {Magn. Reson. Med.}, + URLDate = {2017-10-12}, + Year = {2006-10-01}, + Pages = {850-858}, + Author = {Dyverfeldt, Petter and Sigfridsson, Andreas and Kvitting, + John-Peder Escobar and Ebbers, Tino} +} + +@Article{ ebbers2001mrm, + Title = {Estimation of relative cardiovascular pressures using + time-resolved three-dimensional phase contrast {MRI}}, + Author = {Ebbers, Tino and Wigstr{\"o}m, Lars and Bolger, Ann F and + Engvall, Jan and Karlsson, Matts}, + Journal = {Magnetic resonance in medicine}, + Volume = {45}, + Number = {5}, + Pages = {872--879}, + Year = {2001}, + Publisher = {Wiley Online Library} +} + +###Article{ ebbers2001mrm, + Title = {Estimation of relative cardiovascular pressures using + time-resolved three-dimensional phase contrast {MRI}}, + Author = {Ebbers, Tino and Wigstr{\"o}m, Lars and Bolger, Ann F and + Engvall, Jan and Karlsson, Matts}, + Journal = {Magnetic resonance in medicine}, + Volume = {45}, + Number = {5}, + Pages = {872--879}, + Year = {2001}, + Publisher = {Wiley Online Library} +} + +@Article{ ebbers2009jmri, + Title = {Improving computation of cardiovascular relative pressure + fields from velocity {MRI}}, + Author = {Ebbers, Tino and Farneb{\"a}ck, Gunnar}, + Journal = {Journal of Magnetic Resonance Imaging}, + Volume = {30}, + Number = {1}, + Pages = {54--61}, + Year = {2009}, + Publisher = {Wiley Online Library} +} + +###Article{ ebbers2009jmri, + Title = {Improving computation of cardiovascular relative pressure + fields from velocity {MRI}}, + Author = {Ebbers, Tino and Farneb{\"a}ck, Gunnar}, + Journal = {Journal of Magnetic Resonance Imaging}, + Volume = {30}, + Number = {1}, + Pages = {54--61}, + Year = {2009}, + Publisher = {Wiley Online Library} +} + +@Article{ ebbers_estimation_2001, + Title = {Estimation of Relative Cardiovascular Pressures Using + Time-Resolved Three-Dimensional Phase Contrast {{MRI}}}, + Author = {Ebbers, Tino and Wigstr{\"o}m, Lars and Bolger, Ann F. and + Engvall, Jan and Karlsson, Matts}, + Year = {2001}, + Volume = {45}, + Pages = {872--879}, + Journal = {Magnetic Resonance in Medicine: An Official Journal of the + International Society for Magnetic Resonance in Medicine}, + Number = {5} +} + +###Article{ ebbers_estimation_2001, + Title = {Estimation of Relative Cardiovascular Pressures Using + Time-Resolved Three-Dimensional Phase Contrast {{MRI}}}, + Volume = {45}, + Number = {5}, + JournalTitle = {Magnetic Resonance in Medicine: An Official Journal of the + International Society for Magnetic Resonance in Medicine}, + Year = {2001}, + Pages = {872--879}, + Author = {Ebbers, Tino and Wigström, Lars and Bolger, Ann F. and + Engvall, Jan and Karlsson, Matts} +} + +@Article{ ebbers_improving_2009, + Title = {Improving Computation of Cardiovascular Relative Pressure + Fields from Velocity {{MRI}}}, + Author = {Ebbers, Tino and Farneb{\"a}ck, Gunnar}, + Year = {2009}, + Volume = {30}, + Pages = {54--61}, + Journal = {Journal of Magnetic Resonance Imaging}, + Number = {1} +} + +@Article{ ebbers_noninvasive_2002, + Title = {Noninvasive Measurement of Time-Varying Three-Dimensional + Relative Pressure Fields within the Human Heart}, + Volume = {124}, + URL = {http://biomechanical.asmedigitalcollection.asme.org/data/Journals/JBENDY/26248/288_1.pdf}, + Number = {3}, + JournalTitle = {Journal of biomechanical engineering}, + URLDate = {2015-07-24}, + Date = {2002}, + Pages = {288--293}, + Author = {Ebbers, Tino and Wigstrom, L. and Bolger, A. F. and + Wranne, Bengt and Karlsson, Matts} +} + +###Article{ ebbers_noninvasive_2002, + Title = {Noninvasive Measurement of Time-Varying Three-Dimensional + Relative Pressure Fields within the Human Heart}, + Volume = {124}, + URL = {http://biomechanical.asmedigitalcollection.asme.org/data/Journals/JBENDY/26248/288_1.pdf}, + Number = {3}, + JournalTitle = {Journal of biomechanical engineering}, + URLDate = {2015-07-24}, + Year = {2002}, + Pages = {288--293}, + Author = {Ebbers, Tino and Wigstrom, L. and Bolger, A. F. and + Wranne, Bengt and Karlsson, Matts} +} + +@InBook{ engeldinger-62, + Annote = {mhd, duct flow}, + Author = {Engeldinger, P.}, + code = {mhd18}, + Pages = {85-120}, + Publisher = {Eyrolles}, + Series = {Collection du Laboratoire National d'Hydraulique}, + Title = {Turbulence et perte de charge dans les {\'e}coulements + conducteurs en conduites avec champ magn{\'e}tique + transversal}, + Year = {1962} +} + +###InBook{ engeldinger-62, + Annote = {mhd, duct flow}, + Author = {Engeldinger, P.}, + code = {mhd18}, + Pages = {85-120}, + Publisher = {Eyrolles}, + Series = {Collection du Laboratoire National d'Hydraulique}, + Title = {Turbulence et perte de charge dans les {\'e}coulements + conducteurs en conduites avec champ magn{\'e}tique + transversal}, + Year = {1962} +} + +@Article{ engelman-sani-gresho-82, + Author = {Engelman, M.S. and Sani, R.L. and Gresho, P.M.}, + Journal = {Int. J. Num. Meth. Fluids}, + Number = {3}, + Pages = {225--238}, + Title = {The implementation of normal and/or tangential velocity + boundary conditions in finite element codes for + incompressible fluid flow}, + Volume = {2}, + Year = {1982} +} + +###Article{ engelman-sani-gresho-82, + Author = {Engelman, M.S. and Sani, R.L. and Gresho, P.M.}, + Journal = {Int. J. Num. Meth. Fluids}, + Number = {3}, + Pages = {225--238}, + Title = {The implementation of normal and/or tangential velocity + boundary conditions in finite element codes for + incompressible fluid flow}, + Volume = {2}, + Year = {1982} +} + +@Article{ ennis2008myofiber, + Author = {Ennis, Daniel B and Nguyen, Tom C and Riboh, Jonathan C + and Wigstr{\"o}m, Lars and Harrington, Katherine B and + Daughters, George T and Ingels, Neil B and Miller, D Craig}, + Title = {Myofiber angle distributions in the ovine left ventricle + do not conform to computationally optimized predictions}, + Journal = {Journal of Biomechanics}, + Year = {2008}, + Volume = {41}, + Pages = {3219--3224}, + Number = {15}, + Publisher = {Elsevier} +} + +@Article{ erbel_2014_2014, + Title = {2014 {{ESC Guidelines}} on the Diagnosis and Treatment of + Aortic Diseases: {{Document}} Covering Acute and Chronic + Aortic Diseases of the Thoracic and Abdominal Aorta of the + Adult. {{The Task Force}} for the {{Diagnosis}} and + {{Treatment}} of {{Aortic Diseases}} of the {{European + Society}} of {{Cardiology}} ({{ESC}})}, + Volume = {35}, + ShortTitle = {2014 {{ESC Guidelines}} on the Diagnosis and Treatment of + Aortic Diseases}, + Number = {41}, + JournalTitle = {European heart journal}, + Year = {2014}, + Pages = {2873--2926}, + Author = {Erbel, Raimund and Aboyans, Victor and Boileau, Catherine + and Bossone, Eduardo and Bartolomeo, Roberto Di and + Eggebrecht, Holger and Evangelista, Arturo and Falk, + Volkmar and Frank, Herbert} +} + +@Article{ eriksson2013mms, + Title = {Influence of myocardial fiber/sheet orientations on left + ventricular mechanical contraction}, + Author = {Eriksson, TSE and Prassl, AJ and Plank, G and Holzapfel, + GA}, + Journal = {Mathematics and Mechanics of Solids}, + Year = {2013}, + Abstract = {At any point in space the material properties of the + myocardium are characterized as orthotropic, that is, there + are three mutually orthogonal axes along which both + electrical and mechanical parameters differ. To investigate + the role of spatial structural heterogeneity in an + orthotropic material, electro-mechanically coupled models + of the left ventricle (LV) were used. The implemented + models differed in their arrangement of fibers and sheets + in the myocardium, but were identical otherwise: (i) a + generic homogeneous model, where a rule-based method was + applied to assign fiber and sheet orientations, and (ii) a + heterogeneous model, where the assignment of the + orthotropic tissue structure was based on experimentally + obtained fiber/sheet orientations. While both models + resulted in pressure?volume loops and metrics of global + mechanical function that were qualitatively and + quantitatively similar and matched well with experimental + data, the predicted deformations were strikingly different + between these models, particularly with regard to torsion. + Thus, the simulation results strongly suggest that + heterogeneous structure properties play an important + nonnegligible role in LV mechanics and, consequently, + should be accounted for in computational models.}, + DOI = {10.1177/1081286513485779}, + EPrint = {http://mms.sagepub.com/content/early/2013/05/29/1081286513485779.full.pdf+html}, + File = {eriksson13a.pdf:eriksson13a.pdf:PDF}, + timestamp = {2015/09/22}, + URL = {http://mms.sagepub.com/content/early/2013/05/29/1081286513485779.abstract} +} + +@Book{ ern:guermond:04, + Author = {Ern, A. and Guermond, J.~L.}, + Title = {Theory and practice of finite elements}, + Series = {Applied Mathematical Sciences}, + Volume = {159}, + Publisher = {Springer-Verlag}, + Address = {New York}, + Year = {2004}, + Pages = {xiv+524}, + ISBN = {0-387-20574-8}, + mrclass = {65-02 (65M60 65N30 74S05 76M10 78M10)}, + mrnumber = {MR2050138 (2005d:65002)}, + mrreviewer = {R. S. Anderssen} +} + +###Book{ ern:guermond:04, + Author = {Ern, A. and Guermond, J.~L.}, + Title = {Theory and practice of finite elements}, + Series = {Applied Mathematical Sciences}, + Volume = {159}, + Publisher = {Springer-Verlag}, + Address = {New York}, + Year = {2004}, + Pages = {xiv+524}, + ISBN = {0-387-20574-8}, + mrclass = {65-02 (65M60 65N30 74S05 76M10 78M10)}, + mrnumber = {MR2050138 (2005d:65002)}, + mrreviewer = {R. S. Anderssen} +} + +@Book{ ernguermond04, + Address = {New York}, + Author = {Ern, A. and Guermond, J.-L.}, + Publisher = {Springer-Verlag}, + Series = {Applied Mathematical Sciences}, + Title = {Theory and practice of finite elements}, + Volume = {159}, + Year = {2004} +} + +###Book{ ernguermond04, + Address = {New York}, + Author = {Ern, A. and Guermond, J.-L.}, + Publisher = {Springer-Verlag}, + Series = {Applied Mathematical Sciences}, + Title = {Theory and practice of finite elements}, + Volume = {159}, + Year = {2004} +} + +@Article{ ervedozaz-zuazua-08, + Author = {Ervedoza, S. and Zuazua, E.}, + date-added = {2009-03-10 11:44:05 -0700}, + date-modified = {2009-03-10 11:59:10 -0700}, + Journal = {J. Math. Pure Appl.}, + Note = {}, + Pages = {20--48}, + Title = {Uniformly exponentially stable approximations for a class + of damped systems}, + Volume = {91}, + Year = {2009} +} + +###Article{ ervedozaz-zuazua-08, + Author = {Ervedoza, S. and Zuazua, E.}, + date-added = {2009-03-10 11:44:05 -0700}, + date-modified = {2009-03-10 11:59:10 -0700}, + Journal = {J. Math. Pure Appl.}, + Note = {}, + Pages = {20--48}, + Title = {Uniformly exponentially stable approximations for a class + of damped systems}, + Volume = {91}, + Year = {2009} +} + +@Article{ essig2013perfusion, + Title = {Perfusion MRI: the five most frequently asked technical + questions}, + Author = {Essig, Marco and Shiroishi, Mark S and Nguyen, Thanh Binh + and Saake, Marc and Provenzale, James M and Enterline, + David and Anzalone, Nicoletta and D{\"o}rfler, Arnd and + Rovira, {\`A}lex and Wintermark, Max and others}, + Journal = {AJR. American journal of roentgenology}, + Volume = {200}, + Number = {1}, + Pages = {24}, + Year = {2013}, + Publisher = {NIH Public Access} +} + +@Article{ eu-pwv-10, + Title = {Determinants of pulse wave velocity in healthy people and + in the presence of cardiovascular risk factors: + establishing normal and reference values}, + Author = {{The Reference Values for Arterial Stiffness' + Collaboration}}, + Volume = {31}, + Number = {}, + Journal = {European Heart Journal}, + Publisher = {The European Society of Cardiology}, + Year = {2010}, + Pages = {2338--2350} +} + +###Article{ eu-pwv-10, + Title = {Determinants of pulse wave velocity in healthy people and + in the presence of cardiovascular risk factors: + establishing normal and reference values}, + Author = {{The Reference Values for Arterial Stiffness' + Collaboration}}, + Volume = {31}, + Number = {}, + Journal = {European Heart Journal}, + Publisher = {The European Society of Cardiology}, + Year = {2010}, + Pages = {2338--2350} +} + +@InBook{ evans2010pde, + Author = {Evans, L.C.}, + Title = {Partial Differential Equations: Second Edition}, + Year = {2010}, + Publisher = {AMS. Graduate Series in Mathematics}, + Volume = {19.R} +} + +@Book{ evensen-09, + Title = {Data assimilation: the ensemble Kalman filter}, + Author = {Evensen, G.}, + Year = {2009}, + Publisher = {Springer Verlag} +} + +###Book{ evensen-09, + Title = {Data assimilation: the ensemble Kalman filter}, + Author = {Evensen, G.}, + Year = {2009}, + Publisher = {Springer Verlag} +} + +@Book{ evensen_data_2009, + langid = {english}, + Title = {Data {{Assimilation}}: {{The Ensemble Kalman Filter}}}, + ISBN = {978-3-642-03711-5}, + ShortTitle = {Data {{Assimilation}}}, + Abstract = {Data Assimilation comprehensively covers data assimilation + and inverse methods, including both traditional state + estimation and parameter estimation. This text and + reference focuses on various popular data assimilation + methods, such as weak and strong constraint variational + methods and ensemble filters and smoothers. It is + demonstrated how the different methods can be derived from + a common theoretical basis, as well as how they differ + and/or are related to each other, and which properties + characterize them, using several examples. Rather than + emphasize a particular discipline such as oceanography or + meteorology, it presents the mathematical framework and + derivations in a way which is common for any discipline + where dynamics is merged with measurements. The mathematics + level is modest, although it requires knowledge of basic + spatial statistics, Bayesian statistics, and calculus of + variations. Readers will also appreciate the introduction + to the mathematical methods used and detailed derivations, + which should be easy to follow, are given throughout the + book. The codes used in several of the data assimilation + experiments are available on a web page. In particular, + this webpage contains a complete ensemble Kalman filter + assimilation system, which forms an ideal starting point + for a user who wants to implement the ensemble Kalman + filter with his/her own dynamical model. The focus on + ensemble methods, such as the ensemble Kalman filter and + smoother, also makes it a solid reference to the + derivation, implementation and application of such + techniques. Much new material, in particular related to the + formulation and solution of combined parameter and state + estimation problems and the general properties of the + ensemble algorithms, is available here for the first time. + The 2nd edition includes a partial rewrite of Chapters 13 + an 14, and the Appendix. In addition, there is a completely + new Chapter on "Spurious correlations, localization and + inflation", and an updated and improved sampling discussion + in Chap 11.}, + PageTotal = {314}, + Publisher = {{Springer Science \& Business Media}}, + Year = {2009-08-17}, + Author = {Evensen, Geir}, + EPrintType = {googlebooks} +} + +@Article{ evensen_ensemble_2009, + Title = {The Ensemble {{Kalman}} Filter for Combined State and + Parameter Estimation}, + Volume = {29}, + ISSN = {1066-033X}, + DOI = {10.1109/MCS.2009.932223}, + Abstract = {This article provides a fundamental theoretical basis for + understanding EnKF and serves as a useful text for future + users. Data assimilation and parameter-estimation problems + are explained, and the concept of joint parameter and state + estimation, which can be solved using ensemble methods, is + presented. KF and EKF are briefly discussed before + introducing and deriving EnKF. Similarities and differences + between KF and EnKF are pointed out. The benefits of using + EnKF with high-dimensional and highly nonlinear dynamical + models are illustrated by examples. EnKF and EnKS are also + derived from Bayes theorem, using a probabilistic approach. + The derivation is based on the assumption that measurement + errors are independent in time and the model represents a + Markov process, which allows for Bayes theorem to be + written in a recursive form, where measurements are + processed sequentially in time. The practical + implementation of the analysis scheme isdiscussed, and it + is shown that it can be computed efficiently in the space + spanned by the ensemble realizations. The square root + scheme is discussed as an alternative method that avoids + the perturbation of measurements. However, the square root + scheme has other pitfalls, and it is recommended to use the + symmetric square root with or without a random rotation. + The random rotation introduces a stochastic component to + the update, and the quality of the scheme may then not + improve compared to the original stochastic EnKF scheme + with perturbed measurements.}, + Number = {3}, + JournalTitle = {IEEE Control Systems Magazine}, + Year = {2009-06}, + Pages = {83-104}, + Author = {Evensen, G.} +} + +@Article{ ewert01072005, + Author = {Ewert, P. and Schubert, S. and Peters, B. and + Abdul-Khaliq, H. and Nagdyman, N. and Lange, P.E.}, + Title = {{The CP stent short, long, covered for the treatment of + aortic coarctation, stenosis of pulmonary arteries and + caval veins, and Fontan anastomosis in children and adults: + an evaluation of 60 stents in 53 patients}}, + Volume = {91}, + Number = {7}, + Pages = {948-953}, + Year = {2005}, + DOI = {10.1136/hrt.2004.040071}, + Abstract = {}, + Journal = {Heart} +} + +###Article{ ewert01072005, + Author = {Ewert, P. and Schubert, S. and Peters, B. and + Abdul-Khaliq, H. and Nagdyman, N. and Lange, P.E.}, + Title = {{The CP stent short, long, covered for the treatment of + aortic coarctation, stenosis of pulmonary arteries and + caval veins, and Fontan anastomosis in children and adults: + an evaluation of 60 stents in 53 patients}}, + Volume = {91}, + Number = {7}, + Pages = {948-953}, + Year = {2005}, + DOI = {10.1136/hrt.2004.040071}, + Abstract = {}, + URL = {http://heart.bmj.com/content/91/7/948.abstract}, + EPrint = {http://heart.bmj.com/content/91/7/948.full.pdf}, + Journal = {Heart} +} + +@Unpublished{ eymard-gallouet-herbin-michel, + Author = {Eymard, R. and Gallou{\"e}t, T. and Herbin, R. and Michel, + A.}, + Title = {Convergence of a finite volume scheme for nonlinear + degenerate parabolic equations} +} + +###Unpublished{ eymard-gallouet-herbin-michel, + Author = {Eymard, R. and Gallou{\"e}t, T. and Herbin, R. and Michel, + A.}, + Note = {Preprint 2001}, + Title = {Convergence of a finite volume scheme for nonlinear + degenerate parabolic equations} +} + +@Article{ falk_2017_2017, + langid = {english}, + Title = {2017 {{ESC}}/{{EACTS Guidelines}} for the Management of + Valvular Heart Disease}, + Volume = {52}, + ISSN = {1010-7940}, + URL = {https://academic.oup.com/ejcts/article/52/4/616/4095090}, + DOI = {10.1093/ejcts/ezx324}, + Abstract = {The Task Force for the Management of Valvular Heart + Disease of the European Society of Cardiology (ESC) and the + European Association for Cardio-Thoracic Surgery}, + Number = {4}, + JournalTitle = {European Journal of Cardio-Thoracic Surgery}, + ShortJournal = {Eur J Cardiothorac Surg}, + URLDate = {2019-01-30}, + Year = {2017-10-01}, + Pages = {616-664}, + Author = {Falk, Volkmar and Baumgartner, Helmut and Bax, Jeroen J. + and De Bonis, Michele and Hamm, Christian and Holm, Per + Johan and Iung, Bernard and Lancellotti, Patrizio and + Lansac, Emmanuel and Muñoz, Daniel Rodriguez and Rosenhek, + Raphael and Sjögren, Johan and Tornos Mas, Pilar and + Vahanian, Alec and Walther, Thomas and Wendler, Olaf and + Windecker, Stephan and Zamorano, Jose Luis and Roffi, Marco + and Alfieri, Ottavio and Agewall, Stefan and Ahlsson, + Anders and Barbato, Emanuele and Bueno, Héctor and Collet, + Jean-Philippe and Coman, Ioan Mircea and Czerny, Martin and + Delgado, Victoria and Fitzsimons, Donna and Folliguet, + Thierry and Gaemperli, Oliver and Habib, Gilbert and + Harringer, Wolfgang and Haude, Michael and Hindricks, + Gerhard and Katus, Hugo A. and Knuuti, Juhani and Kolh, + Philippe and Leclercq, Christophe and McDonagh, Theresa A. + and Piepoli, Massimo Francesco and Pierard, Luc A. and + Ponikowski, Piotr and Rosano, Giuseppe M. C. and + Ruschitzka, Frank and Shlyakhto, Evgeny and Simpson, Iain + A. and Sousa-Uva, Miguel and Stepinska, Janina and + Tarantini, Giuseppe and Tchétché, Didier and Aboyans, + Victor} +} + +@Article{ farag2018aorticflow, + Title = {Aortic valve stenosis and aortic diameters determine the + extent of increased wall shear stress in bicuspid aortic + valve disease}, + Author = {Farag, E. and Ooij, P. and Planken, N. and Dukker, K. and + Heer, F. and Bouma, B. and Robbers-Visser, D. and Groenink, + M. and Nederveen, A. and Mol, B. and Kluin, J. and + Boekholdt, S.}, + Journal = {Journal of Magnetic Resonance Imaging}, + Year = {2018}, + Publisher = {Wiley Online Library}, + Note = {ahead of print} +} + +@Article{ farhat-lesoinne-le-tallec-98, + Author = {Farhat, C. and Lesoinne, M. and Le Tallec, P.}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Pages = {95-114}, + Title = {Load and motion transfer algorithms for fluid/structure + interaction problems with non-matching discrete interfaces: + Momentum and energy conservation, optimal discretization + and application to aeroelasticity}, + Volume = {157}, + Year = {1998} +} + +###Article{ farhat-lesoinne-le-tallec-98, + Author = {Farhat, C. and Lesoinne, M. and Le Tallec, P.}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Pages = {95-114}, + Title = {Load and motion transfer algorithms for fluid/structure + interaction problems with non-matching discrete interfaces: + Momentum and energy conservation, optimal discretization + and application to aeroelasticity}, + Volume = {157}, + Year = {1998} +} + +@InProceedings{ farhat-lieu-07, + Address = {San Francisco}, + Author = {Farhat, C. and Lieu, T.}, + BookTitle = {Ninth U.S. National Congress on Computational Mechanics: + USNCCM9}, + Month = {July 23--26}, + Title = {A discussion of recent trends and claims pertaining to the + staggered solution of {F}{S}{I} problems}, + Year = 2007 +} + +###InProceedings{ farhat-lieu-07, + Address = {San Francisco}, + Author = {Farhat, C. and Lieu, T.}, + BookTitle = {Ninth U.S. National Congress on Computational Mechanics: + USNCCM9}, + Month = {July 23--26}, + Title = {A discussion of recent trends and claims pertaining to the + staggered solution of {F}{S}{I} problems}, + Year = 2007 +} + +@Article{ farhat-van-der-zee-geuzaine, + Author = {Farhat, C. and van der Zee, K. and Geuzaine, Ph.}, + Journal = {Comput. Methods Appl. Mech. Engrg. }, + Number = {17--18}, + Pages = {1973--2001}, + Title = {Provably second-order time-accurate loosely-coupled + solution algorithms for transient nonlinear + aeroelasticity}, + Volume = {195}, + Year = {2006} +} + +###Article{ farhat-van-der-zee-geuzaine, + Author = {Farhat, C. and van der Zee, K. and Geuzaine, Ph.}, + Journal = {Comput. Methods Appl. Mech. Engrg. }, + Number = {17--18}, + Pages = {1973--2001}, + Title = {Provably second-order time-accurate loosely-coupled + solution algorithms for transient nonlinear + aeroelasticity}, + Volume = {195}, + Year = {2006} +} + +@InProceedings{ farhat-xx, + Address = {Salzburg, Austria}, + Author = {Farhat, C.}, + BookTitle = {Proceedings of the 5th International Conference on + Computation of Shell and Spatial Structures}, + Editor = {Ramm, E. and Wall, W.A. and Bletzinger, K.U. and Bischoff, + M.}, + Month = {June 1-4}, + Title = {On the numerical stability of a class of loosely-coupled, + higher-order, fluid/structure solution algorithms}, + Year = {2005} +} + +###InProceedings{ farhat-xx, + Address = {Salzburg, Austria}, + Author = {Farhat, C.}, + BookTitle = {Proceedings of the 5th International Conference on + Computation of Shell and Spatial Structures}, + Editor = {Ramm, E. and Wall, W.A. and Bletzinger, K.U. and Bischoff, + M.}, + Month = {June 1-4}, + Title = {On the numerical stability of a class of loosely-coupled, + higher-order, fluid/structure solution algorithms}, + Year = {2005} +} + +@Article{ farzaneh2018inverse, + Title = {Inverse identification of local stiffness across ascending + thoracic aortic aneurysms}, + Author = {Farzaneh, Solmaz and Trabelsi, Olfa and Avril, + St{\'e}phane}, + Journal = {Biomechanics and modeling in mechanobiology}, + Pages = {1--17}, + Year = {2018}, + Publisher = {Springer} +} + +@Book{ fattouch2018advances, + Title = {Advances in Treatments for Aortic Valve and Root + Diseases}, + Author = {Fattouch, K. and Lancellotti, P. and Vannan, M. and + Speziale, G.}, + Year = {2018}, + Publisher = {Springer}, + Note = {doi.org/10.1007/978-3-319-66483-5} +} + +@Article{ fedele2017patient, + Title = {A patient-specific aortic valve model based on moving + resistive immersed implicit surfaces}, + Author = {Fedele, M. and Faggiano, E. and Ded{\`e}, L. and + Quarteroni, A.}, + Journal = {Biomechanics and modeling in mechanobiology}, + Volume = {16}, + Number = {5}, + Pages = {1779--1803}, + Year = {2017}, + Publisher = {Springer} +} + +@Article{ federau2014nmrbiomed, + Title = {Increased brain perfusion contrast with T 2 -prepared + intravoxel incoherent motion (T2prep IVIM) {MRI}}, + Author = {Federau, Christian and O'Brien, Kieran}, + Journal = {NMR in Biomedicine}, + Year = {2015}, + Pages = {9-16}, + Volume = {28}, + DOI = {10.1002/nbm.3223}, + File = {:Federau2014NMRBIOMED.pdf:PDF}, + ISSN = {0952-3480}, + Publisher = {Wiley-Blackwell}, + URL = {http://dx.doi.org/10.1002/nbm.3223} +} + +@Article{ felipe2016recovering, + Title = {Recovering Latent Signals from a Mixture of Measurements + using a Gaussian Process Prior}, + Author = {Felipe Tobar and Gonzalo Rios and Tom{\'a}s Valdivia and + Pablo Guerrero}, + Journal = {IEEE Signal Processing Letters}, + Year = {2016} +} + +@InProceedings{ felippa-05, + Author = {Felippa, C.A.}, + BookTitle = {5th international Conference on Computational of Shell \& + Spatial Structures}, + Organization = {IASS-IACM}, + Title = {Underwater shock on stiffened shells: the source of + {Staggered Solution Procedure}}, + Year = {2005} +} + +###InProceedings{ felippa-05, + Author = {Felippa, C.A.}, + BookTitle = {5th international Conference on Computational of Shell \& + Spatial Structures}, + Organization = {IASS-IACM}, + Title = {Underwater shock on stiffened shells: the source of + {Staggered Solution Procedure}}, + Year = {2005} +} + +@Article{ felippa-deruntz-84, + Author = {Felippa, C.A. and Deruntz, J.A.}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Number = {3}, + Pages = {297--337}, + Title = {Finite element analysis of shock-induced hull cavitation}, + Volume = {44}, + Year = {1984} +} + +###Article{ felippa-deruntz-84, + Author = {Felippa, C.A. and Deruntz, J.A.}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Number = {3}, + Pages = {297--337}, + Title = {Finite element analysis of shock-induced hull cavitation}, + Volume = {44}, + Year = {1984} +} + +@Article{ feltes_indications_2011, + Title = {Indications for Cardiac Catheterization and Intervention + in Pediatric Cardiac Disease: A Scientific Statement from + the {{American Heart Association}}}, + ShortTitle = {Indications for Cardiac Catheterization and Intervention + in Pediatric Cardiac Disease}, + Author = {Feltes, Timothy F. and Bacha, Emile and Beekman III, + Robert H. and Cheatham, John P. and Feinstein, Jeffrey A. + and Gomes, Antoinette S. and Hijazi, Ziyad M. and Ing, + Frank F. and De Moor, Michael and Morrow, W. Robert}, + Year = {2011}, + Volume = {123}, + Pages = {2607--2652}, + Journal = {Circulation}, + Number = {22} +} + +@Article{ feng-ganatos-weinbaum-98, + Author = {Feng, J. and Ganatos, P. and Weinbaum, S.}, + code = {por6}, + Journal = {Physics of fluids}, + Number = {9}, + Pages = {2137-2146}, + Title = {The general motion of a circular disk in a Brinkman + medium}, + Volume = {10}, + Year = {1998} +} + +###Article{ feng-ganatos-weinbaum-98, + Author = {Feng, J. and Ganatos, P. and Weinbaum, S.}, + code = {por6}, + Journal = {Physics of fluids}, + Number = {9}, + Pages = {2137-2146}, + Title = {The general motion of a circular disk in a Brinkman + medium}, + Volume = {10}, + Year = {1998} +} + +@Article{ feng-ganatos-weinbaum-98b, + Annote = {brinkman}, + Author = {Feng, J. and Ganatos, P. and Weinbaum, S.}, + code = {por7}, + Journal = {J. Fluid Mech.}, + Pages = {265-296}, + Title = {Motion of a sphere near planar confining boundaries in a + Brinkman medium}, + Volume = {375}, + Year = {1998} +} + +###Article{ feng-ganatos-weinbaum-98b, + Annote = {brinkman}, + Author = {Feng, J. and Ganatos, P. and Weinbaum, S.}, + code = {por7}, + Journal = {J. Fluid Mech.}, + Pages = {265-296}, + Title = {Motion of a sphere near planar confining boundaries in a + Brinkman medium}, + Volume = {375}, + Year = {1998} +} + +@Unpublished{ feng-weinbaum-99, + Annote = {darcy, brinkman}, + Author = {Feng, J. and Weinbaum, S.}, + code = {por5}, + Note = {submitted to J. Fluid Mech.}, + Title = {A model for flow through a planar orifice in a + fiber-filled medium with application to fenestral pores in + biological tissue}, + Year = {1999} +} + +###Unpublished{ feng-weinbaum-99, + Annote = {darcy, brinkman}, + Author = {Feng, J. and Weinbaum, S.}, + code = {por5}, + Note = {submitted to J. Fluid Mech.}, + Title = {A model for flow through a planar orifice in a + fiber-filled medium with application to fenestral pores in + biological tissue}, + Year = {1999} +} + +@Article{ fenics, + Title = {The FEniCS Project Version 1.5}, + Author = {Martin S. Aln{\ae}s and Jan Blechta and Johan Hake and + August Johansson and Benjamin Kehlet and Anders Logg and + Chris Richardson and Johannes Ring and Marie E. Rognes and + Garth N. Wells}, + Year = {2015}, + Journal = {Archive of Numerical Software}, + Volume = {3}, + Number = {100}, + DOI = {10.11588/ans.2015.100.20553}, + page = {9-23} +} + +@Article{ fenmori-covell-fletcher-weinstein-89, + Author = {Fenmori, K. and Covell, D. G. and Fletcher, J. E. and + Weinstein, J. N.}, + Journal = {Cancer Research}, + Pages = {5656-5663}, + Title = {Modeling analysis of the global and microscopic + distribution of immunoglobulin {G}, {F}(ab')$_2$ and {F}ab + in tumors}, + Volume = {49}, + Year = {1989} +} + +###Article{ fenmori-covell-fletcher-weinstein-89, + Author = {Fenmori, K. and Covell, D. G. and Fletcher, J. E. and + Weinstein, J. N.}, + Journal = {Cancer Research}, + Pages = {5656-5663}, + Title = {Modeling analysis of the global and microscopic + distribution of immunoglobulin {G}, {F}(ab')$_2$ and {F}ab + in tumors}, + Volume = {49}, + Year = {1989} +} + +@InProceedings{ fernandez-09, + Address = {Tokyo, Japan}, + Author = {Fern\'andez, M.A.}, + BookTitle = {Proc. of the 15th International Conference on Finite + Elements in Flow Problems}, + Month = {April 1--3}, + Title = {Robin based explicit coupling in fluid-structure + interaction}, + Year = {2009} +} + +###InProceedings{ fernandez-09, + Address = {Tokyo, Japan}, + Author = {Fern\'andez, M.A.}, + BookTitle = {Proc. of the 15th International Conference on Finite + Elements in Flow Problems}, + Month = {April 1--3}, + Title = {Robin based explicit coupling in fluid-structure + interaction}, + Year = {2009} +} + +@Article{ fernandez-11b, + Author = {Fern\'andez, M.-A.}, + Title = {Coupling schemes for incompressible fluid-structure + interaction: implicit, semi-implicit and explicit}, + Journal = {S$\vec{\rm e}$MA J.}, + Year = {2011}, + Number = {55}, + Pages = {59--108} +} + +###Article{ fernandez-11b, + Author = {Fern\'andez, M.-A.}, + Title = {Coupling schemes for incompressible fluid-structure + interaction: implicit, semi-implicit and explicit}, + Journal = {S$\vec{\rm e}$MA J.}, + Year = {2011}, + Number = {55}, + Pages = {59--108} +} + +@Article{ fernandez-11sema, + Author = {Fern\'andez, M.A.}, + Journal = {Bol. Soc. Esp. Mat. Apl.}, + Number = {}, + Pages = {}, + Title = {Coupling schemes for incompressible fluid-structure + interaction: implicit, semi-implicit and explicit}, + Volume = {to appear}, + Year = {2011} +} + +###Article{ fernandez-11sema, + Author = {Fern\'andez, M.A.}, + Journal = {Bol. Soc. Esp. Mat. Apl.}, + Number = {}, + Pages = {}, + Title = {Coupling schemes for incompressible fluid-structure + interaction: implicit, semi-implicit and explicit}, + Volume = {to appear}, + Year = {2011} +} + +@PhdThesis{ fernandez-89, + Author = {G. Fernandez}, + Month = {juin}, + School = {universit{\'e} de Nice}, + Title = {Simulation num{\'e}rique d'{\'e}coulements r{\'e}actifs + {\`a} petit nombre de Mach}, + Year = {1989} +} + +###PhdThesis{ fernandez-89, + Author = {G. Fernandez}, + Month = {juin}, + School = {universit{\'e} de Nice}, + Title = {Simulation num{\'e}rique d'{\'e}coulements r{\'e}actifs + {\`a} petit nombre de Mach}, + Year = {1989} +} + +@InBook{ fernandez-gerbeau-09, + Author = {Fern\'andez, M.A. and Gerbeau, J-F.}, + Title = {Fluid structure interaction problems in haemodynamics}, + Chapter = 9, + Publisher = {Springer Verlag}, + Year = {2009}, + Note = {in {\em Cardiovascular {M}athematics. {M}odeling and + simulation of the circulatory system}, L. Formaggia, A. + Quarteroni, A. Veneziani editors} +} + +@Article{ fernandez-gerbeau-grandmont-06, + Author = {Fern{\'a}ndez, M.A. and Gerbeau, J-F. and Grandmont, C.}, + Journal = {C. R. Math. Acad. Sci. Paris}, + Number = {4}, + Pages = {279--284}, + Title = {A projection algorithm for fluid-structure interaction + problems with strong added-mass effect}, + Volume = {342}, + Year = {2006} +} + +###Article{ fernandez-gerbeau-grandmont-06, + Author = {Fern{\'a}ndez, M.A. and Gerbeau, J-F. and Grandmont, C.}, + Journal = {C. R. Math. Acad. Sci. Paris}, + Number = {4}, + Pages = {279--284}, + Title = {A projection algorithm for fluid-structure interaction + problems with strong added-mass effect}, + Volume = {342}, + Year = {2006} +} + +@Article{ fernandez-gerbeau-grandmont-07, + Author = {Fern{\'a}ndez, M.A. and Gerbeau, J.F. and Grandmont, C.}, + Journal = {Int. J. Num. Meth. Engrg.}, + Number = {4}, + Pages = {794--821}, + Title = {A projection semi-implicit scheme for the coupling of an + elastic structure with an incompressible fluid}, + Volume = {69}, + Year = {2007} +} + +###Article{ fernandez-gerbeau-grandmont-07, + Author = {Fern{\'a}ndez, M.A. and Gerbeau, J.F. and Grandmont, C.}, + Journal = {Int. J. Num. Meth. Engrg.}, + Number = {4}, + Pages = {794--821}, + Title = {A projection semi-implicit scheme for the coupling of an + elastic structure with an incompressible fluid}, + Volume = {69}, + Year = {2007} +} + +@Article{ fernandez-gerbeau-martin-08, + Author = {Fern\'andez, M.A. and Gerbeau, J-F. and Martin, V.}, + Journal = {M2AN Math. Model. Numer. Anal.}, + Pages = {961--990}, + Title = {Numerical simulation of blood flows through a porous + interface}, + Volume = {42}, + Year = {2008} +} + +###Article{ fernandez-gerbeau-martin-08, + Author = {Fern\'andez, M.A. and Gerbeau, J-F. and Martin, V.}, + Journal = {M2AN Math. Model. Numer. Anal.}, + Pages = {961--990}, + Title = {Numerical simulation of blood flows through a porous + interface}, + Volume = {42}, + Year = {2008} +} + +@InProceedings{ fernandez-guillard-89, + Author = {G. Fernandez and H. Guillard}, + BookTitle = {Proceedings of the 6th Int. Conf. on Numerical methods in + laminar and turbulent flows}, + Editor = {Taylor, C. and Gresho, P. and Sani, R.L. and Hauser, J.}, + Month = {11-15 july}, + Publisher = {Pineridge Press, Swansea}, + Title = {A numerical method for the computation of low {M}ach + number reactive flows}, + Year = {1989} +} + +###InProceedings{ fernandez-guillard-89, + Author = {G. Fernandez and H. Guillard}, + BookTitle = {Proceedings of the 6th Int. Conf. on Numerical methods in + laminar and turbulent flows}, + Editor = {Taylor, C. and Gresho, P. and Sani, R.L. and Hauser, J.}, + Month = {11-15 july}, + Publisher = {Pineridge Press, Swansea}, + Title = {A numerical method for the computation of low {M}ach + number reactive flows}, + Year = {1989} +} + +@Article{ fernandez-le-tallec-03, + Author = {Fern\'andez, M.A. and Le Tallec, P.}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Title = {Linear fluid-structure stability analysis with + transpiration. Part II: numerical analysis and + applications}, + Volume = {192}, + Number = {43}, + Pages = {4837-4873}, + Year = {2003} +} + +###Article{ fernandez-le-tallec-03, + Author = {Fern\'andez, M.A. and Le Tallec, P.}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Title = {Linear fluid-structure stability analysis with + transpiration. Part II: numerical analysis and + applications}, + Volume = {192}, + Number = {43}, + Pages = {4837-4873}, + Year = {2003} +} + +@Article{ fernandez-letallec-03, + Author = {Fernandez, M. and Le Tallec, P.}, + Journal = {Comp. Meth. App. Mech.. Eng}, + Pages = {4837-4873}, + Title = {Linear fluid-structure stability analysis with + transpiration. Part II: numerical analysis and + applications}, + Volume = {192}, + Year = {2003} +} + +###Article{ fernandez-letallec-03, + Author = {Fernandez, M. and Le Tallec, P.}, + Journal = {Comp. Meth. App. Mech.. Eng}, + Pages = {4837-4873}, + Title = {Linear fluid-structure stability analysis with + transpiration. Part II: numerical analysis and + applications}, + Volume = {192}, + Year = {2003} +} + +@Article{ fernandez-moubachir-03a, + Author = {Fern{\'a}ndez, M.A. and Moubachir, M.}, + Journal = {C. R. Math. Acad. Sci. Paris}, + Number = {8}, + Pages = {681--686}, + Title = {An exact block-{N}ewton algorithm for solving + fluid-structure interaction problems}, + Volume = {336}, + Year = {2003} +} + +###Article{ fernandez-moubachir-03a, + Author = {Fern{\'a}ndez, M.A. and Moubachir, M.}, + Journal = {C. R. Math. Acad. Sci. Paris}, + Number = {8}, + Pages = {681--686}, + Title = {An exact block-{N}ewton algorithm for solving + fluid-structure interaction problems}, + Volume = {336}, + Year = {2003} +} + +@InProceedings{ fernandez-moubachir-03b, + Author = {Fern{\'a}ndez, M.A. and Moubachir, M.}, + BookTitle = {Second M.I.T. Conference on Computational Fluid and Solid + Mechanics}, + code = {fsi8}, + Editor = {K.J. Bathe}, + Pages = {1337-1341}, + Publisher = {Elsevier}, + Title = {An exact Block-Newton algorithm for the solution of + implicit time discretized coupled systems involved in + fluid-structure interaction problems}, + Year = {2003} +} + +###InProceedings{ fernandez-moubachir-03b, + Author = {Fern{\'a}ndez, M.A. and Moubachir, M.}, + BookTitle = {Second M.I.T. Conference on Computational Fluid and Solid + Mechanics}, + code = {fsi8}, + Editor = {K.J. Bathe}, + Pages = {1337-1341}, + Publisher = {Elsevier}, + Title = {An exact Block-Newton algorithm for the solution of + implicit time discretized coupled systems involved in + fluid-structure interaction problems}, + Year = {2003} +} + +@InProceedings{ fernandez-moubachir-04, + Address = {Jyv{\"a}skyl{\"a}, Finland}, + Author = {Fern{\'a}ndez, M. A. and Moubachir, M.}, + BookTitle = {4$^{\mathrm{th}}$ European Congress on Computational + Methods in Applied Sciences and Engineering}, + Editor = {Neittaanm{\"a}ki, P and Rossi, T. and Majava, K. and + Pironneau, O.}, + Month = {July}, + Title = {Numerical Simulation of Fluid-structure Systems via + {N}ewton's Method with Exact {J}acobians}, + Volume = {1}, + Year = {2004} +} + +###InProceedings{ fernandez-moubachir-04, + Address = {Jyv{\"a}skyl{\"a}, Finland}, + Author = {Fern{\'a}ndez, M. A. and Moubachir, M.}, + BookTitle = {4$^{\mathrm{th}}$ European Congress on Computational + Methods in Applied Sciences and Engineering}, + Editor = {Neittaanm{\"a}ki, P and Rossi, T. and Majava, K. and + Pironneau, O.}, + Month = {July}, + Title = {Numerical Simulation of Fluid-structure Systems via + {N}ewton's Method with Exact {J}acobians}, + Volume = {1}, + Year = {2004} +} + +@Article{ fernandez-moubachir-05, + Author = {Fern{\'a}ndez, M.A. and Moubachir, M.}, + Journal = {Comp. \& Struct.}, + Pages = {127-142}, + Title = {A {N}ewton method using exact {Jacobians} for solving + fluid-structure coupling}, + Volume = {83}, + Year = {2005} +} + +###Article{ fernandez-moubachir-05, + Author = {Fern{\'a}ndez, M.A. and Moubachir, M.}, + Journal = {Comp. \& Struct.}, + Pages = {127-142}, + Title = {A {N}ewton method using exact {Jacobians} for solving + fluid-structure coupling}, + Volume = {83}, + Year = {2005} +} + +@Unpublished{ fernandez-moura-vergara-05, + Author = {Fern\'{a}ndez, M. and Moura, A. and Vergara, C.}, + Note = {in this proceedings}, + Title = {Defective boundary conditions applied to multiscale + analysis of blood flow} +} + +###Unpublished{ fernandez-moura-vergara-05, + Author = {Fern\'{a}ndez, M. and Moura, A. and Vergara, C.}, + Note = {in this proceedings}, + Title = {Defective boundary conditions applied to multiscale + analysis of blood flow} +} + +@Article{ fernandez07_semiimplicit, + Author = "Fern\'{a}ndez, M.~A. and Gerbeau, J.-F. and Grandmont, C.", + Title = "A projection semi-implicit scheme for the coupling of an + elastic structure with an incompressible fluid", + Journal = ijnme, + Volume = "69", + Number = "4", + Pages = "794--821", + Year = "2007" +} + +###Article{ fernandez07_semiimplicit, + Author = "Fern\'{a}ndez, M.~A. and Gerbeau, J.-F. and Grandmont, C.", + Title = "A projection semi-implicit scheme for the coupling of an + elastic structure with an incompressible fluid", + Journal = ijnme, + Volume = "69", + Number = "4", + Pages = "794--821", + Year = "2007" +} + +@Article{ fernandez1982, + Title = {Myocardial fiber architecture of the human heart + ventricles}, + Author = {Fernandez-Teran, M.A. and Hurle, J.M.}, + Journal = {The Anatomical Record}, + Volume = {204}, + Number = {2}, + Pages = {137--147}, + Year = {1982}, + Publisher = {Wiley Online Library} +} + +@Article{ fernandez2007projection, + Title = {A projection semi-implicit scheme for the coupling of an + elastic structure with an incompressible fluid}, + Author = {Fern{\'a}ndez, Miguel Angel and Gerbeau, J-F and + Grandmont, C{\'e}line}, + Journal = {International Journal for Numerical Methods in + Engineering}, + Volume = {69}, + Number = {4}, + Pages = {794--821}, + Year = {2007}, + Publisher = {Wiley Online Library} +} + +@Article{ fernandez2015fully, + Title = {Fully decoupled time-marching schemes for incompressible + fluid/thin-walled structure interaction}, + Author = {Fern{\'a}ndez, Miguel A and Landajuela, Mikel and + Vidrascu, Marina}, + Journal = {Journal of Computational Physics}, + Volume = {297}, + Pages = {156--181}, + Year = {2015}, + Publisher = {Elsevier} +} + +@InCollection{ fernandez_derivation_2009, + langid = {english}, + Location = {{Milano}}, + Title = {The Derivation of the Equations for Fluids and Structure}, + ISBN = {978-88-470-1152-6}, + URL = {https://doi.org/10.1007/978-88-470-1152-6_3}, + Abstract = {In this chapter we derive the equations governing the + mechanics of the fluid (the blood) and the structure (the + vessel wall). The derivation will be made in a rigorous + way, yet trying to provide the reader a physical + understanding. Reason of space obliged us to focus on the + most important models for haemodynamic computations and to + omit several details and the proofs of the propositions. + For instance, all issues related to energy conservation + principles have been ignored and we have eventually + considered only incompressible fluids.}, + BookTitle = {Cardiovascular {{Mathematics}}: {{Modeling}} and + Simulation of the Circulatory System}, + Series = {{{MS}}\&{{A}}}, + Publisher = {{Springer Milan}}, + URLDate = {2019-02-17}, + Year = {2009}, + Pages = {77-121}, + Author = {Fernández, Miguel A. and Formaggia, Luca and Gerbeau, + Jean-Frederic and Quarteroni, Alfio}, + Editor = {Formaggia, Luca and Quarteroni, Alfio and Veneziani, + Alessandro}, + DOI = {10.1007/978-88-470-1152-6_3} +} + +@Article{ fernandez_linear_2003, + langid = {english}, + Title = {Linear Stability Analysis in Fluid–Structure Interaction + with Transpiration. {{Part I}}: {{Formulation}} and + Mathematical Analysis}, + Volume = {192}, + ISSN = {00457825}, + URL = {https://linkinghub.elsevier.com/retrieve/pii/S0045782503004614}, + DOI = {10.1016/j.cma.2003.07.001}, + ShortTitle = {Linear Stability Analysis in Fluid–Structure Interaction + with Transpiration. {{Part I}}}, + Abstract = {The aim of this work is to provide a new Linearization + Principle approach particularly suited for problems in + fluid–structure stability. The complexity here, and the + main difference with respect to the classical approach, + comes from the fact that the full non-linear fluid + equations are written in a moving (i.e. time dependent) + domain. The underlying idea of our approach uses + transpiration techniques [J. Fluid Mech. 4 (1958) 383; G. + Mortch el ewicz, Application of linearized Euler equations + to flutter, in: 85th AGARD SMP Meeting, Aalborg, Denmark, + 1997; P. Raj, B. Harris, Using surface transpiration with + an Euler method for cost-effective aerodynamic analysis, + in: AIAA 24th Applied Aerodynamics Conference, number + 93-3506, Monterey, Canada, 1993; AIAA 27(6) (1989) 777], + with the formalization and linearization recently developed + in [R ev. Europ eenne E l em. Finis, 9(6–7) (2000) 681, + A. Dervieux (Ed.), Fluid–Structure Interaction, Kogan + Page Science, London, 2003 (Chapter 3)]. This allows us to + obtain a new grid independent coupled spectral problem + involving the linearized Navier–Stokes equations and + those of a reduced linear structure. The coupling is + realized through specific transpiration conditions acting + on a fixed interface, while keeping a fixed fluid + domain. We provide a rigorous mathematical treatment of + this eigenproblem. We prove that the corresponding + eigenmodes, characterizing the free evolution of the + system, can be obtained from the characteristic values of a + compact operator acting on a Hilbert space. Moreover, we + localize the eigenfrequencies of the system in a parabolic + region of the complex plan centered along the positive real + axis.}, + Number = {43}, + JournalTitle = {Computer Methods in Applied Mechanics and Engineering}, + URLDate = {2019-08-24}, + Date = {2003-10}, + Pages = {4805-4835}, + Author = {Fernández, Miguel Ángel and Le Tallec, Patrick} +} + +@Article{ fernandez_projection_2007, + Title = {A Projection Semi-Implicit Scheme for the Coupling of an + Elastic Structure with an Incompressible Fluid}, + Volume = {69}, + Number = {4}, + JournalTitle = {International Journal for Numerical Methods in + Engineering}, + Date = {2007}, + Pages = {794-821}, + Author = {Fernández, Miguel Angel and Gerbeau, J-F and Grandmont, + Celine}, + Publisher = {{Wiley Online Library}} +} + +@Article{ fernandezgerbeaumartin08, + Author = "Fern\'{a}ndez, M.~A. and Gerbeau, J.-F. and Martin, V.", + Title = "Numerical Simulation of blood flows through a porous + interface", + Journal = m2an, + Volume = "42", + Number = "6", + Pages = "961--990", + Year = "2008" +} + +###Article{ fernandezgerbeaumartin08, + Author = "Fern\'{a}ndez, M.~A. and Gerbeau, J.-F. and Martin, V.", + Title = "Numerical Simulation of blood flows through a porous + interface", + Journal = m2an, + Volume = "42", + Number = "6", + Pages = "961--990", + Year = "2008" +} + +@Article{ ferreira2014jcmr, + Title = {In vivo cardiovascular magnetic resonance diffusion tensor + imaging shows evidence of abnormal myocardial laminar + orientations and mobility in hypertrophic cardiomyopathy.}, + Author = {Ferreira, Pedro F. and Kilner, Philip J. and McGill, + Laura-Ann and Nielles-Vallespin, Sonia and Scott, Andrew D. + and Ho, Siew Y. and McCarthy, Karen P. and Haba, Margarita + M. and Ismail, Tevfik F. and Gatehouse, Peter D. and {de + Silva}, Ranil and Lyon, Alexander R. and Prasad, Sanjay K. + and Firmin, David N. and Pennell, Dudley J.}, + Journal = {J Cardiovasc Magn Reson}, + Year = {2014}, + Pages = {87}, + Volume = {16}, + Abstract = {Cardiac diffusion tensor imaging (cDTI) measures the + magnitudes and directions of intramyocardial water + diffusion. Assuming the cross-myocyte components to be + constrained by the laminar microstructures of myocardium, + we hypothesized that cDTI at two cardiac phases might + identify any abnormalities of laminar orientation and + mobility in hypertrophic cardiomyopathy (HCM).We performed + cDTI in vivo at 3 Tesla at end-systole and late diastole in + 11 healthy controls and 11 patients with HCM, as well as + late gadolinium enhancement (LGE) for detection of regional + fibrosis.Voxel-wise analysis of diffusion tensors relative + to left ventricular coordinates showed expected transmural + changes of myocardial helix-angle, with no significant + differences between phases or between HCM and control + groups. In controls, the angle of the second eigenvector of + diffusion (E2A) relative to the local wall tangent plane + was larger in systole than diastole, in accord with + previously reported changes of laminar orientation. HCM + hearts showed higher than normal global E2A in systole + (63.9° vs 56.4° controls, p=0.026) and markedly raised + E2A in diastole (46.8° vs 24.0° controls, p<0.001). In + hypertrophic regions, E2A retained a high, systole-like + angulation even in diastole, independent of LGE, while + regions of normal wall thickness did not (LGE present + 57.8°, p=0.0028, LGE absent 54.8°, p=0.0022 vs normal + thickness 38.1°).In healthy controls, the angles of + cross-myocyte components of diffusion were consistent with + previously reported transmural orientations of laminar + microstructures and their changes with contraction. In HCM, + especially in hypertrophic regions, they were consistent + with hypercontraction in systole and failure of relaxation + in diastole. Further investigation of this finding is + required as previously postulated effects of strain might + be a confounding factor.}, + DOI = {10.1186/s12968-014-0087-8}, + Institution = {pton Hospital and Imperial College, London, UK. + d.firmin@ic.ac.uk.}, + Keywords = {Aged; Cardiomyopathy, Hypertrophic, + diagnosis/pathology/physiopathology; Case-Control Studies; + Diffusion Magnetic Resonance Imaging; Diffusion Tensor + Imaging; Female; Fibrosis; Humans; Image Interpretation, + Computer-Assisted; Magnetic Resonance Imaging, Cine; Male; + Middle Aged; Myocardial Contraction; Myocardium, pathology; + Predictive Value of Tests; Ventricular Function, Left}, + Language = {eng}, + medline-pst = {epublish}, + owner = {stoeckc}, + pii = {s12968-014-0087-8}, + pmid = {25388867}, + timestamp = {2015.07.24}, + URL = {http://dx.doi.org/10.1186/s12968-014-0087-8} +} + +@Article{ ferruzzi2011on, + Title = {On constitutive descriptors of the biaxial mechanical + behaviour of human abdominal aorta and aneurysms.}, + Author = {Ferruzzi, J. and Vorp, D.A. and Humphrey, J.D.}, + Journal = {Journal of the Royal Society Interface}, + Volume = {8}, + Number = {56}, + Pages = {435-50}, + Year = {2011}, + Abstract = {The abdominal aorta (AA) in older individuals can develop + an aneurysm, which is of increasing concern in our ageing + population. The structural integrity of the ageing aortic + wall, and hence aneurysm, depends primarily on effective + elastin and multiple families of oriented collagen fibres. + In this paper, we show that a structurally motivated + phenomenological 'four-fibre family' constitutive relation + captures the biaxial mechanical behaviour of both the human + AA, from ages less than 30 to over 60, and abdominal aortic + aneurysms. Moreover, combining the statistical technique + known as non-parametric bootstrap with a modal clustering + method provides improved confidence intervals for estimated + best-fit values of the eight associated constitutive + parameters. It is suggested that this constitutive relation + captures the well-known loss of structural integrity of + elastic fibres owing to ageing and the development of + abdominal aneurysms, and that it provides important insight + needed to construct growth and remodelling models for + aneurysms, which in turn promise to improve our ability to + predict disease progression. } +} + +###Article{ ferruzzi2011on, + Title = {On constitutive descriptors of the biaxial mechanical + behaviour of human abdominal aorta and aneurysms.}, + Author = {Ferruzzi, J. and Vorp, D.A. and Humphrey, J.D.}, + Journal = {Journal of the Royal Society Interface}, + Volume = {8}, + Number = {56}, + Pages = {435-50}, + Year = {2011}, + Abstract = {The abdominal aorta (AA) in older individuals can develop + an aneurysm, which is of increasing concern in our ageing + population. The structural integrity of the ageing aortic + wall, and hence aneurysm, depends primarily on effective + elastin and multiple families of oriented collagen fibres. + In this paper, we show that a structurally motivated + phenomenological 'four-fibre family' constitutive relation + captures the biaxial mechanical behaviour of both the human + AA, from ages less than 30 to over 60, and abdominal aortic + aneurysms. Moreover, combining the statistical technique + known as non-parametric bootstrap with a modal clustering + method provides improved confidence intervals for estimated + best-fit values of the eight associated constitutive + parameters. It is suggested that this constitutive relation + captures the well-known loss of structural integrity of + elastic fibres owing to ageing and the development of + abdominal aneurysms, and that it provides important insight + needed to construct growth and remodelling models for + aneurysms, which in turn promise to improve our ability to + predict disease progression. } +} + +@Article{ fezoui-85, + Author = {Fezoui, F.}, + Journal = {Research report INRIA}, + Title = {R{\'e}solution des {\'e}quations d'{E}uler par un + sch{\'e}ma de van {L}eer en {\'e}l{\'e}ments finis}, + Volume = {358}, + Year = {1985} +} + +###Article{ fezoui-85, + Author = {Fezoui, F.}, + Journal = {Research report INRIA}, + Title = {R{\'e}solution des {\'e}quations d'{E}uler par un + sch{\'e}ma de van {L}eer en {\'e}l{\'e}ments finis}, + Volume = {358}, + Year = {1985} +} + +@Unpublished{ figueroa-vignon-kenneth-jansen-hughes-taylor-xx, + Author = {Figueroa, A. and Vignon-Clementel, I. and Jansen, K.E. and + Hughes, T.J.R. and Taylor, C.A.}, + Note = { To appear in {\it Comput. Methods Appl. Mech. Engrg.}}, + Title = {A coupled momentum method for modeling blood flow in + three-dimensional deformable arteries} +} + +###Unpublished{ figueroa-vignon-kenneth-jansen-hughes-taylor-xx, + Author = {Figueroa, A. and Vignon-Clementel, I. and Jansen, K.E. and + Hughes, T.J.R. and Taylor, C.A.}, + Note = { To appear in {\it Comput. Methods Appl. Mech. Engrg.}}, + Title = {A coupled momentum method for modeling blood flow in + three-dimensional deformable arteries} +} + +@Article{ figueroa2009cmame, + Title = {A computational framework for fluid?solid-growth modeling + in cardiovascular simulations }, + Author = {C. Alberto Figueroa and Seungik Baek and Charles A. Taylor + and Jay D. Humphrey}, + Journal = {Computer Methods in Applied Mechanics and Engineering }, + Year = {2009}, + Note = {Models and Methods in Computational Vascular and + Cardiovascular Mechanics }, + Number = {45?46}, + Pages = {3583 - 3602}, + Volume = {198}, + Abstract = {It is now well known that altered hemodynamics can alter + the genes that are expressed by diverse vascular cells, + which in turn plays a critical role in the ability of a + blood vessel to adapt to new biomechanical conditions and + governs the natural history of the progression of many + types of disease. Fortunately, when taken together, recent + advances in molecular and cell biology, in vivo medical + imaging, biomechanics, computational mechanics, and + computing power provide an unprecedented opportunity to + begin to understand such hemodynamic effects on vascular + biology, physiology, and pathophysiology. Moreover, with + increased understanding will come the promise of improved + designs for medical devices and clinical interventions. The + goal of this paper, therefore, is to present a new + computational framework that brings together recent + advances in computational biosolid and biofluid mechanics + that can exploit new information on the biology of vascular + growth and remodeling as well as in vivo patient- specific + medical imaging so as to enable realistic simulations of + vascular adaptations, disease progression, and clinical + intervention. }, + DOI = {http://dx.doi.org/10.1016/j.cma.2008.09.013}, + File = {figueroa09.pdf:figueroa09.pdf:PDF}, + ISSN = {0045-7825}, + Keywords = {Artery}, + timestamp = {2015/09/22}, + URL = {http://www.sciencedirect.com/science/article/pii/S004578250800340X} +} + +@Article{ figueroa_coupled_2006, + langid = {english}, + Title = {A Coupled Momentum Method for Modeling Blood Flow in + Three-Dimensional Deformable Arteries}, + Volume = {195}, + ISSN = {00457825}, + URL = {https://linkinghub.elsevier.com/retrieve/pii/S004578250500513X}, + DOI = {10.1016/j.cma.2005.11.011}, + Abstract = {Blood velocity and pressure fields in large arteries are + greatly influenced by the deformability of the vessel. + Moreover, wave propagation phenomena in the cardiovascular + system can only be described considering wall deformability + since blood is usually described as an incompressible + fluid. However, computational methods for simulating blood + flow in three-dimensional models of arteries have either + considered a rigid wall assumption for the vessel or + significantly simplified or reduced geometries. Computing + blood flow in deformable domains using standard techniques + like the ALE method remains a formidable problem for large, + realistic anatomic and physiologic models of the + cardiovascular system.}, + Number = {41-43}, + JournalTitle = {Computer Methods in Applied Mechanics and Engineering}, + URLDate = {2019-08-24}, + Date = {2006-08}, + Pages = {5685-5706}, + Author = {Figueroa, C. Alberto and Vignon-Clementel, Irene E. and + Jansen, Kenneth E. and Hughes, Thomas J.R. and Taylor, + Charles A.} +} + +@Article{ fleming-97, + Author = {Fleming, Wendell H.}, + Journal = {Annali della Scuola Normale Superiore di Pisa - Classe di + Scienze}, + Pages = {435--454}, + Title = {Deterministic nonlinear filtering}, + Volume = {25}, + Year = {1997} +} + +###Article{ fleming-97, + Author = {Fleming, Wendell H.}, + Journal = {Annali della Scuola Normale Superiore di Pisa - Classe di + Scienze}, + Pages = {435--454}, + Title = {Deterministic nonlinear filtering}, + Volume = {25}, + Year = {1997} +} + +@Article{ foias-saut-84, + Author = {Foias, C. and Saut, J.C.}, + Journal = {Ind. Univ. Math. J.}, + Number = {3}, + Pages = {459-471}, + Title = {Asymptotic behaviour, as $t\longrightarrow+\infty$ of + solutions of {Navier-Stokes} equations and nonlinear + spectral manifolds}, + Volume = {33}, + Year = {1984} +} + +###Article{ foias-saut-84, + Author = {Foias, C. and Saut, J.C.}, + Journal = {Ind. Univ. Math. J.}, + Number = {3}, + Pages = {459-471}, + Title = {Asymptotic behaviour, as $t\longrightarrow+\infty$ of + solutions of {Navier-Stokes} equations and nonlinear + spectral manifolds}, + Volume = {33}, + Year = {1984} +} + +@Article{ fomovsky2010jmcc, + Title = {Contribution of extracellular matrix to the mechanical + properties of the heart }, + Author = {Gregory M. Fomovsky and Stavros Thomopoulos and Jeffrey W. + Holmes}, + Journal = {Journal of Molecular and Cellular Cardiology }, + Year = {2010}, + Note = {Special Issue: Extracellular Matrix }, + Number = {3}, + Pages = {490 - 496}, + Volume = {48}, + Abstract = {Extracellular matrix (ECM) components play essential roles + in development, remodeling, and signaling in the + cardiovascular system. They are also important in + determining the mechanics of blood vessels, valves, + pericardium, and myocardium. The goal of this brief review + is to summarize available information regarding the + mechanical contributions of \{ECM\} in the myocardium. + Fibrillar collagen, elastin, and proteoglycans all play + crucial mechanical roles in many tissues in the body + generally and in the cardiovascular system specifically. + The myocardium contains all three components, but their + mechanical contributions are relatively poorly understood. + Most studies of \{ECM\} contributions to myocardial + mechanics have focused on collagen, but quantitative + prediction of mechanical properties of the myocardium, or + changes in those properties with disease, from measured + tissue structure is not yet possible. Circumstantial + evidence suggests that the mechanics of cardiac elastin and + proteoglycans merit further study. Work in other tissues + used a combination of correlation, modification or + digestion, and mathematical modeling to establish + mechanical roles for specific \{ECM\} components; this work + can provide guidance for new experiments and modeling + studies in myocardium. }, + DOI = {http://dx.doi.org/10.1016/j.yjmcc.2009.08.003}, + File = {fomovsky10.pdf:fomovsky10.pdf:PDF}, + ISSN = {0022-2828}, + Keywords = {Collagen}, + timestamp = {2015/09/23}, + URL = {http://www.sciencedirect.com/science/article/pii/S0022282809003253} +} + +@Article{ formaggia-gerbeau-nobile-quarteroni-01, + Author = {Formaggia, L. and Gerbeau, J-F. and Nobile, F. and + Quarteroni, A.}, + Journal = {Comp. Meth. Appl. Mech. Engrg.}, + Number = {6-7}, + Pages = {561-582}, + Title = {On the Coupling of {3D} and {1D} {Navier-Stokes} equations + for Flow Problems in Compliant Vessels}, + Volume = {191}, + Year = {2001} +} + +###Article{ formaggia-gerbeau-nobile-quarteroni-01, + Author = {Formaggia, L. and Gerbeau, J-F. and Nobile, F. and + Quarteroni, A.}, + Journal = {Comp. Meth. Appl. Mech. Engrg.}, + Number = {6-7}, + Pages = {561-582}, + Title = {On the Coupling of {3D} and {1D} {Navier-Stokes} equations + for Flow Problems in Compliant Vessels}, + Volume = {191}, + Year = {2001} +} + +@Article{ formaggia-gerbeau-nobile-quarteroni-02, + Author = {Formaggia, L. and Gerbeau, J-F. and Nobile, F. and + Quarteroni, A.}, + Journal = {SIAM J. Numerical Analysis}, + Number = {1}, + Pages = {376-401}, + Title = {Numerical treatment of defective boundary conditions for + the {Navier-Stokes} equations}, + Volume = {40}, + Year = {2002} +} + +###Article{ formaggia-gerbeau-nobile-quarteroni-02, + Author = {Formaggia, L. and Gerbeau, J-F. and Nobile, F. and + Quarteroni, A.}, + Journal = {SIAM J. Numerical Analysis}, + Number = {1}, + Pages = {376-401}, + Title = {Numerical treatment of defective boundary conditions for + the {Navier-Stokes} equations}, + Volume = {40}, + Year = {2002} +} + +@Article{ formaggia-lamponi-quarteroni-2003, + Title = {One-dimensional models for blood flow in arteries}, + Volume = {47}, + Number = {3}, + Journal = {Journal of Engineering Mathematics}, + Publisher = {Springer}, + Author = {Formaggia, L. and Lamponi, D. and Quarteroni, A.}, + Year = {2003}, + Pages = {251--276} +} + +###Article{ formaggia-lamponi-quarteroni-2003, + Title = {One-dimensional models for blood flow in arteries}, + Volume = {47}, + URL = {http://www.springerlink.com/openurl.asp?id=doi:10.1023/B:ENGI.0000007980.01347.29}, + Number = {3}, + Journal = {Journal of Engineering Mathematics}, + Publisher = {Springer}, + Author = {Formaggia, L. and Lamponi, D. and Quarteroni, A.}, + Year = {2003}, + Pages = {251--276} +} + +@Article{ formaggia-moura-nobile-07, + Author = {Formaggia, L. and Moura, A. and Nobile, F.}, + Journal = {ESAIM-Mathematical Modelling and Numerical Analysis}, + Number = {4}, + Pages = {743--770}, + Publisher = {Paris: EDP Sciences, SMAI, c1999-}, + Title = {On the stability of the coupling of 3D and 1D + fluid-structure interaction models for blood flow + simulations}, + Volume = {41}, + Year = {2007} +} + +###Article{ formaggia-moura-nobile-07, + Author = {Formaggia, L. and Moura, A. and Nobile, F.}, + Journal = {ESAIM-Mathematical Modelling and Numerical Analysis}, + Number = {4}, + Pages = {743--770}, + Publisher = {Paris: EDP Sciences, SMAI, c1999-}, + Title = {On the stability of the coupling of 3D and 1D + fluid-structure interaction models for blood flow + simulations}, + Volume = {41}, + Year = {2007} +} + +@Article{ formaggia-nobile-99, + Author = {Formaggia, L. and Nobile, F.}, + code = {mob9}, + Journal = {East-West J. Numer. Math.}, + Number = {2}, + Pages = {105--131}, + Title = {A stability analysis for the arbitrary {L}agrangian + {E}ulerian formulation with finite elements}, + Volume = {7}, + Year = {1999} +} + +###Article{ formaggia-nobile-99, + Author = {Formaggia, L. and Nobile, F.}, + code = {mob9}, + Journal = {East-West J. Numer. Math.}, + Number = {2}, + Pages = {105--131}, + Title = {A stability analysis for the arbitrary {L}agrangian + {E}ulerian formulation with finite elements}, + Volume = {7}, + Year = {1999} +} + +@Book{ formaggia-quarteroni-veneziani-09, + Editor = {Formaggia, L. and Quarteroni, A. and Veneziani, A.}, + Publisher = {Springer}, + Series = {Modeling, Simulation and Applications}, + Title = {Cardiovascular {M}athematics. {M}odeling and simulation of + the circulatory system}, + Volume = {1}, + Year = {2009} +} + +###Book{ formaggia-quarteroni-veneziani-09, + Editor = {Formaggia, L. and Quarteroni, A. and Veneziani, A.}, + Publisher = {Springer}, + Series = {Modeling, Simulation and Applications}, + Title = {Cardiovascular {M}athematics. {M}odeling and simulation of + the circulatory system}, + Volume = {1}, + Year = {2009} +} + +@InBook{ formaggia2009book, + Author = {Formaggia, L. and Quarteroni, A. and Veneziani, A.}, + date-modified = {2012-05-01 13:06:48 +0000}, + Title = {Cardiovascular Mathematics. Modeling and simulation of the + circulatory system}, + Year = {2009}, + Publisher = {Springer}, + Volume = {1} +} + +@Book{ formaggia2010cardiovascular, + Title = {Cardiovascular Mathematics: Modeling and simulation of the + circulatory system}, + Author = {Formaggia, Luca and Quarteroni, Alfio and Veneziani, + Alessandro}, + Volume = {1}, + Year = {2010}, + Publisher = {Springer Science \& Business Media} +} + +@Collection{ formaggia_cardiovascular_2009, + langid = {english}, + Location = {{Milano}}, + Title = {Cardiovascular {{Mathematics}}}, + ISBN = {978-88-470-1151-9 978-88-470-1152-6}, + URL = {http://link.springer.com/10.1007/978-88-470-1152-6}, + Publisher = {{Springer Milan}}, + URLDate = {2019-02-17}, + Date = {2009}, + Editor = {Formaggia, Luca and Quarteroni, Alfio and Veneziani, + Alessandro}, + DOI = {10.1007/978-88-470-1152-6} +} + +###Collection{ formaggia_cardiovascular_2009, + langid = {english}, + Location = {{Milano}}, + Title = {Cardiovascular {{Mathematics}}}, + ISBN = {978-88-470-1151-9 978-88-470-1152-6}, + URL = {http://link.springer.com/10.1007/978-88-470-1152-6}, + Publisher = {{Springer Milan}}, + URLDate = {2019-02-17}, + Year = {2009}, + Editor = {Formaggia, Luca and Quarteroni, Alfio and Veneziani, + Alessandro}, + DOI = {10.1007/978-88-470-1152-6} +} + +@InCollection{ formaggia_multiscale_2009, + langid = {english}, + Location = {{Milano}}, + Title = {Multiscale Models of the Vascular System}, + ISBN = {978-88-470-1152-6}, + URL = {https://doi.org/10.1007/978-88-470-1152-6_11}, + Abstract = {As we have illustrated in the previous chapters, there are + essentially three classes of models for the vascular + system: fully three dimensional models, based on the + Navier-Stokes (NS) equations, one dimensional models, + including the space dependence on the vessel axial + coordinate, based on the Euler (E) equations, and the + lumped parameter or zero-dimensional models, based on the + Kirchhoff laws (K) for hydraulic networks. Navier-Stokes + based models can account for many different features of + blood flow problems, such as the blood rheology (Chapter + 6), the vascular wall dynamics (Chapter 3), the interaction + between blood flow and wall deformation (Chapters 8 and 9). + These models are perfectly adequate for investigating + qualitatively and quantitatively the effects of the + geometry on the blood flow (Chapters 5) and the possible + relations between local haemodynamics and the development + of some pathologies (Chapter 1). On the other hand, the + high computational costs (Chapters 2, 3 and 9) restrict + their use to cover few contiguous vascular districts + only.}, + BookTitle = {Cardiovascular {{Mathematics}}: {{Modeling}} and + Simulation of the Circulatory System}, + Series = {{{MS}}\&{{A}}}, + Publisher = {{Springer Milan}}, + URLDate = {2019-02-18}, + Year = {2009}, + Pages = {395-446}, + Author = {Formaggia, Luca and Quarteroni, Alfio and Veneziani, + Alessandro}, + Editor = {Formaggia, Luca and Quarteroni, Alfio and Veneziani, + Alessandro}, + DOI = {10.1007/978-88-470-1152-6_11} +} + +@Article{ formaggia_new_2008, + Title = {A New Approach to Numerical Solution of Defective Boundary + Value Problems in Incompressible Fluid Dynamics}, + Volume = {46}, + Number = {6}, + JournalTitle = {SIAM Journal on Numerical Analysis}, + Year = {2008}, + Pages = {2769--2794}, + Author = {Formaggia, Luca and Veneziani, Alessandro and Vergara, + Christian} +} + +@Article{ formaggia_numerical_2002, + Title = {Numerical Treatment of Defective Boundary Conditions for + the Navier-Stokes Equations}, + Volume = {40}, + Number = {1}, + JournalTitle = {SIAM Journal on Numerical Analysis}, + Year = {2002}, + Pages = {376--401}, + Author = {Formaggia, Luca and Gerbeau, Jean-Frederic and Nobile, + Fabio and Quarteroni, Alfio} +} + +@Article{ formaggia_numerical_2006, + Title = {Numerical Modeling of {{1D}} Arterial Networks Coupled + with a Lumped Parameters Description of the Heart}, + Volume = {9}, + Number = {5}, + JournalTitle = {Computer methods in biomechanics and biomedical + engineering}, + Year = {2006}, + Pages = {273--288}, + Author = {Formaggia, Luca and Lamponi, Daniele and Tuveri, + Massimiliano and Veneziani, Alessandro} +} + +@Article{ forster-wall-ramm-07, + Author = {F{\"o}rster, C. and Wall, W.A. and Ramm, E.}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Number = {7}, + Pages = {1278--1293}, + Title = {Artificial added mass instabilities in sequential + staggered coupling of nonlinear structures and + incompressible viscous flows}, + Volume = {196}, + Year = {2007} +} + +###Article{ forster-wall-ramm-07, + Author = {F{\"o}rster, C. and Wall, W.A. and Ramm, E.}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Number = {7}, + Pages = {1278--1293}, + Title = {Artificial added mass instabilities in sequential + staggered coupling of nonlinear structures and + incompressible viscous flows}, + Volume = {196}, + Year = {2007} +} + +@Article{ foss-brady-00, + Author = {Foss, D.R. and Brady,J-F.}, + code = {cel16}, + Journal = {J. Fluid Mech.}, + Pages = {167-200}, + Title = {Structure, diffusion and rheology of Brownian suspensions + by Stokesian Dynamics simulation}, + Volume = {407}, + Year = {2000} +} + +###Article{ foss-brady-00, + Author = {Foss, D.R. and Brady,J-F.}, + code = {cel16}, + Journal = {J. Fluid Mech.}, + Pages = {167-200}, + Title = {Structure, diffusion and rheology of Brownian suspensions + by Stokesian Dynamics simulation}, + Volume = {407}, + Year = {2000} +} + +@Article{ fraccarollo12cardio, + Title = {Novel therapeutic approaches to post-infarction + remodelling}, + Author = {Fraccarollo, Daniela and Galuppo, Paolo and Bauersachs, + Johann}, + Journal = {Cardiovascular Research}, + Year = {2012}, + Abstract = {Adverse cardiac remodelling is a major cause of morbidity + and mortality following acute myocardial infarction (MI). + Mechanical and neurohumoral factors involved in structural + and molecular post-infarction remodelling were important + targets in research and treatment for years. More recently, + therapeutic strategies that address myocardial regeneration + and pathophysiological mechanisms of infarct wound healing + appear to be useful novel tools to prevent progressive + ventricular dilation, functional deterioration, + life-threatening arrhythmia, and heart failure. This review + provides an overview of future and emerging therapies for + cardiac wound healing and remodelling after MI.}, + DOI = {10.1093/cvr/cvs109}, + File = {fraccarollo12.pdf:fraccarollo12.pdf:PDF}, + ISSN = {0008-6363}, + Publisher = {The Oxford University Press}, + timestamp = {2014/09/17} +} + +@Article{ franca-dutra-do-carmo-89, + Author = {Franca, L.P. and Dutra do Carmo, E.G.}, + Journal = {Comp. Meth. Appl. Mech. Eng.}, + Pages = {41-54}, + Title = {The {Galerkin} gradient least-squares method}, + Volume = {74}, + Year = {1989} +} + +###Article{ franca-dutra-do-carmo-89, + Author = {Franca, L.P. and Dutra do Carmo, E.G.}, + Journal = {Comp. Meth. Appl. Mech. Eng.}, + Pages = {41-54}, + Title = {The {Galerkin} gradient least-squares method}, + Volume = {74}, + Year = {1989} +} + +@Article{ franca-frey-92, + Author = {Franca, L.P. and Frey, S.L.}, + Journal = {Comp. Meth. Appl. Mech. Eng.}, + Pages = {209-233}, + Title = {{Stabilized finite element methods~: II. The + incompressible Navier-Stokes equations}}, + Volume = {99}, + Year = {1992} +} + +###Article{ franca-frey-92, + Author = {Franca, L.P. and Frey, S.L.}, + Journal = {Comp. Meth. Appl. Mech. Eng.}, + Pages = {209-233}, + Title = {{Stabilized finite element methods~: II. The + incompressible Navier-Stokes equations}}, + Volume = {99}, + Year = {1992} +} + +@Article{ franca-frey-hughes-92, + Author = {Franca, L.P. and Frey, S.L. and Hughes, T.J.R.}, + Journal = {Comp. Meth. Appl. Mech. Eng.}, + Pages = {253-276}, + Title = {{Stabilized finite element methods~: I. Application to the + advective-diffusive model}}, + Volume = {95}, + Year = {1992} +} + +###Article{ franca-frey-hughes-92, + Author = {Franca, L.P. and Frey, S.L. and Hughes, T.J.R.}, + Journal = {Comp. Meth. Appl. Mech. Eng.}, + Pages = {253-276}, + Title = {{Stabilized finite element methods~: I. Application to the + advective-diffusive model}}, + Volume = {95}, + Year = {1992} +} + +@Article{ franca-hughes-93, + Author = {Franca, L.P. and Hughes, T.J.R.}, + Journal = {Comp. Meth. Appl. Mech. Eng.}, + Pages = {285-298}, + Title = {Convergence analyses of {Galerkin} least-squares methods + for symmetric advective-diffusive forms of the {Stokes} and + incompressible {Navier-Stokes} equations}, + Volume = {105}, + Year = {1993} +} + +###Article{ franca-hughes-93, + Author = {Franca, L.P. and Hughes, T.J.R.}, + Journal = {Comp. Meth. Appl. Mech. Eng.}, + Pages = {285-298}, + Title = {Convergence analyses of {Galerkin} least-squares methods + for symmetric advective-diffusive forms of the {Stokes} and + incompressible {Navier-Stokes} equations}, + Volume = {105}, + Year = {1993} +} + +@Unpublished{ franchitti-02, + Author = {Franchitti, A.}, + Note = {Universit{\'e} Paris 6}, + Title = {Rapport de stage de {DEA} (in {French})} +} + +###Unpublished{ franchitti-02, + Author = {Franchitti, A.}, + Note = {Universit{\'e} Paris 6}, + Title = {Rapport de stage de {DEA} (in {French})} +} + +@Article{ franck2014arxiv, + Title = {Sparse Variational Bayesian Approximations for Nonlinear + Inverse Problems: applications in nonlinear elastography}, + Author = {Franck, I.M. and Koutsourelakis, P.S.}, + Journal = {arXiv preprint arXiv:1412.0473}, + Year = {2014} +} + +@Article{ frank-1899, + Author = "Frank, O.", + Title = "{Die Grundform des arteriellen Pulses}", + Journal = "{Zeitschrift f\"ur Biologie}", + Volume = 37, + Pages = "483Ð526", + Year = "1899" +} + +###Article{ frank-1899, + Author = "Frank, O.", + Title = "{Die Grundform des arteriellen Pulses}", + Journal = "{Zeitschrift f\"ur Biologie}", + Volume = 37, + Pages = "483Ð526", + Year = "1899" +} + +###Article{ frank-1899, + Author = "Frank, O.", + Title = "{Die Grundform des arteriellen Pulses}", + Journal = "{Zeitschrift f\"ur Biologie}", + Volume = 37, + Pages = "483Ð526", + Year = "1899" +} + +###Article{ frank-1899, + Author = "Frank, O.", + Title = "{Die Grundform des arteriellen Pulses}", + Journal = "{Zeitschrift f\"ur Biologie}", + Volume = 37, + Pages = "483Ð526", + Year = "1899" +} + +@Manual{ freefem, + Author = {Hecht, F. and Pironneau, O. and Le Hyaric, A. and Ohtsuka, + K.}, + Organization = {University of Paris 6}, + Title = {FreeFem++ v. 2.11. User's Manual} +} + +###Manual{ freefem, + Author = {Hecht, F. and Pironneau, O. and Le Hyaric, A. and Ohtsuka, + K.}, + Organization = {University of Paris 6}, + Title = {FreeFem++ v. 2.11. User's Manual} +} + +@InProceedings{ frey-00, + Author = {P.J. Frey}, + BookTitle = {Proc.of 9th Int. Meshing Roundtable, New Orleans, USA}, + Title = {About surface remeshing}, + Year = {2000} +} + +###InProceedings{ frey-00, + Author = {P.J. Frey}, + BookTitle = {Proc.of 9th Int. Meshing Roundtable, New Orleans, USA}, + Title = {About surface remeshing}, + Year = {2000} +} + +@Article{ frey-borouchaki-03, + Author = {P.J. Frey and H. Borouchaki}, + Journal = {Int. J. Numer. Methods Engng.}, + Number = {2}, + Pages = {227-245}, + Title = {Surface meshing using a geometric error estimate}, + Volume = {58}, + Year = {2003} +} + +###Article{ frey-borouchaki-03, + Author = {P.J. Frey and H. Borouchaki}, + Journal = {Int. J. Numer. Methods Engng.}, + Number = {2}, + Pages = {227-245}, + Title = {Surface meshing using a geometric error estimate}, + Volume = {58}, + Year = {2003} +} + +@Book{ frey-george-00, + Author = {Frey, P.J. and George,P.L.}, + Publisher = {Herm{\`e}s Science Publ., Paris, Oxford}, + Title = {Mesh generation. Application to finite elements}, + Year = {2000} +} + +###Book{ frey-george-00, + Author = {Frey, P.J. and George,P.L.}, + Publisher = {Herm{\`e}s Science Publ., Paris, Oxford}, + Title = {Mesh generation. Application to finite elements}, + Year = {2000} +} + +@Article{ frydrychowicz_interdependencies_2012, + Title = {Interdependencies of Aortic Arch Secondary Flow Patterns, + Geometry, and Age Analysed by 4-Dimensional Phase Contrast + Magnetic Resonance Imaging at 3 {{Tesla}}}, + Volume = {22}, + Number = {5}, + JournalTitle = {European radiology}, + Year = {2012}, + Pages = {1122--1130}, + Author = {Frydrychowicz, Alex and Berger, Alexander and Del Rio, + Alejandro Munoz and Russe, Maximilian F. and Bock, Jelena + and Harloff, Andreas and Markl, Michael} +} + +@Article{ fujita-kato-64, + Author = {Fujita, H. and Kato, T.}, + Journal = {Arch. Rat. Mech. Anal.}, + Pages = {269-315}, + Title = {On the {Navier-Stokes} initial value problem, {I}}, + Volume = {3}, + Year = {1964} +} + +###Article{ fujita-kato-64, + Author = {Fujita, H. and Kato, T.}, + Journal = {Arch. Rat. Mech. Anal.}, + Pages = {269-315}, + Title = {On the {Navier-Stokes} initial value problem, {I}}, + Volume = {3}, + Year = {1964} +} + +@Article{ funamoto-etal-08, + Title = {Numerical experiment for ultrasonic-measurement-integrated + simulation of three-dimensional unsteady blood flow}, + Author = {Funamoto, K. and Hayase, T. and Saijo, Y. and Yambe, T.}, + Journal = {Annals of biomedical engineering}, + Volume = {36}, + Number = {8}, + Pages = {1383--1397}, + Year = {2008}, + Publisher = {Springer} +} + + +@article{funamoto2009numerical, + title={Numerical experiment of transient and steady characteristics of ultrasonic-measurement-integrated simulation in three-dimensional blood flow analysis}, + author={Funamoto, Kenichi and Hayase, Toshiyuki and Saijo, Yoshifumi and Yambe, Tomoyuki}, + journal={Annals of biomedical engineering}, + volume={37}, + number={1}, + pages={34}, + year={2009}, + publisher={Springer} +} + + +###Article{ funamoto-etal-08, + Title = {Numerical experiment for ultrasonic-measurement-integrated + simulation of three-dimensional unsteady blood flow}, + Author = {Funamoto, K. and Hayase, T. and Saijo, Y. and Yambe, T.}, + Journal = {Annals of biomedical engineering}, + Volume = {36}, + Number = {8}, + Pages = {1383--1397}, + Year = {2008}, + Publisher = {Springer} +} + +@Article{ funamoto2009annals, + Title = {Numerical experiment for ultrasonic-measurement-integrated + simulation of three-dimensional unsteady blood flow}, + Author = {Funamoto, K. and Hayase, T. and Saijo, Y. and Yambe, T.}, + Journal = {Annals of biomedical engineering}, + Volume = {36}, + Number = {8}, + Pages = {1383–1397}, + Year = {2008}, + Publisher = {EDP Sciences} +} + +@Article{ funamoto_numerical_2008, + Title = {Numerical Experiment for Ultrasonic-Measurement-Integrated + Simulation of Three-Dimensional Unsteady Blood Flow}, + Volume = {36}, + Number = {8}, + JournalTitle = {Annals of biomedical engineering}, + Year = {2008}, + Pages = {1383}, + Author = {Funamoto, Kenichi and Hayase, Toshiyuki and Saijo, + Yoshifumi and Yambe, Tomoyuki} +} + +@Book{ fung-93, + Annote = {hemodynamics, arterial wall, blood flow, muscle, heart, + blood vessels, bone, cartilage, erythrocyte, leucocyte}, + Author = {Fung, Y. C.}, + code = {hemo}, + Publisher = {Springer}, + Title = {Biomechanics, Mechanical properties of living tissues}, + Year = {1993} +} + +###Book{ fung-93, + Annote = {hemodynamics, arterial wall, blood flow, muscle, heart, + blood vessels, bone, cartilage, erythrocyte, leucocyte}, + Author = {Fung, Y. C.}, + code = {hemo}, + Publisher = {Springer}, + Title = {Biomechanics, Mechanical properties of living tissues}, + Year = {1993} +} + +@Article{ fung-kronek-patitucci-79, + Author = {Fung, Y.C. and Fronek, K. and Patitucci, P.}, + Title = {Pseudoelasticity of arteries and the choice of its + mathematical expression}, + Journal = {American Journal of Physiology}, + Volume = {237}, + Year = {1979}, + Number = {5}, + Pages = {H620-31}, + pubmedid = {495769}, + ISSN = {0002-9513} +} + +###Article{ fung-kronek-patitucci-79, + Author = {Fung, Y.C. and Fronek, K. and Patitucci, P.}, + Title = {Pseudoelasticity of arteries and the choice of its + mathematical expression}, + Journal = {American Journal of Physiology}, + Volume = {237}, + Year = {1979}, + Number = {5}, + Pages = {H620-31}, + URL = {http://www.biomedsearch.com/nih/Pseudoelasticity-arteries-choice-its-mathematical/495769.html}, + pubmedid = {495769}, + ISSN = {0002-9513} +} + +@Article{ funke_variational_2016, + Title = {Variational Data Assimilation for Transient Blood Flow + Simulations}, + URL = {https://arxiv.org/abs/1607.03013}, + JournalTitle = {arXiv preprint arXiv:1607.03013}, + URLDate = {2016-11-21}, + Year = {2016}, + Author = {Funke, S. W. and Nordaas, M. and Evju, Øyvind and + Aln\textbackslash{}a es, M. S. and Mardal, K.-A.} +} + +@Article{ funke_variational_2019, + Title = {Variational data assimilation for transient blood flow + simulations: Cerebral aneurysms as an illustrative + example}, + Author = {Funke, Simon Wolfgang and Nordaas, Magne and Evju, + {\O}yvind and Aln{\ae}s, Martin Sandve and Mardal, Kent + Andre}, + Journal = {International journal for numerical methods in biomedical + engineering}, + Volume = {35}, + Number = {1}, + Pages = {e3152}, + Year = {2019}, + Publisher = {Wiley Online Library} +} + +@Article{ furioli-lemarie-rieusset-terraneo-97, + Author = {Furioli, G. and Lemari{\'e}-Rieusset, P.G. and Terraneo, + E.}, + Journal = {C. R. Acad. Sci.}, + Pages = {1253-1256}, + Title = {Sur l'unicit{\'e} dans {$L^3(R^3)$} des solutions mild des + {\'e}quations de {Navier-Stokes}}, + Volume = {325}, + Year = {1997} +} + +###Article{ furioli-lemarie-rieusset-terraneo-97, + Author = {Furioli, G. and Lemari{\'e}-Rieusset, P.G. and Terraneo, + E.}, + Journal = {C. R. Acad. Sci.}, + Pages = {1253-1256}, + Title = {Sur l'unicit{\'e} dans {$L^3(R^3)$} des solutions mild des + {\'e}quations de {Navier-Stokes}}, + Volume = {325}, + Year = {1997} +} + +@Article{ gaca-etal-08, + Author = "Gaca, A.M. and Jaggers, J.J. and Dudley, L.T. and Bisset, + G.S.", + Title = "{Repair of Congenital Heart Disease: A Primer--Part 2}", + Journal = "Radiology", + Volume = 248, + Pages = "44-60", + Number = "1", + Year = "2008" +} + +###Article{ gaca-etal-08, + Author = "Gaca, A.M. and Jaggers, J.J. and Dudley, L.T. and Bisset, + G.S.", + Title = "{Repair of Congenital Heart Disease: A Primer--Part 2}", + Journal = "Radiology", + Volume = 248, + Pages = "44-60", + Number = "1", + Year = "2008" +} + +@Article{ galdi-heywood-shibata-97, + Author = {Galdi, G.P. and Heywood, J.G. and Shibata, Y.}, + Journal = {Arch. Rat. Mech. Anal. }, + Pages = {307-318}, + Title = {On the global existence and convergence to steady state of + {Navier-Stokes} flow past an obstacle that is started from + rest}, + Volume = {138}, + Year = {1997} +} + +###Article{ galdi-heywood-shibata-97, + Author = {Galdi, G.P. and Heywood, J.G. and Shibata, Y.}, + Journal = {Arch. Rat. Mech. Anal. }, + Pages = {307-318}, + Title = {On the global existence and convergence to steady state of + {Navier-Stokes} flow past an obstacle that is started from + rest}, + Volume = {138}, + Year = {1997} +} + +@Article{ galdi-padula-solonnikov-96, + Author = {Galdi, G.P. and Padula, M. and Solonnikov, V.A.}, + Journal = {Indiana Univ. Math. J.}, + Number = {4}, + Pages = {961-994}, + Title = {Existence, uniqueness and asymptotic behaviour of + solutions of steady-state {Navier-Stokes} equations in a + plane Aperture Domain}, + Volume = {45}, + Year = {1996} +} + +###Article{ galdi-padula-solonnikov-96, + Author = {Galdi, G.P. and Padula, M. and Solonnikov, V.A.}, + Journal = {Indiana Univ. Math. J.}, + Number = {4}, + Pages = {961-994}, + Title = {Existence, uniqueness and asymptotic behaviour of + solutions of steady-state {Navier-Stokes} equations in a + plane Aperture Domain}, + Volume = {45}, + Year = {1996} +} + +@Article{ gallo_use_2012, + Title = {On the Use of in Vivo Measured Flow Rates as Boundary + Conditions for Image-Based Hemodynamic Models of the Human + Aorta: Implications for Indicators of Abnormal Flow}, + Volume = {40}, + ShortTitle = {On the Use of in Vivo Measured Flow Rates as Boundary + Conditions for Image-Based Hemodynamic Models of the Human + Aorta}, + Number = {3}, + JournalTitle = {Annals of biomedical engineering}, + Year = {2012}, + Pages = {729--741}, + Author = {Gallo, Diego and De Santis, Gianluca and Negri, Federica + and Tresoldi, D. and Ponzini, Raffaele and Massai, Diana + and Deriu, M. A. and Segers, Patrick and Verhegghe, + Benedict and Rizzo, G.} +} + +@Article{ gambaruto_reconstruction_2008, + Title = {Reconstruction of Shape and Its Effect on Flow in Arterial + Conduits}, + Volume = {57}, + Number = {5}, + JournalTitle = {International Journal for Numerical Methods in Fluids}, + Year = {2008}, + Pages = {495--517}, + Author = {Gambaruto, A. M. and Peir{\'o}, J. and Doorly, Denis J. + and Radaelli, A. G.} +} + +@Article{ gambaruto_sensitivity_2011, + langid = {english}, + Title = {Sensitivity of Hemodynamics in a Patient Specific Cerebral + Aneurysm to Vascular Geometry and Blood Rheology.}, + Volume = {8}, + ISSN = {1547-1063}, + URL = {http://europepmc.org/abstract/med/21631137}, + DOI = {10.3934/mbe.2011.8.409}, + Abstract = {Abstract: Newtonian and generalized Newtonian mathematical + models for blood flow are compared in two different + reconstructions of an anatomically realistic...}, + Number = {2}, + JournalTitle = {Mathematical biosciences and engineering : MBE}, + ShortJournal = {Math Biosci Eng}, + URLDate = {2019-02-28}, + Year = {2011-04}, + Pages = {409-423}, + Author = {Gambaruto, A. M. and Janela, J. and Moura, A. and + Sequeira, A.}, + EPrintType = {pmid}, + EPrint = {21631137} +} + +@Article{ gamerman1997markov, + Title = {Markov Chain Monte Carlo: Statistical Simulation for + Bayesian Inference}, + Author = {Gamerman, D}, + Journal = {Chapman and}, + Volume = {1669}, + Year = {1997} +} + +@Article{ gamper-boesiger-kozerke-07, + Author = {Gamper, U. and Boesiger, P. and Kozerke, S.}, + Title = {Diffusion imaging of the in vivo heart using spin echoes + -- considerations on bulk motion sensitivity}, + Journal = {Magnetic Resonance in Medicine}, + Volume = {57}, + Number = {2}, + Publisher = {Wiley Subscription Services, Inc., A Wiley Company}, + ISSN = {1522-2594}, + Pages = {331--337}, + Keywords = {diffusion imaging, heart, spin echo, myocardial structure, + motion sensitivity}, + Year = {2007} +} + +@Article{ garcia-1998, + Author = {Bonow, R.O. and Carabello, B.A. and de~Leon, A.C. and + Edmunds, L.H. and Fredderly, B.J. and Freed, M.D. and + Gaasch, W.H. and McKay, C.R.and Nishimura, R.A. and O'Gara, + P.T. and O'Rourke, R.A. and Rahimtoola, S.H.}, + Journal = {Circulation}, + Pages = {1949--1984}, + Title = {Guidelines for the management of patients with valvular + heart disease: executive summary, a report of the American + College of Cardiology}, + Volume = {98}, + Year = {1998} +} + +###Article{ garcia-1998, + Author = {Bonow, R.O. and Carabello, B.A. and de~Leon, A.C. and + Edmunds, L.H. and Fredderly, B.J. and Freed, M.D. and + Gaasch, W.H. and McKay, C.R.and Nishimura, R.A. and O'Gara, + P.T. and O'Rourke, R.A. and Rahimtoola, S.H.}, + Journal = {Circulation}, + Pages = {1949--1984}, + Title = {Guidelines for the management of patients with valvular + heart disease: executive summary, a report of the American + College of Cardiology}, + Volume = {98}, + Year = {1998} +} + +@Article{ garcia-2003, + Author = {Garcia, D. and Dumesnil, J. and Durand, L.-G. and Kadem, + L. and Pibarot, P.}, + Journal = {Jour. American College of Cardiology}, + Number = {3}, + Pages = {435--445}, + Title = {Discrepancies between catheter and Doppler estimates of + valve effective orifice area can be predicted from the + pressure recovery phenomenon}, + Volume = {41}, + Year = {2003} +} + +###Article{ garcia-2003, + Author = {Garcia, D. and Dumesnil, J. and Durand, L.-G. and Kadem, + L. and Pibarot, P.}, + Journal = {Jour. American College of Cardiology}, + Number = {3}, + Pages = {435--445}, + Title = {Discrepancies between catheter and Doppler estimates of + valve effective orifice area can be predicted from the + pressure recovery phenomenon}, + Volume = {41}, + Year = {2003} +} + +@Article{ garcia_discrepancies_2003, + Title = {Discrepancies between Catheter and {{Doppler}} Estimates + of Valve Effective Orifice Area Can Be Predicted from the + Pressure Recovery Phenomenon: Practical Implications with + Regard to Quantification of Aortic Stenosis Severity}, + Volume = {41}, + ShortTitle = {Discrepancies between Catheter and {{Doppler}} Estimates + of Valve Effective Orifice Area Can Be Predicted from the + Pressure Recovery Phenomenon}, + Number = {3}, + JournalTitle = {Journal of the American College of Cardiology}, + Year = {2003}, + Pages = {435--442}, + Author = {Garcia, Damien and Dumesnil, Jean G. and Durand, + Louis-Gilles and Kadem, Lyes and Pibarot, Philippe} +} + +@Article{ garrido1994, + Title = {Anisotropy of water diffusion in the myocardium of the + rat.}, + Author = {Garrido, L. and Wedeen, V. J. and Kwong, K. K. and + Spencer, U. M. and Kantor, H. L.}, + Journal = {Circulation research}, + Volume = {74}, + Number = {5}, + Pages = {789--793}, + Year = {1994}, + Publisher = {Am Heart Assoc} +} + +@Article{ gaudron1993circ, + Title = {Progressive left ventricular dysfunction and remodeling + after myocardial infarction. Potential mechanisms and early + predictors.}, + Author = {Gaudron, P and Eilles, C and Kugler, I and Ertl, G}, + Journal = {Circulation}, + Year = {1993}, + Number = {3}, + Pages = {755-63}, + Volume = {87}, + Abstract = {BACKGROUND Left ventricular enlargement and the + development of chronic heart failure are potent predictors + of survival in patients after myocardial infarction. + Prospective studies relating progressive ventricular + enlargement in individual patients to global and regional + cardiac dysfunction and the onset of late chronic heart + failure are not available. It was the aim of this study to + define the relation between left ventricular dilatation and + global and regional cardiac dysfunction and to identify + early predictors of enlargement and chronic heart failure + in patients after myocardial infarction.METHODS AND RESULTS + Left ventricular volumes, regional area shrinkage fraction + in 18 predefined sectors (gated single photon emission + computed tomography), global ejection fraction, and + hemodynamics at rest and during exercise (supine bicycle, + 50 W, 4 minutes, Swan-Ganz catheter) were assessed + prospectively 4 days, 4 weeks, 6 months, and 1.5 and 3 + years after first myocardial infarction. Seventy patients + were assigned to groups with progressive, limited, or no + dilatation. Patients without dilatation (n = 38) maintained + normal volumes and hemodynamics until 3 years. With limited + dilatation (n = 18), left ventricular volume increased up + to 4 weeks after infarction and stabilized thereafter; + depressed stroke volume was restored 4 weeks after + infarction and then remained stable at rest. Wedge pressure + during exercise, however, progressively increased. With + progressive dilatation (n = 14), depressed cardiac and + stroke indexes were also restored by 4 weeks but + progressively deteriorated thereafter. Area shrinkage + fraction as an estimate of regional left ventricular + function in normokinetic sectors at 4 days gradually + deteriorated during 3 years, but hypokinetic and dyskinetic + sectors remained unchanged. Global ejection fraction fell + after 1.5 years, whereas right atrial pressure, wedge + pressure, and systemic vascular resistance increased. By + multivariate analysis, ejection fraction and stroke index + at 4 days, ventriculographic infarct size, infarct + location, and Thrombolysis in Myocardial Infarction trial + grade of infarct artery perfusion were significant + predictors of progressive ventricular enlargement and + chronic dysfunction.CONCLUSIONS Almost 26% of patients may + develop limited left ventricular dilatation within 4 weeks + after first infarction, which helps to restore cardiac + index and stroke index at rest and to preserve exercise + performance and therefore remains compensatory. A somewhat + smaller group (20%) develops progressive structural left + ventricular dilatation, which is compensatory at first, + then progresses to noncompensatory dilatation, and finally + results in severe global left ventricular dysfunction. In + these patients, depression of global ejection fraction + probably results from impairment of function of initially + normally contracting myocardium. Early predictors from + multivariate analysis allow identification of patients at + high risk for progressive left ventricular dilatation and + chronic ventricular dysfunction within 4 weeks after acute + infarction.}, + DOI = {10.1161/01.CIR.87.3.755}, + EPrint = {http://circ.ahajournals.org/content/87/3/755.full.pdf+html}, + File = {gaudron93.pdf:gaudron93.pdf:PDF}, + timestamp = {2015/09/13}, + URL = {http://circ.ahajournals.org/content/87/3/755.abstract} +} + +@Report{ gbd_2015_mortality_and_causes_of_death_collaborators_global_2016, + langid = {english}, + Title = {Global, Regional, and National Life Expectancy, All-Cause + Mortality, and Cause-Specific Mortality for 249 Causes of + Death, 1980-2015: A Systematic Analysis for the {{Global + Burden}} of {{Disease Study}} 2015}, + ShortTitle = {Global, Regional, and National Life Expectancy, All-Cause + Mortality, and Cause-Specific Mortality for 249 Causes of + Death, 1980-2015}, + Abstract = {BACKGROUND: Improving survival and extending the longevity + of life for all populations requires timely, robust + evidence on local mortality levels and trends. The Global + Burden of Disease 2015 Study (GBD 2015) provides a + comprehensive assessment of all-cause and cause-specific + mortality for 249 causes in 195 countries and territories + from 1980 to 2015. These results informed an in-depth + investigation of observed and expected mortality patterns + based on sociodemographic measures. METHODS: We estimated + all-cause mortality by age, sex, geography, and year using + an improved analytical approach originally developed for + GBD 2013 and GBD 2010. Improvements included refinements to + the estimation of child and adult mortality and + corresponding uncertainty, parameter selection for under-5 + mortality synthesis by spatiotemporal Gaussian process + regression, and sibling history data processing. We also + expanded the database of vital registration, survey, and + census data to 14\hphantom{,}294 geography-year datapoints. + For GBD 2015, eight causes, including Ebola virus disease, + were added to the previous GBD cause list for mortality. We + used six modelling approaches to assess cause-specific + mortality, with the Cause of Death Ensemble Model (CODEm) + generating estimates for most causes. We used a series of + novel analyses to systematically quantify the drivers of + trends in mortality across geographies. First, we assessed + observed and expected levels and trends of cause-specific + mortality as they relate to the Socio-demographic Index + (SDI), a summary indicator derived from measures of income + per capita, educational attainment, and fertility. Second, + we examined factors affecting total mortality patterns + through a series of counterfactual scenarios, testing the + magnitude by which population growth, population age + structures, and epidemiological changes contributed to + shifts in mortality. Finally, we attributed changes in life + expectancy to changes in cause of death. We documented each + step of the GBD 2015 estimation processes, as well as data + sources, in accordance with Guidelines for Accurate and + Transparent Health Estimates Reporting (GATHER). FINDINGS: + Globally, life expectancy from birth increased from 61·7 + years (95\% uncertainty interval 61·4-61·9) in 1980 to + 71·8 years (71·5-72·2) in 2015. Several countries in + sub-Saharan Africa had very large gains in life expectancy + from 2005 to 2015, rebounding from an era of exceedingly + high loss of life due to HIV/AIDS. At the same time, many + geographies saw life expectancy stagnate or decline, + particularly for men and in countries with rising mortality + from war or interpersonal violence. From 2005 to 2015, male + life expectancy in Syria dropped by 11·3 years + (3·7-17·4), to 62·6 years (56·5-70·2). Total deaths + increased by 4·1\% (2·6-5·6) from 2005 to 2015, rising + to 55·8 million (54·9 million to 56·6 million) in 2015, + but age-standardised death rates fell by 17·0\% + (15·8-18·1) during this time, underscoring changes in + population growth and shifts in global age structures. The + result was similar for non-communicable diseases (NCDs), + with total deaths from these causes increasing by 14·1\% + (12·6-16·0) to 39·8 million (39·2 million to 40·5 + million) in 2015, whereas age-standardised rates decreased + by 13·1\% (11·9-14·3). Globally, this mortality pattern + emerged for several NCDs, including several types of + cancer, ischaemic heart disease, cirrhosis, and Alzheimer's + disease and other dementias. By contrast, both total deaths + and age-standardised death rates due to communicable, + maternal, neonatal, and nutritional conditions + significantly declined from 2005 to 2015, gains largely + attributable to decreases in mortality rates due to + HIV/AIDS (42·1\%, 39·1-44·6), malaria (43·1\%, + 34·7-51·8), neonatal preterm birth complications + (29·8\%, 24·8-34·9), and maternal disorders (29·1\%, + 19·3-37·1). Progress was slower for several causes, such + as lower respiratory infections and nutritional + deficiencies, whereas deaths increased for others, + including dengue and drug use disorders. Age-standardised + death rates due to injuries significantly declined from + 2005 to 2015, yet interpersonal violence and war claimed + increasingly more lives in some regions, particularly in + the Middle East. In 2015, rotaviral enteritis (rotavirus) + was the leading cause of under-5 deaths due to diarrhoea + (146\hphantom{,}000 deaths, + 118\hphantom{,}000-183\hphantom{,}000) and pneumococcal + pneumonia was the leading cause of under-5 deaths due to + lower respiratory infections (393\hphantom{,}000 deaths, + 228\hphantom{,}000-532\hphantom{,}000), although + pathogen-specific mortality varied by region. Globally, the + effects of population growth, ageing, and changes in + age-standardised death rates substantially differed by + cause. Our analyses on the expected associations between + cause-specific mortality and SDI show the regular shifts in + cause of death composition and population age structure + with rising SDI. Country patterns of premature mortality + (measured as years of life lost [YLLs]) and how they differ + from the level expected on the basis of SDI alone revealed + distinct but highly heterogeneous patterns by region and + country or territory. Ischaemic heart disease, stroke, and + diabetes were among the leading causes of YLLs in most + regions, but in many cases, intraregional results sharply + diverged for ratios of observed and expected YLLs based on + SDI. Communicable, maternal, neonatal, and nutritional + diseases caused the most YLLs throughout sub-Saharan + Africa, with observed YLLs far exceeding expected YLLs for + countries in which malaria or HIV/AIDS remained the leading + causes of early death. INTERPRETATION: At the global scale, + age-specific mortality has steadily improved over the past + 35 years; this pattern of general progress continued in the + past decade. Progress has been faster in most countries + than expected on the basis of development measured by the + SDI. Against this background of progress, some countries + have seen falls in life expectancy, and age-standardised + death rates for some causes are increasing. Despite + progress in reducing age-standardised death rates, + population growth and ageing mean that the number of deaths + from most non-communicable causes are increasing in most + countries, putting increased demands on health systems. + FUNDING: Bill \& Melinda Gates Foundation.}, + Year = {2016-10-08}, + Pages = {1459-1544}, + Author = {{GBD 2015 Mortality and Causes of Death Collaborators}}, + EPrintType = {pmid}, + EPrint = {27733281}, + pmcid = {PMC5388903} +} + +@Article{ gee-foerster-wall-10, + Author = {Gee, M. W. and F\"orster, Ch. and Wall, W. A.}, + Title = {A computational strategy for prestressing patient-specific + biomechanical problems under finite deformation}, + Journal = {International Journal for Numerical Methods in Biomedical + Engineering}, + Volume = {26}, + Number = {1}, + Publisher = {John Wiley & Sons, Ltd.}, + ISSN = {2040-7947}, + DOI = {10.1002/cnm.1236}, + Pages = {52--72}, + Keywords = {inverse design analysis, prestressing, prestraining, + patient-specific modeling, biomechanics, abdominal aortic + aneurysm}, + Year = {2010} +} + +###Article{ gee-foerster-wall-10, + Author = {Gee, M. W. and F\"orster, Ch. and Wall, W. A.}, + Title = {A computational strategy for prestressing patient-specific + biomechanical problems under finite deformation}, + Journal = {International Journal for Numerical Methods in Biomedical + Engineering}, + Volume = {26}, + Number = {1}, + Publisher = {John Wiley & Sons, Ltd.}, + ISSN = {2040-7947}, + URL = {http://dx.doi.org/10.1002/cnm.1236}, + DOI = {10.1002/cnm.1236}, + Pages = {52--72}, + Keywords = {inverse design analysis, prestressing, prestraining, + patient-specific modeling, biomechanics, abdominal aortic + aneurysm}, + Year = {2010} +} + +@Article{ gee2010ijnmbe, + Title = {A computational strategy for prestressing patient-specific + biomechanical problems under finite deformation}, + Author = {Gee, MW and F{\"o}rster, Ch and Wall, WA}, + Journal = {International Journal for Numerical Methods in Biomedical + Engineering}, + Volume = {26}, + Number = {1}, + Pages = {52--72}, + Year = {2010}, + Publisher = {Wiley Online Library} +} + +@Article{ geerts2002ajp, + Title = {Characterization of the normal cardiac myofiber field in + goat measured with MR-diffusion tensor imaging}, + Author = {Geerts, L. and Bovendeerd, P. and Nicolay, K. and Arts, + T.}, + Journal = {American Journal of Physiology - Heart and Circulatory + Physiology}, + Year = {2002}, + Number = {1}, + Pages = {H139--H145}, + Volume = {283}, + Abstract = {Cardiac myofiber orientation is a crucial determinant of + the distribution of myocardial wall stress. Myofiber + orientation is commonly quantified by helix and transverse + angles. Accuracy of reported helix angles is limited. + Reported transverse angle data are incomplete. We measured + cardiac myofiber orientation postmortem in five healthy + goat hearts using magnetic resonance-diffusion tensor + imaging. A novel local wall-bound coordinate system was + derived from the characteristics of the fiber field. The + transmural course of the helix angle corresponded to data + reported in literature. The mean midwall transverse angle + ranged from -12 {\textpm} 4{\textdegree} near the apex to + +9.0 {\textpm} 4{\textdegree} near the base of the left + ventricle, which is in agreement with the course predicted + by Rijcken et al. (18) using a uniform load hypothesis. The + divergence of the myofiber field was computed, which is a + measure for the extent to which wall stress is transmitted + through the myofiber alone. It appeared to be \<0.07 + mm-1 throughout the myocardial walls except for the fusion + sites between the left and right ventricles and the + insertion sites of the papillary muscles.}, + DOI = {10.1152/ajpheart.00968.2001}, + File = {geerts02.pdf:geerts02.pdf:PDF}, + Publisher = {American Physiological Society}, + timestamp = {2015/09/22} +} + +@Article{ geerts2002characterization, + Author = {Geerts, Liesbeth and Bovendeerd, Peter and Nicolay, Klaas + and Arts, Theo}, + Title = {Characterization of the normal cardiac myofiber field in + goat measured with MR-diffusion tensor imaging}, + Journal = {American Journal of Physiology-Heart and Circulatory + Physiology}, + Year = {2002}, + Volume = {52}, + Pages = {H139}, + Number = {1}, + Publisher = {[Bethesda, Md.] American Physiological Society.} +} + +@Article{ genet2015abe, + Title = {Modeling Pathologies of Diastolic and Systolic Heart + Failure}, + Author = {Genet, M. and Lee, L.C. and Baillargeon, B. and Guccione, + J.M. and Kuhl, E.}, + Journal = {Annals of Biomedical Engineering}, + Year = {2015}, + Pages = {1-16}, + DOI = {10.1007/s10439-015-1351-2}, + File = {genet15.pdf:genet15.pdf:PDF}, + ISSN = {0090-6964}, + Keywords = {Cardiac modeling; Hypertrophy; Growth; Hypertension; + Finite element method}, + Language = {English}, + Publisher = {Springer US}, + timestamp = {2015/09/21}, + URL = {http://dx.doi.org/10.1007/s10439-015-1351-2} +} + +@InCollection{ george-04, + Address = {John Wiley \& Sons}, + Author = {George, P.L. and Borouchaki, H. and Frey, P.J. and Laug, + P. and Saltel,E.}, + BookTitle = {Encyclopedia of computational mechanics}, + Editor = {Stein, E. and de Borst, R. and Hughes, T.J.R.}, + Publisher = {Higher Education Press}, + Title = {Mesh generation and mesh adaptivity~: theory, techniques}, + Year = {2004} +} + +###InCollection{ george-04, + Address = {John Wiley \& Sons}, + Author = {George, P.L. and Borouchaki, H. and Frey, P.J. and Laug, + P. and Saltel,E.}, + BookTitle = {Encyclopedia of computational mechanics}, + Editor = {Stein, E. and de Borst, R. and Hughes, T.J.R.}, + Publisher = {Higher Education Press}, + Title = {Mesh generation and mesh adaptivity~: theory, techniques}, + Year = {2004} +} + +@Article{ georgescu-79, + Author = {Georgescu, V.}, + Journal = {Annali di Matematica Pura ed. Applicata}, + Month = {April}, + Number = {122}, + Pages = {159-198}, + Title = {Some boundary value problems for differential forms on + compact {Riemannian} manifolds}, + Volume = {4}, + Year = {1979} +} + +###Article{ georgescu-79, + Author = {Georgescu, V.}, + Journal = {Annali di Matematica Pura ed. Applicata}, + Month = {April}, + Number = {122}, + Pages = {159-198}, + Title = {Some boundary value problems for differential forms on + compact {Riemannian} manifolds}, + Volume = {4}, + Year = {1979} +} + +@Article{ gerbeau-00, + Author = {Gerbeau, J-F.}, + Journal = {Numerische Mathematik}, + Number = {1}, + Pages = {83-111}, + Title = {A stabilized finite element method for the incompressible + magnetohydrodynamic equations}, + Volume = {87}, + Year = {2000} +} + +###Article{ gerbeau-00, + Author = {Gerbeau, J-F.}, + Journal = {Numerische Mathematik}, + Number = {1}, + Pages = {83-111}, + Title = {A stabilized finite element method for the incompressible + magnetohydrodynamic equations}, + Volume = {87}, + Year = {2000} +} + +@InProceedings{ gerbeau-01, + Author = {Gerbeau, J-F.}, + BookTitle = {Proceedings of the First M.I.T. Conference on + Computational Fluid and Solid Mechanics}, + Pages = {1184-1187}, + Publisher = {Elsevier}, + Title = {Numerical simulations in magnetohydrodynamics with free + surfaces}, + Volume = 2, + Year = 2001 +} + +###InProceedings{ gerbeau-01, + Author = {Gerbeau, J-F.}, + BookTitle = {Proceedings of the First M.I.T. Conference on + Computational Fluid and Solid Mechanics}, + Pages = {1184-1187}, + Publisher = {Elsevier}, + Title = {Numerical simulations in magnetohydrodynamics with free + surfaces}, + Volume = 2, + Year = 2001 +} + +@InProceedings{ gerbeau-03, + Author = {Gerbeau, J-F.}, + BookTitle = {Proceedings of the second M.I.T. Conference on + Computational Fluid and Solid Mechanics}, + Editor = {K.J. Bathe}, + Pages = {1355-1357}, + Publisher = {Elsevier}, + Title = {A quasi-{Newton} method for a fluid-structure problem + arising in blood flows}, + Year = {2003} +} + +###InProceedings{ gerbeau-03, + Author = {Gerbeau, J-F.}, + BookTitle = {Proceedings of the second M.I.T. Conference on + Computational Fluid and Solid Mechanics}, + Editor = {K.J. Bathe}, + Pages = {1355-1357}, + Publisher = {Elsevier}, + Title = {A quasi-{Newton} method for a fluid-structure problem + arising in blood flows}, + Year = {2003} +} + +@PhdThesis{ gerbeau-98, + Author = {Gerbeau, J-F.}, + School = {Ecole Nationale des Ponts et Chauss{\'e}es}, + Title = {Probl{\`e}mes math{\'e}\-matiques et num{\'e}\-riques + pos{\'e}s par la mod{\'e}li\-sation de l'{\'e}lec\-trolyse + de l'aluminium}, + Type = {Th{\`e}se}, + Year = {1998} +} + +###PhdThesis{ gerbeau-98, + Author = {Gerbeau, J-F.}, + School = {Ecole Nationale des Ponts et Chauss{\'e}es}, + Title = {Probl{\`e}mes math{\'e}\-matiques et num{\'e}\-riques + pos{\'e}s par la mod{\'e}li\-sation de l'{\'e}lec\-trolyse + de l'aluminium}, + Type = {Th{\`e}se}, + Year = {1998} +} + +@InProceedings{ gerbeau-98b, + Author = {Gerbeau, J-F.}, + BookTitle = {Proceedings of the Fourth European Computational Fluid + Dynamics, ECCOMAS 98}, + Pages = {821--825}, + Publisher = {Wiley}, + Title = {Comparison of numerical methods for solving a + magnetostatic problem. Application to the + magnetohydrodynamic equations}, + Year = {1998} +} + +###InProceedings{ gerbeau-98b, + Author = {Gerbeau, J-F.}, + BookTitle = {Proceedings of the Fourth European Computational Fluid + Dynamics, ECCOMAS 98}, + Pages = {821--825}, + Publisher = {Wiley}, + Title = {Comparison of numerical methods for solving a + magnetostatic problem. Application to the + magnetohydrodynamic equations}, + Year = {1998} +} + +@Unpublished{ gerbeau-glinsky-larrouturou-97, + Author = {Gerbeau, J-F. and Glinsky-Olivier, N. and Larrouturou, + B.}, + Note = {Rapport de recherche INRIA No.3132, 1997 }, + Title = {Semi-implicit Roe-type fluxes for low-Mach number flows} +} + +###Unpublished{ gerbeau-glinsky-larrouturou-97, + Author = {Gerbeau, J-F. and Glinsky-Olivier, N. and Larrouturou, + B.}, + Note = {Rapport de recherche INRIA No.3132, 1997 }, + Title = {Semi-implicit Roe-type fluxes for low-Mach number flows} +} + +@Article{ gerbeau-le-bris-00, + Author = {Gerbeau, J-F. and Le Bris, C.}, + Journal = {Calcolo}, + Number = {1}, + Pages = {1-20}, + Title = {Comparison between two numerical methods for a + magnetostatic problem}, + Volume = {37}, + Year = {2000} +} + +###Article{ gerbeau-le-bris-00, + Author = {Gerbeau, J-F. and Le Bris, C.}, + Journal = {Calcolo}, + Number = {1}, + Pages = {1-20}, + Title = {Comparison between two numerical methods for a + magnetostatic problem}, + Volume = {37}, + Year = {2000} +} + +@Article{ gerbeau-le-bris-00b, + Author = {Gerbeau, J-F. and Le Bris, C.}, + Journal = {Appl. Math. Lett.}, + Number = {3}, + Pages = {107-112}, + Title = {A basic remark on some {Navier-Stokes} equations with body + forces}, + Volume = {13}, + Year = {2000} +} + +###Article{ gerbeau-le-bris-00b, + Author = {Gerbeau, J-F. and Le Bris, C.}, + Journal = {Appl. Math. Lett.}, + Number = {3}, + Pages = {107-112}, + Title = {A basic remark on some {Navier-Stokes} equations with body + forces}, + Volume = {13}, + Year = {2000} +} + +@InBook{ gerbeau-le-bris-00c, + Author = {Gerbeau, J-F. and Le Bris, C.}, + BookTitle = {Evolution Equations and Their Applications in Physical and + Life Sciences}, + Pages = {355-367}, + Publisher = {Marcel Dekker Inc.}, + Series = {Lecture Notes in Pure and Applied Mathematics}, + Title = {Mathematical study of a coupled system arising in + Magnetohydrodynamics}, + Volume = {215}, + Year = {2000} +} + +###InBook{ gerbeau-le-bris-00c, + Author = {Gerbeau, J-F. and Le Bris, C.}, + BookTitle = {Evolution Equations and Their Applications in Physical and + Life Sciences}, + Pages = {355-367}, + Publisher = {Marcel Dekker Inc.}, + Series = {Lecture Notes in Pure and Applied Mathematics}, + Title = {Mathematical study of a coupled system arising in + Magnetohydrodynamics}, + Volume = {215}, + Year = {2000} +} + +@Article{ gerbeau-le-bris-97, + Author = {Gerbeau, J-F. and Le Bris, C.}, + Journal = {Advances in Differential Equations}, + Month = {May}, + Number = {3}, + Pages = {427-452}, + Title = {Existence of solution for a density-dependent + magnetohydrodynamic equation}, + Volume = {2}, + Year = {1997} +} + +###Article{ gerbeau-le-bris-97, + Author = {Gerbeau, J-F. and Le Bris, C.}, + Journal = {Advances in Differential Equations}, + Month = {May}, + Number = {3}, + Pages = {427-452}, + Title = {Existence of solution for a density-dependent + magnetohydrodynamic equation}, + Volume = {2}, + Year = {1997} +} + +@Article{ gerbeau-le-bris-99, + Author = {Gerbeau, J-F. and Le Bris, C.}, + Journal = {Appl. Math. Lett.}, + Pages = {53-57}, + Title = {On a coupled system arising in Magnetohydrodynamics}, + Volume = {12}, + Year = {1999} +} + +###Article{ gerbeau-le-bris-99, + Author = {Gerbeau, J-F. and Le Bris, C.}, + Journal = {Appl. Math. Lett.}, + Pages = {53-57}, + Title = {On a coupled system arising in Magnetohydrodynamics}, + Volume = {12}, + Year = {1999} +} + +@Article{ gerbeau-le-bris-99b, + Author = {Gerbeau, J-F. and Le Bris, C.}, + Journal = {Differential Integral Equations}, + Number = {5}, + Pages = {691-740}, + Title = {On the long time behaviour of the solution to the + two-fluids incompressible Navier-Stokes equations}, + Volume = {12}, + Year = {1999} +} + +###Article{ gerbeau-le-bris-99b, + Author = {Gerbeau, J-F. and Le Bris, C.}, + Journal = {Differential Integral Equations}, + Number = {5}, + Pages = {691-740}, + Title = {On the long time behaviour of the solution to the + two-fluids incompressible Navier-Stokes equations}, + Volume = {12}, + Year = {1999} +} + +@Article{ gerbeau-le-bris-bercovier-97, + Author = {Gerbeau, J-F. and Le Bris, C. and Bercovier, M.}, + Journal = {Int. Jour. Num. Meth. Fluids}, + Month = {October}, + Pages = {679-695}, + Title = {Spurious velocities in the steady flow of an + incompressible fluid subjected to external forces}, + Volume = {25}, + Year = {1997} +} + +###Article{ gerbeau-le-bris-bercovier-97, + Author = {Gerbeau, J-F. and Le Bris, C. and Bercovier, M.}, + Journal = {Int. Jour. Num. Meth. Fluids}, + Month = {October}, + Pages = {679-695}, + Title = {Spurious velocities in the steady flow of an + incompressible fluid subjected to external forces}, + Volume = {25}, + Year = {1997} +} + +@Article{ gerbeau-le-bris-lelievre-04, + Author = {Gerbeau, J-F. and Leli{\`e}vre, T. and Le Bris, C.}, + Journal = {Computers and Fluids}, + Pages = {801-814}, + Title = {Modeling and simulation of the industrial production of + aluminium: the nonlinear approach}, + Volume = {33}, + Year = {2004} +} + +###Article{ gerbeau-le-bris-lelievre-04, + Author = {Gerbeau, J-F. and Leli{\`e}vre, T. and Le Bris, C.}, + Journal = {Computers and Fluids}, + Pages = {801-814}, + Title = {Modeling and simulation of the industrial production of + aluminium: the nonlinear approach}, + Volume = {33}, + Year = {2004} +} + +@Unpublished{ gerbeau-lelievre, + Author = {Gerbeau, J-F. and Leli{\`e}vre, T.}, + Note = {(en pr{\'e}paration)}, + Title = {Stabilized finite elements on moving domains} +} + +###Unpublished{ gerbeau-lelievre, + Author = {Gerbeau, J-F. and Leli{\`e}vre, T.}, + Note = {(en pr{\'e}paration)}, + Title = {Stabilized finite elements on moving domains} +} + +@Article{ gerbeau-lelievre-le-bris-02, + Author = {Gerbeau, J-F. and Leli{\`e}vre, T. and Le Bris, C. and + Ligonesche, N.}, + Journal = {Light Metal}, + Pages = {p. 483-487}, + Title = {Metal pad roll instabilities}, + Year = {2002} +} + +###Article{ gerbeau-lelievre-le-bris-02, + Author = {Gerbeau, J-F. and Leli{\`e}vre, T. and Le Bris, C. and + Ligonesche, N.}, + Journal = {Light Metal}, + Pages = {p. 483-487}, + Title = {Metal pad roll instabilities}, + Year = {2002} +} + +@Article{ gerbeau-lelievre-le-bris-02b, + Author = {Gerbeau, J-F. and Leli{\`e}vre, T. and Le Bris, C.}, + Journal = {Fundamental and Applied MHD. Proceedings of the Fifth + international Pamir Conference.}, + Pages = {101-105}, + Title = {Numerical simulations of two-fluids MHD flows}, + Volume = {1}, + Year = {2002} +} + +###Article{ gerbeau-lelievre-le-bris-02b, + Author = {Gerbeau, J-F. and Leli{\`e}vre, T. and Le Bris, C.}, + Journal = {Fundamental and Applied MHD. Proceedings of the Fifth + international Pamir Conference.}, + Pages = {101-105}, + Title = {Numerical simulations of two-fluids MHD flows}, + Volume = {1}, + Year = {2002} +} + +@Article{ gerbeau-lelievre-le-bris-03, + Author = {Gerbeau, J-F. and Leli{\`e}vre, T. and Le Bris, C.}, + Journal = {Jour. Comp. Phys.}, + Number = 1, + Pages = {163-191}, + Title = {Simulations of {MHD} flows with moving interfaces}, + Volume = 184, + Year = 2003 +} + +###Article{ gerbeau-lelievre-le-bris-03, + Author = {Gerbeau, J-F. and Leli{\`e}vre, T. and Le Bris, C.}, + Journal = {Jour. Comp. Phys.}, + Number = 1, + Pages = {163-191}, + Title = {Simulations of {MHD} flows with moving interfaces}, + Volume = 184, + Year = 2003 +} + +@Article{ gerbeau-perthame-01, + Author = {Gerbeau, J-F. and Perthame, B.}, + Journal = {Discrete and Continuous Dynamical Systems: Series B}, + Number = {1}, + Pages = {89-102}, + Title = {Derivation of viscous Saint-Venant system for laminar + shallow water; numerical validation}, + Volume = {1}, + Year = {2001} +} + +###Article{ gerbeau-perthame-01, + Author = {Gerbeau, J-F. and Perthame, B.}, + Journal = {Discrete and Continuous Dynamical Systems: Series B}, + Number = {1}, + Pages = {89-102}, + Title = {Derivation of viscous Saint-Venant system for laminar + shallow water; numerical validation}, + Volume = {1}, + Year = {2001} +} + +@Article{ gerbeau-vidrascu-03, + Author = {Gerbeau, J-F. and Vidrascu, M.}, + Journal = {Math. Model. Num. Anal.}, + Number = {4}, + Pages = {631-648}, + Title = {A quasi-{Newton} algorithm based on a reduced model for + fluid-structure interactions problems in blood flows}, + Volume = {37}, + Year = {2003} +} + +###Article{ gerbeau-vidrascu-03, + Author = {Gerbeau, J-F. and Vidrascu, M.}, + Journal = {Math. Model. Num. Anal.}, + Number = {4}, + Pages = {631-648}, + Title = {A quasi-{Newton} algorithm based on a reduced model for + fluid-structure interactions problems in blood flows}, + Volume = {37}, + Year = {2003} +} + +@Article{ gerbeau-vidrascu-frey-05, + Author = {Gerbeau, J-F. and Vidrascu, M. and Frey, P.}, + Journal = {Comp. \& Struct.}, + Number = {2-3}, + Pages = {155-165}, + Title = {Fluid-Structure Interaction in Blood Flows on Geometries + based on Medical Imaging}, + Volume = {83}, + Year = {2005} +} + +###Article{ gerbeau-vidrascu-frey-05, + Author = {Gerbeau, J-F. and Vidrascu, M. and Frey, P.}, + Journal = {Comp. \& Struct.}, + Number = {2-3}, + Pages = {155-165}, + Title = {Fluid-Structure Interaction in Blood Flows on Geometries + based on Medical Imaging}, + Volume = {83}, + Year = {2005} +} + +@Article{ gersh_2011_2011, + Title = {2011 {{ACCF}}/{{AHA}} Guideline for the Diagnosis and + Treatment of Hypertrophic Cardiomyopathy: A Report of the + {{American College}} of {{Cardiology + Foundation}}/{{American Heart Association Task Force}} on + Practice Guidelines Developed in Collaboration with the + {{American Association}} for {{Thoracic Surgery}}, + {{American Society}} of Echocardiography, {{American + Society}} of Nuclear {{Cardiology}}, {{Heart Failure + Society}} of {{America}}, {{Heart Rhythm Society}}, + {{Society}} for {{Cardiovascular Angiography}} and + {{Interventions}}, and {{Society}} of {{Thoracic + Surgeons}}}, + Volume = {58}, + ShortTitle = {2011 {{ACCF}}/{{AHA}} Guideline for the Diagnosis and + Treatment of Hypertrophic Cardiomyopathy}, + Number = {25}, + JournalTitle = {Journal of the American College of Cardiology}, + Year = {2011}, + Pages = {e212--e260}, + Author = {Gersh, Bernard J. and Maron, Barry J. and Bonow, Robert O. + and Dearani, Joseph A. and Fifer, Michael A. and Link, Mark + S. and Naidu, Srihari S. and Nishimura, Rick A. and Ommen, + Steve R. and Rakowski, Harry} +} + +@Article{ geuzaine-remacle-09, + Author = {Geuzaine, C. and Remacle, J.-F.}, + Title = {Gmsh: A 3-D finite element mesh generator with built-in + pre- and post-processing facilities}, + Journal = {International Journal for Numerical Methods in + Engineering}, + Volume = {79}, + Number = {11}, + Publisher = {John Wiley & Sons, Ltd.}, + ISSN = {1097-0207}, + Pages = {1309--1331}, + Keywords = {computer-aided design, mesh generation, post-processing, + finite element method, open-source software}, + Year = {2009} +} + +###Article{ geuzaine-remacle-09, + Author = {Geuzaine, Christophe and Remacle, Jean-Francois}, + Title = {Gmsh: A 3-D finite element mesh generator with built-in + pre- and post-processing facilities}, + Journal = {International Journal for Numerical Methods in + Engineering}, + Volume = {79}, + Number = {11}, + Publisher = {John Wiley & Sons, Ltd.}, + ISSN = {1097-0207}, + URL = {http://dx.doi.org/10.1002/nme.2579}, + DOI = {10.1002/nme.2579}, + Pages = {1309--1331}, + Keywords = {computer-aided design, mesh generation, post-processing, + finite element method, open-source software}, + Year = {2009} +} + +@PhdThesis{ ghidaglia-84, + Author = {Ghidaglia, J.-M.}, + School = {Universit{\'e} de Paris-Sud, Orsay}, + Title = {Etude d'{\'e}coulements de fluides visqueux + incompressibles~: comportement pour les grands temps et + applications aux attracteurs}, + Type = {Th{\`e}se}, + Year = {1984} +} + +###PhdThesis{ ghidaglia-84, + Author = {Ghidaglia, J.-M.}, + School = {Universit{\'e} de Paris-Sud, Orsay}, + Title = {Etude d'{\'e}coulements de fluides visqueux + incompressibles~: comportement pour les grands temps et + applications aux attracteurs}, + Type = {Th{\`e}se}, + Year = {1984} +} + +@Article{ gifsen-van-de-vosse-janssen-99, + Annote = {hemodynamics, non newtonian}, + Author = {Gijsen, F.J.H. and van de Vosse, F.N and Janssen J.D.}, + code = {hemo}, + Journal = {J. Biomech.}, + Pages = {601-608}, + Title = {The influence of the non-{Newtonian} properties of blood + on the flow in large arteries: steady flow in a carotid + bifurcation model}, + Volume = {32}, + Year = {1999} +} + +###Article{ gifsen-van-de-vosse-janssen-99, + Annote = {hemodynamics, non newtonian}, + Author = {Gijsen, F.J.H. and van de Vosse, F.N and Janssen J.D.}, + code = {hemo}, + Journal = {J. Biomech.}, + Pages = {601-608}, + Title = {The influence of the non-{Newtonian} properties of blood + on the flow in large arteries: steady flow in a carotid + bifurcation model}, + Volume = {32}, + Year = {1999} +} + +@Article{ gijsen-allanic-van-de-vosse-janssen-99, + Annote = {hemodynamics, non newtonian}, + Author = {Gijsen, F.J.H. and Allanic, E. and van de Vosse, F.N and + Janssen J.D.}, + code = {hemo}, + Journal = {J. Biomech.}, + Pages = {705-713}, + Title = {The influence of the non-{Newtonian} properties of blood + on the flow in large arteries: unsteady flow in $90^o$ + curved tube}, + Volume = {32}, + Year = {1999} +} + +###Article{ gijsen-allanic-van-de-vosse-janssen-99, + Annote = {hemodynamics, non newtonian}, + Author = {Gijsen, F.J.H. and Allanic, E. and van de Vosse, F.N and + Janssen J.D.}, + code = {hemo}, + Journal = {J. Biomech.}, + Pages = {705-713}, + Title = {The influence of the non-{Newtonian} properties of blood + on the flow in large arteries: unsteady flow in $90^o$ + curved tube}, + Volume = {32}, + Year = {1999} +} + +@Article{ gijsen_influence_1999, + langid = {english}, + Title = {The Influence of the Non-{{Newtonian}} Properties of Blood + on the Flow in Large Arteries: Steady Flow in a Carotid + Bifurcation Model}, + Volume = {32}, + ISSN = {00219290}, + URL = {http://linkinghub.elsevier.com/retrieve/pii/S0021929099000159}, + DOI = {10.1016/S0021-9290(99)00015-9}, + ShortTitle = {The Influence of the Non-{{Newtonian}} Properties of Blood + on the Flow in Large Arteries}, + Number = {6}, + JournalTitle = {Journal of Biomechanics}, + URLDate = {2019-02-13}, + Year = {1999-06}, + Pages = {601-608}, + Author = {Gijsen, F.J.H. and van de Vosse, F.N. and Janssen, J.D.}, + Options = {useprefix=true} +} + +@InCollection{ gil2013stacom, + Title = {What a difference in biomechanics cardiac fiber makes}, + Author = {Gil, Debora and Borr{\`a}s, Agn{\'e}s and Aris, Ruth and + V{\'a}zquez, Mariano and Lafortune, Pierre and Houzeaux, + Guillaume and Aguado, Jazmin and Ballester, Manel and Li, + Chi Hion and Carreras, Francesc}, + BookTitle = {Statistical Atlases and Computational Models of the Heart. + Imaging and Modelling Challenges}, + Pages = {253--260}, + Year = {2013}, + Publisher = {Springer} +} + +@Article{ gilbert2007regional, + Author = {Gilbert, Stephen H and Benson, Alan P and Li, Pan and + Holden, Arun V}, + Title = {Regional localisation of left ventricular sheet structure: + integration with current models of cardiac fibre, sheet and + band structure}, + Journal = {European journal of cardio-thoracic surgery}, + Year = {2007}, + Volume = {32}, + Pages = {231--249}, + Number = {2}, + Publisher = {Oxford University Press} +} + +@Book{ girault-raviart-86, + Author = {Girault, V. and Raviart, P.-A.}, + Publisher = {Springer-Verlag}, + Title = { Finite element methods for {Navier-Stokes} equations}, + Year = {1986} +} + +###Book{ girault-raviart-86, + Author = {Girault, V. and Raviart, P.-A.}, + Publisher = {Springer-Verlag}, + Title = { Finite element methods for {Navier-Stokes} equations}, + Year = {1986} +} + +@Book{ girault2012finite, + Title = {Finite element methods for {N}avier-{S}tokes equations: + theory and algorithms}, + Author = {Girault, Vivette and Raviart, Pierre-Arnaud}, + Volume = {5}, + Year = {2012}, + Publisher = {Springer Science \& Business Media} +} + +###Book{ girault2012finite, + Title = {Finite element methods for {N}avier-{S}tokes equations: + theory and algorithms}, + Author = {Girault, Vivette and Raviart, Pierre-Arnaud}, + Volume = {5}, + Year = {2012}, + Publisher = {Springer Science \& Business Media} +} + +@Article{ gjesdal2011nature, + Title = {Cardiac remodeling at the population level -- risk + factors, screening, and outcomes}, + Author = {Gjesdal, Ola and Bluemke, David A and Lima, Joao A}, + Journal = {Nature Reviews Cardiology}, + Year = {2011}, + Number = {12}, + Pages = {673--685}, + Volume = {8}, + File = {:gjesdal11.pdf:PDF}, + Publisher = {Nature Publishing Group}, + timestamp = {2014/09/17} +} + +@Article{ glower1985circ, + Title = {Linearity of the Frank-Starling relationship in the intact + heart: the concept of preload recruitable stroke work.}, + Author = {Glower, D D and Spratt, J A and Snow, N D and Kabas, J S + and Davis, J W and Olsen, C O and Tyson, G S and Sabiston, + D C and Rankin, J S}, + Journal = {Circulation}, + Year = {1985}, + Number = {5}, + Pages = {994-1009}, + Volume = {71}, + Abstract = {The Frank-Starling relationship generally has been + examined with filling pressure as the index of preload, + resulting in a curvilinear function that plateaus at higher + filling pressures. To investigate this relationship further + in the intact heart, 32 dogs were chronically instrumented + with left ventricular and pleural micromanometers and with + regional (10 dogs) or global (22 dogs) ultrasonic dimension + transducers. Seven days after implantation, left + ventricular pressure and regional or global dimensions were + recorded in the conscious state. After autonomic blockade, + preload was varied by vena caval occlusion. Myocardial + function was assessed by calculating regional or global + stroke work, and preload was measured as end-diastolic + segment length or chamber volume. The relationship between + stroke work and either end-diastolic segment length or + chamber volume (termed the preload recruitable stroke work + relationship) was highly linear in every study (mean r = + .97) and could be quantified by a slope (MW) and + x-intercept (LW). Previous nonlinear relationships between + stroke work and filling pressure seemed to reflect the + exponential diastolic pressure-volume curve. Over the + physiologic range of systolic arterial pressures produced + by infusion of nitroprusside or phenylephrine, no + significant change was observed in MW or LW in the normal + dog. Calcium infusion increased both regional and global MW + by 71 +/- 19% and 65 +/- 9%, respectively (p less than + .02), with no significant change in LW. To normalize for + ventricular geometry and heart rate, stroke work was + computed from circumferential stress-strain data and + converted to myocardial power output, which was then + plotted against end-diastolic circumferential strain. This + relationship also was highly linear, and the slope, Mmp + (mW/cm3 of myocardium), is proposed as a potential measure + of intrinsic myocardial performance independent of loading, + geometry, and heart rate.}, + DOI = {10.1161/01.CIR.71.5.994}, + EPrint = {http://circ.ahajournals.org/content/71/5/994.full.pdf+html}, + File = {glower85.pdf:glower85.pdf:PDF}, + timestamp = {2015/09/15}, + URL = {http://circ.ahajournals.org/content/71/5/994.abstract} +} + +@InCollection{ glowinski-le-tallec-ravachol-tsikkinis-92, + Address = {Washington, DC}, + Author = {Glowinski, R. and Le Tallec, P. and Ravachol, M. and + Tsikkinis, V.}, + BookTitle = {Finite elements in fluids, Vol.\ 8 (Huntsville, AL, 1989)}, + mrnumber = {94b:65146}, + mrreviewer = {Rolf Rannacher}, + Pages = {137--163}, + Publisher = {Hemisphere}, + Title = {Numerical solution of the {N}avier-{S}tokes equations + modeling the flow of two incompressible nonmiscible viscous + fluids}, + Year = {1992} +} + +###InCollection{ glowinski-le-tallec-ravachol-tsikkinis-92, + Address = {Washington, DC}, + Author = {Glowinski, R. and Le Tallec, P. and Ravachol, M. and + Tsikkinis, V.}, + BookTitle = {Finite elements in fluids, Vol.\ 8 (Huntsville, AL, 1989)}, + mrnumber = {94b:65146}, + mrreviewer = {Rolf Rannacher}, + Pages = {137--163}, + Publisher = {Hemisphere}, + Title = {Numerical solution of the {N}avier-{S}tokes equations + modeling the flow of two incompressible nonmiscible viscous + fluids}, + Year = {1992} +} + +@Article{ glowinski-pan-hesla-joseph-99, + Author = {Glowinski, R. and Pan, T.W. and Hesla, T.I. and Joseph, + D.D.}, + Journal = {Int. J. of Multiphase Flow}, + Pages = {755-794}, + Title = {A distributed {Lagrange} mutiplier/fictitious domain + method for particulate flows}, + Volume = {25}, + Year = {1999} +} + +###Article{ glowinski-pan-hesla-joseph-99, + Author = {Glowinski, R. and Pan, T.W. and Hesla, T.I. and Joseph, + D.D.}, + Journal = {Int. J. of Multiphase Flow}, + Pages = {755-794}, + Title = {A distributed {Lagrange} mutiplier/fictitious domain + method for particulate flows}, + Volume = {25}, + Year = {1999} +} + +@Article{ glowinski-pan-periaux-94, + Author = {Glowinski, R. and Pan, T.W. and P{\'e}riaux, J.}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Number = {3-4}, + Pages = {283--303}, + Title = {A fictitious domain method for {D}irichlet problem and + applications}, + Volume = {111}, + Year = {1994} +} + +###Article{ glowinski-pan-periaux-94, + Author = {Glowinski, R. and Pan, T.W. and P{\'e}riaux, J.}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Number = {3-4}, + Pages = {283--303}, + Title = {A fictitious domain method for {D}irichlet problem and + applications}, + Volume = {111}, + Year = {1994} +} + +@Article{ glowinski-pironneau-79, + Author = {Glowinski, R. and Pironneau, O.}, + Journal = {Numer. Math.}, + Pages = {397-424}, + Title = {On a mixed finite element approximation of the {Stokes} + problem}, + Volume = {33}, + Year = {1979} +} + +###Article{ glowinski-pironneau-79, + Author = {Glowinski, R. and Pironneau, O.}, + Journal = {Numer. Math.}, + Pages = {397-424}, + Title = {On a mixed finite element approximation of the {Stokes} + problem}, + Volume = {33}, + Year = {1979} +} + +@Article{ glowinski-pironneau-79b, + Author = {Glowinski, R. and Pironneau, O.}, + Journal = {SIAM}, + Month = {April}, + Number = {2}, + Pages = {167-212}, + Title = {Numerical methods for the first biharmonic equation and + for the two-dimensional {Stokes} problem}, + Volume = {21}, + Year = {1979} +} + +###Article{ glowinski-pironneau-79b, + Author = {Glowinski, R. and Pironneau, O.}, + Journal = {SIAM}, + Month = {April}, + Number = {2}, + Pages = {167-212}, + Title = {Numerical methods for the first biharmonic equation and + for the two-dimensional {Stokes} problem}, + Volume = {21}, + Year = {1979} +} + +@Article{ glowinski-pironneau-92, + Author = {Glowinski, R. and Pironneau, O.}, + Journal = {Annu. Rev. Fluid Mech.}, + Pages = {167-204}, + Title = {Finite element methods for {Navier-Stokes} equations}, + Volume = {24}, + Year = {1992} +} + +###Article{ glowinski-pironneau-92, + Author = {Glowinski, R. and Pironneau, O.}, + Journal = {Annu. Rev. Fluid Mech.}, + Pages = {167-204}, + Title = {Finite element methods for {Navier-Stokes} equations}, + Volume = {24}, + Year = {1992} +} + +@Article{ goda-79, + Title = {{A multistep technique with implicit difference schemes + for calculating two- or three-dimensional cavity flows}}, + Author = {Goda, K.}, + Journal = jcp, + Volume = {30}, + Pages = {76--95}, + Year = {1979} +} + +###Article{ goda-79, + Title = {{A multistep technique with implicit difference schemes + for calculating two- or three-dimensional cavity flows}}, + Author = {Goda, K.}, + Journal = jcp, + Volume = {30}, + Pages = {76--95}, + Year = {1979} +} + +@Book{ godlewski-raviart-91, + Author = {Godlewski, E. and Raviart, P.-A.}, + Publisher = {Ellipses}, + Title = {Hyperbolic systems of conservation laws}, + Year = {1991} +} + +###Book{ godlewski-raviart-91, + Author = {Godlewski, E. and Raviart, P.-A.}, + Publisher = {Ellipses}, + Title = {Hyperbolic systems of conservation laws}, + Year = {1991} +} + +@Article{ goektepe2010, + Year = {2010}, + ISSN = {0178-7675}, + Journal = {Computational Mechanics}, + Volume = {45}, + Issue = {2-3}, + DOI = {10.1007/s00466-009-0434-z}, + Title = {Electromechanics of the heart: a unified approach to the + strongly coupled excitation–contraction problem}, + Publisher = {Springer-Verlag}, + Keywords = {Coupled problems; Cardiac electromechanics; + Excitation–contraction; Finite elements}, + Author = {Goektepe, S. and Kuhl, E.}, + Pages = {227-243}, + Language = {English} +} + +@Article{ goktepe2010jmps, + Title = {A generic approach towards finite growth with examples of + athlete's heart, cardiac dilation, and cardiac wall + thickening}, + Author = {Serdar Göktepe and Oscar John Abilez and Ellen Kuhl}, + Journal = {Journal of the Mechanics and Physics of Solids }, + Year = {2010}, + Number = {10}, + Pages = {1661 - 1680}, + Volume = {58}, + Abstract = {The objective of this work is to establish a generic + continuum-based computational concept for finite growth of + living biological tissues. The underlying idea is the + introduction of an incompatible growth configuration which + naturally introduces a multiplicative decomposition of the + deformation gradient into an elastic and a growth part. The + two major challenges of finite growth are the kinematic + characterization of the growth tensor and the + identification of mechanical driving forces for its + evolution. Motivated by morphological changes in cell + geometry, we illustrate a micromechanically motivated + ansatz for the growth tensor for cardiac tissue that can + capture both strain-driven ventricular dilation and + stress-driven wall thickening. Guided by clinical + observations, we explore three distinct pathophysiological + cases: athlete's heart, cardiac dilation, and cardiac wall + thickening. We demonstrate the computational solution of + finite growth within a fully implicit incremental iterative + Newton? Raphson based finite element solution scheme. The + features of the proposed approach are illustrated and + compared for the three different growth pathologies in + terms of a generic bi-ventricular heart model. }, + DOI = {http://dx.doi.org/10.1016/j.jmps.2010.07.003}, + File = {goktepe10.pdf:goktepe10.pdf:PDF}, + ISSN = {0022-5096}, + Keywords = {Biological growth}, + timestamp = {2015/09/22}, + URL = {http://www.sciencedirect.com/science/article/pii/S0022509610001328} +} + +@Article{ goktepe2010jtb, + Title = {A multiscale model for eccentric and concentric cardiac + growth through sarcomerogenesis}, + Author = {G{\"o}ktepe, S. and Abilez, O. J. and Parker, K. K. and + Kuhl, E.}, + Journal = {Journal of Theoretical biology}, + Year = {2010}, + Number = {3}, + Pages = {433--442}, + Volume = {265}, + File = {:goktepe10.pdf:PDF}, + Publisher = {Elsevier}, + timestamp = {2014/11/25} +} + +@Article{ gorlin-1951, + Author = {Gorlin, R. and Gorlin, S.C.}, + Journal = {Am. Heart J.}, + Pages = {1-29}, + Title = {Hydraulic formula for calculation of the area of the + stenotic mitral valve, other cardiac valves, and central + circulatory shunts.}, + Volume = {41}, + Year = {1951} +} + +###Article{ gorlin-1951, + Author = {Gorlin, R. and Gorlin, S.C.}, + Journal = {Am. Heart J.}, + Pages = {1-29}, + Title = {Hydraulic formula for calculation of the area of the + stenotic mitral valve, other cardiac valves, and central + circulatory shunts.}, + Volume = {41}, + Year = {1951} +} + +@Article{ goubergrits2015mri, + Title = {Is MRI-based CFD able to improve clinical treatment of + coarctations of aorta?}, + Author = {Goubergrits, L and Riesenkampff, E and Yevtushenko, P and + Schaller, J and Kertzscher, U and Berger, F and Kuehne, T}, + Journal = {Annals of biomedical engineering}, + Volume = {43}, + Number = {1}, + Pages = {168--176}, + Year = {2015}, + Publisher = {Springer} +} + +###Article{ goubergrits2015mri, + Title = {Is MRI-based CFD able to improve clinical treatment of + coarctations of aorta?}, + Author = {Goubergrits, L and Riesenkampff, E and Yevtushenko, P and + Schaller, J and Kertzscher, U and Berger, F and Kuehne, T}, + Journal = {Annals of biomedical engineering}, + Volume = {43}, + Number = {1}, + Pages = {168--176}, + Year = {2015}, + Publisher = {Springer} +} + +@Article{ goubergrits_impact_2013, + langid = {english}, + Title = {The {{Impact}} of {{MRI}}-Based {{Inflow}} for the + {{Hemodynamic Evaluation}} of {{Aortic Coarctation}}}, + Volume = {41}, + ISSN = {1573-9686}, + URL = {https://doi.org/10.1007/s10439-013-0879-2}, + DOI = {10.1007/s10439-013-0879-2}, + Abstract = {Aortic coarctation (CoA) accounting for 3–11\% of + congenital heart disease can be successfully treated. + Long-term results, however, have revealed decreased life + expectancy associated with abnormal hemodynamics. + Accordingly, an assessment of hemodynamics is the key + factor in treatment decisions and successful long-term + results. In this study, 3D angiography whole heart (3DWH) + and 4D phase-contrast magnetic resonance imaging (MRI) data + were acquired. Geometries of the thoracic aorta with CoAs + were reconstructed using ZIB-Amira software. X-ray + angiograms were used to evaluate the post-treatment + geometry. Computational fluid dynamics models in three + patients were created to simulate pre- and post-treatment + situations using the FLUENT program. The aim of the study + was to investigate the impact of the inlet velocity profile + (plug vs. MRI-based) with a focus on the peak systole + pressure gradient and wall shear stress (WSS). Results show + that helical flow at the aorta inlet can significantly + affect the assessment of pressure drop and WSS. Simplified + plug inlet velocity profiles significantly (p {$<$} 0.05) + overestimate the pressure drop in pre- and post-treatment + geometries and significantly (p {$<$} 0.05) underestimate + surface-averaged WSS. We conclude that the use of the + physiologically correct but time-expensive 4D MRI-based in + vivo velocity profile in CFD studies may be an important + step towards a patient-specific analysis of CoA + hemodynamics.}, + Number = {12}, + JournalTitle = {Annals of Biomedical Engineering}, + ShortJournal = {Ann Biomed Eng}, + URLDate = {2019-02-20}, + Year = {2013-12-01}, + Pages = {2575-2587}, + Author = {Goubergrits, Leonid and Mevert, R. and Yevtushenko, P. and + Schaller, J. and Kertzscher, U. and Meier, S. and Schubert, + S. and Riesenkampff, E. and Kuehne, T.} +} + +@Article{ goubergrits_patient-specific_2019, + langid = {english}, + Title = {Patient-Specific Requirements and Clinical Validation of + {{MRI}}-Based Pressure Mapping: {{A}} Two-Center Study in + Patients with Aortic Coarctation}, + Volume = {49}, + ISSN = {1522-2586}, + URL = {https://onlinelibrary.wiley.com/doi/abs/10.1002/jmri.26230}, + DOI = {10.1002/jmri.26230}, + ShortTitle = {Patient-Specific Requirements and Clinical Validation of + {{MRI}}-Based Pressure Mapping}, + Abstract = {Background Invasive peak-to-peak pressure gradients are + the current clinical reference standard for assessing + aortic coarctation. To obtain them, patients need to + undergo arterial heart catheterization. Unless an + intervention is performed, the procedure remains purely + diagnostic, while the concomitant risks remain. Purpose To + validate MRI-based pressure mapping against pressure drop + derived from heart catheterization and to define minimal + clinical requirements. Study Type Prospective clinical + validation study. Population Twenty-seven coarctation + patients with an indicated heart catheterization were + enrolled at two clinical centers. MRI Sequences 1.5T + including 4D velocity-encoded MRI and 3D anatomical imaging + of the aorta. Assessment Pressure drop across the stenosis + was calculated by pressure mapping based on the pressure + Poisson equation. Calculated pressure drops were compared + with catheter measured data. Spatial and temporal + resolution were analyzed using in silico phantom-based data + as well as in vivo measurements. Statistics Pressure drop + was compared to peak-to-peak measurements. A two-sample + paired mean equivalence test was used. Results In patients + without imaging artifacts and a required spatial resolution + ≥5 voxel/diameter, significant equivalence of pressure + mapping compared to heart catheterization was found (17.5 + ± 6.49 vs. 16.6 ± 6.53 mmHg, P {$<$} 0.001). Data + Conclusion Pressure mapping provides equivalent accuracy to + pressure drop obtained from heart catheterization in + patients 1) without previous stenting and 2) with + sufficient spatial image resolution (at least 5 + voxels/diameter). In these patients the method can reliably + be performed prior to the actual procedure, and thus allows + safe noninvasive treatment planning based on MRI. Level of + Evidence: 2 Technical Efficacy: Stage 3 J. Magn. Reson. + Imaging 2019;49:81–89.}, + Number = {1}, + JournalTitle = {Journal of Magnetic Resonance Imaging}, + URLDate = {2019-01-29}, + Year = {2019}, + Pages = {81-89}, + Author = {Goubergrits, Leonid and Hellmeier, Florian and Neumann, + Dominik and Mihalef, Viorel and Gulsun, Mehmet A. and + Chinali, Marcello and Secinaro, Aurelio and Runte, Kilian + and Schubert, Stephan and Berger, Felix and Kuehne, Titus + and Hennemuth, Anja and Kelm, Marcus} +} + +@Book{ graf-altinakar-99, + Author = {Graf, H. and Altinakar, M.S.}, + Publisher = {Presses polytechniques et universitaires romandes}, + Series = {Trait{\'e} de g{\'e}nie civil de l'{\'e}cole polytechnique + f{\'e}d{\'e}rale de Lausanne}, + Title = {Hydraulique fluviale : {\'e}coulement permanent uniforme + et non uniforme}, + Year = {1999} +} + +###Book{ graf-altinakar-99, + Author = {Graf, H. and Altinakar, M.S.}, + Publisher = {Presses polytechniques et universitaires romandes}, + Series = {Trait{\'e} de g{\'e}nie civil de l'{\'e}cole polytechnique + f{\'e}d{\'e}rale de Lausanne}, + Title = {Hydraulique fluviale : {\'e}coulement permanent uniforme + et non uniforme}, + Year = {1999} +} + +@Unpublished{ grandmont-desjardin-esteban, + Author = {Grandmont, C. and Desjardin, B. and Esteban, M.}, + Title = {in preparation} +} + +###Unpublished{ grandmont-desjardin-esteban, + Author = {Grandmont, C. and Desjardin, B. and Esteban, M.}, + Title = {in preparation} +} + +@Article{ grandmont-guimet-maday-01, + Author = {Grandmont, C. and Guimet, V. and Maday, Y.}, + fjournal = {Mathematical Models \& Methods in Applied Sciences}, + ISSN = {0218-2025}, + Journal = {Math. Models Methods Appl. Sci.}, + mrclass = {65M60 (65M12 74F10 74H99 76M25)}, + mrnumber = {MR1859827 (2002h:65152)}, + Number = {8}, + Pages = {1349--1377}, + Title = {Numerical analysis of some decoupling techniques for the + approximation of the unsteady fluid structure interaction}, + Volume = {11}, + Year = {2001} +} + +###Article{ grandmont-guimet-maday-01, + Author = {Grandmont, C. and Guimet, V. and Maday, Y.}, + fjournal = {Mathematical Models \& Methods in Applied Sciences}, + ISSN = {0218-2025}, + Journal = {Math. Models Methods Appl. Sci.}, + mrclass = {65M60 (65M12 74F10 74H99 76M25)}, + mrnumber = {MR1859827 (2002h:65152)}, + Number = {8}, + Pages = {1349--1377}, + Title = {Numerical analysis of some decoupling techniques for the + approximation of the unsteady fluid structure interaction}, + Volume = {11}, + Year = {2001} +} + +@InCollection{ grandmont-maday-98, + Address = {Providence, RI}, + Author = {Grandmont, C. and Maday, Y.}, + BookTitle = {Domain decomposition methods, 10 (Boulder, CO, 1997)}, + Pages = {262--270}, + Publisher = {Amer. Math. Soc.}, + Series = {Contemp. Math.}, + Title = {Nonconforming grids for the simulation of fluid-structure + interaction}, + Volume = {218}, + Year = {1998} +} + +###InCollection{ grandmont-maday-98, + Address = {Providence, RI}, + Author = {Grandmont, C. and Maday, Y.}, + BookTitle = {Domain decomposition methods, 10 (Boulder, CO, 1997)}, + Pages = {262--270}, + Publisher = {Amer. Math. Soc.}, + Series = {Contemp. Math.}, + Title = {Nonconforming grids for the simulation of fluid-structure + interaction}, + Volume = {218}, + Year = {1998} +} + +@Article{ grant1965notes, + Author = {Grant, Robert P.}, + Title = {Notes on the muscular architecture of the left ventricle}, + Journal = {Circulation}, + Year = {1965}, + Volume = {32}, + Pages = {301--308}, + Number = {2}, + Publisher = {Am Heart Assoc} +} + +@Article{ greenbaum1981, + Author = {Greenbaum, R. A. and Ho, S. Y. and Gibson, D. G. and + Becker, A. E. and Anderson, R. H.}, + Title = {Left ventricular fibre architecture in man}, + Volume = {45}, + Number = {3}, + Pages = {248-263}, + Year = {1981}, + Journal = {British Heart Journal} +} + +@Article{ greenwood2012l, + Title = {Cardiovascular magnetic resonance and single-photon + emission computed tomography for diagnosis of coronary + heart disease (CE-MARC): a prospective trial.}, + Author = {Greenwood, John P. and Maredia, Neil and Younger, John F. + and Brown, Julia M. and Nixon, Jane and Everett, Colin C. + and Bijsterveld, Petra and Ridgway, John P. and Radjenovic, + Aleksandra and Dickinson, Catherine J. and Ball, Stephen G. + and Plein, Sven}, + Journal = {Lancet}, + Year = {2012}, + Month = {Feb}, + Number = {9814}, + Pages = {453--460}, + Volume = {379}, + Abstract = {In patients with suspected coronary heart disease, + single-photon emission computed tomography (SPECT) is the + most widely used test for the assessment of myocardial + ischaemia, but its diagnostic accuracy is reported to be + variable and it exposes patients to ionising radiation. The + aim of this study was to establish the diagnostic accuracy + of a multiparametric cardiovascular magnetic resonance + (CMR) protocol with x-ray coronary angiography as the + reference standard, and to compare CMR with SPECT, in + patients with suspected coronary heart disease.In this + prospective trial patients with suspected angina pectoris + and at least one cardiovascular risk factor were scheduled + for CMR, SPECT, and invasive x-ray coronary angiography. + CMR consisted of rest and adenosine stress perfusion, cine + imaging, late gadolinium enhancement, and MR coronary + angiography. Gated adenosine stress and rest SPECT used + (99m)Tc tetrofosmin. The primary outcome was diagnostic + accuracy of CMR. This trial is registered at + controlled-trials.com, number ISRCTN77246133.In the 752 + recruited patients, 39\% had significant CHD as identified + by x-ray angiography. For multiparametric CMR the + sensitivity was 86·5\% (95\% CI 81·8-90·1), specificity + 83·4\% (79·5-86·7), positive predictive value 77·2\%, + (72·1-81·6) and negative predictive value 90·5\% + (87·1-93·0). The sensitivity of SPECT was 66·5\% (95\% + CI 60·4-72·1), specificity 82·6\% (78·5-86·1), + positive predictive value 71·4\% (65·3-76·9), and + negative predictive value 79·1\% (74·8-82·8). The + sensitivity and negative predictive value of CMR and SPECT + differed significantly (p<0·0001 for both) but specificity + and positive predictive value did not (p=0·916 and + p=0·061, respectively).CE-MARC is the largest, + prospective, real world evaluation of CMR and has + established CMR's high diagnostic accuracy in coronary + heart disease and CMR's superiority over SPECT. It should + be adopted more widely than at present for the + investigation of coronary heart disease.British Heart Foundation.}, + DOI = {10.1016/S0140-6736(11)61335-4}, + Institution = {Multidisciplinary Cardiovascular Research Centre and Leeds + Institute of Genetics, Health and Therapeutics, University + of Leeds, Leeds, UK. j.greenwood@leeds.ac.uk}, + Keywords = {Adenosine, diagnostic use; Contrast Media; Coronary + Angiography; Coronary Disease, diagnosis/radionuclide + imaging; Gadolinium DTPA, diagnostic use; Humans; Magnetic + Resonance Angiography; Myocardial Perfusion Imaging; + Predictive Value of Tests; Sensitivity and Specificity; + Tomography, Emission-Computed, Single-Photon}, + Language = {eng}, + medline-pst = {ppublish}, + owner = {stoeckc}, + pii = {S0140-6736(11)61335-4}, + pmid = {22196944}, + timestamp = {2015.07.24}, + URL = {http://dx.doi.org/10.1016/S0140-6736(11)61335-4} +} + +@Article{ grenier-99, + Author = {Grenier, E.}, + Journal = {ESIAM: Math. Model. Numer. Anal.}, + Number = {5}, + Pages = {965--970}, + Title = {On the derivation of homogeneous hydrostatic equations}, + Volume = {33}, + Year = {1999} +} + +###Article{ grenier-99, + Author = {Grenier, E.}, + Journal = {ESIAM: Math. Model. Numer. Anal.}, + Number = {5}, + Pages = {965--970}, + Title = {On the derivation of homogeneous hydrostatic equations}, + Volume = {33}, + Year = {1999} +} + +@Article{ grinberg_outflow_2008, + Title = {Outflow Boundary Conditions for Arterial Networks with + Multiple Outlets}, + Volume = {36}, + Number = {9}, + JournalTitle = {Annals of biomedical engineering}, + Year = {2008}, + Pages = {1496--1514}, + Author = {Grinberg, Leopold and Karniadakis, George Em} +} + +@Book{ grjotheim-kvande-93, + Author = {Grjotheim, K. and Kvande, H.}, + Publisher = {Aluminium-Verlag}, + Title = {Introduction to Aluminium electrolysis}, + Year = {1993} +} + +###Book{ grjotheim-kvande-93, + Author = {Grjotheim, K. and Kvande, H.}, + Publisher = {Aluminium-Verlag}, + Title = {Introduction to Aluminium electrolysis}, + Year = {1993} +} + +@Article{ grobbelaar-08, + Author = {Grobbelaar-Van Dalsen, M.}, + date-added = {2012-02-27 13:51:21 +0000}, + date-modified = {2012-02-27 13:52:42 +0000}, + DOI = {10.1007/s00021-006-0236-4}, + Journal = {J. Math. Fluid Mech.}, + Number = {3}, + Pages = {388--401}, + Title = {On a fluid-structure model in which the dynamics of the + structure involves the shear stress due to the fluid}, + Volume = {10}, + Year = {2008} +} + +###Article{ grobbelaar-08, + Author = {Grobbelaar-Van Dalsen, M.}, + date-added = {2012-02-27 13:51:21 +0000}, + date-modified = {2012-02-27 13:52:42 +0000}, + DOI = {10.1007/s00021-006-0236-4}, + Journal = {J. Math. Fluid Mech.}, + Number = {3}, + Pages = {388--401}, + Title = {On a fluid-structure model in which the dynamics of the + structure involves the shear stress due to the fluid}, + Volume = {10}, + Year = {2008}, + bdsk-url-1 = {http://dx.doi.org/10.1007/s00021-006-0236-4} +} + +@Article{ grobbelaar-09, + Author = {Grobbelaar-Van Dalsen, M.}, + date-added = {2012-02-27 13:52:50 +0000}, + date-modified = {2012-02-27 13:53:16 +0000}, + DOI = {10.1080/00036810903114841}, + Journal = {Appl. Anal.}, + Number = {7}, + Pages = {1053--1065}, + Title = {A new approach to the stabilization of a fluid-structure + interaction model}, + Volume = {88}, + Year = {2009} +} + +###Article{ grobbelaar-09, + Author = {Grobbelaar-Van Dalsen, M.}, + date-added = {2012-02-27 13:52:50 +0000}, + date-modified = {2012-02-27 13:53:16 +0000}, + DOI = {10.1080/00036810903114841}, + Journal = {Appl. Anal.}, + Number = {7}, + Pages = {1053--1065}, + Title = {A new approach to the stabilization of a fluid-structure + interaction model}, + Volume = {88}, + Year = {2009}, + bdsk-url-1 = {http://dx.doi.org/10.1080/00036810903114841} +} + +@Article{ gudbjartsson1995rician, + Author = {Gudbjartsson, H{\'a}kon and Patz, Samuel}, + Title = {{The Rician distribution of noisy MRI data}}, + Journal = {{Magnetic Resonance in Medicine}}, + Year = {1995}, + Volume = {34}, + Pages = {910--914}, + Number = {6}, + Publisher = {Wiley Online Library} +} + +@Article{ guermond-96, + Author = {Guermond, J.-L.}, + Journal = {M2AN}, + Pages = {637-667}, + Title = {Some implementation of projection methods for + {N}avier-{S}tokes equations}, + Volume = 30, + Year = 1996 +} + +###Article{ guermond-96, + Author = {Guermond, J.-L.}, + Journal = {M2AN}, + Pages = {637-667}, + Title = {Some implementation of projection methods for + {N}avier-{S}tokes equations}, + Volume = 30, + Year = 1996 +} + +@Unpublished{ guermond-minev, + Author = {Guermond, J.L. and Minev, P.D.}, + code = {mhd45}, + Note = {to appear in Num. Meth. PDE}, + Title = {Mixed finite element approximation of an {MHD} problem + involving conducting and insulating regions: the {3D} + case} +} + +###Unpublished{ guermond-minev, + Author = {Guermond, J.L. and Minev, P.D.}, + code = {mhd45}, + Note = {to appear in Num. Meth. PDE}, + Title = {Mixed finite element approximation of an {MHD} problem + involving conducting and insulating regions: the {3D} + case} +} + +@Article{ guermond-minev-shen-06, + Author = {Guermond, J.-L. and Minev, P. and Shen, J.}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Pages = {6011-6045}, + Title = {An Overview of Projection methods for incompressible + flows}, + Volume = 195, + Year = 2006 +} + +###Article{ guermond-minev-shen-06, + Author = {Guermond, J.-L. and Minev, P. and Shen, J.}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Pages = {6011-6045}, + Title = {An Overview of Projection methods for incompressible + flows}, + Volume = 195, + Year = 2006 +} + +@Unpublished{ guermond-minev-shen-xx, + Author = {Guermond, J.-L. and Minev, P. and Shen, J.}, + Note = {Submitted to {\em Comp. Meth. Appl. Mech. Engng.}, 2004.}, + Title = {An Overview of Projection methods for incompressible + flows} +} + +###Unpublished{ guermond-minev-shen-xx, + Author = {Guermond, J.-L. and Minev, P. and Shen, J.}, + Note = {Submitted to {\em Comp. Meth. Appl. Mech. Engng.}, 2004.}, + Title = {An Overview of Projection methods for incompressible + flows} +} + +@Article{ guermond-quartapelle-98, + Author = {Guermond, J.-L. and Quartapelle, L.}, + fjournal = {International Journal for Numerical Methods in Fluids}, + Journal = {Internat. J. Numer. Methods Fluids}, + Number = {9}, + Pages = {1039--1053}, + Title = {On stability and convergence of projection methods based + on pressure {P}oisson equation}, + Volume = {26}, + Year = {1998} +} + +###Article{ guermond-quartapelle-98, + Author = {Guermond, J.-L. and Quartapelle, L.}, + fjournal = {International Journal for Numerical Methods in Fluids}, + Journal = {Internat. J. Numer. Methods Fluids}, + Number = {9}, + Pages = {1039--1053}, + Title = {On stability and convergence of projection methods based + on pressure {P}oisson equation}, + Volume = {26}, + Year = {1998} +} + +@Article{ guermond03_projmetherror, + Author = "Guermond, J.~L. and Shien, J.", + Title = "{On the error estimates for the rotational + pressure-correction projection methods}", + Journal = mc, + Volume = "73", + Number = "248", + Pages = "1719--1737", + Year = "2003" +} + +###Article{ guermond03_projmetherror, + Author = "Guermond, J.~L. and Shien, J.", + Title = "{On the error estimates for the rotational + pressure-correction projection methods}", + Journal = mc, + Volume = "73", + Number = "248", + Pages = "1719--1737", + Year = "2003" +} + +@Article{ guermond06_overview, + Author = "Guermond, J.~L and Minev, P. and Shen, J.", + Title = "An overview of projection methods for incompressible + flows", + Journal = cma, + Volume = "195", + Number = "44--47", + Pages = "6011--6045", + Year = "2006" +} + +###Article{ guermond06_overview, + Author = "Guermond, J.~L and Minev, P. and Shen, J.", + Title = "An overview of projection methods for incompressible + flows", + Journal = cma, + Volume = "195", + Number = "44--47", + Pages = "6011--6045", + Year = "2006" +} + +@Article{ guermond06_projmeththeory, + Author = "Guermond, J.~L. and Quartapelle, L.", + Title = "{On stability and convergence of projection methods based + on pressure Poisson equation}", + Journal = ijnmf, + Volume = "26", + Pages = "1039--1053", + Year = "2006" +} + +###Article{ guermond06_projmeththeory, + Author = "Guermond, J.~L. and Quartapelle, L.", + Title = "{On stability and convergence of projection methods based + on pressure Poisson equation}", + Journal = ijnmf, + Volume = "26", + Pages = "1039--1053", + Year = "2006" +} + +@Article{ guermond2006overview, + Title = {An overview of projection methods for incompressible + flows}, + Author = {Guermond, JL and Minev, Peter and Shen, Jie}, + Journal = {Computer methods in applied mechanics and engineering}, + Volume = {195}, + Number = {44}, + Pages = {6011--6045}, + Year = {2006}, + Publisher = {Elsevier} +} + +@Article{ guermond2006reviewcmame, + Title = {An overview of projection methods for incompressible + flows}, + Author = {Guermond, J.-L. and Minev, P. and Shen, Jie}, + Journal = {Computer Methods in Applied Mechanics and Engineering}, + Year = {2006}, + Number = {44-47}, + Volume = {195} +} + +@Article{ guermond98_nsanalysis, + Author = "Guermond, J.~L. and Quartapelle, L.", + Title = "{On the approximation of the unsteady {Navier-Stokes} + equations by finite element projection methods}", + Journal = {Num. Math.}, + Volume = "80", + Number = "", + Pages = "207--238", + Year = "1998" +} + +###Article{ guermond98_nsanalysis, + Author = "Guermond, J.~L. and Quartapelle, L.", + Title = "{On the approximation of the unsteady {Navier-Stokes} + equations by finite element projection methods}", + Journal = {Num. Math.}, + Volume = "80", + Number = "", + Pages = "207--238", + Year = "1998" +} + +@Article{ guermond_overview_2006, + langid = {english}, + Title = {An Overview of Projection Methods for Incompressible + Flows}, + Volume = {195}, + ISSN = {00457825}, + URL = {http://linkinghub.elsevier.com/retrieve/pii/S0045782505004640}, + DOI = {10.1016/j.cma.2005.10.010}, + Number = {44-47}, + JournalTitle = {Computer Methods in Applied Mechanics and Engineering}, + URLDate = {2016-10-13}, + Date = {2006-09}, + Pages = {6011-6045}, + Author = {Guermond, J.L. and Minev, P. and Shen, Jie} +} + +@Article{ guerra_data_2018, + langid = {english}, + Title = {A Data Assimilation Approach for Non-{{Newtonian}} Blood + Flow Simulations in {{3D}} Geometries}, + Volume = {321}, + ISSN = {00963003}, + URL = {https://linkinghub.elsevier.com/retrieve/pii/S0096300317307282}, + DOI = {10.1016/j.amc.2017.10.029}, + JournalTitle = {Applied Mathematics and Computation}, + URLDate = {2019-02-28}, + Year = {2018-03}, + Pages = {176-194}, + Author = {Guerra, Telma and Catarino, Catarina and Mestre, Tania and + Santos, Sara and Tiago, Jorge and Sequeira, Adelia} +} + +@Article{ guibert2014group, + Title = {Group-wise construction of reduced models for + understanding and characterization of pulmonary blood flows + from medical images}, + Author = {Guibert, Romain and Mcleod, Kristin and Caiazzo, Alfonso + and Mansi, Tommaso and Fern{\'a}ndez, Miguel A and + Sermesant, Maxime and Pennec, Xavier and Vignon-Clementel, + Irene E and Boudjemline, Younes and Gerbeau, + Jean-Fr{\'e}d{\'e}ric}, + Journal = {Medical Image Analysis}, + Volume = {18}, + Number = {1}, + Pages = {63--82}, + Year = {2014}, + Publisher = {Elsevier} +} + +@Article{ guidoboni-08, + Author = {Guidoboni, G. and Glowinski, R. and Cavallini, N. and + Canic, S. and Lapin, S.}, + Journal = {Appl. Math. Lett.}, + Note = {{D}{O}{I}: 10.1016/j.aml.2008.05.006}, + Title = {A kinematically coupled time-splitting scheme for + fluid-structure interaction in blood flow}, + Volume = {In Press}, + Year = {2008} +} + +###Article{ guidoboni-08, + Author = {Guidoboni, G. and Glowinski, R. and Cavallini, N. and + Canic, S. and Lapin, S.}, + Journal = {Appl. Math. Lett.}, + Note = {{D}{O}{I}: 10.1016/j.aml.2008.05.006}, + Title = {A kinematically coupled time-splitting scheme for + fluid-structure interaction in blood flow}, + Volume = {In Press}, + Year = {2008} +} + +@Article{ guillard-farhat-00, + Author = {Guillard, H. and Farhat, C.}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Number = {11-12}, + Pages = {1467--1482}, + Title = {On the significance of the geometric conservation law for + flow computations on moving meshes}, + Volume = {190}, + Year = {2000} +} + +###Article{ guillard-farhat-00, + Author = {Guillard, H. and Farhat, C.}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Number = {11-12}, + Pages = {1467--1482}, + Title = {On the significance of the geometric conservation law for + flow computations on moving meshes}, + Volume = {190}, + Year = {2000} +} + +@Article{ guillope-82, + Author = {Guillope, C.}, + Journal = {Ann. Inst. Fourier Grenoble}, + Number = {3}, + Pages = {1-37}, + Title = {Comportement {\`a} l'infini des solutions des + {\'e}quations de {Navier-Stokes} et propri{\'e}t{\'e}s des + ensembles fonctionnels invariants (ou attracteurs)}, + Volume = {32}, + Year = {1982} +} + +###Article{ guillope-82, + Author = {Guillope, C.}, + Journal = {Ann. Inst. Fourier Grenoble}, + Number = {3}, + Pages = {1-37}, + Title = {Comportement {\`a} l'infini des solutions des + {\'e}quations de {Navier-Stokes} et propri{\'e}t{\'e}s des + ensembles fonctionnels invariants (ou attracteurs)}, + Volume = {32}, + Year = {1982} +} + +@Article{ guillope3, + Author = {Guillope, C. and Saut, J-C.}, + Journal = {Nonlinear Anal., Theory, Meth. Appl.}, + Number = {9}, + Pages = {849-869}, + Title = {Existence results for the flow of viscoelastic fluids with + a differential constitutive law}, + Volume = {15}, + Year = {1990} +} + +###Article{ guillope3, + Author = {Guillope, C. and Saut, J-C.}, + Journal = {Nonlinear Anal., Theory, Meth. Appl.}, + Number = {9}, + Pages = {849-869}, + Title = {Existence results for the flow of viscoelastic fluids with + a differential constitutive law}, + Volume = {15}, + Year = {1990} +} + +@Book{ gunzburger-89, + Author = {Gunzburger, M.D.}, + Publisher = {{Academic Press}}, + Title = {Finite element methods for viscous incompressible flows~: + a guide to theory, practice, and algorithms}, + Year = {1989} +} + +###Book{ gunzburger-89, + Author = {Gunzburger, M.D.}, + Publisher = {{Academic Press}}, + Title = {Finite element methods for viscous incompressible flows~: + a guide to theory, practice, and algorithms}, + Year = {1989} +} + +@Article{ gunzburger-meir-peterson-91, + Annote = {mhd, existence, finite element}, + Author = {Gunzburger, M.D. and Meir, A.J. and Peterson, J.S.}, + code = {mhd8}, + Journal = {Mathematics of Computation}, + Month = {April}, + Number = {194}, + Pages = {523-563}, + Title = {On the existence, uniqueness, and finite element + approximation of solutions of the equations of stationary, + incompressible magnetohydrodynamics}, + Volume = {56}, + Year = {1991} +} + +###Article{ gunzburger-meir-peterson-91, + Annote = {mhd, existence, finite element}, + Author = {Gunzburger, M.D. and Meir, A.J. and Peterson, J.S.}, + code = {mhd8}, + Journal = {Mathematics of Computation}, + Month = {April}, + Number = {194}, + Pages = {523-563}, + Title = {On the existence, uniqueness, and finite element + approximation of solutions of the equations of stationary, + incompressible magnetohydrodynamics}, + Volume = {56}, + Year = {1991} +} + +@Book{ gunzburger_perspectives_2003, + Location = {{Philadelphia, PA}}, + Title = {Perspectives in Flow Control and Optimization}, + ISBN = {978-0-89871-527-9}, + PageTotal = {261}, + Series = {Advances in Design and Control}, + Publisher = {{Society for Industrial and Applied Mathematics}}, + Year = {2003}, + Author = {Gunzburger, Max D.} +} + +@Article{ gurev2011, + Title = {Models of cardiac electromechanics based on individual + hearts imaging data}, + Author = {Gurev, Viatcheslav and Lee, Ted and Constantino, Jason and + Arevalo, Hermenegild and Trayanova, Natalia A}, + Journal = {Biomechanics and modeling in mechanobiology}, + Volume = {10}, + Number = {3}, + Pages = {295--306}, + Year = {2011}, + Publisher = {Springer} +} + +@Book{ gurtin-81, + Address = {New York}, + Author = {Gurtin, M.E.}, + Publisher = {Academic Press Inc.}, + Series = {Mathematics in Science and Engineering}, + Title = {An introduction to continuum mechanics}, + Volume = {158}, + Year = {1981} +} + +###Book{ gurtin-81, + Address = {New York}, + Author = {Gurtin, M.E.}, + Publisher = {Academic Press Inc.}, + Series = {Mathematics in Science and Engineering}, + Title = {An introduction to continuum mechanics}, + Volume = {158}, + Year = {1981} +} + +@Article{ ha2019mrm, + Title = {4D Flow MRI quantification of blood flow patterns, + turbulence and pressure drop in normal and stenotic + prosthetic heart valves}, + Author = {Ha, Hojin and Kvitting, John-Peder Escobar and Dyverfeldt, + Petter and Ebbers, Tino}, + Journal = {Magnetic resonance imaging}, + Volume = {55}, + Pages = {118--127}, + Year = {2019}, + Publisher = {Elsevier} +} + +@Article{ ha_turbulent_2016, + Title = {Turbulent {{Kinetic Energy Measurement Using Phase + Contrast MRI}} for {{Estimating}} the {{Post}}-{{Stenotic + Pressure Drop}}: {{In Vitro Validation}} and {{Clinical + Application}}}, + Volume = {11}, + ISSN = {1932-6203}, + URL = {http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0151540}, + DOI = {10.1371/journal.pone.0151540}, + ShortTitle = {Turbulent {{Kinetic Energy Measurement Using Phase + Contrast MRI}} for {{Estimating}} the {{Post}}-{{Stenotic + Pressure Drop}}}, + Abstract = {Background Although the measurement of turbulence kinetic + energy (TKE) by using magnetic resonance imaging (MRI) has + been introduced as an alternative index for quantifying + energy loss through the cardiac valve, experimental + verification and clinical application of this parameter are + still required. Objectives The goal of this study is to + verify MRI measurements of TKE by using a phantom stenosis + with particle image velocimetry (PIV) as the reference + standard. In addition, the feasibility of measuring TKE + with MRI is explored. Methods MRI measurements of TKE + through a phantom stenosis was performed by using clinical + 3T MRI scanner. The MRI measurements were verified + experimentally by using PIV as the reference standard. In + vivo application of MRI-driven TKE was explored in seven + patients with aortic valve disease and one healthy + volunteer. Transvalvular gradients measured by MRI and + echocardiography were compared. Results MRI and PIV + measurements of TKE are consistent for turbulent flow + (0.666 {$<$} R2 {$<$} 0.738) with a mean difference of + −11.13 J/m3 (SD = 4.34 J/m3). Results of MRI and PIV + measurements differ by 2.76 ± 0.82 cm/s (velocity) and + −11.13 ± 4.34 J/m3 (TKE) for turbulent flow (Re {$>$} + 400). The turbulence pressure drop correlates strongly with + total TKE (R2 = 0.986). However, in vivo measurements of + TKE are not consistent with the transvalvular pressure + gradient estimated by echocardiography. Conclusions These + results suggest that TKE measurement via MRI may provide a + potential benefit as an energy-loss index to characterize + blood flow through the aortic valve. However, further + clinical studies are necessary to reach definitive + conclusions regarding this technique.}, + Number = {3}, + JournalTitle = {PLOS ONE}, + ShortJournal = {PLOS ONE}, + URLDate = {2017-10-12}, + Year = {2016-03-15}, + Pages = {e0151540}, + Author = {Ha, Hojin and Kim, Guk Bae and Kweon, Jihoon and Huh, + Hyung Kyu and Lee, Sang Joon and Koo, Hyun Jung and Kang, + Joon-Won and Lim, Tae-Hwan and Kim, Dae-Hee and Kim, + Young-Hak and Kim, Namkug and Yang, Dong Hyun} +} + +@Article{ ha_validation_2019, + Title = {Validation of pressure drop assessment using 4D flow + MRI-based turbulence production in various shapes of aortic + stenoses}, + Author = {Ha, Hojin and Kvitting, John-Peder and Dyverfeldt, Petter + and Ebbers, Tino}, + Journal = {Magnetic resonance in medicine}, + Volume = {81}, + Number = {2}, + Pages = {893--906}, + Year = {2019}, + Publisher = {Wiley Online Library} +} + +@Book{ haacke1999magnetic, + Title = {Magnetic resonance imaging: physical principles and + sequence design}, + Author = {Haacke, E Mark and Brown, Robert W and Thompson, Michael R + and Venkatesan, Ramesh and others}, + Volume = {82}, + Year = {1999}, + Publisher = {Wiley-Liss New York:} +} + +###Book{ haacke1999magnetic, + Title = {Magnetic resonance imaging: physical principles and + sequence design}, + Author = {Haacke, E Mark and Brown, Robert W and Thompson, Michael R + and Venkatesan, Ramesh and others}, + Volume = {82}, + Year = {1999}, + Publisher = {Wiley-Liss New York:} +} + +@Article{ hahn1950physrev, + Title = {Spin Echoes}, + Author = {Hahn, E. L.}, + Journal = {Physical Review}, + Year = {1950}, + Number = {4}, + Pages = {580--594}, + Volume = {80}, + Abstract = {Intense radiofrequency power in the form of pulses is + applied to an ensemble of spins in a liquid placed in a + large static magnetic field H0. The frequency of the pulsed + r-f power satisfies the condition for nuclear magnetic + resonance, and the pulses last for times which are short + compared with the time in which the nutating macroscopic + magnetic moment of the entire spin ensemble can decay. + After removal of the pulses a non-equilibrium configuration + of isochromatic macroscopic moments remains in which the + moment vectors precess freely. Each moment vector has a + magnitude at a given precession frequency which is + determined by the distribution of Larmor frequencies + imposed upon the ensemble by inhomogeneities in H0. At + times determined by pulse sequences applied in the past the + constructive interference of these moment vectors gives + rise to observable spontaneous nuclear induction signals. + The properties and underlying principles of these spin echo + signals are discussed with use of the Bloch theory. + Relaxation times are measured directly and accurately from + the measurement of echo amplitudes. An analysis includes + the effect on relaxation measurements of the self-diffusion + of liquid molecules which contain resonant nuclei. + Preliminary studies are made of several effects associated + with spin echoes, including the observed shifts in magnetic + resonance frequency of spins due to magnetic shielding of + nuclei contained in molecules.}, + DOI = {10.1103/PhysRev.80.580}, + owner = {david}, + timestamp = {2015-05-19 16:44:19}, + URL = {http://link.aps.org/doi/10.1103/PhysRev.80.580}, + URLDate = {2015-05-19} +} + +@Article{ haj2012aorticvalve3d, + Title = {A general three-dimensional parametric geometry of the + native aortic valve and root for biomechanical modeling}, + Author = {Haj-Ali, R. and Marom, G. and Zekry, S. and Rosenfeld, M. + and Raanani, E.}, + Journal = {Journal of biomechanics}, + Volume = {45}, + Number = {14}, + Pages = {2392--2397}, + Year = {2012}, + Publisher = {Elsevier} +} + +@Article{ hales2012pbmb, + Title = {Histo-anatomical structure of the living isolated rat + heart in two contraction states assessed by diffusion + tensor MRI.}, + Author = {Hales, Patrick W. and Schneider, J{\"{u}}rgen E. and + Burton, Rebecca A B. and Wright, Benjamin J. and + Bollensdorff, Christian and Kohl, Peter}, + Journal = {Prog Biophys Mol Biol}, + Year = {2012}, + Number = {2-3}, + Pages = {319--330}, + Volume = {110}, + Abstract = {Deformation and wall-thickening of ventricular myocardium + are essential for cardiac pump function. However, insight + into the histo-anatomical basis for cardiac tissue + re-arrangement during contraction is limited. In this + report, we describe dynamic changes in regionally + prevailing cardiomyocyte (fibre) and myolaminar (sheet) + orientations, using Diffusion Tensor Imaging (DTI) of + ventricles in the same living heart in two different + mechanical states. Hearts, isolated from Sprague-Dawley + rats, were Langendorff-perfused and imaged, initially in + their slack state during cardioplegic arrest, then during + lithium-induced contracture. Regional fibre- and + sheet-orientations were derived from DTI-data on a + voxel-wise basis. Contraction was accompanied with a + decrease in left-handed helical fibres (handedness relative + to the baso-apical direction) in basal, equatorial, and + apical sub-epicardium (by 14.0\%, 17.3\%, 15.8\% + respectively; p < 0.001), and an increase in right-handed + helical fibres of the sub-endocardium (by 11.0\%, 12.1\% + and 16.1\%, respectively; p < 0.001). Two predominant + sheet-populations were observed, with sheet-angles of + either positive (?+) or negative (?-) polarity relative to + a 'chamber-horizontal plane' (defined as normal to the left + ventricular long-axis). In contracture, mean + 'intersection'-angle (geometrically quantifiable + intersection of sheet-angle projections) between ?+ and ?- + sheet-populations increased from 86.2 ± 5.5° (slack) to + 108.3 ± 5.4° (p < 0.001). Subsequent high-resolution + DTI of fixed myocardium, and histological sectioning, + reconfirmed the existence of alternating sheet-plane + populations. Our results suggest that myocardial tissue + layers in alternating sheet-populations align into a more + chamber-horizontal orientation during contraction. This + re-arrangement occurs via an accordion-like mechanism that, + combined with inter-sheet slippage, can significantly + contribute to ventricular deformation, including + wall-thickening in a predominantly centripetal direction + and baso-apical shortening.}, + DOI = {10.1016/j.pbiomolbio.2012.07.014}, + Institution = {Department of Cardiovascular Medicine, University of + Oxford, Oxford OX3 7BN, UK. p.hales@ucl.ac.uk}, + Keywords = {Animals; Diffusion Tensor Imaging; Female; Heart, anatomy + /&/ histology; Muscle Contraction; Myocardium, cytology; + Perfusion; Rats; Rats, Sprague-Dawley; Tissue Survival}, + Language = {eng}, + medline-pst = {ppublish}, + owner = {stoeckc}, + pii = {S0079-6107(12)00067-3}, + pmid = {23043978}, + timestamp = {2015.07.24}, + URL = {http://dx.doi.org/10.1016/j.pbiomolbio.2012.07.014} +} + +@Article{ hall1995jacc, + Title = {Time course of improvement in left ventricular function, + mass and geometry in patients with congestive heart failure + treated with beta-adrenergic blockade}, + Author = {Hall, Shelley A. and Cigarroa, Carlos G. and Marcoux, + Lucille and Risser, Richard C. and Grayburn, Paul A. and + Eichhorn, Eric J.}, + Journal = {Journal of the American College of Cardiology}, + Year = {1995}, + Number = {5}, + Pages = {1154-1161}, + Volume = {25}, + DOI = {10.1016/0735-1097(94)00543-Y}, + EPrint = {/data/Journals/JAC/24317/0543Y.pdf}, + File = {hall95.pdf:hall95.pdf:PDF}, + timestamp = {2015/09/13}, + URL = { + http://dx.doi.org/10.1016/0735-1097(94)00543-Y} +} + +@Article{ hall_calculation_1989, + langid = {english}, + Title = {Calculation of Unsteady Flows in Turbomachinery Using the + {{linearizedEuler}} Equations}, + Volume = {27}, + ISSN = {0001-1452, 1533-385X}, + URL = {http://arc.aiaa.org/doi/10.2514/3.10178}, + DOI = {10.2514/3.10178}, + Number = {6}, + JournalTitle = {AIAA Journal}, + URLDate = {2019-08-24}, + Date = {1989-06}, + Pages = {777-787}, + Author = {Hall, Kenneth C. and Crawley, Edward F.} +} + +@Article{ hansbo-05, + Author = {Hansbo, P.}, + Journal = {GAMM-Mitt.}, + Number = {2}, + Pages = {183--206}, + Title = {Nitsche's method for interface problems in computational + mechanics}, + Volume = {28}, + Year = {2005} +} + +###Article{ hansbo-05, + Author = {Hansbo, P.}, + Journal = {GAMM-Mitt.}, + Number = {2}, + Pages = {183--206}, + Title = {Nitsche's method for interface problems in computational + mechanics}, + Volume = {28}, + Year = {2005} +} + +@Article{ hansbo-hermansson-thomas-04, + Author = {Hansbo, P. and Hermansson, J. and Svedberg, T.}, + ISSN = {0045-7825}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Number = {39-41}, + Pages = {4195--4206}, + Title = {Nitsche's method combined with space-time finite elements + for {ALE} fluid-structure interaction problems}, + Volume = {193}, + Year = {2004} +} + +###Article{ hansbo-hermansson-thomas-04, + Author = {Hansbo, P. and Hermansson, J. and Svedberg, T.}, + ISSN = {0045-7825}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Number = {39-41}, + Pages = {4195--4206}, + Title = {Nitsche's method combined with space-time finite elements + for {ALE} fluid-structure interaction problems}, + Volume = {193}, + Year = {2004} +} + +@Article{ hansbo05, + Author = {Hansbo, P.}, + Title = {Nitsche's method for interface problems in computational + mechanics}, + Journal = {GAMM-Mitt.}, + fjournal = {GAMM-Mitteilungen}, + Volume = {28}, + Year = {2005}, + Number = {2}, + Pages = {183--206}, + ISSN = {0936-7195}, + mrclass = {65N30 (74G15 74S30)}, + mrnumber = {MR2192480 (2006j:65345)}, + mrreviewer = {Igor Bock} +} + +###Article{ hansbo05, + Author = {Hansbo, P.}, + Title = {Nitsche's method for interface problems in computational + mechanics}, + Journal = {GAMM-Mitt.}, + fjournal = {GAMM-Mitteilungen}, + Volume = {28}, + Year = {2005}, + Number = {2}, + Pages = {183--206}, + ISSN = {0936-7195}, + mrclass = {65N30 (74G15 74S30)}, + mrnumber = {MR2192480 (2006j:65345)}, + mrreviewer = {Igor Bock} +} + +@Article{ hansbohansbo02, + Author = "Hansbo, A. and Hansbo, P.", + Title = "{An unfitted finite element method, based on Nitsche's + method, for elliptic interface problems}", + Journal = cma, + Volume = "191", + Pages = "5537--5552", + Year = "2002" +} + +###Article{ hansbohansbo02, + Author = "Hansbo, A. and Hansbo, P.", + Title = "{An unfitted finite element method, based on Nitsche's + method, for elliptic interface problems}", + Journal = cma, + Volume = "191", + Pages = "5537--5552", + Year = "2002" +} + +@Article{ hansbohansbo04, + Author = "{Hansbo, A. and Hansbo, P.}", + Title = "{A finite element method for the simulation of strong and + weak discountinuities in solid mechanics}", + Journal = cma, + Volume = "193", + Pages = "3523--3540", + Year = "2004" +} + +###Article{ hansbohansbo04, + Author = "{Hansbo, A. and Hansbo, P.}", + Title = "{A finite element method for the simulation of strong and + weak discountinuities in solid mechanics}", + Journal = cma, + Volume = "193", + Pages = "3523--3540", + Year = "2004" +} + +@Article{ happel-59, + Author = {Happel, J.}, + Journal = {AIChE J.}, + Pages = {174-177}, + Title = {Viscous flow relative to arrays of cylinders}, + Volume = {5}, + Year = {1959} +} + +###Article{ happel-59, + Author = {Happel, J.}, + Journal = {AIChE J.}, + Pages = {174-177}, + Title = {Viscous flow relative to arrays of cylinders}, + Volume = {5}, + Year = {1959} +} + +@Article{ haraldsson2018ppeturb, + Title = {Assessment of Reynolds stress components and turbulent + pressure loss using 4D flow MRI with extended motion + encoding}, + Author = {Haraldsson, Henrik and Kefayati, Sarah and Ahn, Sinyeob + and Dyverfeldt, Petter and Lantz, Jonas and Karlsson, Matts + and Laub, Gerhard and Ebbers, Tino and Saloner, David}, + Journal = {Magnetic resonance in medicine}, + Volume = {79}, + Number = {4}, + Pages = {1962--1971}, + Year = {2018}, + Publisher = {Wiley Online Library} +} + +@Article{ hardman_comparison_2013, + Title = {Comparison of Patient-Specific Inlet Boundary Conditions + in the Numerical Modelling of Blood Flow in Abdominal + Aortic Aneurysm Disease}, + Volume = {29}, + Number = {2}, + JournalTitle = {International Journal for Numerical Methods in Biomedical + Engineering}, + Year = {2013}, + Pages = {165--178}, + Author = {Hardman, David and Semple, Scott I. and Richards, Jennifer + MJ and Hoskins, Peter R.} +} + +@Article{ harmer2013in, + Title = {In vivo myofibre architecture in the systemic right + ventricle.}, + Author = {Harmer, Jack and Pushparajah, Kuberan and Toussaint, + Nicolas and Stoeck, Christian T. and Chan, Rachel and + Atkinson, David and Razavi, Reza and Kozerke, Sebastian}, + Journal = {European Heart Journal}, + Year = {2013}, + Month = {Dec}, + Number = {47}, + Pages = {3640}, + Volume = {34}, + Institution = {Division of Imaging Sciences and Biomedical Engineering, + King's College London, London, UK.}, + Keywords = {Adult; Diffusion Magnetic Resonance Imaging; Humans; + Magnetic Resonance Angiography; Medical Illustration; + Transposition of Great Vessels, pathology/surgery; + Ventricular Dysfunction, Right, pathology}, + Language = {eng}, + medline-pst = {ppublish}, + owner = {andreas}, + pii = {eht442}, + pmid = {24142348}, + timestamp = {2015.06.17} +} + +@Article{ heil-04, + Author = {Heil, M.}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Number = {1-2}, + Pages = {1--23}, + Title = {An efficient solver for the fully coupled solution of + large-displacement fluid-structure interaction problems}, + Volume = {193}, + Year = {2004} +} + +###Article{ heil-04, + Author = {Heil, M.}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Number = {1-2}, + Pages = {1--23}, + Title = {An efficient solver for the fully coupled solution of + large-displacement fluid-structure interaction problems}, + Volume = {193}, + Year = {2004} +} + +@Article{ heinen_vivo_2017, + langid = {english}, + Title = {In Vivo Validation of Patient-Specific Pressure Gradient + Calculations for Iliac Artery Stenosis Severity + Assessment}, + Volume = {6}, + ISSN = {2047-9980}, + URL = {https://research.tue.nl/en/publications/in-vivo-validation-of-patient-specific-pressure-gradient-calculat}, + DOI = {10.1161/JAHA.117.007328}, + Number = {12}, + JournalTitle = {Journal of the American Heart Association}, + URLDate = {2019-02-28}, + Year = {2017-12}, + Pages = {e007328}, + Author = {Heinen, Stefan G. H. and van den Heuvel, Daniel A. F. and + Huberts, Wouter and de Boer, Sanne W. and van de Vosse, + Frans N. and Delhaas, Tammo and de Vries, Jean-Paul P. M.}, + EPrintType = {pmid}, + EPrint = {29275367} +} + +@Article{ helm-etal-05a, + Author = {Helm, P. and Beg, M. F. and Miller, M. I. and Winslow, R. + L.}, + Title = {Measuring and Mapping Cardiac Fiber and Laminar + Architecture Using Diffusion Tensor {MR} Imaging}, + Journal = {Annals of the New York Academy of Sciences}, + Volume = {1047}, + Number = {1}, + Publisher = {Blackwell Publishing Ltd}, + ISSN = {1749-6632}, + DOI = {10.1196/annals.1341.026}, + Pages = {296--307}, + Keywords = {computational modeling, fiber orientation, MRI, sheet + orientation, ventricular anatomy}, + Year = {2005} +} + +@Article{ helm-etal-05b, + Author = {Helm, P. and Tseng, H.-J. and Younes, L. and McVeigh, E. + R. and Winslow, R. L.}, + Title = {Ex vivo {3D} diffusion tensor imaging and quantification + of cardiac laminar structure}, + Journal = {Magnetic Resonance in Medicine}, + Volume = {54}, + Number = {4}, + Publisher = {Wiley Subscription Services, Inc., A Wiley Company}, + ISSN = {1522-2594}, + DOI = {10.1002/mrm.20622}, + Pages = {850--859}, + Keywords = {diffusion tensor MRI, myocardial microstructure, + anisotropic diffusion, myofiber laminar sheets, cardiac}, + Year = {2005} +} + +@Article{ helm2005mrm, + Title = {Ex vivo 3D diffusion tensor imaging and quantification of + cardiac laminar structure.}, + Author = {Helm, Patrick A. and Tseng, Hsiang-Jer and Younes, Laurent + and McVeigh, Elliot R. and Winslow, Raimond L.}, + Journal = {Magn Reson Med}, + Year = {2005}, + Month = {Oct}, + Number = {4}, + Pages = {850--859}, + Volume = {54}, + Abstract = {A three-dimensional (3D) diffusion-weighted imaging (DWI) + method for measuring cardiac fiber structure at high + spatial resolution is presented. The method was applied to + the ex vivo reconstruction of the fiber architecture of + seven canine hearts. A novel hypothesis-testing method was + developed and used to show that distinct populations of + secondary and tertiary eigenvalues may be distinguished at + reasonable confidence levels (P < or = 0.01) within the + canine ventricle. Fiber inclination and sheet angles are + reported as a function of transmural depth through the + anterior, lateral, and posterior left ventricle (LV) free + wall. Within anisotropic regions, two consistent and + dominant orientations were identified, supporting published + results from histological studies and providing strong + evidence that the tertiary eigenvector of the diffusion + tensor (DT) defines the sheet normal.}, + DOI = {10.1002/mrm.20622}, + Institution = {Center for Cardiovascular Bioinformatics and Modeling, + Johns Hopkins University, Baltimore, MD 21218, USA. + phelm@bme.jhu.edu}, + Keywords = {Algorithms; Animals; Diffusion Magnetic Resonance Imaging, + methods; Dogs; Heart Ventricles, cytology; Image + Enhancement, methods; Image Interpretation, + Computer-Assisted, methods; Imaging, Three-Dimensional, + methods; In Vitro Techniques; Information Storage and + Retrieval, methods; Male; Pattern Recognition, Automated, + methods; Reproducibility of Results; Sensitivity and + Specificity}, + Language = {eng}, + medline-pst = {ppublish}, + owner = {stoeckc}, + pmid = {16149057}, + timestamp = {2015.07.24}, + URL = {http://dx.doi.org/10.1002/mrm.20622} +} + +@Article{ helm2006evidence, + Title = {Evidence of structural remodeling in the dyssynchronous + failing heart}, + Author = {Helm, Patrick A and Younes, Laurent and Beg, Mirza F and + Ennis, Daniel B and Leclercq, Christophe and Faris, Owen P + and McVeigh, Elliot and Kass, David and Miller, Michael I + and Winslow, Raimond L}, + Journal = {Circulation Research}, + Volume = {98}, + Number = {1}, + Pages = {125--132}, + Year = {2006}, + Publisher = {Am Heart Assoc} +} + +@Article{ henzler2010ejr, + Title = {Diffusion and perfusion {MRI} of the lung and + mediastinum}, + Author = {Henzler, Thomas and Schmid-Bindert, Gerald and Schoenberg, + Stefan O and Fink, Christian}, + Journal = {European journal of radiology}, + Year = {2010}, + Number = {3}, + Pages = {329--336}, + Volume = {76}, + Publisher = {Elsevier} +} + +@Article{ herment2000mrm, + Title = {Improved estimation of velocity and flow rate using + regularized three-point phase-contrast velocimetry.}, + Author = {Herment, A. and Mousseaux, E. and Jolivet, O. and + DeCesare, A. and Frouin, F. and Todd-Pokropek, A. and + Bittoun, J.}, + Journal = {Magn Reson Med}, + Year = {2000}, + Month = {Jul}, + Number = {1}, + Pages = {122--128}, + Volume = {44}, + Abstract = {We improved the three-point phase-contrast method by + regularization of MR velocity data after acquisition of a + low velocity-to-noise ratio (VNR) velocity image and a high + VNR aliased velocity image. The phase unwrapping algorithm + is based on the assumed correlation of the velocity of + adjacent flow voxels on the low VNR and the unaliased high + VNR images. We used Fourier encoding with eight + velocity-encoding gradient steps to obtain reference + velocity images of the aorta from five subjects (274 + images) and compared them with the phase-contrast and + three-point phase-contrast images with and without + regularization. The VNR of the regularized velocity image + was improved by 9.1 dB and the VNR of the three-point + phase-contrast velocity image was improved by 0.7 dB with + respect to the low first moment velocity image. + Corresponding improvements of 9 dB and 3.7 dB were obtained + for the estimations of instantaneous flow rate. Magn Reson + Med 44:122-128, 2000.}, + Institution = {INSERM U.494 CHU Pitié, Paris, France. + herment@imed.jussieu.fr}, + Keywords = {Adult; Algorithms; Aorta, physiology; Blood Flow Velocity, + physiology; Fourier Analysis; Hemorheology; Humans; Image + Processing, Computer-Assisted; Least-Squares Analysis; + Linear Models; Magnetic Resonance Imaging, methods; Male; + Middle Aged; Phantoms, Imaging}, + Language = {eng}, + medline-pst = {ppublish}, + owner = {stoeckc}, + pii = {3.0.CO;2-C}, + pmid = {10893530}, + timestamp = {2015.07.24} +} + +@Unpublished{ heyden2015submitted, + Title = {Material modeling of cardiac valve tissue: Experiments, + constitutive analysis and numerical investigation}, + Author = {Stefanie Heyden and Andreas Nagler and Cristobal Bertoglio + and Jonas Biehler and Michael W. Gee and Wolfgang A. Wall + and Michael Ortiz}, + Note = {submitted for publication}, + Year = {2015}, + File = {heyden15.pdf:heyden15.pdf:PDF}, + owner = {pfaller}, + timestamp = {2015/09/23} +} + +@Article{ heys-etal-10, + Title = {Weighted least-squares finite elements based on particle + imaging velocimetry data}, + Author = {Heys, J.J. and Manteuffel, T.A. and McCormick, S.F. and + Milano, M. and Westerdale, J. and Belohlavek, M.}, + Journal = {Journal of Computational Physics}, + Volume = {229}, + Number = {1}, + Pages = {107--118}, + Year = {2010}, + Publisher = {Elsevier} +} + +###Article{ heys-etal-10, + Title = {Weighted least-squares finite elements based on particle + imaging velocimetry data}, + Author = {Heys, J.J. and Manteuffel, T.A. and McCormick, S.F. and + Milano, M. and Westerdale, J. and Belohlavek, M.}, + Journal = {Journal of Computational Physics}, + Volume = {229}, + Number = {1}, + Pages = {107--118}, + Year = {2010}, + Publisher = {Elsevier} +} + +@Article{ heys2010weighted, + Title = {Weighted least-squares finite elements based on particle + imaging velocimetry data}, + Author = {Heys, Jeffrey J and Manteuffel, Thomas A and McCormick, + Stephen F and Milano, M and Westerdale, John and + Belohlavek, Marek}, + Journal = {Journal of Computational Physics}, + Volume = {229}, + Number = {1}, + Pages = {107--118}, + Year = {2010}, + Publisher = {Elsevier} +} + +@Article{ heys_weighted_2010, + Title = {Weighted Least-Squares Finite Elements Based on Particle + Imaging Velocimetry Data}, + Volume = {229}, + Number = {1}, + JournalTitle = {Journal of Computational Physics}, + Year = {2010}, + Pages = {107--118}, + Author = {Heys, Jeffrey J. and Manteuffel, Thomas A. and McCormick, + Stephen F. and Milano, M. and Westerdale, John and + Belohlavek, Marek} +} + +@Article{ heywood-70, + Author = {Heywood, J.G.}, + Journal = {Arch. Rat. Mech. Anal.}, + Pages = {48-60}, + Title = {On stationary solutions of the {Navier-Stokes} equations + as limits of nonstationary solutions}, + Volume = {37}, + Year = {1970} +} + +###Article{ heywood-70, + Author = {Heywood, J.G.}, + Journal = {Arch. Rat. Mech. Anal.}, + Pages = {48-60}, + Title = {On stationary solutions of the {Navier-Stokes} equations + as limits of nonstationary solutions}, + Volume = {37}, + Year = {1970} +} + +@Article{ heywood-80, + Author = {Heywood, J.G.}, + Journal = {Indiana Univ. Math. J.}, + Number = {5}, + Pages = {639-681}, + Title = {The {Navier-Stokes} equations~: on the existence, + regularity and decay of solutions}, + Volume = {29}, + Year = {1980} +} + +###Article{ heywood-80, + Author = {Heywood, J.G.}, + Journal = {Indiana Univ. Math. J.}, + Number = {5}, + Pages = {639-681}, + Title = {The {Navier-Stokes} equations~: on the existence, + regularity and decay of solutions}, + Volume = {29}, + Year = {1980} +} + +@Article{ heywood-rannacher-turek-96, + Author = {J.G. Heywood and R. Rannacher and S. Turek}, + Journal = {International Journal for Numerical Methods in Fluids}, + Pages = {325--352}, + Title = {Artificial Boundaries and Flux and Pressure Conditions for + the Incompressible {N}avier--{S}tokes Equations}, + Volume = {22}, + Year = {1996} +} + +###Article{ heywood-rannacher-turek-96, + Author = {J.G. Heywood and R. Rannacher and S. Turek}, + Journal = {International Journal for Numerical Methods in Fluids}, + Pages = {325--352}, + Title = {Artificial Boundaries and Flux and Pressure Conditions for + the Incompressible {N}avier--{S}tokes Equations}, + Volume = {22}, + Year = {1996} +} + +@Article{ heywood_artificial_1996, + Title = {Artificial Boundaries and Flux and Pressure Conditions for + the Incompressible Navier-Stokes Equations}, + Volume = {22}, + Number = {5}, + JournalTitle = {International Journal for Numerical Methods in Fluids}, + Year = {1996}, + Pages = {325--352}, + Author = {Heywood, John G. and Rannacher, Rolf and Turek, Stefan} +} + +@Article{ hfb86, + Author = {Hughes, T.J.R. and Franca, L.P. and Balestra, M.}, + Title = {A new finite element formulation for computational fluid + dynamics. {V}. {C}ircumventing the {B}abu\v ska-{B}rezzi + condition: a stable {P}etrov-{G}alerkin formulation of the + {S}tokes problem accommodating equal-order interpolations}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Volume = {59}, + Year = {1986}, + Number = {1}, + Pages = {85--99} +} + +###Article{ hfb86, + Author = {Hughes, T.J.R. and Franca, L.P. and Balestra, M.}, + Title = {A new finite element formulation for computational fluid + dynamics. {V}. {C}ircumventing the {B}abu\v ska-{B}rezzi + condition: a stable {P}etrov-{G}alerkin formulation of the + {S}tokes problem accommodating equal-order interpolations}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Volume = {59}, + Year = {1986}, + Number = {1}, + Pages = {85--99} +} + +@Article{ hh03, + Author = {Hansbo, P. and Hermansson, J.}, + Journal = {Computational Mechanics}, + Number = {1--2}, + Pages = {134--139}, + Title = {Nitsche's method for coupling non-matching meshes in + fluid-structure vibration problems}, + Volume = {32}, + Year = {2003} +} + +###Article{ hh03, + Author = {Hansbo, P. and Hermansson, J.}, + Journal = {Computational Mechanics}, + Number = {1--2}, + Pages = {134--139}, + Title = {Nitsche's method for coupling non-matching meshes in + fluid-structure vibration problems}, + Volume = {32}, + Year = {2003} +} + +@Article{ hhs04, + Author = {Hansbo, P. and Hermansson, J. and Svedberg, T.}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Pages = {4195--4206}, + Title = {Nitsche's method combined with space-time finite elements + for {A}{L}{E} fluid-structure interaction problems}, + Volume = {193}, + Year = {2004} +} + +###Article{ hhs04, + Author = {Hansbo, P. and Hermansson, J. and Svedberg, T.}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Pages = {4195--4206}, + Title = {Nitsche's method combined with space-time finite elements + for {A}{L}{E} fluid-structure interaction problems}, + Volume = {193}, + Year = {2004} +} + +@Article{ higashitani-iimura-98, + Annote = {blood, aggregation, shear flow, elongational flow}, + Author = {Higashitani, K. and Ilmua K.}, + code = {cel3}, + Journal = {J. Colloid Interface Sci.}, + Pages = {320-327}, + Title = {Two dimensional simulation of the breakup process of + aggregates in shear and elongational flows}, + Volume = {204}, + Year = {1998} +} + +###Article{ higashitani-iimura-98, + Annote = {blood, aggregation, shear flow, elongational flow}, + Author = {Higashitani, K. and Ilmua K.}, + code = {cel3}, + Journal = {J. Colloid Interface Sci.}, + Pages = {320-327}, + Title = {Two dimensional simulation of the breakup process of + aggregates in shear and elongational flows}, + Volume = {204}, + Year = {1998} +} + +@Article{ hilhorst-van-der-hout-peletier-00, + Author = {Hilhorst, D. and van der Hout, R. and Peletier, L. A.}, + code = {por23}, + Journal = {Nonlinear Anal.}, + Number = {5-6, Ser. A: Theory Meth. Appl.}, + Pages = {803--823}, + Title = {Nonlinear diffusion in the presence of fast reaction}, + Volume = {41}, + Year = {2000} +} + +###Article{ hilhorst-van-der-hout-peletier-00, + Author = {Hilhorst, D. and van der Hout, R. and Peletier, L. A.}, + code = {por23}, + Journal = {Nonlinear Anal.}, + Number = {5-6, Ser. A: Theory Meth. Appl.}, + Pages = {803--823}, + Title = {Nonlinear diffusion in the presence of fast reaction}, + Volume = {41}, + Year = {2000} +} + +@Article{ hilhorst-van-der-hout-peletier-96, + Author = {Hilhorst, D. and van der Hout, R. and Peletier, L. A.}, + code = {por21}, + Journal = {J. Math. Anal. Appl.}, + Number = {2}, + Pages = {349--373}, + Title = {The fast reaction limit for a reaction-diffusion system}, + Volume = {199}, + Year = {1996} +} + +###Article{ hilhorst-van-der-hout-peletier-96, + Author = {Hilhorst, D. and van der Hout, R. and Peletier, L. A.}, + code = {por21}, + Journal = {J. Math. Anal. Appl.}, + Number = {2}, + Pages = {349--373}, + Title = {The fast reaction limit for a reaction-diffusion system}, + Volume = {199}, + Year = {1996} +} + +@Article{ hilhorst-van-der-hout-peletier-97, + Author = {Hilhorst, D. and van der Hout, R. and Peletier, L. A.}, + code = {por22}, + fjournal = {The University of Tokyo. Journal of Mathematical + Sciences}, + Journal = {J. Math. Sci. Univ. Tokyo}, + Number = {3}, + Pages = {469--517}, + Title = {Diffusion in the presence of fast reaction: the case of a + general monotone reaction term}, + Volume = {4}, + Year = {1997} +} + +###Article{ hilhorst-van-der-hout-peletier-97, + Author = {Hilhorst, D. and van der Hout, R. and Peletier, L. A.}, + code = {por22}, + fjournal = {The University of Tokyo. Journal of Mathematical + Sciences}, + Journal = {J. Math. Sci. Univ. Tokyo}, + Number = {3}, + Pages = {469--517}, + Title = {Diffusion in the presence of fast reaction: the case of a + general monotone reaction term}, + Volume = {4}, + Year = {1997} +} + +@Article{ hiratzka_2010_2010, + Title = {2010 + {{ACCF}}/{{AHA}}/{{AATS}}/{{ACR}}/{{ASA}}/{{SCA}}/{{SCAI}}/{{SIR}}/ + {{STS}}/{{SVM}} Guidelines for the Diagnosis and Management + of Patients with Thoracic Aortic Disease}, + Volume = {55}, + Number = {14}, + JournalTitle = {Journal of the American College of Cardiology}, + Year = {2010}, + Pages = {e27--e129}, + Author = {Hiratzka, Loren F. and Bakris, George L. and Beckman, + Joshua A. and Bersin, Robert M. and Carr, Vincent F. and + Casey, Donald E. and Eagle, Kim A. and Hermann, Luke K. and + Isselbacher, Eric M. and Kazerooni, Ella A.} +} + +@Article{ hirt-amsden-cook-74, + Author = {Hirt, C.W. and Amsden, A.A. and Cook, J.L.}, + Journal = { J. Comput. Phys.}, + Number = {3}, + Pages = {227--253}, + Title = {An arbitrary Lagrangian-Eulerian computing method for all + flow speeds}, + Volume = {14}, + Year = {1974} +} + +###Article{ hirt-amsden-cook-74, + Author = {Hirt, C.W. and Amsden, A.A. and Cook, J.L.}, + Journal = { J. Comput. Phys.}, + Number = {3}, + Pages = {227--253}, + Title = {An arbitrary Lagrangian-Eulerian computing method for all + flow speeds}, + Volume = {14}, + Year = {1974} +} + +@PhdThesis{ ho-89, + Author = {Ho, L.W.}, + code = {mob8}, + School = {Massachussets Institute of Technology}, + Title = {A legendre spectral element method for simulation of + incompressible unsteady viscous free-surface flows}, + Year = {1989} +} + +###PhdThesis{ ho-89, + Author = {Ho, L.W.}, + code = {mob8}, + School = {Massachussets Institute of Technology}, + Title = {A legendre spectral element method for simulation of + incompressible unsteady viscous free-surface flows}, + Year = {1989} +} + +@Article{ ho2006, + Title = {Anatomy, echocardiography, and normal right ventricular + dimensions}, + Author = {Ho, S.Y. and Nihoyannopoulos, P.}, + Journal = {Heart}, + Volume = {92}, + Number = {suppl 1}, + Pages = {i2--i13}, + Year = {2006}, + Publisher = {BMJ Publishing Group Ltd and British Cardiovascular + Society} +} + +@Article{ holmes-79, + Author = {Holmes, M. H.}, + Journal = {J. Differential Equations}, + Number = {3}, + Pages = {388--397}, + Title = {A spectral problem in hydroelasticity}, + Volume = {32}, + Year = {1979} +} + +###Article{ holmes-79, + Author = {Holmes, M. H.}, + Journal = {J. Differential Equations}, + Number = {3}, + Pages = {388--397}, + Title = {A spectral problem in hydroelasticity}, + Volume = {32}, + Year = {1979} +} + +@Article{ holmes2005arbe, + Title = {Structure and mechanics of healing myocardial infarcts}, + Author = {Holmes, Jeffrey W and Borg, Thomas K and Covell, James W}, + Journal = {Annual Review of Biomedical Engineering}, + Year = {2005}, + Pages = {223--253}, + Volume = {7}, + File = {:holmes05.pdf:PDF}, + Publisher = {Annual Reviews}, + timestamp = {2014/11/25} +} + +@Article{ holton_evaluation_2005, + Title = {Evaluation of In-Stent Stenosis by Magnetic Resonance + Phase-Velocity Mapping in Nickel-Titanium Stents}, + Author = {Holton, Andrea D. and Walsh, Edward G. and Brott, Brigitta + C. and Venugopalan, Ramakrishna and Hershey, Bradley and + Ito, Yasushi and Shih, Alan and Koomullil, Roy and + Anayiotos, Andreas S.}, + Year = {2005}, + Volume = {22}, + Pages = {248--257}, + Journal = {Journal of Magnetic Resonance Imaging}, + Number = {2} +} + +@Article{ holzapfel-odgen-09, + Volume = {14}, + Title = {On planar biaxial tests for anisotropic nonlinearly + elastic solids: a continuum mechanical framework }, + Author = {Holzapfel, G.A. and Ogden, R.W.}, + Year = {2009}, + Pages = {474--489}, + Journal = {Mathematics and Mechanics of Solids}, + Abstract = {The mechanical testing of anisotropic nonlinearly elastic + solids is a topic of considerable and increasing interest. + The results of such testing are important, in particular, + for the characterization of the material properties and the + development of constitutive laws that can be used for + predictive purposes. However, the literature on this topic + in the context of soft tissue biomechanics, in particular, + includes some papers that are misleading since they contain + errors and false statements. Claims that planar biaxial + testing can fully characterize the three-dimensional + anisotropic elastic properties of soft tissues are + incorrect. There is therefore a need to clarify the extent + to which biaxial testing can be used for determining the + elastic properties of these materials. In this paper this + is explained on the basis of the equations of finite + deformation transversely isotropic elasticity, and general + planar anisotropic elasticity. It is shown that it is + theoretically impossible to fully characterize the + properties of anisotropic elastic materials using such + tests unless some assumption is made that enables a + suitable subclass of models to be preselected. Moreover, it + is shown that certain assumptions underlying the analysis + of planar biaxial tests are inconsistent with the classical + linear theory of orthotropic elasticity. Possible sets of + independent tests required for full material + characterization are then enumerated.} +} + +###Article{ holzapfel-odgen-09, + Volume = {14}, + Title = {On planar biaxial tests for anisotropic nonlinearly + elastic solids: a continuum mechanical framework }, + Author = {Holzapfel, G.A. and Ogden, R.W.}, + Year = {2009}, + Pages = {474--489}, + Journal = {Mathematics and Mechanics of Solids}, + URL = {http://eprints.gla.ac.uk/25269/}, + Abstract = {The mechanical testing of anisotropic nonlinearly elastic + solids is a topic of considerable and increasing interest. + The results of such testing are important, in particular, + for the characterization of the material properties and the + development of constitutive laws that can be used for + predictive purposes. However, the literature on this topic + in the context of soft tissue biomechanics, in particular, + includes some papers that are misleading since they contain + errors and false statements. Claims that planar biaxial + testing can fully characterize the three-dimensional + anisotropic elastic properties of soft tissues are + incorrect. There is therefore a need to clarify the extent + to which biaxial testing can be used for determining the + elastic properties of these materials. In this paper this + is explained on the basis of the equations of finite + deformation transversely isotropic elasticity, and general + planar anisotropic elasticity. It is shown that it is + theoretically impossible to fully characterize the + properties of anisotropic elastic materials using such + tests unless some assumption is made that enables a + suitable subclass of models to be preselected. Moreover, it + is shown that certain assumptions underlying the analysis + of planar biaxial tests are inconsistent with the classical + linear theory of orthotropic elasticity. Possible sets of + independent tests required for full material + characterization are then enumerated.} +} + +@Article{ holzapfel-odgen-review2010, + Author = {Holzapfel, G.A. and Ogden, R.W.}, + Title = {Constitutive modelling of arteries}, + Year = {2010}, + DOI = {10.1098/rspa.2010.0058}, + Journal = {Proceedings of the Royal Society A: Mathematical, Physical + and Engineering Science} +} + +###Article{ holzapfel-odgen-review2010, + Author = {Holzapfel, G.A. and Ogden, R.W.}, + Title = {Constitutive modelling of arteries}, + Year = {2010}, + DOI = {10.1098/rspa.2010.0058}, + URL = {http://rspa.royalsocietypublishing.org/content/early/2010/03/26/rspa.2010.0058.abstract}, + EPrint = {http://rspa.royalsocietypublishing.org/content/early/2010/03/26/rspa.2010.0058.full.pdf+html}, + Journal = {Proceedings of the Royal Society A: Mathematical, Physical + and Engineering Science} +} + +@Article{ holzapfel2000arteries, + Title = {A new constitutive framework for arterial wall mechanics + and a comparative study of material models}, + Author = {Holzapfel, Gerhard A and Gasser, Thomas C and Ogden, Ray + W}, + Journal = {Journal of elasticity and the physical science of solids}, + Volume = {61}, + Number = {1-3}, + Pages = {1--48}, + Year = {2000}, + Publisher = {Springer} +} + +@Book{ holzapfel2001, + Author = {Holzapfel, Gerhard A.}, + Publisher = {John Wiley \& Sons Ltd.}, + Title = {{Nonlinear Solid Mechanics: A Continuum Approach for + Engineering}}, + Year = {2000} +} + +@Article{ holzapfel2009ptrs, + Title = {Constitutive modelling of passive myocardium: a + structurally based framework for material + characterization}, + Author = {Holzapfel, Gerhard A and Ogden, Ray W}, + Journal = {Philosophical Transactions of the Royal Society of London + A: Mathematical, Physical and Engineering Sciences}, + Volume = {367}, + Number = {1902}, + Pages = {3445--3475}, + Year = {2009}, + Publisher = {The Royal Society} +} + +@Article{ holzapfel2009royal, + Title = {Constitutive modelling of passive myocardium: a + structurally based framework for material + characterization}, + Author = {Holzapfel, Gerhard A and Ogden, Ray W}, + Journal = {Philosophical Transactions of the Royal Society A: + Mathematical, Physical and Engineering Sciences}, + Year = {2009}, + Number = {1902}, + Pages = {3445--3475}, + Volume = {367}, + File = {:holzapfel09.pdf:PDF}, + Publisher = {The Royal Society}, + timestamp = {2014/12/08} +} + +@Article{ holzapfel_gasser_ogden_2000, + Title = {A New Constitutive Framework for Arterial Wall Mechanics + and a Comparative Study of Material Models}, + Volume = {61}, + Publisher = {Springer}, + Author = {Holzapfel, G. and Gasser, T. and Ogden, R.}, + Year = {2000}, + Pages = {1--48} +} + +@Article{ hom_velocity-encoded_2008, + Title = {Velocity-Encoded Cine {{MR}} Imaging in Aortic + Coarctation: Functional Assessment of Hemodynamic Events}, + Volume = {28}, + ShortTitle = {Velocity-Encoded Cine {{MR}} Imaging in Aortic + Coarctation}, + Number = {2}, + JournalTitle = {Radiographics}, + Year = {2008}, + Pages = {407--416}, + Author = {Hom, Jeffrey J. and Ordovas, Karen and Reddy, Gautham P.} +} + +@Article{ hope_comparison_2007, + Title = {Comparison of Flow Patterns in Ascending Aortic Aneurysms + and Volunteers Using Four-Dimensional Magnetic Resonance + Velocity Mapping}, + Volume = {26}, + Number = {6}, + JournalTitle = {Journal of Magnetic Resonance Imaging: An Official Journal + of the International Society for Magnetic Resonance in + Medicine}, + Year = {2007}, + Pages = {1471--1479}, + Author = {Hope, Thomas A. and Markl, Michael and Wigström, Lars and + Alley, Marcus T. and Miller, D. Craig and Herfkens, Robert + J.} +} + +@Book{ hornung-97, + Address = {New York}, + Editor = {Hornung, Ulrich}, + ISBN = {0-387-94786-8}, + Pages = {xvi+275}, + Publisher = {Springer-Verlag}, + Title = {Homogenization and porous media}, + Year = {1997} +} + +###Book{ hornung-97, + Address = {New York}, + Editor = {Hornung, Ulrich}, + ISBN = {0-387-94786-8}, + Pages = {xvi+275}, + Publisher = {Springer-Verlag}, + Title = {Homogenization and porous media}, + Year = {1997} +} + +@Article{ horny-etal-07, + Author = {Horn\'y, L. and Zitn\'y, R. and Chlup, H. and Mackov\'a, H.}, + Title = {Identification of the material parameters of an aortic + wall}, + Journal = {Bulletin of Applied Mechanics}, + Volume = {2}, + Number = {8}, + Year = {2007}, + Keywords = {Aorta; constitutive modeling; Fung-type model; inflation + test; hyperelasticity; Neo-Hookean model}, + Abstract = {The passive mechanical response of arterial walls + continues to be a topic of great interest. Inflation tests + with human thoracic aorta specimens were performed with the + aim of fitting a material model. The experimental data was + used in a nonlinear regression analysis to identify the + material parameters. The aortic tissue was assumed to be an + incompressible hyperelastic material. We used a + 5–parameter strain energy density function based on a + combination of an isotropic Neo–Hookean expression and a + Fung–type orthotropic expression. The computational model + for identifying the material parameters was based on the + boundary value problem of an inflated thick–walled tube + with axial pre–strains. The circumferential residual + strains were included. The internal structure of the + arterial walls was not considered. The fitted material + models correspond very well with the experimental data. + Significant stiffening under large strains was observed. It + was concluded that the combined model of the strain energy + density function is suitable for the aortic mechanical + response description. The material parameters satisfy the + convexity conditions.}, + ISSN = {1801-1217} +} + +###Article{ horny-etal-07, + Author = {Horn\'y, L. and Zitn\'y, R. and Chlup, H. and Mackov\'a, H.}, + Title = {Identification of the material parameters of an aortic + wall}, + Journal = {Bulletin of Applied Mechanics}, + Volume = {2}, + Number = {8}, + Year = {2007}, + Keywords = {Aorta; constitutive modeling; Fung-type model; inflation + test; hyperelasticity; Neo-Hookean model}, + Abstract = {The passive mechanical response of arterial walls + continues to be a topic of great interest. Inflation tests + with human thoracic aorta specimens were performed with the + aim of fitting a material model. The experimental data was + used in a nonlinear regression analysis to identify the + material parameters. The aortic tissue was assumed to be an + incompressible hyperelastic material. We used a + 5–parameter strain energy density function based on a + combination of an isotropic Neo–Hookean expression and a + Fung–type orthotropic expression. The computational model + for identifying the material parameters was based on the + boundary value problem of an inflated thick–walled tube + with axial pre–strains. The circumferential residual + strains were included. The internal structure of the + arterial walls was not considered. The fitted material + models correspond very well with the experimental data. + Significant stiffening under large strains was observed. It + was concluded that the combined model of the strain energy + density function is suitable for the aortic mechanical + response description. The material parameters satisfy the + convexity conditions.}, + ISSN = {1801-1217}, + URL = {http://bulletin-am.cz/index.php/vam/article/view/43/59} +} + +@Article{ hoskins_accuracy_1996, + Title = {Accuracy of Maximum Velocity Estimates Made Using + {{Doppler}} Ultrasound Systems}, + Author = {Hoskins, P. R.}, + Year = {1996}, + Volume = {69}, + Pages = {172--177}, + Journal = {The British journal of radiology}, + Number = {818} +} + +@Article{ hoteit-pham-blum-02, + Author = {Hoteit, I. and Pham, D.-T. and Blum, J.}, + date-added = {2009-03-10 11:40:58 -0700}, + date-modified = {2009-03-10 12:02:17 -0700}, + DOI = {DOI: 10.1016/S0924-7963(02)00129-X}, + ISSN = {0924-7963}, + Journal = {Journal of Marine Systems}, + Number = {1--2}, + Pages = {101--127}, + Title = {A simplified reduced order {K}alman filtering and + application to altimetric data assimilation in {T}ropical + {P}acific}, + Volume = {36}, + Year = {2002} +} + +###Article{ hoteit-pham-blum-02, + Author = {Hoteit, I. and Pham, D.-T. and Blum, J.}, + date-added = {2009-03-10 11:40:58 -0700}, + date-modified = {2009-03-10 12:02:17 -0700}, + DOI = {DOI: 10.1016/S0924-7963(02)00129-X}, + ISSN = {0924-7963}, + Journal = {Journal of Marine Systems}, + Number = {1--2}, + Pages = {101--127}, + Title = {A simplified reduced order {K}alman filtering and + application to altimetric data assimilation in {T}ropical + {P}acific}, + Volume = {36}, + Year = {2002}, + bdsk-url-1 = {http://www.sciencedirect.com/science/article/B6VF5-45YG6V2-1/2/36766af659cf7e84807f5e812a2bc4fb}, + bdsk-url-2 = {http://dx.doi.org/10.1016/S0924-7963(02)00129-X} +} + +@Article{ hou-meir-95, + Annote = {mhd, optimal control}, + Author = {Hou, L. S. and Meir, A. J.}, + code = {mhd7}, + Journal = {App. Math. Optim.}, + Pages = {143-162}, + Title = {Boundary optimal control of {MHD} flows}, + Volume = {32}, + Year = {1995} +} + +###Article{ hou-meir-95, + Annote = {mhd, optimal control}, + Author = {Hou, L. S. and Meir, A. J.}, + code = {mhd7}, + Journal = {App. Math. Optim.}, + Pages = {143-162}, + Title = {Boundary optimal control of {MHD} flows}, + Volume = {32}, + Year = {1995} +} + +@Article{ hou-teng-zhang-96, + Author = {Hou, T.Y and Teng, Z.-H. and Zhang, P.}, + Journal = {Comm. Part. Diff. Eq.}, + Number = {9-10}, + Pages = {1551-1585}, + Title = {Well-posedness of linearized motion for {3-D} water waves + far from equilibrium}, + Volume = {21}, + Year = {1996} +} + +###Article{ hou-teng-zhang-96, + Author = {Hou, T.Y and Teng, Z.-H. and Zhang, P.}, + Journal = {Comm. Part. Diff. Eq.}, + Number = {9-10}, + Pages = {1551-1585}, + Title = {Well-posedness of linearized motion for {3-D} water waves + far from equilibrium}, + Volume = {21}, + Year = {1996} +} + +@Article{ howells-74, + Annote = {darcy, brinkman}, + Author = {Howells, I.D.}, + code = {cel15}, + Journal = {J. Fluid Mech. }, + Pages = {449-475}, + Title = {Drag due to the motion of a Newtonian fluid through a + sparse random array of small fixed rigid objects}, + Volume = {64}, + Year = {1974} +} + +###Article{ howells-74, + Annote = {darcy, brinkman}, + Author = {Howells, I.D.}, + code = {cel15}, + Journal = {J. Fluid Mech. }, + Pages = {449-475}, + Title = {Drag due to the motion of a Newtonian fluid through a + sparse random array of small fixed rigid objects}, + Volume = {64}, + Year = {1974} +} + +@Article{ howells-98, + Annote = {darcy, fibrous}, + Author = {Howells, I. D.}, + code = {por4}, + Journal = {J. Fluid Mech.}, + Pages = {163-192}, + Title = {Drag on fixed beds of fibres in slow flow}, + Volume = {355}, + Year = {1998} +} + +###Article{ howells-98, + Annote = {darcy, fibrous}, + Author = {Howells, I. D.}, + code = {por4}, + Journal = {J. Fluid Mech.}, + Pages = {163-192}, + Title = {Drag on fixed beds of fibres in slow flow}, + Volume = {355}, + Year = {1998} +} + +@Article{ hsu1998, + Author = {Hsu, E. W. and Muzikant, A. L. and Matulevicius, S. A. and + Penland, R. C. and Henriquez, C. S.}, + Title = {Magnetic resonance myocardial fiber-orientation mapping + with direct histological correlation}, + Volume = {274}, + Number = {5}, + Pages = {H1627-H1634}, + Year = {1998}, + Abstract = {Functional properties of the myocardium are mediated by + the tissue structure. Consequently, proper physiological + studies and modeling necessitate a precise knowledge of the + fiber orientation. Magnetic resonance (MR) diffusion tensor + imaging techniques have been used as a nondestructive means + to characterize tissue fiber structure; however, the + descriptions so far have been mostly qualitative. This + study presents a direct, quantitative comparison of + high-resolution MR fiber mapping and histology measurements + in a block of excised canine myocardium. Results show an + excellent correspondence of the measured fiber angles not + only on a point-by-point basis (average difference of + −2.30 ± 0.98°, n = 239) but also in the transmural + rotation of the helix angles (average correlation + coefficient of 0.942 ± 0.008 with average false-positive + probability of 0.004 ± 0.001, n = 24). These data strongly + support the hypothesis that the eigenvector of the largest + MR diffusion tensor eigenvalue coincides with the + orientation of the local myocardial fibers and underscore + the potential of MR imaging as a noninvasive, + three-dimensional modality to characterize tissue fiber + architecture.}, + Journal = {American Journal of Physiology - Heart and Circulatory + Physiology} +} + +@Article{ hu_efficient_2013, + Title = {Efficient preloading of the ventricles by a properly timed + atrial contraction underlies stroke work improvement in the + acute response to cardiac resynchronization therapy}, + Author = {Hu, Y. and Gurev, V. and Constantino, J. and Trayanova, + N.}, + Journal = {Heart Rhythm}, + Year = {2013}, + Month = dec, + Number = {12}, + Pages = {1800--1806}, + Volume = {10}, + DOI = {10.1016/j.hrthm.2013.08.003}, + File = {Unanz.pdf:/home/hoermann/.zotero/zotero/krpbc0h6.default/zotero/storage/AUUAPKQ7/Unanz.pdf:application/pdf}, + ISSN = {15475271}, + Language = {en}, + URL = {http://linkinghub.elsevier.com/retrieve/pii/S1547527113008412}, + URLDate = {2014-11-28} +} + +@Article{ hu_optimizing_2014, + Title = {Optimizing cardiac resynchronization therapy to minimize + {ATP} consumption heterogeneity throughout the left + ventricle: A simulation analysis using a canine heart + failure model}, + Author = {Hu, Y. and Gurev, V. and Constantino, J. and Trayanova, + N.}, + Journal = {Heart Rhythm}, + Year = {2014}, + Month = jun, + Number = {6}, + Pages = {1063--1069}, + Volume = {11}, + DOI = {10.1016/j.hrthm.2014.03.021}, + File = {Zwoa.pdf:/home/hoermann/.zotero/zotero/krpbc0h6.default/zotero/storage/9CJ7B9CK/Zwoa.pdf:application/pdf}, + ISSN = {15475271}, + Language = {en}, + ShortTitle = {Optimizing cardiac resynchronization therapy to minimize + {ATP} consumption heterogeneity throughout the left + ventricle}, + URL = {http://linkinghub.elsevier.com/retrieve/pii/S1547527114003026}, + URLDate = {2014-11-28} +} + +@Article{ huang-hellums-93, + Annote = {blood, aggregation, platelet}, + Author = {Huang, P.Y. and Hellums, J.D.}, + code = {cel20}, + Journal = {Biophys. J.}, + Pages = {334-343}, + Title = {Aggregation and disaggregation kinetics of human blood + platelets: {Part I.} Development and validation of a + population balance method}, + Volume = {65}, + Year = {1993} +} + +###Article{ huang-hellums-93, + Annote = {blood, aggregation, platelet}, + Author = {Huang, P.Y. and Hellums, J.D.}, + code = {cel20}, + Journal = {Biophys. J.}, + Pages = {334-343}, + Title = {Aggregation and disaggregation kinetics of human blood + platelets: {Part I.} Development and validation of a + population balance method}, + Volume = {65}, + Year = {1993} +} + +@Article{ huang-hellums-93b, + Annote = {blood, aggregation, platelet}, + Author = {Huang, P.Y. and Hellums, J.D.}, + Journal = {Biophys. J.}, + Pages = {344-353}, + Title = {Aggregation and disaggregation kinetics of human blood + platelets: {Part II.} Shear-induced platelet aggregation}, + Volume = {65}, + Year = {1993} +} + +###Article{ huang-hellums-93b, + Annote = {blood, aggregation, platelet}, + Author = {Huang, P.Y. and Hellums, J.D.}, + Journal = {Biophys. J.}, + Pages = {344-353}, + Title = {Aggregation and disaggregation kinetics of human blood + platelets: {Part II.} Shear-induced platelet aggregation}, + Volume = {65}, + Year = {1993} +} + +@Article{ huang-hellums-93c, + Annote = {blood, aggregation, platelet}, + Author = {Huang, P.Y. and Hellums, J.D.}, + Journal = {Biophys. J.}, + Pages = {354-361}, + Title = {Aggregation and disaggregation kinetics of human blood + platelets: {Part III.} the disaggregation under shear + stress of platelet aggregates}, + Volume = {65}, + Year = {1993} +} + +###Article{ huang-hellums-93c, + Annote = {blood, aggregation, platelet}, + Author = {Huang, P.Y. and Hellums, J.D.}, + Journal = {Biophys. J.}, + Pages = {354-361}, + Title = {Aggregation and disaggregation kinetics of human blood + platelets: {Part III.} the disaggregation under shear + stress of platelet aggregates}, + Volume = {65}, + Year = {1993} +} + +@Article{ huerta-liu-88, + Author = {Huerta, A. and Liu, W. K.}, + code = {mob1}, + Journal = {Comp. Meth. Appl. Mech. Engng.}, + Pages = {277-324}, + Title = {Viscous flow with large surface motion}, + Volume = {69}, + Year = {1988} +} + +###Article{ huerta-liu-88, + Author = {Huerta, A. and Liu, W. K.}, + code = {mob1}, + Journal = {Comp. Meth. Appl. Mech. Engng.}, + Pages = {277-324}, + Title = {Viscous flow with large surface motion}, + Volume = {69}, + Year = {1988} +} + +@Article{ hughes-franca-balestra-86, + Author = {Hughes, T.J.R. and Franca, L.P. and Balestra, M.}, + Journal = {Comp. Meth. App. Mech. Eng.}, + Pages = {85-99}, + Title = {A new finite element formulation for computational fluid + dynamics~: V. Circumventing the {Babuska-Brezzi} + condition~: a stable {Petrov-Galerkin} formulation of the + {Stokes} problem accommodating equal-order interpolations}, + Volume = {59}, + Year = {1986} +} + +###Article{ hughes-franca-balestra-86, + Author = {Hughes, T.J.R. and Franca, L.P. and Balestra, M.}, + Journal = {Comp. Meth. App. Mech. Eng.}, + Pages = {85-99}, + Title = {A new finite element formulation for computational fluid + dynamics~: V. Circumventing the {Babuska-Brezzi} + condition~: a stable {Petrov-Galerkin} formulation of the + {Stokes} problem accommodating equal-order interpolations}, + Volume = {59}, + Year = {1986} +} + +@Article{ hughes-mallet-mizukami-86, + Author = {Hughes, T.J.R. and Mallet, M. and Mizukami, A.}, + Journal = {Comp. Meth. App. Mech. Eng.}, + Pages = {341-355}, + Title = {A new finite element formulation for computational fluid + dynamics: {II.} Beyond {SUPG}}, + Volume = {54}, + Year = {1986} +} + +###Article{ hughes-mallet-mizukami-86, + Author = {Hughes, T.J.R. and Mallet, M. and Mizukami, A.}, + Journal = {Comp. Meth. App. Mech. Eng.}, + Pages = {341-355}, + Title = {A new finite element formulation for computational fluid + dynamics: {II.} Beyond {SUPG}}, + Volume = {54}, + Year = {1986} +} + +@Book{ hughes-young-66, + Author = {Hughes, W.F. and Young, F.J.}, + Publisher = {Wiley}, + Title = {The electromagnetodynamics of fluids}, + Year = {1966} +} + +###Book{ hughes-young-66, + Author = {Hughes, W.F. and Young, F.J.}, + Publisher = {Wiley}, + Title = {The electromagnetodynamics of fluids}, + Year = {1966} +} + +@Book{ humphrey-02, + Title = {Cardiovascular solid mechanics: cells, tissues, and + organs}, + Author = {Humphrey, J.D.}, + ISBN = {9780387951683}, + lccn = {00069244}, + Year = {2002}, + Publisher = {Springer} +} + +###Book{ humphrey-02, + Title = {Cardiovascular solid mechanics: cells, tissues, and + organs}, + Author = {Humphrey, J.D.}, + ISBN = {9780387951683}, + lccn = {00069244}, + Year = {2002}, + Publisher = {Springer} +} + +@Article{ humphrey2002mmmas, + Title = {A constrained mixture model for growth and remodeling of + soft tissues}, + Author = {Humphrey, JD and Rajagopal, KR}, + Journal = {Mathematical models and methods in applied sciences}, + Year = {2002}, + Number = {03}, + Pages = {407--430}, + Volume = {12}, + File = {:humphrey02.pdf:PDF}, + Publisher = {World Scientific}, + timestamp = {2014/12/02} +} + +@Article{ humphrey2003prsl, + Title = {Review Paper: Continuum biomechanics of soft biological + tissues}, + Author = {Humphrey, JD}, + Journal = {Proceedings of the Royal Society of London. Series A: + Mathematical, Physical and Engineering Sciences}, + Year = {2003}, + Number = {2029}, + Pages = {3--46}, + Volume = {459}, + File = {:humphrey03.pdf:PDF}, + Keywords = {soft tissues}, + Publisher = {The Royal Society}, + timestamp = {2014/12/02} +} + +@Article{ hunt2005circ, + Title = {ACC/AHA 2005 Guideline Update for the Diagnosis and + Management of Chronic Heart Failure in the Adult: A Report + of the American College of Cardiology/American Heart + Association Task Force on Practice Guidelines (Writing + Committee to Update the 2001 Guidelines for the Evaluation + and Management of Heart Failure): Developed in + Collaboration With the American College of Chest Physicians + and the International Society for Heart and Lung + Transplantation: Endorsed by the Heart Rhythm Society}, + Author = {Hunt, Sharon Ann and Abraham, William T. and Chin, + Marshall H. and Feldman, Arthur M. and Francis, Gary S. and + Ganiats, Theodore G. and Jessup, Mariell and Konstam, + Marvin A. and Mancini, Donna M. and Michl, Keith and Oates, + John A. and Rahko, Peter S. and Silver, Marc A. and + Stevenson, Lynne Warner and Yancy, Clyde W. and Antman, + Elliott M. and Smith, Sidney C. and Adams, Cynthia D. and + Anderson, Jeffrey L. and Faxon, David P. and Fuster, + Valentin and Halperin, Jonathan L. and Hiratzka, Loren F. + and Hunt, Sharon Ann and Jacobs, Alice K. and Nishimura, + Rick and Ornato, Joseph P. and Page, Richard L. and Riegel, + Barbara}, + Journal = {Circulation}, + Year = {2005}, + Number = {12}, + Pages = {e154-e235}, + Volume = {112}, + DOI = {10.1161/CIRCULATIONAHA.105.167586}, + EPrint = {http://circ.ahajournals.org/content/112/12/e154.full.pdf+html}, + File = {hunt05.pdf:hunt05.pdf:PDF}, + timestamp = {2015/09/13}, + URL = {http://circ.ahajournals.org/content/112/12/e154.short} +} + +@Article{ hutchins-71, + Author = "Hutchins, G.", + Title = "{Coarctation of the Aorta Explained as a Branch-Point of + the Ductus Arteriosus}", + Journal = "American Journal of Pathology", + Volume = "63", + Pages = "203-214", + Number = "2", + Year = "1971" +} + +###Article{ hutchins-71, + Author = "Hutchins, G.", + Title = "{Coarctation of the Aorta Explained as a Branch-Point of + the Ductus Arteriosus}", + Journal = "American Journal of Pathology", + Volume = "63", + Pages = "203-214", + Number = "2", + Year = "1971" +} + +@Article{ hutchins1978ajc, + Title = {Infarct expansion versus extension: Two different + complications of acute myocardial infarction }, + Author = {Grover M. Hutchins and Bernadine H. Bulkley}, + Journal = {The American Journal of Cardiology }, + Year = {1978}, + Number = {7}, + Pages = {1127 - 1132}, + Volume = {41}, + Abstract = {Precordial S-T segment mapping studies have suggested that + extension of acute transmural myocardial infarcts occurs in + up to 80 percent of patients within 6 days. To determine + the morphologic nature of extension 76 consecutive acute + myocardial infarcts aged 30 days or less were studied. All + infarcts had been clinically diagnosed and proved at + autopsy. Extension (histologically more recent foci of + contraction band necrosis around an infarct) was found in + only 13 infarcts (17 percent). However, ?expansion? (acute + dilatation and thinning of the area of infarction not + explained by additional myocardial necrosis) was present in + 45 infarcts (59 percent). Severe expansion did not develop + until 5 days after infarction and was greater with + transmural and first infarcts. Clinically diagnosed + extension manifested by new pain, S-T segment elevation, + rise in serum creatine kinase level and increased + congestive heart failure occurred in 14 of the 76 patients + (18 percent). At autopsy these clinical extensions were + associated with expansion alone in three patients, with + extension alone in two and with both in nine. The study + shows that expansion is a common complication of acute + myocardial infarction that can worsen cardiac function + through left ventricular dilatation and can mimic or + possibly cause infarct extension. In contrast, extension + with additional myocardial necrosis is an infrequent + accompaniment of acute myocardial infarction and is usually + a result of hypoperfusion. }, + DOI = {http://dx.doi.org/10.1016/0002-9149(78)90869-X}, + File = {hutchins78.pdf:hutchins78.pdf:PDF}, + ISSN = {0002-9149}, + timestamp = {2015/09/14}, + URL = {http://www.sciencedirect.com/science/article/pii/000291497890869X} +} + +@Article{ huyghe-arts-van-campen-92, + Author = {Huyghe, J.M. and Arts, T. and van Campen, D.H.}, + Journal = {Am. J. Physiol.}, + Title = {Porous medium finite element model of the beating left + ventricle}, + Volume = {262}, + Year = {1992} +} + +###Article{ huyghe-arts-van-campen-92, + Author = {Huyghe, J.M. and Arts, T. and van Campen, D.H.}, + Journal = {Am. J. Physiol.}, + Title = {Porous medium finite element model of the beating left + ventricle}, + Volume = {262}, + Year = {1992} +} + +@Article{ hyriacou1999ieemedim, + Title = {Nonlinear elastic registration of brain images with tumor + pathology using a biomechanical model [MRI]}, + Author = {Kyriacou, Stelios K and Davatzikos, Christos and Zinreich, + S James and Bryan, R Nick}, + Journal = {Medical Imaging, IEEE Transactions on}, + Year = {1999}, + Number = {7}, + Pages = {580--592}, + Volume = {18}, + File = {kyriacou99.pdf:kyriacou99.pdf:PDF}, + Keywords = {tumor}, + Publisher = {IEEE}, + timestamp = {2015/03/27} +} + +@Article{ ii_physically_2018, + langid = {english}, + Title = {Physically Consistent Data Assimilation Method Based on + Feedback Control for Patient-Specific Blood Flow Analysis}, + Volume = {34}, + ISSN = {2040-7947}, + URL = {https://onlinelibrary.wiley.com/doi/abs/10.1002/cnm.2910}, + DOI = {10.1002/cnm.2910}, + Abstract = {This paper presents a novel data assimilation method for + patient-specific blood flow analysis based on feedback + control theory called the physically consistent feedback + control-based data assimilation (PFC-DA) method. In the + PFC-DA method, the signal, which is the residual error term + of the velocity when comparing the numerical and reference + measurement data, is cast as a source term in a Poisson + equation for the scalar potential field that induces flow + in a closed system. The pressure values at the inlet and + outlet boundaries are recursively calculated by this scalar + potential field. Hence, the flow field is physically + consistent because it is driven by the calculated inlet and + outlet pressures, without any artificial body forces. As + compared with existing variational approaches, although + this PFC-DA method does not guarantee the optimal solution, + only one additional Poisson equation for the scalar + potential field is required, providing a remarkable + improvement for such a small additional computational cost + at every iteration. Through numerical examples for 2D and + 3D exact flow fields, with both noise-free and noisy + reference data as well as a blood flow analysis on a + cerebral aneurysm using actual patient data, the robustness + and accuracy of this approach is shown. Moreover, the + feasibility of a patient-specific practical blood flow + analysis is demonstrated.}, + Number = {1}, + JournalTitle = {International Journal for Numerical Methods in Biomedical + Engineering}, + URLDate = {2019-02-28}, + Year = {2018}, + Pages = {e2910}, + Author = {Ii, Satoshi and Adib, Mohd Azrul Hisham Mohd and Watanabe, + Yoshiyuki and Wada, Shigeo} +} + +@Article{ imagawa-hayase-08-eigenvalue, + Title = {Eigenvalue Analysis for Error Dynamics of Measurement + Integrated Simulation to Reproduce Real Flows}, + Author = {Imagawa, K. and Hayase, T.}, + Journal = {Bulletin of the American Physical Society}, + Volume = {53}, + Year = {2008}, + Publisher = {APS} +} + +###Article{ imagawa-hayase-08-eigenvalue, + Title = {Eigenvalue Analysis for Error Dynamics of Measurement + Integrated Simulation to Reproduce Real Flows}, + Author = {Imagawa, K. and Hayase, T.}, + Journal = {Bulletin of the American Physical Society}, + Volume = {53}, + Year = {2008}, + Publisher = {APS} +} + +@InCollection{ imperiale2013lncs, + Title = {Improving efficiency of data assimilation procedure for a + biomechanical heart model by representing surfaces as + currents}, + Author = {Imperiale, Alexandre and Routier, Alexandre and Durrleman, + Stanley and Moireau, Philippe}, + BookTitle = {Functional Imaging and Modeling of the Heart}, + Pages = {342--351}, + Year = {2013}, + Publisher = {Springer} +} + +@Unpublished{ incidence, + Author = {http://www.nlm.nih.gov/medlineplus}, + Title = {A service of the {U.S. National Library of medicine and + the National Institutes of Health and the National + Institutes of Health.}} +} + +###Unpublished{ incidence, + Author = {http://www.nlm.nih.gov/medlineplus}, + Title = {A service of the {U.S. National Library of medicine and + the National Institutes of Health and the National + Institutes of Health.}} +} + +@Article{ ingkanisorn2004jacc, + Title = {Gadolinium delayed enhancement cardiovascular magnetic + resonance correlates with clinical measures of myocardial + infarction.}, + Author = {Ingkanisorn, W Patricia and Rhoads, Kenneth L. and + Aletras, Anthony H. and Kellman, Peter and Arai, Andrew + E.}, + Journal = {J Am Coll Cardiol}, + Year = {2004}, + Month = {Jun}, + Number = {12}, + Pages = {2253--2259}, + Volume = {43}, + Abstract = {The current study tested the hypothesis that gadolinium + delayed enhancement assessment of infarct size correlates + with clinical indices of myocardial infarction (MI) in + humans. Acute infarct mass by cardiac magnetic resonance + (CMR) was compared with peak troponin I, acute and chronic + left ventricular (LV) systolic function, and chronic + infarct mass in patients imaged after recent acute + MI.Cardiac magnetic resonance accurately determines + myocardial viability in patients with chronic ischemic + heart disease but is not well validated for recent + MI.Patients with first acute MI (n = 33) or chronic MI (n = + 10) underwent cine CMR followed by gadolinium delayed + enhancement imaging. A follow-up CMR scan was performed on + 20 of the 33 acute MI patients and all of the chronic MI + patients.In patients with acute percutaneous coronary + intervention, acute MI mass correlated with peak troponin I + (r = 0.83, p < 0.001, n = 23). In the 20 acute infarct + patients with follow-up CMR scans, the acute infarct size + correlated well with the follow-up LV ejection fraction (r + = 0.86, p < 0.001). The transmural extent of delayed + enhancement imaged acutely correlated inversely with wall + thickening measured acutely (p < 0.001) and at follow-up (p + < 0.001). Although chronic infarct size was reproducible + (11 +/- 4\% vs. 12 +/- 7\%, p = NS), acute infarct size + decreased from 16 +/- 12\% to 11 +/- 9\% (p < 0.003).In + humans imaged shortly after acute MI, gadolinium delayed + enhancement acute CMR infarct size correlates with acute + and chronic indices of infarct size but will appear to + diminish in size on follow-up.}, + DOI = {10.1016/j.jacc.2004.02.046}, + Institution = {National Heart, Lung, and Blood Institute, National + Institutes of Health, Department of Health and Human + Services, Bethesda, Maryland 20892-1061, USA.}, + Keywords = {Aged; Biological Markers, blood; Contrast Media; Female; + Follow-Up Studies; Gadolinium DTPA, diagnostic use; Humans; + Magnetic Resonance Imaging, Cine; Male; Middle Aged; + Myocardial Contraction, physiology; Myocardial Infarction, + blood/physiopathology/radiography; Predictive Value of + Tests; Radiographic Image Enhancement; Reproducibility of + Results; Statistics as Topic; Stroke Volume, physiology; + Troponin I, blood}, + Language = {eng}, + medline-pst = {ppublish}, + owner = {stoeckc}, + pii = {S0735109704005923}, + pmid = {15193689}, + timestamp = {2015.07.24}, + URL = {http://dx.doi.org/10.1016/j.jacc.2004.02.046} +} + +@Article{ irons-tuck-69, + Author = {Irons, B. and Tuck, R.C.}, + Journal = {Int. J. Num. Meth. Engng.}, + Pages = {275-277}, + Title = {A version of the Aitken accelerator for computer + implementation}, + Volume = {1}, + Year = {1969} +} + +###Article{ irons-tuck-69, + Author = {Irons, B. and Tuck, R.C.}, + Journal = {Int. J. Num. Meth. Engng.}, + Pages = {275-277}, + Title = {A version of the Aitken accelerator for computer + implementation}, + Volume = {1}, + Year = {1969} +} + +@InBook{ ismail2013, + Author = "Ismail, Mahmoud and Gee, Michael W. and Wall, Wolfgang A.", + Chapter = "CFD Challenge: Hemodynamic Simulation of a + Patient-Specific Aortic Coarctation Model with + Adjoint-Based Calibrated Windkessel Elements", + Title = "STACOM 2012, Nice, France.", + Year = "2013", + Publisher = "Springer Berlin Heidelberg", + Address = "Berlin, Heidelberg", + Pages = "44--52", + ISBN = "978-3-642-36961-2", + DOI = "10.1007/978-3-642-36961-2_6", + URL = "http://dx.doi.org/10.1007/978-3-642-36961-2_6" +} + +###InBook{ ismail2013, + Author = "Ismail, Mahmoud and Gee, Michael W. and Wall, Wolfgang A.", + Chapter = "CFD Challenge: Hemodynamic Simulation of a + Patient-Specific Aortic Coarctation Model with + Adjoint-Based Calibrated Windkessel Elements", + Title = "STACOM 2012, Nice, France.", + Year = "2013", + Publisher = "Springer Berlin Heidelberg", + Address = "Berlin, Heidelberg", + Pages = "44--52", + ISBN = "978-3-642-36961-2", + DOI = "10.1007/978-3-642-36961-2_6" +} + +@Article{ ismail2013ijnmbe, + Title = {Coupled and reduced dimensional modeling of respiratory + mechanics during spontaneous breathing}, + Author = {Ismail, M and Comerford, A and Wall, WA}, + Journal = {International Journal for Numerical Methods in Biomedical + Engineering}, + Volume = {29}, + Number = {11}, + Pages = {1285--1305}, + Year = {2013}, + Publisher = {Wiley Online Library} +} + +@Article{ ismail2013jcp, + Title = {Adjoint-based inverse analysis of windkessel parameters + for patient-specific vascular models}, + Author = {Ismail, Mahmoud and Wall, Wolfgang A and Gee, Michael W}, + Journal = {Journal of Computational Physics}, + Volume = {244}, + Pages = {113--130}, + Year = {2013}, + Publisher = {Elsevier} +} + +@Article{ ismail_adjoint-based_2013, + Title = {Adjoint-Based Inverse Analysis of Windkessel Parameters + for Patient-Specific Vascular Models}, + Volume = {244}, + JournalTitle = {Journal of Computational Physics}, + Year = {2013}, + Pages = {113--130}, + Author = {Ismail, Mahmoud and Wall, Wolfgang A. and Gee, Michael + W.} +} + +@InProceedings{ ismail_cfd_2012, + Title = {{{CFD}} Challenge: Hemodynamic Simulation of a + Patient-Specific Aortic Coarctation Model with + Adjoint-Based Calibrated Windkessel Elements}, + URL = {http://link.springer.com/chapter/10.1007/978-3-642-36961-2_6}, + ShortTitle = {{{CFD}} Challenge}, + BookTitle = {International {{Workshop}} on {{Statistical Atlases}} and + {{Computational Models}} of the {{Heart}}}, + Publisher = {{Springer}}, + URLDate = {2016-11-21}, + Year = {2012}, + Pages = {44--52}, + Author = {Ismail, Mahmoud and Gee, Michael W. and Wall, Wolfgang + A.} +} + +@Article{ iung2003prospective, + Title = {A prospective survey of patients with valvular heart + disease in Europe: The Euro Heart Survey on Valvular Heart + Disease}, + Author = {Iung, Bernard and Baron, Gabriel and Butchart, Eric G and + Delahaye, Fran{\c{c}}ois and Gohlke-B{\"a}rwolf, Christa + and Levang, Olaf W and Tornos, Pilar and Vanoverschelde, + Jean-Louis and Vermeer, Frank and Boersma, Eric and others}, + Journal = {European heart journal}, + Volume = {24}, + Number = {13}, + Pages = {1231--1243}, + Year = {2003}, + Publisher = {Oxford University Press} +} + +@Article{ iung2011epidemiology, + Title = {Epidemiology of valvular heart disease in the adult}, + Author = {Iung, B. and Vahanian, A.}, + Journal = {Nature Reviews Cardiology}, + Volume = {8}, + Number = {3}, + Pages = {162--172}, + Year = {2011}, + Publisher = {Nature Publishing Group} +} + +@Article{ jackson-james-86, + Author = {Jackson, G.W. and James, D.F.}, + Journal = {The Canadian Journal of Chemical Engineering}, + Title = {The permeability of fibrous porous media}, + Volume = {64}, + Year = {1986} +} + +###Article{ jackson-james-86, + Author = {Jackson, G.W. and James, D.F.}, + Journal = {The Canadian Journal of Chemical Engineering}, + Title = {The permeability of fibrous porous media}, + Volume = {64}, + Year = {1986} +} + +@Article{ james-davis-01, + Annote = {brinkman}, + Author = {James, D.F. and Davis, A.M.J.}, + code = {por8}, + Journal = {J. Fluid Mech.}, + Pages = {47-72}, + Title = {Flow at the interface of a model fibrous porous medium}, + Volume = {426}, + Year = {2001} +} + +###Article{ james-davis-01, + Annote = {brinkman}, + Author = {James, D.F. and Davis, A.M.J.}, + code = {por8}, + Journal = {J. Fluid Mech.}, + Pages = {47-72}, + Title = {Flow at the interface of a model fibrous porous medium}, + Volume = {426}, + Year = {2001} +} + +@InProceedings{ jarvinen-raback-lyly-05, + Author = {J\"arvinen, E. and R\.aback, P. and Lyly, M.}, + BookTitle = {2nd International Symposium on Modelling of Physiological + Flows -- MPF 2005, Sesimbra, Portugal}, + Title = {Optimization of fluid-structure interaction scheme for + arterial flow simulations}, + Year = {2005} +} + +###InProceedings{ jarvinen-raback-lyly-05, + Author = {J\"arvinen, E. and R\.aback, P. and Lyly, M.}, + BookTitle = {2nd International Symposium on Modelling of Physiological + Flows -- MPF 2005, Sesimbra, Portugal}, + Title = {Optimization of fluid-structure interaction scheme for + arterial flow simulations}, + Year = {2005} +} + +@Article{ jenkins1999coarctation, + Title = {Coarctation of the aorta: natural history and outcome + after surgical treatment}, + Author = {Jenkins, NP and Ward, C}, + Journal = {Qjm}, + Volume = {92}, + Number = {7}, + Pages = {365--371}, + Year = {1999}, + Publisher = {Oxford Univ Press} +} + +@Article{ jenkins_coarctation_1999, + Title = {Coarctation of the Aorta: Natural History and Outcome + after Surgical Treatment}, + Volume = {92}, + ShortTitle = {Coarctation of the Aorta}, + Number = {7}, + JournalTitle = {Qjm}, + Year = {1999}, + Pages = {365--371}, + Author = {Jenkins, N. P. and Ward, C.} +} + +@Article{ jenson2013raj, + Title = {Review of Cardiac and {MR} Perfusion and Imaging}, + Author = {Jenson, Sheldon and Craig, Steven and York, Gerald and + Steel, Kevin}, + Journal = {Journal of the American Osteopathic College of Radiology}, + Year = {2013}, + Volume = {2}, + File = {:Jenson2013RAJ.pdf:PDF}, + Keywords = {perfusion, MRI} +} + +@Book{ jikov-kozlov-94, + Address = {Berlin}, + Author = {Jikov, V. V. and Kozlov, S. M. and Ole\u{\i}nik, O. A.}, + Publisher = {Springer-Verlag}, + Title = {Homogenization of differential operators and integral + functionals}, + Year = {1994} +} + +###Book{ jikov-kozlov-94, + Address = {Berlin}, + Author = {Jikov, V. V. and Kozlov, S. M. and Ole\u{\i}nik, O. A.}, + Publisher = {Springer-Verlag}, + Title = {Homogenization of differential operators and integral + functionals}, + Year = {1994} +} + +@Book{ john2016finite, + Title = {Finite element methods for incompressible flow problems}, + Author = {John, Volker}, + Journal = {Springer series in computational mathematics (}, + Volume = {51}, + Year = {2016}, + Publisher = {Springer} +} + +@Article{ john_slip_2002, + Title = {Slip with Friction and Penetration with Resistance + Boundary Conditions for the {{Navier}}–{{Stokes}} + Equations—Numerical Tests and Aspects of the + Implementation}, + Volume = {147}, + ISSN = {0377-0427}, + URL = {http://www.sciencedirect.com/science/article/pii/S0377042702004375}, + DOI = {10.1016/S0377-0427(02)00437-5}, + Abstract = {We consider slip with friction and penetration with + resistance boundary conditions in the steady state + Navier–Stokes equations. This paper describes some + aspects of the implementation of these boundary conditions + for finite element discretizations. Numerical tests on two- + and three-dimensional channel flows across a step using the + slip with friction boundary condition study the influence + of the friction parameter on the position of the + reattachment point and the reattachment line of the + recirculating vortex, respectively.}, + Number = {2}, + JournalTitle = {Journal of Computational and Applied Mathematics}, + ShortJournal = {Journal of Computational and Applied Mathematics}, + URLDate = {2016-04-20}, + Date = {2002}, + Pages = {287-300}, + Author = {John, Volker} +} + +@Article{ john_time-dependent_2006, + Title = {Time-Dependent Flow across a Step: The Slip with Friction + Boundary Condition}, + Volume = {50}, + URL = {http://onlinelibrary.wiley.com/doi/10.1002/fld.1074/full}, + ShortTitle = {Time-Dependent Flow across a Step}, + Number = {6}, + JournalTitle = {International journal for numerical methods in fluids}, + URLDate = {2016-08-22}, + Date = {2006}, + Pages = {713--731}, + Author = {John, Volker and Liakos, Anastasios} +} + +@Article{ johnsiamreview2016, + Title = {On the divergence constraint in mixed finite element + methods for incompressible flows}, + Author = {John, V. and Linke, A. and Merdon, C. and Neilan, M. and + Rebholz, L.}, + Journal = {SIAM Review}, + Note = {in press} +} + +@Book{ johnson-97, + Address = {Cambridge}, + Author = {Johnson, R. S.}, + Publisher = {Cambridge University Press}, + Title = {A modern introduction to the mathematical theory of water + waves}, + Year = {1997} +} + +###Book{ johnson-97, + Address = {Cambridge}, + Author = {Johnson, R. S.}, + Publisher = {Cambridge University Press}, + Title = {A modern introduction to the mathematical theory of water + waves}, + Year = {1997} +} + +@Article{ johnson-saranen-86, + Author = {Johnson, C. and Saranen, J.}, + Journal = {Math. of Comp.}, + Month = {July}, + Number = {175}, + Pages = {1-18}, + Title = {Streamline diffusion methods for the incompressible + {Euler} and {Navier-Stokes} equations}, + Volume = {47}, + Year = {1986} +} + +###Article{ johnson-saranen-86, + Author = {Johnson, C. and Saranen, J.}, + Journal = {Math. of Comp.}, + Month = {July}, + Number = {175}, + Pages = {1-18}, + Title = {Streamline diffusion methods for the incompressible + {Euler} and {Navier-Stokes} equations}, + Volume = {47}, + Year = {1986} +} + +@Article{ johnson2010mrm, + Title = {Improved SNR in phase contrast velocimetry with five-point + balanced flow encoding.}, + Author = {Johnson, Kevin M. and Markl, Michael}, + Journal = {Magn Reson Med}, + Year = {2010}, + Month = {Feb}, + Number = {2}, + Pages = {349--355}, + Volume = {63}, + Abstract = {Phase contrast velocimetry can be utilized to measure + complex flow for both quantitative and qualitative + assessment of vascular hemodynamics. However, phase + contrast requires that a maximum measurable velocity be set + that balances noise and phase aliasing. To efficiently + reduce noise in phase contrast images, several + investigators have proposed extended velocity encoding + schemes that use extra encodings to unwrap phase aliasing; + however, existing techniques can lead to significant + increases in echo and scan time, limiting their clinical + benefits. In this work, we have developed a novel + five-point velocity encoding scheme that efficiently + reduces noise with minimal increases in scan and echo time. + Investigations were performed in phantoms, demonstrating a + 63\% increase in velocity-to-noise ratio compared to + standard four-point encoding schemes. Aortic velocity + measurements were performed in healthy volunteers, showing + similar velocity-to-noise ratio improvements. In those + volunteers, it was also demonstrated that, without + sacrificing accuracy, low-resolution images can be used for + the fifth encoding point, reducing the scan time penalty + from 25\% down to less than 1\%.}, + DOI = {10.1002/mrm.22202}, + Institution = {Department of Medical Physics, University of Wisconsin, + Madison, Wisconsin 53705-2275, USA. kmjohnson3@wisc.e}, + Keywords = {Algorithms; Aorta, anatomy /&/ histology/physiology; Blood + Flow Velocity, physiology; Contrast Media; Humans; Image + Enhancement, methods; Image Interpretation, + Computer-Assisted, methods; Imaging, Three-Dimensional, + methods; Magnetic Resonance Angiography, methods; + Reproducibility of Results; Rheology, methods; Sensitivity + and Specificity}, + Language = {eng}, + medline-pst = {ppublish}, + owner = {stoeckc}, + pmid = {20099326}, + timestamp = {2015.07.24}, + URL = {http://dx.doi.org/10.1002/mrm.22202} +} + +@Article{ johnston-kilpatrick-91, + Author = {Johnston, P.R. and Kilpatrick, D.}, + Journal = {J. Biomechanics}, + Number = {11}, + Pages = {1069-1077}, + Title = {Mathematical modelling of flow through an irregular + arterial stenosis}, + Volume = {24}, + Year = {1991} +} + +###Article{ johnston-kilpatrick-91, + Author = {Johnston, P.R. and Kilpatrick, D.}, + Journal = {J. Biomechanics}, + Number = {11}, + Pages = {1069-1077}, + Title = {Mathematical modelling of flow through an irregular + arterial stenosis}, + Volume = {24}, + Year = {1991} +} + +###Article{ johnston_non-newtonian_2004, + langid = {english}, + Title = {Non-{{Newtonian}} Blood Flow in Human Right Coronary + Arteries: Steady State Simulations}, + Volume = {37}, + ISSN = {00219290}, + URL = {http://linkinghub.elsevier.com/retrieve/pii/S0021929003003579}, + DOI = {10.1016/j.jbiomech.2003.09.016}, + ShortTitle = {Non-{{Newtonian}} Blood Flow in Human Right Coronary + Arteries}, + Abstract = {This study looks at blood flow through four different + right coronary arteries, which have been reconstructed from + bi-plane angiograms. Five non-Newtonian blood models, as + well as the usual Newtonian model of blood viscosity, are + used to study the wall shear stress in each of these + arteries at a particular point in the cardiac cycle. It was + found that in the case of steady flow in a given artery, + the pattern of wall shear stress is consistent across all + models. The magnitude of wall shear stress, however, is + influenced by the model used and correlates with graphs of + shear stress versus strain for each model. For mid-range + velocities of around 0:2 m sÀ1; the models are virtually + indistinguishable. Local and global non-Newtonian + importance factors are introduced, in an attempt to + quantify the types of flows where non-Newtonian behaviour + is significant. It is concluded that, while the Newtonian + model of blood viscosity is a good approximation in regions + of mid-range to high shear, it is advisable to use the + Generalised Power Law model (which tends to the Newtonian + model in those shear ranges in any case) in order to + achieve better approximation of wall shear stress at low + shear.}, + Number = {5}, + JournalTitle = {Journal of Biomechanics}, + URLDate = {2019-02-13}, + Year = {2004-05}, + Pages = {709-720}, + Author = {Johnston, Barbara M. and Johnston, Peter R. and Corney, + Stuart and Kilpatrick, David} +} + +@Article{ jones1999optimal, + Author = {Jones, DK and Horsfield, MA and Simmons, A}, + Title = {Optimal strategies for measuring diffusion in anisotropic + systems by magnetic resonance imaging}, + Journal = {Magnetic Resonance in Medicine}, + Year = {1999}, + Volume = {42} +} + +@InProceedings{ juarez-glowinski-pan-02, + Author = {Ju{\'a}rez, L. H. and Glowinski, R. and Pan, T. W.}, + BookTitle = {Proceedings of the Fifth International Conference on + Spectral and High Order Methods (ICOSAHOM-01) (Uppsala)}, + coden = {JSCOEB}, + fjournal = {Journal of Scientific Computing}, + ISSN = {0885-7474}, + Journal = {J. Sci. Comput.}, + mrclass = {76M10 (65M60 76T20)}, + mrnumber = {MR1910762}, + Number = {1-4}, + Pages = {683--694}, + Title = {Numerical simulation of the sedimentation of rigid bodies + in an incompressible viscous fluid by {L}agrange + multiplier/fictitious domain methods combined with the + {T}aylor-{H}ood finite element approximation}, + Volume = {17}, + Year = {2002} +} + +###InProceedings{ juarez-glowinski-pan-02, + Author = {Ju{\'a}rez, L. H. and Glowinski, R. and Pan, T. W.}, + BookTitle = {Proceedings of the Fifth International Conference on + Spectral and High Order Methods (ICOSAHOM-01) (Uppsala)}, + coden = {JSCOEB}, + fjournal = {Journal of Scientific Computing}, + ISSN = {0885-7474}, + Journal = {J. Sci. Comput.}, + mrclass = {76M10 (65M60 76T20)}, + mrnumber = {MR1910762}, + Number = {1-4}, + Pages = {683--694}, + Title = {Numerical simulation of the sedimentation of rigid bodies + in an incompressible viscous fluid by {L}agrange + multiplier/fictitious domain methods combined with the + {T}aylor-{H}ood finite element approximation}, + Volume = {17}, + Year = {2002} +} + +@Article{ jugdutt2003circ, + Title = {Ventricular Remodeling After Infarction and the + Extracellular Collagen Matrix: When Is Enough Enough?}, + Author = {Jugdutt, Bodh I.}, + Journal = {Circulation}, + Year = {2003}, + Number = {11}, + Pages = {1395-1403}, + Volume = {108}, + DOI = {10.1161/01.CIR.0000085658.98621.49}, + EPrint = {http://circ.ahajournals.org/content/108/11/1395.full.pdf+html}, + File = {jugdutt03.pdf:jugdutt03.pdf:PDF}, + timestamp = {2015/09/13}, + URL = {http://circ.ahajournals.org/content/108/11/1395.short} +} + +@InProceedings{ julier-03, + Author = {Julier, S.}, + BookTitle = {Proc. of the American Control Conference}, + date-added = {}, + date-modified = {}, + Pages = {2430--4234}, + Title = {The Spherical Simplex Unscented Transformation}, + Year = {2003} +} + +###InProceedings{ julier-03, + Author = {Julier, S.}, + BookTitle = {Proc. of the American Control Conference}, + date-added = {}, + date-modified = {}, + Pages = {2430--4234}, + Title = {The Spherical Simplex Unscented Transformation}, + Year = {2003} +} + +@InProceedings{ julier-uhlmann-02, + Author = {Julier, S. and Uhlmann, J.}, + BookTitle = {Proc. of IEEE Am.Contr.Conf.}, + date-added = {}, + date-modified = {}, + Pages = {887--892}, + Title = {Reduced Sigma Point Filters for the Propagation of Means + and Covariances through Nonlinear Transformations}, + Year = {2002} +} + +###InProceedings{ julier-uhlmann-02, + Author = {Julier, S. and Uhlmann, J.}, + BookTitle = {Proc. of IEEE Am.Contr.Conf.}, + date-added = {}, + date-modified = {}, + Pages = {887--892}, + Title = {Reduced Sigma Point Filters for the Propagation of Means + and Covariances through Nonlinear Transformations}, + Year = {2002} +} + +@Article{ julier-uhlmann-durrant-whyte-00, + Title = {{A new method for the nonlinear transformation of means + and covariances in filters and estimators}}, + Author = {Julier, S. and Uhlmann, J. and Durrant-Whyte, H.F.}, + Journal = {Automatic Control, IEEE Transactions on}, + Volume = {45}, + Number = {3}, + Pages = {477--482}, + ISSN = {0018-9286}, + Year = {2000}, + Publisher = {IEEE} +} + +###Article{ julier-uhlmann-durrant-whyte-00, + Title = {{A new method for the nonlinear transformation of means + and covariances in filters and estimators}}, + Author = {Julier, S. and Uhlmann, J. and Durrant-Whyte, H.F.}, + Journal = {Automatic Control, IEEE Transactions on}, + Volume = {45}, + Number = {3}, + Pages = {477--482}, + ISSN = {0018-9286}, + Year = {2000}, + Publisher = {IEEE} +} + +@InProceedings{ julier-uhlmann-durrant-whyte-95, + Author = {Julier, S. and Uhlmann, J. and Durrant-Whyte, H.F.}, + BookTitle = {American Control Conference}, + date-added = {2009-03-10 11:39:26 -0700}, + date-modified = {2009-03-10 11:43:35 -0700}, + Pages = {1628--1632}, + Title = {A new approach for filtering nonlinear systems}, + Year = {1995} +} + +###InProceedings{ julier-uhlmann-durrant-whyte-95, + Author = {Julier, S. and Uhlmann, J. and Durrant-Whyte, H.F.}, + BookTitle = {American Control Conference}, + date-added = {2009-03-10 11:39:26 -0700}, + date-modified = {2009-03-10 11:43:35 -0700}, + Pages = {1628--1632}, + Title = {A new approach for filtering nonlinear systems}, + Year = {1995} +} + +@InProceedings{ julier_new_1997, + Title = {New Extension of the {{Kalman}} Filter to Nonlinear + Systems}, + Volume = {3068}, + BookTitle = {Signal Processing, Sensor Fusion, and Target Recognition + {{VI}}}, + Publisher = {{International Society for Optics and Photonics}}, + Year = {1997}, + Pages = {182--194}, + Author = {Julier, Simon J. and Uhlmann, Jeffrey K.} +} + +@Article{ jung2006ejcs, + Title = {Investigating myocardial motion by MRI using tissue phase + mapping.}, + Author = {Jung, Bernd and Markl, Michael and F{\"{o}}ll, Daniela and + Hennig, J{\"{u}}rgen}, + Journal = {Eur J Cardiothorac Surg}, + Year = {2006}, + Month = {Apr}, + Pages = {S150--S157}, + Volume = {29 Suppl 1}, + Abstract = {Velocity-encoded phase contrast magnetic resonance imaging + (MRI) provides a tool to quantify regional myocardial wall + motion of the entire heart. It allows the acquisition of + three-directional velocity vector fields with high spatial + resolution that reflect the temporal evolution of + myocardial velocities over the cardiac cycle. In contrast + to other imaging modalities such as echocardiography left + ventricular performance can be assessed without limited + anatomical or functional coverage.Compared to other + techniques that quantify local myocardial contractility + (e.g. implanted ultrasonic crystals) by means of regional + displacement, phase contrast MRI provides information about + local and global left ventricular velocities (i.e. motion) + by utilizing the intrinsic motion sensitivity of MRI. The + resultant motion components of contraction, expansion, + rotation, lengthening, and shortening of the left ventricle + are described in high spatial and temporal detail. Phase + contrast measurements were performed in 12 healthy + volunteers with a respiratory-gated technique in order to + achieve a high temporal resolution of 13.8ms to demonstrate + the detailed assessment of global and regional myocardial + motion.Data revealed details in left ventricular motion + patterns that were previously not seen in phase contrast + measurements and are only known from echocardiography. For + all volunteers, characteristic myocardial motion patterns + and locally different radial (i.e. contraction and + expansion), rotational (i.e. twisting and untwisting) and + longitudinal (i.e. lengthening and shortening) motion + components could be detected with high accuracy.The phase + contrast MRI technique for high temporal resolution + velocity mapping is therefore very promising for the + investigation and better understanding of the myocardial + motion in normal subjects and patients with disturbed left + ventricular performance and may validate further testing of + different models of cardiac structure.}, + DOI = {10.1016/j.ejcts.2006.02.066}, + Institution = {Department of Diagnostic Radiology, Medical Physics, + University Hospital, Freiburg University, Hugstetterstr.55, + 79106 Freiburg, Germany. bernd.jung@uniklinik-freiburg.de}, + Keywords = {Heart, physiology; Humans; Image Processing, + Computer-Assisted, methods; Magnetic Resonance Imaging, + methods; Movement, physiology; Myocardial Contraction, + physiology; Rotation; Ventricular Function, Left, + physiology}, + Language = {eng}, + medline-pst = {ppublish}, + owner = {stoeckc}, + pii = {S1010-7940(06)00234-X}, + pmid = {16563784}, + timestamp = {2015.07.24}, + URL = {http://dx.doi.org/10.1016/j.ejcts.2006.02.066} +} + +@Article{ kailath-sayed-hassibi-00, + Title = {Linear estimation}, + Author = {Kailath, T. and Sayed, A.H. and Hassibi, B.}, + Year = {2000}, + Publisher = {Prentice-Hall, Inc.} +} + +###Article{ kailath-sayed-hassibi-00, + Title = {Linear estimation}, + Author = {Kailath, T. and Sayed, A.H. and Hassibi, B.}, + Year = {2000}, + Publisher = {Prentice-Hall, Inc.} +} + +@Article{ kajstura2010circ, + Title = {Cardiomyogenesis in the Adult Human Heart}, + Author = {Kajstura, Jan and Urbanek, Konrad and Perl, Shira and + Hosoda, Toru and Zheng, Hanqiao and Ogórek, Barbara and + Ferreira-Martins, João and Goichberg, Polina and + Rondon-Clavo, Carlos and Sanada, Fumihiro and D'Amario, + Domenico and Rota, Marcello and del Monte, Federica and + Orlic, Donald and Tisdale, John and Leri, Annarosa and + Anversa, Piero}, + Journal = {Circulation Research}, + Year = {2010}, + Number = {2}, + Pages = {305-315}, + Volume = {107}, + Abstract = {Rationale: The ability of the human heart to regenerate + large quantities of myocytes remains controversial, and the + extent of myocyte renewal claimed by different laboratories + varies from none to nearly 20% per year.Objective: To + address this issue, we examined the percentage of myocytes, + endothelial cells, and fibroblasts labeled by + iododeoxyuridine in postmortem samples obtained from cancer + patients who received the thymidine analog for therapeutic + purposes. Additionally, the potential contribution of DNA + repair, polyploidy, and cell fusion to the measurement of + myocyte regeneration was determined.Methods and Results: + The fraction of myocytes labeled by iododeoxyuridine ranged + from 2.5% to 46%, and similar values were found in + fibroblasts and endothelial cells. An average 22%, 20%, and + 13% new myocytes, fibroblasts, and endothelial cells were + generated per year, suggesting that the lifespan of these + cells was approximately 4.5, 5, and 8 years, respectively. + The newly formed cardiac cells showed a fully + differentiated adult phenotype and did not express the + senescence-associated protein p16INK4a. Moreover, + measurements by confocal microscopy and flow cytometry + documented that the human heart is composed predominantly + of myocytes with 2n diploid DNA content and that tetraploid + and octaploid nuclei constitute only a small fraction of + the parenchymal cell pool. Importantly, DNA repair, ploidy + formation, and cell fusion were not implicated in the + assessment of myocyte regeneration.Conclusions: Our + findings indicate that the human heart has a significant + growth reserve and replaces its myocyte and nonmyocyte + compartment several times during the course of life.}, + DOI = {10.1161/CIRCRESAHA.110.223024}, + EPrint = {http://circres.ahajournals.org/content/107/2/305.full.pdf+html}, + File = {kajstura10.pdf:kajstura10.pdf:PDF}, + timestamp = {2015/09/23}, + URL = {http://circres.ahajournals.org/content/107/2/305.abstract} +} + +@Article{ kalman-bucy-61, + Author = {Kalman, R. and Bucy, R.}, + Journal = {Trans. ASME J. Basic. Eng}, + Pages = {95-108}, + Title = {New results in linear filtering and prediction theory}, + Volume = {83}, + Year = {1961} +} + +###Article{ kalman-bucy-61, + Author = {Kalman, R. and Bucy, R.}, + Journal = {Trans. ASME J. Basic. Eng}, + Pages = {95-108}, + Title = {New results in linear filtering and prediction theory}, + Volume = {83}, + Year = {1961} +} + +@Article{ kalnay_4-d-var_2007, + Title = {4-{{D}}-{{Var}} or Ensemble {{Kalman}} Filter?}, + Volume = {59}, + ISSN = {null}, + URL = {https://doi.org/10.1111/j.1600-0870.2007.00261.x}, + DOI = {10.1111/j.1600-0870.2007.00261.x}, + Abstract = {We consider the relative advantages of two advanced data + assimilation systems, 4-D-Var and ensemble Kalman filter + (EnKF), currently in use or under consideration for + operational implementation.With the Lorenz model, we + explore the impact of tuning assimilation parameters such + as the assimilation window length and background error + covariance in 4-D-Var, variance inflation in EnKF, and the + effect of model errors and reduced observation coverage. + For short assimilation windows EnKF gives more accurate + analyses. Both systems reach similar levels of accuracy if + long windows are used for 4-D-Var. For infrequent + observations, when ensemble perturbations grow non-linearly + and become non-Gaussian, 4-D-Var attains lower errors than + EnKF. If the model is imperfect, the 4-D-Var with long + windows requires weak constraint. Similar results are + obtained with a quasi-geostrophic channel model. EnKF + experiments made with the primitive equations SPEEDY model + provide comparisons with 3-D-Var and guidance on model + error and ‘observation localization’. Results obtained + using operational models and both simulated and real + observations indicate that currently EnKF is becoming + competitive with 4-D-Var, and that the experience acquired + with each of these methods can be used to improve the + other. A table summarizes the pros and cons of the two + methods.}, + Number = {5}, + JournalTitle = {Tellus A: Dynamic Meteorology and Oceanography}, + URLDate = {2019-02-27}, + Year = {2007-01-01}, + Pages = {758-773}, + Author = {Kalnay, Eugenia and Li, Hong and Miyoshi, Takemasa and + Yang, Shu-Chih and Ballabrera-Poy, Joaquim} +} + +@Book{ kalnay_atmospheric_2003, + Title = {Atmospheric Modeling, Data Assimilation and + Predictability}, + Publisher = {{Cambridge university press}}, + Year = {2003}, + Author = {Kalnay, Eugenia} +} + +@Article{ kanzaki2010circ, + Title = {Three-dimensional architecture of cardiomyocytes and + connective tissue in human heart revealed by scanning + electron microscopy}, + Author = {Kanzaki, Yumiko and Terasaki, Fumio and Okabe, Makoto and + Fujita, Shuichi and Katashima, Takashi and Otsuka, Kaoru + and Ishizaka, Nobukazu}, + Journal = {Circulation}, + Volume = {122}, + Number = {19}, + Pages = {1973--1974}, + Year = {2010}, + File = {:Kanzaki2010Circ.pdf:PDF}, + Publisher = {Am Heart Assoc} +} + +@Article{ karampinos2010intravoxel, + Title = {Intravoxel partially coherent motion technique: + characterization of the anisotropy of skeletal muscle + microvasculature}, + Author = {Karampinos, Dimitrios C and King, Kevin F and Sutton, + Bradley P and Georgiadis, John G}, + Journal = {Journal of Magnetic Resonance Imaging}, + Volume = {31}, + Number = {4}, + Pages = {942--953}, + Year = {2010}, + Publisher = {Wiley Online Library} +} + +@Article{ karcher-kolesnikov-andreev-02, + Author = {Karcher, C. and Kolesnikov, Y. and Andreev, O. and Thess, + A.}, + code = {mhd41}, + Journal = {Eur. J. Mech. B/Fluids}, + Pages = {75-90}, + Title = {Natural convection in a liquid metal heated from above and + influenced by a magnetic field}, + Volume = {21}, + Year = {2002} +} + +###Article{ karcher-kolesnikov-andreev-02, + Author = {Karcher, C. and Kolesnikov, Y. and Andreev, O. and Thess, + A.}, + code = {mhd41}, + Journal = {Eur. J. Mech. B/Fluids}, + Pages = {75-90}, + Title = {Natural convection in a liquid metal heated from above and + influenced by a magnetic field}, + Volume = {21}, + Year = {2002} +} + +@Article{ karlsen-risebro-01, + Author = {Karlsen, K. H. and Risebro, N. H.}, + Journal = {$M^2$AN}, + Number = {2}, + Pages = {239-270}, + Title = {On convergence of finite difference schemes for viscous + and inviscid conservation laws with rough coefficients}, + Volume = {35}, + Year = {2001} +} + +###Article{ karlsen-risebro-01, + Author = {Karlsen, K. H. and Risebro, N. H.}, + Journal = {$M^2$AN}, + Number = {2}, + Pages = {239-270}, + Title = {On convergence of finite difference schemes for viscous + and inviscid conservation laws with rough coefficients}, + Volume = {35}, + Year = {2001} +} + +@Article{ katayama2016diagnosis, + Title = {Diagnosis and management of patients with asymptomatic + severe aortic stenosis}, + Author = {Katayama, Minako and Chaliki, Hari P}, + Journal = {World journal of cardiology}, + Volume = {8}, + Number = {2}, + Pages = {192}, + Year = {2016}, + Publisher = {Baishideng Publishing Group Inc} +} + +@Article{ kato-84, + Author = {Kato, T.}, + Journal = {Math. Zeit.}, + Pages = {471-480}, + Title = {Strong {$L^p$} solutions of the {Navier-Stokes} equations + in {$R^m$} with applications to weak solutions}, + Volume = {187}, + Year = {1984} +} + +###Article{ kato-84, + Author = {Kato, T.}, + Journal = {Math. Zeit.}, + Pages = {471-480}, + Title = {Strong {$L^p$} solutions of the {Navier-Stokes} equations + in {$R^m$} with applications to weak solutions}, + Volume = {187}, + Year = {1984} +} + +@Book{ kelley-95, + Author = {Kelley}, + Publisher = {SIAM}, + Title = {Iterative methods for linear and nonlinear equations}, + Year = {1995} +} + +###Book{ kelley-95, + Author = {Kelley}, + Publisher = {SIAM}, + Title = {Iterative methods for linear and nonlinear equations}, + Year = {1995} +} + +@Article{ kerckhoffs2012mrc, + Title = {A single strain-based growth law predicts concentric and + eccentric cardiac growth during pressure and volume + overload }, + Author = {Roy C.P. Kerckhoffs and Jeffrey H. Omens and Andrew D. + McCulloch}, + Journal = {Mechanics Research Communications }, + Year = {2012}, + Note = {Recent Advances in the Biomechanics of Growth and + Remodeling }, + Pages = {40 - 50}, + Volume = {42}, + Abstract = {Adult cardiac muscle adapts to mechanical changes in the + environment by growth and remodeling (G&R) via a + variety of mechanisms. Hypertrophy develops when the heart + is subjected to chronic mechanical overload. In ventricular + pressure overload (e.g. due to aortic stenosis) the heart + typically reacts by concentric hypertrophic growth, + characterized by wall thickening due to myocyte radial + growth when sarcomeres are added in parallel. In + ventricular volume overload, an increase in filling + pressure (e.g. due to mitral regurgitation) leads to + eccentric hypertrophy as myocytes grow axially by adding + sarcomeres in series leading to ventricular cavity + enlargement that is typically accompanied by some wall + thickening. The specific biomechanical stimuli that + stimulate different modes of ventricular hypertrophy are + still poorly understood. In a recent study, based on in + vitro studies in micropatterned myocyte cell cultures + subjected to stretch, we proposed that cardiac myocytes + grow longer to maintain a preferred sarcomere length in + response to increased fiber strain and grow thicker to + maintain interfilament lattice spacing in response to + increased cross-fiber strain. Here, we test whether this + growth law is able to predict concentric and eccentric + hypertrophy in response to aortic stenosis and mitral valve + regurgitation, respectively, in a computational model of + the adult canine heart coupled to a closed loop model of + circulatory hemodynamics. A non-linear finite element model + of the beating canine ventricles coupled to the circulation + was used. After inducing valve alterations, the ventricles + were allowed to adapt in shape in response to mechanical + stimuli over time. The proposed growth law was able to + reproduce major acute and chronic physiological responses + (structural and functional) when integrated with + comprehensive models of the pressure-overloaded and + volume-overloaded canine heart, coupled to a closed-loop + circulation. We conclude that strain-based biomechanical + stimuli can drive cardiac growth, including wall thickening + during pressure overload. }, + DOI = {http://dx.doi.org/10.1016/j.mechrescom.2011.11.004}, + File = {kerckhoffs12.pdf:kerckhoffs12.pdf:PDF}, + ISSN = {0093-6413}, + Keywords = {Cardiac growth}, + timestamp = {2015/09/10}, + URL = {http://www.sciencedirect.com/science/article/pii/S0093641311002163} +} + +@InCollection{ kerckhoffs_effect_2007, + Title = {Effect of pacing site and infarct location on regional + mechanics and global hemodynamics in a model based study of + heart failure}, + Author = {Kerckhoffs, R.C.P. and McCulloch, A.D. and Omens, J.H. and + Mulligan, L.J.}, + BookTitle = {Functional Imaging and Modeling of the Heart}, + Publisher = {Springer}, + Year = {2007}, + Pages = {350--360}, + File = {Kerckhoffs_2007b.pdf:/home/hoermann/.zotero/zotero/krpbc0h6.default/zotero/storage/AZSS4J37/Kerckhoffs_2007b.pdf:application/pdf}, + URL = {http://link.springer.com/chapter/10.1007/978-3-540-72907-5_36}, + URLDate = {2014-11-27} +} + +@Article{ kerckhoffs_effects_2009, + Title = {Effects of biventricular pacing and scar size in a + computational model of the failing heart with left bundle + branch block}, + Author = {Kerckhoffs, Roy C.P. and McCulloch, A.D. and Omens, J.H. + and Mulligan, L.J.}, + Journal = {Medical Image Analysis}, + Year = {2009}, + Month = apr, + Number = {2}, + Pages = {362--369}, + Volume = {13}, + DOI = {10.1016/j.media.2008.06.013}, + File = {Kerckhoffs2008.pdf:/home/hoermann/.zotero/zotero/krpbc0h6.default/zotero/storage/Z3WB8T3H/Kerckhoffs2008.pdf:application/pdf}, + ISSN = {13618415}, + Language = {en}, + URL = {http://linkinghub.elsevier.com/retrieve/pii/S1361841508000698}, + URLDate = {2014-11-27} +} + +@Article{ keshavarz2015complianceaoc, + Title = {The role of aortic compliance in determination of + coarctation severity: lumped parameter modeling, in vitro + study and clinical evaluation}, + Author = {Keshavarz-Motamed, Zahra and Edelman, Elazer R and + Motamed, Payam K and Garcia, Julio and Dahdah, Nagib and + Kadem, Lyes}, + Journal = {Journal of biomechanics}, + Volume = {48}, + Number = {16}, + Pages = {4229--4237}, + Year = {2015}, + Publisher = {Elsevier} +} + +@PhdThesis{ kherief-84, + Annote = {mhd, existence, long time}, + Author = {Kherief, K.}, + code = {mhd31}, + School = {Universit{\'e} de Paris {VII}}, + Title = {Quelques propri{\'e}t{\'e}s des {\'e}quations de la + magn{\'e}tohydrodynamique stationnaires et d'{\'e}volution}, + Type = {Th{\`e}se}, + Year = {1984} +} + +###PhdThesis{ kherief-84, + Annote = {mhd, existence, long time}, + Author = {Kherief, K.}, + code = {mhd31}, + School = {Universit{\'e} de Paris {VII}}, + Title = {Quelques propri{\'e}t{\'e}s des {\'e}quations de la + magn{\'e}tohydrodynamique stationnaires et d'{\'e}volution}, + Type = {Th{\`e}se}, + Year = {1984} +} + +@Article{ kikuchi-93, + Author = {Kikuchi, F.}, + Journal = {Sugaku expositions}, + Month = {June}, + Number = {1}, + Pages = {332-345}, + Title = {Numerical analysis electrostatic and magnetostatic + problem}, + Volume = {6}, + Year = {1993} +} + +###Article{ kikuchi-93, + Author = {Kikuchi, F.}, + Journal = {Sugaku expositions}, + Month = {June}, + Number = {1}, + Pages = {332-345}, + Title = {Numerical analysis electrostatic and magnetostatic + problem}, + Volume = {6}, + Year = {1993} +} + +@Article{ kilner_helical_1993, + Title = {Helical and Retrograde Secondary Flow Patterns in the + Aortic Arch Studied by Three-Directional Magnetic Resonance + Velocity Mapping.}, + Volume = {88}, + Number = {5}, + JournalTitle = {Circulation}, + Year = {1993}, + Pages = {2235--2247}, + Author = {Kilner, Philip J. and Yang, Guang Z. and Mohiaddin, Raad + H. and Firmin, David N. and Longmore, Donald B.} +} + +@Article{ kilner_imaging_2011, + langid = {english}, + Title = {Imaging Congenital Heart Disease in Adults}, + Volume = {84}, + ISSN = {0007-1285, 1748-880X}, + URL = {http://www.birpublications.org/doi/10.1259/bjr/74240815}, + DOI = {10.1259/bjr/74240815}, + Issue = {special\_issue\_3}, + JournalTitle = {The British Journal of Radiology}, + URLDate = {2019-02-09}, + Year = {2011-12}, + Pages = {S258-S268}, + Author = {Kilner, P J} +} + +@Article{ kim1995jacc, + Title = {Left ventricular blood flow patterns in normal subjects: a + quantitative analysis by three-dimensional magnetic + resonance velocity mapping.}, + Author = {Kim, W. Y. and Walker, P. G. and Pedersen, E. M. and + Poulsen, J. K. and Oyre, S. and Houlind, K. and Yoganathan, + A. P.}, + Journal = {J Am Coll Cardiol}, + Year = {1995}, + Month = {Jul}, + Number = {1}, + Pages = {224--238}, + Volume = {26}, + Abstract = {Magnetic resonance velocity mapping was used to + investigate the hypothesis of a vortex motion within the + left ventricle interacting with mitral valve motion and + inflow velocity.In vitro flow visualization studies have + suggested the presence of a large anterior vortex inside + the left ventricle during mitral inflow. However, to our + knowledge the occurrence of this phenomenon has not been + demonstrated in the human left ventricle.Magnetic resonance + velocity mapping was performed in 26 healthy volunteers + using a flow-adjusted gradient sequence for + three-dimensional flow velocity acquisition in the + long-axis plane of the left ventricle. By computer + processing, the flow vectors in the left ventricle were + visualized and animated dynamically.The early diastolic + mitral inflow was apically directed, and a large + counterclockwise anterior vortex was created within the + left ventricle shortly after the onset of the mid-diastolic + semiclosure of the anterior mitral leaflet. During + mid-diastolic diastasis, mitral inflow ceased until the + flow accelerated again at atrial systole. The final closure + of the mitral valve was preceded by a smaller vortex seen + at the tips of the mitral leaflets. At systolic ejection, + all flow vectors were directed toward the left ventricular + outflow tract. The anterior vortex had a radius of 1.62 +/- + 0.24 cm (mean +/- SD), and the average angular velocity + (i.e., the rotation of an element about the center of the + vortex within the central core) was 30.08 +/- 9.98 + radians/s. The maximal kinetic energy of the anterior + vortex was 4.3 x 10(-4) +/- 7.1 x 10(-5) J.The hypothesis + of a diastolic vortex formation in the human left ventricle + was confirmed, and its close temporal relation to the + motion of the anterior mitral leaflet was demonstrated.}, + Institution = {Department of Thoracic and Cardiovascular Surgery, Skejby + Sygehus, Aarhus University Hospital, Denmark.}, + Keywords = {Adult; Blood Flow Velocity; Female; Heart Ventricles, + anatomy /&/ histology; Humans; Magnetic Resonance Imaging, + methods; Male; Mitral Valve, anatomy /&/ + histology/physiology; Regional Blood Flow; Reproducibility + of Results; Ventricular Function}, + Language = {eng}, + medline-pst = {ppublish}, + owner = {stoeckc}, + pii = {073510979500141L}, + pmid = {7797756}, + timestamp = {2015.07.28} +} + +@Article{ kim2009augmented, + Title = {Augmented Lagrangian method for constraining the shape of + velocity profiles at outlet boundaries for + three-dimensional finite element simulations of blood + flow}, + Author = {Kim, HJ and Figueroa, CA and Hughes, TJR and Jansen, KE + and Taylor, CA}, + Journal = {Comp. Methods Appl. Mech. Engrg.}, + Volume = {198}, + Number = {45}, + Pages = {3551--3566}, + Year = {2009}, + Publisher = {Elsevier} +} + +@Article{ kim2010abe, + Title = {Patient-Specific Modeling of Blood Flow and Pressure in + Human Coronary Arteries}, + Author = {Kim, H. J. and Vignon-Clementel, I. E. and Coogan, J. S. + and Figueroa, C. A. and Jansen, K. E. and Taylor, C. A.}, + Journal = {Annals of Biomedical Engineering}, + Year = {2010}, + Month = {Jun}, + Number = {10}, + Pages = {3195--3209}, + Volume = {38}, + DOI = {10.1007/s10439-010-0083-6}, + File = {:Kim2010ABE.pdf:PDF}, + ISSN = {1573-9686}, + Keywords = {coronary flow}, + Publisher = {Springer Science + Business Media}, + URL = {http://dx.doi.org/10.1007/s10439-010-0083-6} +} + +@Article{ kim_patient-specific_2010, + langid = {english}, + Title = {Patient-{{Specific Modeling}} of {{Blood Flow}} and + {{Pressure}} in {{Human Coronary Arteries}}}, + Volume = {38}, + ISSN = {1573-9686}, + URL = {https://doi.org/10.1007/s10439-010-0083-6}, + DOI = {10.1007/s10439-010-0083-6}, + Abstract = {Coronary flow is different from the flow in other parts of + the arterial system because it is influenced by the + contraction and relaxation of the heart. To model coronary + flow realistically, the compressive force of the heart + acting on the coronary vessels needs to be included. In + this study, we developed a method that predicts coronary + flow and pressure of three-dimensional epicardial coronary + arteries by considering models of the heart and arterial + system and the interactions between the two models. For + each coronary outlet, a lumped parameter coronary vascular + bed model was assigned to represent the impedance of the + downstream coronary vascular networks absent in the + computational domain. The intramyocardial pressure was + represented with either the left or right ventricular + pressure depending on the location of the coronary + arteries. The left and right ventricular pressure were + solved from the lumped parameter heart models coupled to a + closed loop system comprising a three-dimensional model of + the aorta, three-element Windkessel models of the rest of + the systemic circulation and the pulmonary circulation, and + lumped parameter models for the left and right sides of the + heart. The computed coronary flow and pressure and the + aortic flow and pressure waveforms were realistic as + compared to literature data.}, + Number = {10}, + JournalTitle = {Annals of Biomedical Engineering}, + ShortJournal = {Ann Biomed Eng}, + URLDate = {2019-03-09}, + Year = {2010-10-01}, + Pages = {3195-3209}, + Author = {Kim, H. J. and Vignon-Clementel, I. E. and Coogan, J. S. + and Figueroa, C. A. and Jansen, K. E. and Taylor, C. A.} +} + +@Article{ klein-95, + Author = {Klein, R.}, + Journal = {J. Comput. Phys.}, + Pages = {213-237}, + Title = {Semi-{I}mplicit {E}xtension of a {G}odunov-{T}ype {S}cheme + {B}ased on {L}ow {M}ach {N}umber {A}symptotics {I}: + {O}ne-{D}imensional {F}low}, + Volume = {121}, + Year = {1995} +} + +###Article{ klein-95, + Author = {Klein, R.}, + Journal = {J. Comput. Phys.}, + Pages = {213-237}, + Title = {Semi-{I}mplicit {E}xtension of a {G}odunov-{T}ype {S}cheme + {B}ased on {L}ow {M}ach {N}umber {A}symptotics {I}: + {O}ne-{D}imensional {F}low}, + Volume = {121}, + Year = {1995} +} + +@Article{ klein2010elastix, + Author = {Klein, S. and Staring, M. and Murphy, K. and Viergever, + M.A. and Pluim, J.P.W.}, + Journal = {Medical Imaging, IEEE Transactions on}, + Title = {elastix: A Toolbox for Intensity-Based Medical Image + Registration}, + Year = {2010}, + Month = {Jan}, + Volume = {29}, + Number = {1}, + Pages = {196-205}, + Keywords = {biomedical MRI;computerised tomography;image + registration;medical computing;medical image + processing;public domain software;automated data + processing;command-line interface;computed + tomography;elastix;intensity-based medical image + registration;magnetic resonance + imaging;scripting;Application software;Biomedical + imaging;Cost function;Image processing;Image + registration;Image segmentation;MONOS devices;Open source + software;Optimization methods;Spatial + resolution;elastix;image registration;medical imaging;open + source;software;Diagnostic Imaging;Humans;Image Processing, + Computer-Assisted;Models, Biological;Normal + Distribution;Software}, + URL = {elastix.isi.uu.nl}, + ISSN = {0278-0062} +} + +@Article{ kleinstreuer-li-farber-07, + Author = {Kleinstreuer, C. and Li, Z. and Farber, M.A.}, + Journal = {Annu Rev Biomed Eng.}, + Pages = {169--204}, + Title = {Fluid-structure interaction analyses of stented abdominal + aortic aneurysms}, + Volume = {9}, + Year = {2007} +} + +###Article{ kleinstreuer-li-farber-07, + Author = {Kleinstreuer, C. and Li, Z. and Farber, M.A.}, + Journal = {Annu Rev Biomed Eng.}, + Pages = {169--204}, + Title = {Fluid-structure interaction analyses of stented abdominal + aortic aneurysms}, + Volume = {9}, + Year = {2007} +} + +@Article{ klepach2012mrc, + Title = {Growth and remodeling of the left ventricle: A case study + of myocardial infarction and surgical ventricular + restoration}, + Author = {Klepach, D. and Lee, L. C. and Wenk, J. F. and Ratcliffe, + M. B. and Zohdi, T. I. and Navia, J. L. and Kassab, G. S. + and Kuhl, E. and Guccione, J. M.}, + Journal = {Mechanics research communications}, + Year = {2012}, + Pages = {134--141}, + Volume = {42}, + File = {:klepach12.pdf:PDF}, + Publisher = {Elsevier}, + timestamp = {2014/11/27} +} + +@InCollection{ knabner-igler-00, + Address = {Berlin}, + Author = {Knabner, P. and Igler, B.}, + BookTitle = {Lectures on applied mathematics (Munich, 1999)}, + code = {por24}, + Pages = {157--175}, + Publisher = {Springer}, + Title = {Structural identification of nonlinear coefficient + functions in transport processes through porous media}, + Year = {2000} +} + +###InCollection{ knabner-igler-00, + Address = {Berlin}, + Author = {Knabner, P. and Igler, B.}, + BookTitle = {Lectures on applied mathematics (Munich, 1999)}, + code = {por24}, + Pages = {157--175}, + Publisher = {Springer}, + Title = {Structural identification of nonlinear coefficient + functions in transport processes through porous media}, + Year = {2000} +} + +@Unpublished{ knoll-keyes, + Author = {Knoll, D.A. and Keyes, D.E.}, + Note = {J. Comp. Phys. (in press)}, + Title = {Jacobian-free {Newton-Krylov} methods: a surveys of + approaches and applications} +} + +###Unpublished{ knoll-keyes, + Author = {Knoll, D.A. and Keyes, D.E.}, + Note = {J. Comp. Phys. (in press)}, + Title = {Jacobian-free {Newton-Krylov} methods: a surveys of + approaches and applications} +} + +@Article{ koay2006unifying, + Author = {Cheng Guan Koay and Lin-Ching Chang and John D. Carew and + Carlo Pierpaoli and Peter J. Basser}, + Title = {A unifying theoretical and algorithmic framework for least + squares methods of estimation in diffusion tensor imaging + }, + Journal = {Journal of Magnetic Resonance }, + Year = {2006}, + Volume = {182}, + Pages = {115 - 125}, + Number = {1}, + DOI = {http://dx.doi.org/10.1016/j.jmr.2006.06.020}, + ISSN = {1090-7807} +} + +@InProceedings{ kobuchi-ito-ogiwara-88, + Annote = {blood, red cell, rouleaux}, + Author = {Kobuchi, Y. andIto, T. and Ogiwara, A. }, + BookTitle = {Biomathematics and related computational problems (Naples, + 1987)}, + code = {cel7}, + Pages = {371-379}, + Publisher = {Kluwer Acad. Publ., Dordrecht}, + Title = {A model for rouleaux pattern formation of red blood cells. + Enumeration of absolutely stable patterns}, + Year = {1988} +} + +###InProceedings{ kobuchi-ito-ogiwara-88, + Annote = {blood, red cell, rouleaux}, + Author = {Kobuchi, Y. andIto, T. and Ogiwara, A. }, + BookTitle = {Biomathematics and related computational problems (Naples, + 1987)}, + code = {cel7}, + Pages = {371-379}, + Publisher = {Kluwer Acad. Publ., Dordrecht}, + Title = {A model for rouleaux pattern formation of red blood cells. + Enumeration of absolutely stable patterns}, + Year = {1988} +} + +@Article{ koh2007ajr, + Title = {Diffusion-Weighted {MRI} in the Body: Applications and + Challenges in Oncology}, + Author = {Koh, Dow-Mu and Collins, David J.}, + Journal = {American Journal of Roentgenology}, + Year = {2007}, + Number = {6}, + Pages = {1622--1635}, + Volume = {188}, + Abstract = {ABSTRACT : OBJECTIVE. In this article, we present the + basic principles of diffusion-weighted imaging (DWI) that + can aid radiologists in the qualitative and quantitative + interpretation of DW images. However, a detailed discussion + of the physics of DWI is beyond the scope of this article. + A short discussion ensues on the technical aspects of + performing DWI in the body. The emerging applications of + DWI for tumor detection, tumor characterization, + distinguishing tumor tissue from nontumor tissue, and + monitoring and predicting treatment response are + highlighted. The challenges to widespread adoption of the + technique for cancer imaging in the body are + discussed.CONCLUSION. DWI derives its image contrast from + differences in the motion of water molecules between + tissues. Such imaging can be performed quickly without the + need for the administration of exogenous contrast medium. + The technique yields qualitative and quantitative + information that reflects changes at a cellular level and + provides unique insights about tumor cellularity and the + integrity of cell membranes. Recent advances enable the + technique to be widely applied for tumor evaluation in the + abdomen and pelvis and have led to the development of + whole-body DWI.}, + DOI = {10.2214/AJR.06.1403}, + ISSN = {0361-803X}, + owner = {david}, + ShortTitle = {Diffusion-Weighted {MRI} in the Body}, + timestamp = {2015-05-28 17:38:10}, + URL = {http://www.ajronline.org/doi/abs/10.2214/AJR.06.1403}, + URLDate = {2015-05-28} +} + +@Article{ kolodziej-98, + Author = {Kolodziej, J.A. and Dzi\c{e}cielak, R. and Ko{\'n}zak, Z.}, + Journal = {Transport in Porous Media}, + optpages = {1-19}, + optvolume = {32}, + Title = {Permeability Tensor for Heterogeneous Porous Medium of + Fibre Type}, + Year = {1998} +} + +###Article{ kolodziej-98, + Author = {Kolodziej, J.A. and Dzi\c{e}cielak, R. and Ko{\'n}zak, Z.}, + Journal = {Transport in Porous Media}, + optpages = {1-19}, + optvolume = {32}, + Title = {Permeability Tensor for Heterogeneous Porous Medium of + Fibre Type}, + Year = {1998} +} + +@Article{ koltukluoglu_boundary_2018, + langid = {english}, + Title = {Boundary Control in Computational Haemodynamics}, + Volume = {847}, + ISSN = {0022-1120, 1469-7645}, + URL = {https://www.cambridge.org/core/journals/journal-of-fluid-mechanics/article/boundary-control-in-computational-haemodynamics/9E02FA65754C0EB987E4B01593FD1437}, + DOI = {10.1017/jfm.2018.329}, + Abstract = {In this work, a data assimilation method is proposed + following an optimise-then-discretise approach, and is + applied in the context of computational haemodynamics. The + methodology aims to make use of phase-contrast magnetic + resonance imaging to perform optimal flow control in + computational fluid dynamic simulations. Flow matching + between observations and model predictions is performed in + luminal regions, excluding near-wall areas, improving the + near-wall flow reconstruction to enhance the estimation of + related quantities such as wall shear stresses. The + proposed approach remarkably improves the flow field at the + aortic root and reveals a great potential for predicting + clinically relevant haemodynamic phenomenology. This work + presents model validation against an analytical solution + using the standard 3-D Hagen–Poiseuille flow, and + validation with real data involving the flow control + problem in a glass replica of a human aorta imaged with a + 3T magnetic resonance scanner. In vitro experiments consist + of both a numerically generated reference flow solution, + which is considered as the ground truth, as well as real + flow MRI data obtained from phase-contrast flow + acquisitions. The validation against the in vitro flow MRI + experiments is performed for different flow regimes and + model parameters including different mesh refinements.}, + JournalTitle = {Journal of Fluid Mechanics}, + URLDate = {2019-03-08}, + Year = {2018-07}, + Pages = {329-364}, + Author = {Koltukluo{\u{g}}lu, Taha S. and Blanco, Pablo J.} +} + +@PhdThesis{ koltukluoglu_fourier_2019, + langid = {english}, + Location = {{Zürich, Switzerland}}, + Title = {Fourier {{Spectral Data Assimilation}} in {{Computational + Haemodynamics}}}, + Institution = {{ETH Zürich}}, + Year = {2019}, + Author = {Koltukluo{\u{g}}lu, TAHA S.} +} + +@Article{ komamura1993ajp, + Title = {Exhaustion of Frank-Starling mechanism in conscious dogs + with heart failure}, + Author = {Komamura, K. and Shannon, R. P. and Ihara, T. and Shen, Y. + T. and Mirsky, I. and Bishop, S. P. and Vatner, S. F.}, + Journal = {American Journal of Physiology - Heart and Circulatory + Physiology}, + Year = {1993}, + Number = {4}, + Pages = {H1119--H1131}, + Volume = {265}, + Abstract = {The goal of this study was to elucidate the ability of the + left ventricle to accommodate an increase in preload + (Frank-Starling mechanism) in the presence of congestive + heart failure (CHF) but in the absence of the complicating + effects of hypertrophy and fibrosis. To accomplish this, + the effects of volume loading were examined in eight + conscious dogs during the control state and after 3 wk of + right ventricular pacing (240 beats/min). CHF increased + heart rate (by 16 +/- 5 from 92 +/- 5 beats/min), left + ventricular (LV) end-diastolic pressure (by 17 +/- 2 from + 10 +/- 1 mmHg), and LV end-diastolic volume (EDV; by 23 +/- + 4 from 57 +/- 3 ml). Despite reduced LV ejection fraction + (from 54 +/- 3 to 31 +/- 3\%), there was no significant + change in cardiac output (2.5 +/- 0.3 l/min) compared with + control (2.7 +/- 0.2 l/min). Stroke volume was preserved + (control 19 +/- 2 ml; CHF 18 +/- 2 ml) at a constant heart + rate by a shift to the right in the relationship between LV + stroke volume and EDV, indicating the importance of chronic + ventricular dilatation in maintaining pump performance. In + the control state, acute volume load increased LV EDV (by + 17 +/- 2 ml) and stroke volume (by 11 +/- 2 ml), whereas in + CHF it did not increase LV EDV or stroke volume. Scanning + electron microscopy revealed areas of reduced collagen + weave pattern surrounding myofibers. Myocyte + cross-sectional area by transmission electron microscopy + was significantly reduced, and there were multiple + electron-dense expansions of the Z lines with disruption of + the normal lateral sarcomere alignment. These morphological + findings suggest that chronic ventricular dilatation + utilized in CHF results from myocyte stretch and + morphological intracellular rearrangement. Furthermore, the + failing heart cannot further augment stroke volume by + acutely increasing EDV in CHF, suggesting that the + Frank-Starling reserve is essentially exhausted.}, + File = {komamura93.pdf:komamura93.pdf:PDF}, + ISSN = {0363-6135}, + Publisher = {American Physiological Society}, + timestamp = {2015/09/17} +} + +@Article{ konstam2011jacc, + Title = {Left ventricular remodeling in heart failure: current + concepts in clinical significance and assessment}, + Author = {Konstam, Marvin A and Kramer, Daniel G and Patel, Ayan R + and Maron, Martin S and Udelson, James E}, + Journal = {JACC: Cardiovascular Imaging}, + Year = {2011}, + Number = {1}, + Pages = {98--108}, + Volume = {4}, + File = {:konstam11.pdf:PDF}, + Publisher = {Journal of the American College of Cardiology}, + timestamp = {2014/09/17} +} + +@Article{ korakianitis-shi-06, + Title = {A concentrated parameter model for the human + cardiovascular system including heart valve dynamics and + atrioventricular interaction}, + Author = {Korakianitis, T. and Shi, Y.}, + Year = {2006}, + Journal = {Medical Engineering \& Physics}, + Volume = {28}, + Pages = {613--628} +} + +###Article{ korakianitis-shi-06, + Title = {A concentrated parameter model for the human + cardiovascular system including heart valve dynamics and + atrioventricular interaction}, + Author = {Korakianitis, T. and Shi, Y.}, + Year = {2006}, + Journal = {Medical Engineering \& Physics}, + Volume = {28}, + Pages = {613--628} +} + +@Article{ koutsourelakis2009accurate, + Title = {Accurate uncertainty quantification using inaccurate + computational models}, + Author = {Koutsourelakis, Phaedon-Stelios}, + Journal = {SIAM Journal on Scientific Computing}, + Volume = {31}, + Number = {5}, + Pages = {3274--3300}, + Year = {2009}, + Publisher = {SIAM} +} + +@Article{ kozlov-89, + Author = {Kozlov, S.}, + Journal = {Russian Math. Surveys}, + Pages = {79-120}, + Title = {Geometric aspects of homogenization}, + Volume = {40}, + Year = {1989} +} + +###Article{ kozlov-89, + Author = {Kozlov, S.}, + Journal = {Russian Math. Surveys}, + Pages = {79-120}, + Title = {Geometric aspects of homogenization}, + Volume = {40}, + Year = {1989} +} + +@Article{ krittian2012finite, + Title = {A finite-element approach to the direct computation of + relative cardiovascular pressure from time-resolved {MR} + velocity data}, + Author = {Krittian, Sebastian BS and Lamata, Pablo and Michler, + Christian and Nordsletten, David A and Bock, Jelena and + Bradley, Chris P and Pitcher, Alex and Kilner, Philip J and + Markl, Michael and Smith, Nic P}, + Journal = {Medical image analysis}, + Volume = {16}, + Number = {5}, + Pages = {1029--1037}, + Year = {2012}, + Publisher = {Elsevier} +} + +###Article{ krittian2012finite, + Title = {A finite-element approach to the direct computation of + relative cardiovascular pressure from time-resolved {MR} + velocity data}, + Author = {Krittian, Sebastian BS and Lamata, Pablo and Michler, + Christian and Nordsletten, David A and Bock, Jelena and + Bradley, Chris P and Pitcher, Alex and Kilner, Philip J and + Markl, Michael and Smith, Nic P}, + Journal = {Medical image analysis}, + Volume = {16}, + Number = {5}, + Pages = {1029--1037}, + Year = {2012}, + Publisher = {Elsevier} +} + +@Article{ krittian_finite-element_2012, + Title = {A Finite-Element Approach to the Direct Computation of + Relative Cardiovascular Pressure from Time-Resolved {{MR}} + Velocity Data}, + Volume = {16}, + ISSN = {1361-8415}, + URL = {http://www.sciencedirect.com/science/article/pii/S1361841512000497}, + DOI = {10.1016/j.media.2012.04.003}, + Abstract = {The evaluation of cardiovascular velocities, their changes + through the cardiac cycle and the consequent pressure + gradients has the capacity to improve understanding of + subject-specific blood flow in relation to adjacent soft + tissue movements. Magnetic resonance time-resolved 3D phase + contrast velocity acquisitions (4D flow) represent an + emerging technology capable of measuring the cyclic changes + of large scale, multi-directional, subject-specific blood + flow. A subsequent evaluation of pressure differences in + enclosed vascular compartments is a further step which is + currently not directly available from such data. The focus + of this work is to address this deficiency through the + development of a novel simulation workflow for the direct + computation of relative cardiovascular pressure fields. + Input information is provided by enhanced 4D flow data and + derived MR domain masking. The underlying methodology shows + numerical advantages in terms of robustness, global domain + composition, the isolation of local fluid compartments and + a treatment of boundary conditions. This approach is + demonstrated across a range of validation examples which + are compared with analytic solutions. Four subject-specific + test cases are subsequently run, showing good agreement + with previously published calculations of intra-vascular + pressure differences. The computational engine presented in + this work contributes to non-invasive access to relative + pressure fields, incorporates the effects of both blood + flow acceleration and viscous dissipation, and enables + enhanced evaluation of cardiovascular blood flow.}, + Number = {5}, + JournalTitle = {Medical Image Analysis}, + ShortJournal = {Medical Image Analysis}, + URLDate = {2016-10-08}, + Year = {2012-07}, + Pages = {1029-1037}, + Author = {Krittian, Sebastian B. S. and Lamata, Pablo and Michler, + Christian and Nordsletten, David A. and Bock, Jelena and + Bradley, Chris P. and Pitcher, Alex and Kilner, Philip J. + and Markl, Michael and Smith, Nic P.} +} + +@Article{ kroon2007jtb, + Title = {A model for saccular cerebral aneurysm growth by collagen + fibre remodelling }, + Author = {Martin Kroon and Gerhard A. Holzapfel}, + Journal = {Journal of Theoretical Biology }, + Year = {2007}, + Number = {4}, + Pages = {775 - 787}, + Volume = {247}, + Abstract = {The first structural model for saccular cerebral aneurysm + growth is proposed. It is assumed that the development of + the aneurysm is accompanied by a loss of the media, and + that only collagen fibres provide load-bearing capacity to + the aneurysm wall. The aneurysm is modelled as an + axisymmetric multi-layered membrane, exposed to an + inflation pressure. Each layer is characterized by an + orientation angle, which changes between different layers. + The collagen fibres and fibroblasts within a specific layer + are perfectly aligned. The growth and the morphological + changes of the aneurysm are accomplished by the turnover of + collagen. Fibroblasts are responsible for collagen + production, and the related deformations are assumed to + govern the collagen production rate. There are four key + parameters in the model: a normalized pressure, the number + of layers in the wall, an exponent in the collagen mass + production rate law, and the pre-stretch under which the + collagen is deposited. The influence of the model + parameters on the aneurysmal response is investigated, and + a stability analysis is performed. The model is able to + predict clinical observations and mechanical test results, + for example, in terms of predicted aneurysm size, shape, + wall stress and wall thickness. }, + DOI = {http://dx.doi.org/10.1016/j.jtbi.2007.03.009}, + File = {kroon07.pdf:kroon07.pdf:PDF}, + ISSN = {0022-5193}, + Keywords = {Aneurysm}, + timestamp = {2015/09/22}, + URL = {http://www.sciencedirect.com/science/article/pii/S0022519307001142} +} + +@Article{ kroon2009bmm, + Title = {Computational modeling of volumetric soft tissue growth: + application to the cardiac left ventricle}, + Author = {Kroon, Wilco and Delhaas, Tammo and Arts, Theo and + Bovendeerd, Peter}, + Journal = {Biomechanics and Modeling in Mechanobiology}, + Year = {2009}, + Number = {4}, + Pages = {301-309}, + Volume = {8}, + DOI = {10.1007/s10237-008-0136-z}, + File = {kroon09b.pdf:kroon09b.pdf:PDF}, + ISSN = {1617-7959}, + Keywords = {Cardiac mechanics; Remodeling; Adaptation; Finite element + method}, + Language = {English}, + Publisher = {Springer-Verlag}, + timestamp = {2015/09/23}, + URL = {http://dx.doi.org/10.1007/s10237-008-0136-z} +} + +@Article{ kroon2009jtb, + Title = {A theoretical model for fibroblast-controlled growth of + saccular cerebral aneurysms }, + Author = {Martin Kroon and Gerhard A. Holzapfel}, + Journal = {Journal of Theoretical Biology }, + Year = {2009}, + Number = {1}, + Pages = {73 - 83}, + Volume = {257}, + Abstract = {A new theoretical model for the growth of saccular + cerebral aneurysms is proposed by extending the recent + constitutive framework of Kroon and Holzapfel [2007a. A + model for saccular cerebral aneurysm growth by collagen + fibre remodelling. J. Theor. Biol. 247, 775?787]. The + continuous turnover of collagen is taken to be the driving + mechanism in aneurysmal growth. The collagen production + rate depends on the magnitude of the cyclic deformation of + fibroblasts, caused by the pulsating blood pressure during + the cardiac cycle. The volume density of fibroblasts in the + aneurysmal tissue is taken to be constant throughout the + growth process. The growth model is assessed by considering + the inflation of an axisymmetric membranous piece of + aneurysmal tissue, with material characteristics + representative of a cerebral aneurysm. The diastolic and + systolic states of the aneurysm are computed, together with + its load-free state. It turns out that the value of + collagen pre-stretch, that determines growth speed and + stability of the aneurysm, is of pivotal importance. The + model is able to predict aneurysms with typical berry-like + shapes observed clinically, and the predicted wall stresses + correlate well with the experimentally obtained ultimate + stresses of this type of tissue. The model predicts that + aneurysms should fail when reaching a size of about 1.2?3.6 + mm, which is smaller than what has been clinically + observed. With some refinements, the model may, however, be + used to predict future growth of diagnosed aneurysms. }, + DOI = {http://dx.doi.org/10.1016/j.jtbi.2008.10.021}, + File = {kroon09.pdf:kroon09.pdf:PDF}, + ISSN = {0022-5193}, + Keywords = {Aneurysm}, + timestamp = {2015/09/22}, + URL = {http://www.sciencedirect.com/science/article/pii/S0022519308005602} +} + +@Article{ kroon2009mia, + Title = {Computational analysis of the myocardial structure: + Adaptation of cardiac myofiber orientations through + deformation }, + Author = {Wilco Kroon and Tammo Delhaas and Peter Bovendeerd and + Theo Arts}, + Journal = {Medical Image Analysis }, + Year = {2009}, + Note = {Includes Special Section on Functional Imaging and + Modelling of the Heart }, + Number = {2}, + Pages = {346 - 353}, + Volume = {13}, + Abstract = {Deformation and structure of the cardiac wall can be + assessed non-invasively by imaging techniques such as + magnetic resonance imaging. Understanding the + (patho-)physiology that underlies the observed deformation + and structure is critical for clinical diagnosis. However, + much about the genesis of deformation and structure is + unknown. In the present computational model study, we + hypothesize that myofibers locally adapt their orientation + to achieve minimal fiber-cross fiber shear strain during + the cardiac cycle. This hypothesis was tested in a 3D + finite element model of left ventricular (LV) mechanics by + computation of tissue deformations and subsequent + adaptation of initial myofiber orientations towards those + in the deformed tissue. As a consequence of adaptation, + local tissue peak stress, strain during ejection and stroke + work density were all found to increase by at least 10%, as + well as to become 50% more homogeneous throughout the wall. + Global \{LV\} work (peak systolic pressure, stroke volume + and stroke work) increased significantly as well (>9%). + The model-predicted myofiber orientations were found to be + similar to those in experiments. To the best of our + knowledge the presented model is the first that is able to + simultaneously predict a realistic myocardial structure as + well as to account for the experimentally observed + homogeneity in local mechanics. }, + DOI = {http://dx.doi.org/10.1016/j.media.2008.06.015}, + File = {kroon09a.pdf:kroon09a.pdf:PDF}, + ISSN = {1361-8415}, + Keywords = {Cardiac mechanics}, + timestamp = {2015/09/22}, + URL = {http://www.sciencedirect.com/science/article/pii/S1361841508000686} +} + +@Article{ kroon2010jmps, + Title = {A continuum mechanics framework and a constitutive model + for remodelling of collagen gels and collagenous tissues }, + Author = {Martin Kroon}, + Journal = {Journal of the Mechanics and Physics of Solids }, + Year = {2010}, + Number = {6}, + Pages = {918 - 933}, + Volume = {58}, + Abstract = {Collagen is a very important protein of the human body and + is responsible for the structural stability of many body + components. Furthermore, collagen fibre networks are able + to grow and remodel themselves, which enables them to + adjust to varying physiological conditions. This + remodelling is accomplished by fibre-producing cells, such + as fibroblasts. The ability to adjust to new physiological + conditions is very important, for example in wound healing. + In the present paper, a theoretical framework for modelling + collagenous tissues and collagen gels is proposed. + Continuum mechanics is employed to describe the kinematics + of the collagen, and affine deformations of fibres are + assumed. Biological soft tissues can be approximated as + being hyperelastic, and the constitutive model for the + collagen fabric is therefore formulated in terms of a + strain energy function. This strain energy function + includes a density function that describes the distribution + of the collagen fibre orientation. The density function + evolves according to an evolution law, where fibres tend to + reorient towards the direction of maximum Cauchy stress. + The remodelling of the collagen network is also assumed to + include a pre-stretching of collagen fibres, accomplished + by fibroblasts. The theoretical framework is applied to + experiments performed on collagen gels, where gels were + exposed to remodelling under both biaxial and uniaxial + constraints. The proposed model was able to predict both + the resulting collagen distribution and the resulting + stress?strain relationships obtained for the remodelled + collagen gels. The influence of the most important model + parameters is demonstrated, and it appears that there is a + fairly unique set of model parameters that gives an optimal + fit to the experimental data. }, + DOI = {http://dx.doi.org/10.1016/j.jmps.2010.03.005}, + ISSN = {0022-5096}, + Keywords = {Collagen}, + timestamp = {2015/09/22}, + URL = {http://www.sciencedirect.com/science/article/pii/S0022509610000530} +} + +@Article{ kruzhkov-70, + Author = {Kruzhkov, S.}, + Journal = { Mat. Sbornik}, + Note = {Engl. Transl. {\em Math. USSR Sb.} {\bf 10} (1970), + 217--273}, + Pages = {228-255}, + Title = {First order quasilinear equations with several space + variables}, + Volume = {123}, + Year = {1970} +} + +###Article{ kruzhkov-70, + Author = {Kruzhkov, S.}, + Journal = { Mat. Sbornik}, + Note = {Engl. Transl. {\em Math. USSR Sb.} {\bf 10} (1970), + 217--273}, + Pages = {228-255}, + Title = {First order quasilinear equations with several space + variables}, + Volume = {123}, + Year = {1970} +} + +@Article{ ku_blood_1997, + Title = {Blood Flow in Arteries}, + Author = {Ku, David N.}, + Year = {1997}, + Volume = {29}, + Pages = {399--434}, + Journal = {Annu Rev Fluid Mech}, + Number = {1} +} + +###Article{ ku_blood_1997, + Title = {Blood Flow in Arteries}, + Volume = {29}, + URL = {http://www.annualreviews.org/doi/abs/10.1146/annurev.fluid.29.1.399}, + Number = {1}, + JournalTitle = {Annual review of fluid mechanics}, + URLDate = {2017-10-12}, + Year = {1997}, + Pages = {399--434}, + Author = {Ku, David N.} +} + +@Article{ kuethe1989physrev, + Title = {Measuring distributions of diffusivity in turbulent fluids + with magnetic-resonance imaging}, + Author = {Kuethe, Dean O.}, + Journal = {Physical Review A}, + Year = {1989}, + Month = oct, + Number = {8}, + Pages = {4542--4551}, + Volume = {40}, + Abstract = {This paper describes a method for measuring distributions + of turbulent diffusivity in less than an hour. The + measurement is rapid enough to aid in designing devices + that make use of the turbulent diffusion of mass, heat, or + momentum. It may be useful as a measurement of the degree + of turbulence in the blood of patients with cardiovascular + diseases. It consists of subtracting the natural logarithms + of the pixel values of a magnetic-resonance image of + turbulent fluid from those of stationary fluid. The pixel + values of the resulting image are multiplied by a constant + to yield diffusivities. The accuracy of the measurement is + within the range of diffusivities (1) upstream as far as + the speed of the fluid multiplied by the time TE between + exciting the spin system and recording the signal, (2) in + the direction of the gradient of diffusivity as far as TE + multiplied by 5 times the gradient of the diffusivity, and + (3) in the direction of the phase-encoding magnetic field + gradient as far as the negative of the component of + velocity in the phase-encoding direction multiplied by the + time between phase encoding and recording the signal. In a + 32{\texttimes}32-cm2 image of a jet of water with a nozzle + velocity of 4.5 m s-1 and Reynolds number of 18 000, made + with a TE of 15 ms, the distance of (1) ranged from 0 to + 6.7 cm, of (2) ranged from 0 to 0.3 cm, and of (3) ranged + from 0 to 0.4 cm. These distances are bounds; the actual + spatial misregistration was less. The signal-to-noise ratio + ranged from 10 to 15 for diffusivities from 0.02 to 0.7 cm2 + s-1. .AE}, + DOI = {10.1103/PhysRevA.40.4542}, + owner = {david}, + timestamp = {2015-05-12 15:34:08}, + URL = {http://link.aps.org/doi/10.1103/PhysRevA.40.4542}, + URLDate = {2015-05-12} +} + +@Article{ kung2011jmri, + Title = {The presence of two local myocardial sheet populations + confirmed by diffusion tensor MRI and histological + validation.}, + Author = {Kung, Geoffrey L. and Nguyen, Tom C. and Itoh, Aki and + Skare, Stefan and Ingels, Jr, Neil B and Miller, D Craig + and Ennis, Daniel B.}, + Journal = {J Magn Reson Imaging}, + Year = {2011}, + Month = {Nov}, + Number = {5}, + Pages = {1080--1091}, + Volume = {34}, + Abstract = {To establish the correspondence between the two + histologically observable and diffusion tensor MRI (DTMRI) + measurements of myolaminae orientation for the first time + and show that single myolaminar orientations observed in + local histology may result from histological artifact.DTMRI + was performed on six sheep left ventricles (LV), then + corresponding direct histological transmural measurements + were made within the anterobasal and lateral-equatorial LV. + Secondary and tertiary eigenvectors of the diffusion tensor + were compared with each of the two locally observable sheet + orientations from histology. Diffusion tensor invariants + were calculated to compare differences in microstructural + diffusive properties between histological locations with + one observable sheet population and two observable sheet + populations.Mean difference ± 1SD between DTMRI and + histology measured sheet angles was 8° ± 27°. Diffusion + tensor invariants showed no significant differences between + histological locations with one observable sheet population + and locations with two observable sheet populations.DTMRI + measurements of myolaminae orientations derived from the + secondary and tertiary eigenvectors correspond to each of + the two local myolaminae orientations observed in + histology. Two local sheet populations may exist throughout + LV myocardium, and one local sheet population observed in + histology may be a result of preparation artifact.}, + DOI = {10.1002/jmri.22725}, + Institution = {Department of Radiological Sciences, University of + California, Los Angeles, California 90024, USA.}, + Keywords = {Algorithms; Animals; Artifacts; Diffusion Magnetic + Resonance Imaging, methods; Heart Ventricles, pathology; + Image Processing, Computer-Assisted; Male; Models, + Anatomic; Models, Statistical; Myocardium, pathology; + Reproducibility of Results; Sheep}, + Language = {eng}, + medline-pst = {ppublish}, + owner = {stoeckc}, + pmid = {21932362}, + timestamp = {2015.07.24}, + URL = {http://dx.doi.org/10.1002/jmri.22725} +} + +@Article{ kung_predictive_2013, + Title = {Predictive Modeling of the Virtual {{Hemi}}-{{Fontan}} + Operation for Second Stage Single Ventricle Palliation: + {{Two}} Patient-Specific Cases}, + Volume = {46}, + ISSN = {0021-9290}, + URL = {http://www.sciencedirect.com/science/article/pii/S0021929012006306}, + DOI = {10.1016/j.jbiomech.2012.10.023}, + ShortTitle = {Predictive Modeling of the Virtual {{Hemi}}-{{Fontan}} + Operation for Second Stage Single Ventricle Palliation}, + Abstract = {Single ventricle hearts are congenital cardiovascular + defects in which the heart has only one functional pumping + chamber. The treatment for these conditions typically + requires a three-staged operative process where Stage 1 is + typically achieved by a shunt between the systemic and + pulmonary arteries, and Stage 2 by connecting the superior + venous return to the pulmonary circulation. Surgically, the + Stage 2 circulation can be achieved through a procedure + called the Hemi-Fontan, which reconstructs the right atrium + and pulmonary artery to allow for an enlarged confluence + with the superior vena cava. Based on pre-operative data + obtained from two patients prior to Stage 2 surgery, we + developed two patient-specific multi-scale computational + models, each including the 3D geometrical model of the + surgical junction constructed from magnetic resonance + imaging, and a closed-loop systemic lumped-parameter + network derived from clinical measurements. “Virtual” + Hemi-Fontan surgery was performed on the 3D model with + guidance from clinical surgeons, and a corresponding + multi-scale simulation predicts the patient's + post-operative hemodynamic and physiologic conditions. For + each patient, a post-operative active scenario with an + increase in the heart rate (HR) and a decrease in the + pulmonary and systemic vascular resistance (PVR and SVR) + was also performed. Results between the baseline and this + “active” state were compared to evaluate the + hemodynamic and physiologic implications of changing + conditions. Simulation results revealed a characteristic + swirling vortex in the Hemi-Fontan in both patients, with + flow hugging the wall along the SVC to Hemi-Fontan + confluence. One patient model had higher levels of + swirling, recirculation, and flow stagnation. However, in + both models, the power loss within the surgical junction + was less than 13\% of the total power loss in the pulmonary + circulation, and less than 2\% of the total ventricular + power. This implies little impact of the surgical junction + geometry on the SVC pressure, cardiac output, and other + systemic parameters. In contrast, varying HR, PVR, and SVR + led to significant changes in theses clinically relevant + global parameters. Adopting a work-flow of customized + virtual planning of the Hemi-Fontan procedure with + patient-specific data, this study demonstrates the ability + of multi-scale modeling to reproduce patient specific flow + conditions under differing physiological states. Results + demonstrate that the same operation performed in two + different patients can lead to different hemodynamic + characteristics, and that modeling can be used to uncover + physiologic changes associated with different clinical + conditions.}, + Number = {2}, + JournalTitle = {Journal of Biomechanics}, + ShortJournal = {Journal of Biomechanics}, + Series = {Special {{Issue}}: {{Biofluid Mechanics}}}, + URLDate = {2019-03-09}, + Year = {2013-01-18}, + Pages = {423-429}, + Author = {Kung, Ethan and Baretta, Alessia and Baker, Catriona and + Arbia, Gregory and Biglino, Giovanni and Corsini, Chiara + and Schievano, Silvia and Vignon-Clementel, Irene E. and + Dubini, Gabriele and Pennati, Giancarlo and Taylor, Andrew + and Dorfman, Adam and Hlavacek, Anthony M. and Marsden, + Alison L. and Hsia, Tain-Yen and Migliavacca, Francesco} +} + +@Article{ kunisch-volkwein-fluids-03, + jstor_articletype={research-article}, + Title = {Galerkin Proper Orthogonal Decomposition Methods for a + General Equation in Fluid Dynamics}, + Author = {Kunisch, K. and Volkwein, S.}, + Journal = {SIAM Journal on Numerical Analysis}, + jstor_issuetitle={}, + Volume = {40}, + Number = {2}, + jstor_formatteddate={2003}, + Pages = {pp. 492-515}, + ISSN = {00361429}, + Abstract = {Error estimates for Galerkin proper orthogonal + decomposition (POD) methods for nonlinear parabolic systems + arising in fluid dynamics are proved. For the time + integration the backward Euler scheme is considered. The + asymptotic estimates involve the singular values of the POD + snapshot set and the grid-structure of the time + discretization as well as the snapshot locations.}, + Language = {English}, + Year = {2003}, + Publisher = {Society for Industrial and Applied Mathematics}, + copyright = {Copyright © 2003 Society for Industrial and Applied + Mathematics} +} + +###Article{ kunisch-volkwein-fluids-03, + jstor_articletype={research-article}, + Title = {Galerkin Proper Orthogonal Decomposition Methods for a + General Equation in Fluid Dynamics}, + Author = {Kunisch, K. and Volkwein, S.}, + Journal = {SIAM Journal on Numerical Analysis}, + jstor_issuetitle={}, + Volume = {40}, + Number = {2}, + jstor_formatteddate={2003}, + Pages = {pp. 492-515}, + URL = {http://www.jstor.org/stable/4100966}, + ISSN = {00361429}, + Abstract = {Error estimates for Galerkin proper orthogonal + decomposition (POD) methods for nonlinear parabolic systems + arising in fluid dynamics are proved. For the time + integration the backward Euler scheme is considered. The + asymptotic estimates involve the singular values of the POD + snapshot set and the grid-structure of the time + discretization as well as the snapshot locations.}, + Language = {English}, + Year = {2003}, + Publisher = {Society for Industrial and Applied Mathematics}, + copyright = {Copyright © 2003 Society for Industrial and Applied + Mathematics} +} + +@Article{ kuttler-wall-08, + Author = {K\"uttler, U. and Wall, W.A.}, + Journal = {Comput. Mech.}, + Number = {1}, + Pages = {61--72}, + Title = {Fixed-point fluid-structure interaction solvers with + dynamic relaxation}, + Volume = {43}, + Year = {2008} +} + +###Article{ kuttler-wall-08, + Author = {K\"uttler, U. and Wall, W.A.}, + Journal = {Comput. Mech.}, + Number = {1}, + Pages = {61--72}, + Title = {Fixed-point fluid-structure interaction solvers with + dynamic relaxation}, + Volume = {43}, + Year = {2008} +} + +@Article{ kuwabara-59, + Author = {Kuwabara, S.}, + Journal = {J. Phys. Soc. Japan}, + Pages = {527-532}, + Title = {The force experienced by randomly distributed parallel + circilar cylinders or spheres in a viscous flow at small + Reynolds number}, + Volume = {14}, + Year = {1959} +} + +###Article{ kuwabara-59, + Author = {Kuwabara, S.}, + Journal = {J. Phys. Soc. Japan}, + Pages = {527-532}, + Title = {The force experienced by randomly distributed parallel + circilar cylinders or spheres in a viscous flow at small + Reynolds number}, + Volume = {14}, + Year = {1959} +} + +@Article{ labrosse-etal-09, + Author = {Labrosse, M.R. and Beller, C.J. and Mesana, T. and Veinot, + J.P.}, + Title = {Mechanical behavior of human aortas: Experiments, material + constants and 3-D finite element modeling including + residual stress.}, + Journal = {J Biomech}, + Volume = {42}, + Year = {2009}, + Number = {8}, + Pages = {996-1004}, + pubmedid = {19345356}, + ISSN = {1873-2380} +} + +###Article{ labrosse-etal-09, + Author = {Labrosse, M.R. and Beller, C.J. and Mesana, T. and Veinot, + J.P.}, + Title = {Mechanical behavior of human aortas: Experiments, material + constants and 3-D finite element modeling including + residual stress.}, + Journal = {J Biomech}, + Volume = {42}, + Year = {2009}, + Number = {8}, + Pages = {996-1004}, + URL = {http://www.biomedsearch.com/nih/Mechanical-behavior-human-aortas-Experiments/19345356.html}, + pubmedid = {19345356}, + ISSN = {1873-2380} +} + +@Article{ labrosse2006geometric, + Title = {Geometric modeling of functional trileaflet aortic valves: + development and clinical applications}, + Author = {Labrosse, M. and Beller, C. and Robicsek, F. and + Thubrikar, M.}, + Journal = {Journal of biomechanics}, + Volume = {39}, + Number = {14}, + Pages = {2665--2672}, + Year = {2006}, + Publisher = {Elsevier} +} + +@Article{ lacamera-ziegler-kozarek-92, + Author = {LaCamera, A.F. and Ziegler, D.P. and Kozarek, R.L.}, + Journal = {Light Metals}, + Pages = {1179-1186}, + Title = {Magnetohydrodynamics in the {Hall-H{\'e}roult} process, an + overview}, + Year = {1992} +} + +###Article{ lacamera-ziegler-kozarek-92, + Author = {LaCamera, A.F. and Ziegler, D.P. and Kozarek, R.L.}, + Journal = {Light Metals}, + Pages = {1179-1186}, + Title = {Magnetohydrodynamics in the {Hall-H{\'e}roult} process, an + overview}, + Year = {1992} +} + +@Article{ ladisa2011computational, + Title = {Computational simulations for aortic coarctation: + representative results from a sampling of patients.}, + Author = {Ladisa, J.F. and Alberto, F.C. and Vignon-Clementel, I.E. + and Jin, K.H. and Xiao, N. and Ellwein, L.M. and Chan, F.P. + and Feinstein, J.A. and Taylor, C.A. and others}, + Journal = {Journal of biomechanical engineering}, + Volume = {133}, + Number = {9}, + Pages = {091008}, + Year = {2011} +} + +###Article{ ladisa2011computational, + Title = {Computational simulations for aortic coarctation: + representative results from a sampling of patients.}, + Author = {Ladisa, J.F. and Alberto, F.C. and Vignon-Clementel, I.E. + and Jin, K.H. and Xiao, N. and Ellwein, L.M. and Chan, F.P. + and Feinstein, J.A. and Taylor, C.A. and others}, + Journal = {Journal of biomechanical engineering}, + Volume = {133}, + Number = {9}, + Pages = {091008}, + Year = {2011} +} + +@Book{ ladyzenskaya-68, + Author = {Ladyzenskaja, O.A. and Solonnikov, V.A. and Ural'ceva, + N.N.}, + Publisher = {American Mathematical Society}, + Series = {Translations of Mathematical Monographs}, + Title = {Linear and Quasilinear Equations of parabolic type}, + Volume = {23}, + Year = {1968} +} + +###Book{ ladyzenskaya-68, + Author = {Ladyzenskaja, O.A. and Solonnikov, V.A. and Ural'ceva, + N.N.}, + Publisher = {American Mathematical Society}, + Series = {Translations of Mathematical Monographs}, + Title = {Linear and Quasilinear Equations of parabolic type}, + Volume = {23}, + Year = {1968} +} + +@Article{ laflamme2002circ, + Title = {Evidence for Cardiomyocyte Repopulation by Extracardiac + Progenitors in Transplanted Human Hearts}, + Author = {Laflamme, Michael A. and Myerson, David and Saffitz, + Jeffrey E. and Murry, Charles E.}, + Journal = {Circulation Research}, + Year = {2002}, + Number = {6}, + Pages = {634-640}, + Volume = {90}, + Abstract = {Human myocardium has long been considered to have + essentially no intrinsic regenerative capacity. Recent + studies in rodent models, however, have suggested the + presence of an extracardiac stem cell population, perhaps + in bone marrow, that is capable of some reconstitution of + cardiomyocytes after injury. To determine whether similar + mechanisms exist in the human heart, we evaluated human + female allograft hearts transplanted into male patients. + The presence of Y chromosomes in cardiomyocytes would + indicate these cells arose from the recipient, rather than + the donor heart. We identified 5 male patients who had + retained a female heart at least 9 months before death and + necropsy. Remarkably, in each case, the transplanted heart + contained a minute but readily detectable fraction of Y + chromosome-positive cardiomyocytes. The mean percentage of + cardiomyocytes arising from the host was estimated to be + 0.04% with a median of 0.016%. Most Y-positive + cardiomyocytes were associated with regions of acute + rejection, suggesting such chimerism involves an injury + event. Furthermore, the sole patient whose immediate cause + of death was allograft rejection showed a much higher + percentage of host-derived cardiomyocytes, up to 29% in + local, 1-mm2 ?hot spots.? Thus, adult humans have + extracardiac progenitor cells capable of migrating to and + repopulating damaged myocardium, but this process occurs at + very low levels.}, + DOI = {10.1161/01.RES.0000014822.62629.EB}, + EPrint = {http://circres.ahajournals.org/content/90/6/634.full.pdf+html}, + File = {laflamme02.pdf:laflamme02.pdf:PDF}, + timestamp = {2015/09/11}, + URL = {http://circres.ahajournals.org/content/90/6/634.abstract} +} + +@Article{ laflamme2011nature, + Title = {Heart regeneration}, + Author = {Laflamme, Michael A and Murry, Charles E}, + Journal = {Nature}, + Year = {2011}, + Number = {7347}, + Pages = {326--335}, + Volume = {473}, + File = {laflamme11.pdf:laflamme11.pdf:PDF}, + Publisher = {Nature Publishing Group}, + timestamp = {2015/09/23} +} + +@Article{ lafortune2012, + Author = {Lafortune, P. and Ar\'is, R. and V\'azquez, M. and + Houzeaux, G.}, + Title = {Coupled electromechanical model of the heart: Parallel + finite element formulation}, + Journal = {International Journal for Numerical Methods in Biomedical + Engineering}, + Volume = {28}, + Number = {1}, + Publisher = {John Wiley & Sons, Ltd}, + ISSN = {2040-7947}, + DOI = {10.1002/cnm.1494}, + Pages = {72--86}, + Keywords = {cardiac mechanics, electrophysiology, parallelization, + finite element methods}, + Year = {2012} +} + +@Article{ lagana_2010, + Author = "Lagan\'a, K. and Balossino, R. and Migliavacca, F. and + Pennati, G. and Bove, E.~L. and de Leval, M.~R. and Dubini, + G.", + Title = "Multiscale modeling of the cardiovascular system: + application to the studyof pulmonaryand coronary perfusions + in the univentricular circulation", + Journal = "J. Biomech.", + Volume = "38", + Pages = "625--640", + Year = "2010" +} + +###Article{ lagana_2010, + Author = "Lagan\'a, K. and Balossino, R. and Migliavacca, F. and + Pennati, G. and Bove, E.~L. and de Leval, M.~R. and Dubini, + G.", + Title = "Multiscale modeling of the cardiovascular system: + application to the studyof pulmonaryand coronary perfusions + in the univentricular circulation", + Journal = "J. Biomech.", + Volume = "38", + Pages = "625--640", + Year = "2010" +} + +@Article{ lagree-99, + Author = {Lagr\'ee, P.-Y.}, + Journal = {Eur. Phys. J. AP}, + Pages = {153--163}, + Title = {An inverse technique to deduce the elasticity of a large + artery}, + Volume = {9}, + Year = {1999} +} + +###Article{ lagree-99, + Author = {Lagr\'ee, P.-Y.}, + Journal = {Eur. Phys. J. AP}, + Pages = {153--163}, + Title = {An inverse technique to deduce the elasticity of a large + artery}, + Volume = {9}, + Year = {1999} +} + +@Article{ lal_data_2017, + Title = {Data Assimilation for Identification of Cardiovascular + Network Characteristics}, + Volume = {33}, + Number = {5}, + JournalTitle = {International journal for numerical methods in biomedical + engineering}, + Year = {2017}, + Pages = {e2824}, + Author = {Lal, Rajnesh and Mohammadi, Bijan and Nicoud, Franck} +} + +@Article{ lamata2014aortic, + Title = {Aortic relative pressure components derived from + four-dimensional flow cardiovascular magnetic resonance}, + Author = {Lamata, Pablo and Pitcher, Alex and Krittian, Sebastian + and Nordsletten, David and Bissell, Malenka M and Cassar, + Thomas and Barker, Alex J and Markl, Michael and Neubauer, + Stefan and Smith, Nicolas P}, + Journal = {Magnetic resonance in medicine}, + Volume = {72}, + Number = {4}, + Pages = {1162--1169}, + Year = {2014}, + Publisher = {Wiley Online Library} +} + +###Article{ lamata2014aortic, + Title = {Aortic relative pressure components derived from + four-dimensional flow cardiovascular magnetic resonance}, + Author = {Lamata, Pablo and Pitcher, Alex and Krittian, Sebastian + and Nordsletten, David and Bissell, Malenka M and Cassar, + Thomas and Barker, Alex J and Markl, Michael and Neubauer, + Stefan and Smith, Nicolas P}, + Journal = {Magnetic resonance in medicine}, + Volume = {72}, + Number = {4}, + Pages = {1162--1169}, + Year = {2014}, + Publisher = {Wiley Online Library} +} + +@Article{ lancellotti2018outcomesas, + Title = {Outcomes of Patients With Asymptomatic Aortic Stenosis + Followed Up in Heart Valve Clinics}, + Author = {Lancellotti, Patrizio and Magne, Julien and Dulgheru, + Raluca and Clavel, Marie-Annick and Donal, Erwan and + Vannan, Mani A and Chambers, John and Rosenhek, Raphael and + Habib, Gilbert and Lloyd, Guy and others}, + Journal = {JAMA cardiology}, + Year = {2018}, + Note = {doi:10.1001/jamacardio.2018.3152} +} + +@Article{ landajuela2017fsibench, + Title = {Coupling schemes for the FSI forward prediction challenge: + comparative study and validation}, + Author = {Landajuela, Mikel and Vidrascu, Marina and Chapelle, + Dominique and Fern{\'a}ndez, Miguel A}, + Journal = {International journal for numerical methods in biomedical + engineering}, + Volume = {33}, + Number = {4}, + Pages = {e2813}, + Year = {2017}, + Publisher = {Wiley Online Library} +} + +@Book{ landau-lifschitz-6, + Author = {Landau, L. and Lifchitz, E.}, + Publisher = {Pergamon Press}, + Title = {Course of Theoretical Physics, volume 6}, + Year = {1984} +} + +###Book{ landau-lifschitz-6, + Author = {Landau, L. and Lifchitz, E.}, + Publisher = {Pergamon Press}, + Title = {Course of Theoretical Physics, volume 6}, + Year = {1984} +} + +@Article{ larson-higdon-87, + Author = {Larson, R.E. and Higdon, J.J.L.}, + code = {por12}, + Journal = {J. Fluid Mech.}, + Pages = {119-136}, + Title = {Microscopic flow near the surface of two-dimensional + porous media. Part2. Transverse flow}, + Volume = {178}, + Year = {1987} +} + +###Article{ larson-higdon-87, + Author = {Larson, R.E. and Higdon, J.J.L.}, + code = {por12}, + Journal = {J. Fluid Mech.}, + Pages = {119-136}, + Title = {Microscopic flow near the surface of two-dimensional + porous media. Part2. Transverse flow}, + Volume = {178}, + Year = {1987} +} + +@Article{ lasiecka-triggiani-03, + Author = {Lasiecka, I. and Triggiani, R.}, + date-added = {2011-09-09 16:18:04 +0200}, + date-modified = {2011-09-09 16:18:18 +0200}, + Journal = {Abstr. Appl. Anal.}, + Keywords = {EDP Control}, + Number = {19}, + Pages = {1061--1139}, + Title = {{$L\sb 2(\Sigma)$}-regularity of the boundary to boundary + operator {$B\sp \ast L$} for hyperbolic and {P}etrowski + {PDE}s}, + Year = {2003} +} + +###Article{ lasiecka-triggiani-03, + Author = {Lasiecka, I. and Triggiani, R.}, + date-added = {2011-09-09 16:18:04 +0200}, + date-modified = {2011-09-09 16:18:18 +0200}, + Journal = {Abstr. Appl. Anal.}, + Keywords = {EDP Control}, + Number = {19}, + Pages = {1061--1139}, + Title = {{$L\sb 2(\Sigma)$}-regularity of the boundary to boundary + operator {$B\sp \ast L$} for hyperbolic and {P}etrowski + {PDE}s}, + Year = {2003} +} + +@Article{ lassila_reduced_2013, + Title = {A Reduced Computational and Geometrical Framework for + Inverse Problems in Hemodynamics}, + Volume = {29}, + Number = {7}, + JournalTitle = {International journal for numerical methods in biomedical + engineering}, + Year = {2013}, + Pages = {741--776}, + Author = {Lassila, Toni and Manzoni, Andrea and Quarteroni, Alfio + and Rozza, Gianluigi} +} + +@Article{ laurent_cockcroft_vanbortel_boutouyrie_giannattasio_hayoz_pannier_vlachopoulos_wilkinson_struijker-boudier_2006, + Title = {Expert consensus document on arterial stiffness: + methodological issues and clinical applications.}, + Volume = {27}, + Number = {21}, + Journal = {European Heart Journal}, + Author = {Laurent, S. and Cockcroft, J. and Van Bortel, L. and + Boutouyrie, P. and Giannattasio, C. and Hayoz, D. and + Pannier, B. and Vlachopoulos, C. and Wilkinson, I. and + Struijker-Boudier, H.}, + Year = {2006}, + Pages = {2588--2605} +} + +###Article{ laurent_cockcroft_vanbortel_boutouyrie_giannattasio_hayoz_pannier_vlachopoulos_wilkinson_struijker-boudier_2006, + Title = {Expert consensus document on arterial stiffness: + methodological issues and clinical applications.}, + Volume = {27}, + URL = {http://www.ncbi.nlm.nih.gov/pubmed/17000623}, + Number = {21}, + Journal = {European Heart Journal}, + Author = {Laurent, S. and Cockcroft, J. and Van Bortel, L. and + Boutouyrie, P. and Giannattasio, C. and Hayoz, D. and + Pannier, B. and Vlachopoulos, C. and Wilkinson, I. and + Struijker-Boudier, H.}, + Year = {2006}, + Pages = {2588--2605} +} + +@Article{ layton-lee-peterson-02, + Author = {Layton, W. and Lee, H. K. and Peterson, J.}, + Journal = {Appl. Math. Comput.}, + Number = {1}, + Pages = {1--19}, + Title = {A defect-correction method for the incompressible + {N}avier-{S}tokes equations}, + Volume = {129}, + Year = {2002} +} + +###Article{ layton-lee-peterson-02, + Author = {Layton, W. and Lee, H. K. and Peterson, J.}, + Journal = {Appl. Math. Comput.}, + Number = {1}, + Pages = {1--19}, + Title = {A defect-correction method for the incompressible + {N}avier-{S}tokes equations}, + Volume = {129}, + Year = {2002} +} + +@InProceedings{ le-bris-98, + Author = {Le Bris, C.}, + BookTitle = {Proceedings of the 4th European Computational Fluid + Dynamics Conference ECCOMAS 98}, + Pages = {800--802}, + Publisher = {Wiler}, + Title = {Some theoretical and numerical issues related to the + multifluid magnetohydrodynamics equations}, + Year = {1998} +} + +###InProceedings{ le-bris-98, + Author = {Le Bris, C.}, + BookTitle = {Proceedings of the 4th European Computational Fluid + Dynamics Conference ECCOMAS 98}, + Pages = {800--802}, + Publisher = {Wiler}, + Title = {Some theoretical and numerical issues related to the + multifluid magnetohydrodynamics equations}, + Year = {1998} +} + +@Book{ le-tallec-00, + Author = {Le Tallec, P.}, + Publisher = {Ellipses}, + Title = {Introduction {\`a} la dynamique des structures}, + Year = {2000} +} + +###Book{ le-tallec-00, + Author = {Le Tallec, P.}, + Publisher = {Ellipses}, + Title = {Introduction {\`a} la dynamique des structures}, + Year = {2000} +} + +@InCollection{ le-tallec-94, + Author = {Le Tallec, P.}, + BookTitle = {Handbook of numerical analysis, Vol.\ III}, + Pages = {465--622}, + Publisher = {North-Holland}, + Title = {Numerical methods for nonlinear three-dimensional + elasticity}, + Year = {1994} +} + +###InCollection{ le-tallec-94, + Author = {Le Tallec, P.}, + BookTitle = {Handbook of numerical analysis, Vol.\ III}, + Pages = {465--622}, + Publisher = {North-Holland}, + Title = {Numerical methods for nonlinear three-dimensional + elasticity}, + Year = {1994} +} + +@Article{ le-tallec-mani-00, + Author = {Le Tallec, P. and Mani, S.}, + code = {fsi2}, + Journal = {Numer. Math.}, + Number = {2}, + Pages = {317--354}, + Title = {Numerical analysis of a linearised fluid-structure + interaction problem}, + Volume = {87}, + Year = {2000} +} + +###Article{ le-tallec-mani-00, + Author = {Le Tallec, P. and Mani, S.}, + code = {fsi2}, + Journal = {Numer. Math.}, + Number = {2}, + Pages = {317--354}, + Title = {Numerical analysis of a linearised fluid-structure + interaction problem}, + Volume = {87}, + Year = {2000} +} + +@Article{ le-tallec-mouro-01, + Author = {Le Tallec, P. and Mouro, J.}, + code = {fsi1}, + Journal = {Comput. Meth. Appl. Mech. Engrg.}, + Pages = {3039-3067}, + Title = {Fluid structure interaction with large structural + displacements}, + Volume = {190}, + Year = {2001} +} + +###Article{ le-tallec-mouro-01, + Author = {Le Tallec, P. and Mouro, J.}, + code = {fsi1}, + Journal = {Comput. Meth. Appl. Mech. Engrg.}, + Pages = {3039-3067}, + Title = {Fluid structure interaction with large structural + displacements}, + Volume = {190}, + Year = {2001} +} + +@Article{ lebihan1986radiology, + Title = {{MR} imaging of intravoxel incoherent motions: application + to diffusion and perfusion in neurologic disorders.}, + Author = {Le Bihan, Denis and Breton, Eric and Lallemand, Denis and + Grenier, Philippe and Cabanis, Emmanuel and Laval-Jeantet, + Maurice}, + Journal = {Radiology}, + Year = {1986}, + Number = {2}, + Pages = {401--407}, + Volume = {161}, + Keywords = {IVIM, brain} +} + +@Article{ lebihan1988radiology, + Title = {Separation of diffusion and perfusion in intravoxel + incoherent motion {MR} imaging.}, + Author = {Le Bihan, Denis and Breton, Eric and Lallemand, Denis and + Aubin, M. L. and Vignaud, J. and Laval-Jeantet, M.}, + Journal = {Radiology}, + Year = {1988}, + Number = {2}, + Pages = {497--505}, + Volume = {168}, + owner = {david}, + timestamp = {2015-04-21 20:18:07}, + URL = {http://pubs.rsna.org/doi/abs/10.1148/radiology.168.2.3393671}, + URLDate = {2015-04-21} +} + +@Article{ lee2015bmma, + Title = {A computational model that predicts reverse growth in + response to mechanical unloading}, + Author = {Lee, L.C. and Genet, M. and Acevedo-Bolton, G. and + Ordovas, K. and Guccione, J.M. and Kuhl, E.}, + Journal = {Biomechanics and Modeling in Mechanobiology}, + Year = {2015}, + Number = {2}, + Pages = {217-229}, + Volume = {14}, + DOI = {10.1007/s10237-014-0598-0}, + File = {lee15.pdf:lee15.pdf:PDF}, + ISSN = {1617-7959}, + Keywords = {Remodeling; Reverse remodeling; Growth; End-diastolic + pressure?volume relationship; Finite element method; + Magnetic resonance imaging}, + Language = {English}, + Publisher = {Springer Berlin Heidelberg}, + timestamp = {2014/07/29}, + URL = {http://dx.doi.org/10.1007/s10237-014-0598-0} +} + +@Article{ lee2015bmmb, + Title = {An integrated electromechanical-growth heart model for + simulating cardiac therapies}, + Author = {Lee, LikChuan and Sundnes, Joakim and Genet, Martin and + Wenk, JonathanF. and Wall, SamuelT.}, + Journal = {Biomechanics and Modeling in Mechanobiology}, + Year = {2015}, + Pages = {1-13}, + DOI = {10.1007/s10237-015-0723-8}, + File = {lee15a.pdf:lee15a.pdf:PDF}, + ISSN = {1617-7959}, + Keywords = {Finite element modeling; Growth and remodeling; Cardiac + electromechanics; Myocardial infarction; Bioinjection + therapy}, + Language = {English}, + Publisher = {Springer Berlin Heidelberg}, + timestamp = {2015/09/22}, + URL = {http://dx.doi.org/10.1007/s10237-015-0723-8} +} + +@Article{ lee_three-point_1995, + Title = {Three-{{Point Phase}}-{{Contrast Velocity Measurements}} + with {{Increased Velocity}}-to-{{Noise Ratio}}}, + Volume = {33}, + JournalTitle = {Magnetic Resonance in Medicine}, + Date = {1995}, + Pages = {122-128}, + Author = {Lee, Adrian and Pike, Bruce and Pelc, Norbert} +} + +@Article{ legrice1995, + Author = {LeGrice, I. J. and Smaill, B. H. and Chai, L. Z. and + Edgar, S. G. and Gavin, J. B. and Hunter, P. J.}, + Title = {Laminar structure of the heart: ventricular myocyte + arrangement and connective tissue architecture in the dog}, + Volume = {269}, + Number = {2}, + Pages = {H571-H582}, + Year = {1995}, + Abstract = {We have studied the three-dimensional arrangement of + ventricular muscle cells and the associated extracellular + connective tissue matrix in dog hearts. Four hearts were + potassium-arrested, excised, and perfusion-fixed at zero + transmural pressure. Full-thickness segments were cut from + the right and left ventricular walls at a series of + precisely located sites. Morphology was visualized + macroscopically and with scanning electron microscopy in 1) + transmural planes of section and 2) planes tangential to + the epicardial surface. The appearance of all specimens was + consistent with an ordered laminar arrangement of myocytes + with extensive cleavage planes between muscle layers. These + planes ran radially from endocardium toward epicardium in + transmural section and coincided with the local muscle + fiber orientation in tangential section. Stereological + techniques were used to quantify aspects of this + organization. There was no consistent variation in the + cellular organization of muscle layers (48.4 +/- 20.4 + microns thick and 4 +/- 2 myocytes across) transmurally or + in different ventricular regions (23 sites in 6 segments), + but there was significant transmural variation in the + coupling between adjacent layers. The number of branches + between layers decreased twofold from subepicardium to + midwall, whereas the length distribution of perimysial + collagen fibers connecting muscle layers was greatest in + the midwall. We conclude that ventricular myocardium is not + a uniformly branching continuum but a laminar hierarchy in + which it is possible to identify three axes of material + symmetry at any point.}, + Journal = {American Journal of Physiology - Heart and Circulatory + Physiology} +} + +@InCollection{ lekadir2011predictive, + Title = {Predictive modeling of cardiac fiber orientation using the + Knutsson mapping}, + Author = {Lekadir, Karim and Ghafaryasl, Babak and Mu{\~n}oz-Moreno, + Emma and Butakoff, Constantine and Hoogendoorn, Corn{\'e} + and Frangi, Alejandro F}, + BookTitle = {Medical Image Computing and Computer-Assisted + Intervention--MICCAI 2011}, + Pages = {50--57}, + Year = {2011}, + Publisher = {Springer} +} + +@Article{ lekadir2014statistical, + Title = {Statistical personalization of ventricular fiber + orientation using shape predictors}, + Author = {Lekadir, Karim and Hoogendoorn, Corn{\'e} and Pereanez, + Marco and Alb{\`a}, X{\`e}nia and Pashaei, Ali and Frangi, + Alejandro F}, + Journal = {Medical Imaging, IEEE Transactions on}, + Volume = {33}, + Number = {4}, + Pages = {882--890}, + Year = {2014}, + Publisher = {IEEE} +} + +@Article{ lekadir2015media, + Title = {Statistically-driven 3D fiber reconstruction and denoising + from multi-slice cardiac DTI using a Markov random field + model}, + Author = {Lekadir, Karim and Lange, Matthias and Zimmer, Veronika A + and Hoogendoorn, Corn{\'e} and Frangi, Alejandro F}, + Journal = {Medical Image Analysis}, + Year = {2015}, + Note = {In press}, + Keywords = {DTI, DMRI, statistical, denoising, Markov}, + Publisher = {Elsevier} +} + +@Article{ lemke2011mri, + Title = {Toward an optimal distribution of b values for intravoxel + incoherent motion imaging}, + Author = {Lemke, Andreas and Stieltjes, Bram and Schad, Lothar R. + and Laun, Frederik B.}, + Journal = {Magnetic Resonance Imaging}, + Year = {2011}, + Month = {Jul}, + Number = {6}, + Pages = {766--776}, + Volume = {29}, + DOI = {10.1016/j.mri.2011.03.004}, + File = {:Lemke2011MRI.pdf:PDF}, + ISSN = {0730-725X}, + Publisher = {Elsevier BV}, + URL = {http://dx.doi.org/10.1016/j.mri.2011.03.004} +} + +@InCollection{ leone-gresho-84, + Author = {Leone, J.M. and Gresho, P.M.}, + Pages = {667-683}, + Publisher = {Springer-Verlag}, + Title = {Another attempt to overcome the bent element blues}, + Year = {1984} +} + +###InCollection{ leone-gresho-84, + Author = {Leone, J.M. and Gresho, P.M.}, + BookTitle = {5th international conference on finite element methods in + water ressources, {Burlington}}, + Pages = {667-683}, + Publisher = {Springer-Verlag}, + Title = {Another attempt to overcome the bent element blues}, + Year = {1984} +} + +@Article{ lesoinne-farhat-95, + Author = {Lesoinne, M. and Farhat, C.}, + Journal = {Computer Methods in Applied Mechanics and Engineering}, + Pages = {71-90}, + Title = {Geometric Conservation Laws for Flow Problems with Moving + Boundaries and Deformable Meshes and Their Impact on + Aeroelastic Computations}, + Volume = {134}, + Year = {1996} +} + +###Article{ lesoinne-farhat-95, + Author = {Lesoinne, M. and Farhat, C.}, + Journal = {Computer Methods in Applied Mechanics and Engineering}, + Pages = {71-90}, + Title = {Geometric Conservation Laws for Flow Problems with Moving + Boundaries and Deformable Meshes and Their Impact on + Aeroelastic Computations}, + Volume = {134}, + Year = {1996} +} + +@Article{ lesoinne-farhat-98, + Author = {Lesoinne, M. and Farhat, C.}, + code = {fsi 19}, + Journal = {AIAA Journal}, + Number = {9}, + Pages = {1754-1757}, + Title = {Higher-order subiteration-free staggered algorithm for + nonlinear transient aeroelastic problems}, + Volume = {36}, + Year = {1998} +} + +###Article{ lesoinne-farhat-98, + Author = {Lesoinne, M. and Farhat, C.}, + code = {fsi 19}, + Journal = {AIAA Journal}, + Number = {9}, + Pages = {1754-1757}, + Title = {Higher-order subiteration-free staggered algorithm for + nonlinear transient aeroelastic problems}, + Volume = {36}, + Year = {1998} +} + +@Article{ leuprecht-perktold-01, + Author = {Leuprecht, A. and Perktold, K.}, + Journal = {Computer Methods in Biomechanics and Biomedical + Engineering}, + Note = {(in press)}, + Title = {Numerical study on viscoelastic blood flow in large + arteries}, + Year = {2001} +} + +###Article{ leuprecht-perktold-01, + Author = {Leuprecht, A. and Perktold, K.}, + Journal = {Computer Methods in Biomechanics and Biomedical + Engineering}, + Note = {(in press)}, + Title = {Numerical study on viscoelastic blood flow in large + arteries}, + Year = {2001} +} + +@Book{ levitt2008spindynnmr, + Title = {Spin Dynamics: Basics of Nuclear Magnetic Resonance}, + Author = {Levitt, Malcolm H.}, + Publisher = {John Wiley \& Sons}, + Year = {2008}, + Address = {Chichester}, + Edition = {2}, + owner = {david}, + timestamp = {2015-05-06 19:42:35} +} + +@Article{ levy-83, + Annote = {darcy, brinkman, perturbation}, + Author = {Levy, T.}, + code = {por1}, + Journal = {Int. J. Engng. Sci.}, + Number = {1}, + Pages = {11-23}, + Title = {Fluid flow through an array of fixed particles}, + Volume = {21}, + Year = {1983} +} + +###Article{ levy-83, + Annote = {darcy, brinkman, perturbation}, + Author = {Levy, T.}, + code = {por1}, + Journal = {Int. J. Engng. Sci.}, + Number = {1}, + Pages = {11-23}, + Title = {Fluid flow through an array of fixed particles}, + Volume = {21}, + Year = {1983} +} + +@Article{ levy-90, + Author = {Levy, T.}, + code = {por2}, + Journal = {Eur. J. Mech., B/Fluids}, + Number = {4}, + Pages = {309-327}, + Title = {Filtration in a porous fissured rock: influence of the + fissures connexity}, + Volume = {9}, + Year = {1990} +} + +###Article{ levy-90, + Author = {Levy, T.}, + code = {por2}, + Journal = {Eur. J. Mech., B/Fluids}, + Number = {4}, + Pages = {309-327}, + Title = {Filtration in a porous fissured rock: influence of the + fissures connexity}, + URL = {darcy}, + Volume = {9}, + Year = {1990}, + bdsk-url-1 = {darcy} +} + +@Article{ li2013prevalence, + Title = {Prevalence and trends of the abdominal aortic aneurysms + epidemic in general population-a meta-analysis}, + Author = {Li, Xi and Zhao, Ge and Zhang, Jian and Duan, Zhiquan and + Xin, Shijie}, + Journal = {PLoS One}, + Volume = {8}, + Number = {12}, + Pages = {e81260}, + Year = {2013}, + Publisher = {Public Library of Science} +} + +@Article{ lighthill_displacement_1958, + langid = {english}, + Title = {On Displacement Thickness}, + Volume = {4}, + ISSN = {0022-1120, 1469-7645}, + URL = {http://www.journals.cambridge.org/abstract_S0022112058000525}, + DOI = {10.1017/S0022112058000525}, + Number = {04}, + JournalTitle = {Journal of Fluid Mechanics}, + URLDate = {2019-08-24}, + Date = {1958-08}, + Pages = {383}, + Author = {Lighthill, M. J.} +} + +@Article{ linke_pressure-robustness_2016, + Title = {Pressure-Robustness and Discrete {{Helmholtz}} Projectors + in Mixed Finite Element Methods for the Incompressible + {{Navier}}\textendash{{Stokes}} Equations}, + Author = {Linke, A. and Merdon, C.}, + Year = {2016}, + Month = nov, + Volume = {311}, + Pages = {304--326}, + ISSN = {0045-7825}, + DOI = {10.1016/j.cma.2016.08.018}, + Abstract = {Recently, it was understood how to repair a certain + L2-orthogonality of discretely divergence-free vector + fields and gradient fields such that the velocity error of + inf\textendash{}sup stable discretizations for the + incompressible Stokes equations becomes + pressure-independent. These new `pressure-robust' Stokes + discretizations deliver a small velocity error, whenever + the continuous velocity field can be well approximated on a + given grid. On the contrary, classical inf\textendash{}sup + stable Stokes discretizations can guarantee a small + velocity error only when both the velocity and the pressure + field can be approximated well, simultaneously. In this + contribution, `pressure-robustness' is extended to the + time-dependent Navier\textendash{}Stokes equations. In + particular, steady and time-dependent potential flows are + shown to build an entire class of benchmarks, where + pressure-robust discretizations can outperform classical + approaches significantly. Speedups will be explained by a + new theoretical concept, the `discrete Helmholtz projector' + of an inf\textendash{}sup stable discretization. Moreover, + different discrete nonlinear convection terms are + discussed, and skew-symmetric pressure-robust + discretizations are proposed.}, + Journal = {Computer Methods in Applied Mechanics and Engineering} +} + +@Book{ lion-69, + Author = {Lions, J.-L.}, + Publisher = {Dunod}, + Title = {Quelques m{\'e}thodes de r{\'e}solution des probl{\`e}mes + aux limites non lin{\'e}aires}, + Year = {1969} +} + +###Book{ lion-69, + Author = {Lions, J.-L.}, + Publisher = {Dunod}, + Title = {Quelques m{\'e}thodes de r{\'e}solution des probl{\`e}mes + aux limites non lin{\'e}aires}, + Year = {1969} +} + +@Book{ lions-96, + Address = {Oxford}, + Author = {Lions, P.-L.}, + Publisher = {{Oxford University Press}}, + Title = {Mathematical {Topics} in {Fluid} {Mechanics}. {Vol. 1 : + incompressible models}}, + Year = {1996} +} + +###Book{ lions-96, + Address = {Oxford}, + Author = {Lions, P.-L.}, + Publisher = {{Oxford University Press}}, + Title = {Mathematical {Topics} in {Fluid} {Mechanics}. {Vol. 1 : + incompressible models}}, + Year = {1996} +} + +@Article{ lions-maday-turinici-01, + Author = {Lions, Jacques-Louis and Maday, Yvon and Turinici, + Gabriel}, + fjournal = {Comptes Rendus de l'Acad{\'e}mie des Sciences. S{\'e}rie + I. Math{\'e}matique}, + Journal = {C. R. Acad. Sci. Paris S{\'e}r. I Math.}, + Number = {7}, + Pages = {661--668}, + Title = {R{\'e}solution d'{EDP} par un sch{\'e}ma en temps + ``parar{\'e}el''}, + Volume = {332}, + Year = {2001} +} + +###Article{ lions-maday-turinici-01, + Author = {Lions, Jacques-Louis and Maday, Yvon and Turinici, + Gabriel}, + fjournal = {Comptes Rendus de l'Acad{\'e}mie des Sciences. S{\'e}rie + I. Math{\'e}matique}, + Journal = {C. R. Acad. Sci. Paris S{\'e}r. I Math.}, + Number = {7}, + Pages = {661--668}, + Title = {R{\'e}solution d'{EDP} par un sch{\'e}ma en temps + ``parar{\'e}el''}, + Volume = {332}, + Year = {2001} +} + +@Book{ lions-magenes-68, + Author = {Lions, J.-L. and Magenes, E.}, + Publisher = {Dunod}, + Title = {Probl{\`e}mes aux limites non homog{\`e}nes et + applications}, + Year = {1968} +} + +###Book{ lions-magenes-68, + Author = {Lions, J.-L. and Magenes, E.}, + Publisher = {Dunod}, + Title = {Probl{\`e}mes aux limites non homog{\`e}nes et + applications}, + Year = {1968} +} + +@Article{ lions-perthame-souganidis-96, + Author = {Lions, P.-L. and Perthame, B. and Souganidis, P. E.}, + Journal = {Comm. Pure Appl. Math.}, + Number = {6}, + Pages = {599--638}, + Title = {Existence and stability of entropy solutions for the + hyperbolic systems of isentropic gas dynamics in {E}ulerian + and {L}agrangian coordinates}, + Volume = {49}, + Year = {1996} +} + +###Article{ lions-perthame-souganidis-96, + Author = {Lions, P.-L. and Perthame, B. and Souganidis, P. E.}, + Journal = {Comm. Pure Appl. Math.}, + Number = {6}, + Pages = {599--638}, + Title = {Existence and stability of entropy solutions for the + hyperbolic systems of isentropic gas dynamics in {E}ulerian + and {L}agrangian coordinates}, + Volume = {49}, + Year = {1996} +} + +@Article{ liu_effect_2011, + langid = {english}, + Title = {Effect of Non-{{Newtonian}} and Pulsatile Blood Flow on + Mass Transport in the Human Aorta}, + Volume = {44}, + ISSN = {00219290}, + URL = {https://linkinghub.elsevier.com/retrieve/pii/S0021929011000558}, + DOI = {10.1016/j.jbiomech.2011.01.024}, + Number = {6}, + JournalTitle = {Journal of Biomechanics}, + URLDate = {2019-02-13}, + Year = {2011-04}, + Pages = {1123-1131}, + Author = {Liu, Xiao and Fan, Yubo and Deng, Xiaoyan and Zhan, Fan} +} + +@Article{ loerakker2014bmm, + Title = {A physically motivated constitutive model for + cell-mediated compaction and collagen remodeling in soft + tissues}, + Author = {Loerakker, Sandra and Obbink-Huizer, Christine and + Baaijens, FrankP.T.}, + Journal = {Biomechanics and Modeling in Mechanobiology}, + Year = {2014}, + Number = {5}, + Pages = {985-1001}, + Volume = {13}, + DOI = {10.1007/s10237-013-0549-1}, + ISSN = {1617-7959}, + Keywords = {Finite element modeling; Actin stress fibers; Collagen + remodeling; Prestress}, + Language = {English}, + Publisher = {Springer Berlin Heidelberg}, + timestamp = {2015/09/23}, + URL = {http://dx.doi.org/10.1007/s10237-013-0549-1} +} + +@Book{ logan-01, + Author = {Logan, J. D.}, + Publisher = {Springer-Verlag}, + Title = {Transport modeling in hydrogeochemical systems}, + Year = {2001} +} + +###Book{ logan-01, + Author = {Logan, J. D.}, + Publisher = {Springer-Verlag}, + Title = {Transport modeling in hydrogeochemical systems}, + Year = {2001} +} + +@Article{ logan-jewett-arnold-95, + Author = {Logan, B.E. and Jewett, D.G. and Arnold, R.G. and Bouwer, + E.J. and O'Melia, C.R.}, + code = {por25}, + Journal = {J. Environ. Eng.}, + Pages = {869-873}, + Title = {Clarification of clean-bed filtration models}, + Volume = {121}, + Year = {1995} +} + +###Article{ logan-jewett-arnold-95, + Author = {Logan, B.E. and Jewett, D.G. and Arnold, R.G. and Bouwer, + E.J. and O'Melia, C.R.}, + code = {por25}, + Journal = {J. Environ. Eng.}, + Pages = {869-873}, + Title = {Clarification of clean-bed filtration models}, + Volume = {121}, + Year = {1995} +} + +@InProceedings{ lombaert-etal-11d, + Author = {Lombaert, Herve and Peyrat, Jean-Marc and Croisille, + Pierre and Rapacchi, Stanislas and Fanton, Laurent and + Clarysse, Patrick and Delingette, Herve and Nicholas, + Ayache}, + Title = {Statistical Analysis of the Human Cardiac Fiber + Architecture from DT-MRI}, + BookTitle = {Proceedings of the 5th International Conference on + Functional Imaging and Modeling of the Heart}, + Series = {FIMH 2011, LNCS 6666}, + Year = {2011}, + ISBN = {}, + Location = {New York, USA}, + Pages = {171--179}, + numpages = {9}, + Publisher = {Springer-Verlag}, + Address = {Berlin, Heidelberg} +} + +@Article{ lombaert2012human, + Title = {Human atlas of the cardiac fiber architecture: study on a + healthy population}, + Author = {Lombaert, H. and Peyrat, J. and Croisille, P. and + Rapacchi, S. and Fanton, L. and Cheriet, F. and Clarysse, + P. and Magnin, I. and Delingette, H. and Ayache, N.}, + Journal = {{IEEE Transactions on Medical Imaging}}, + Volume = {31}, + Number = {7}, + Pages = {1436--1447}, + Year = {2012}, + Publisher = {IEEE} +} + +@InCollection{ lombaert2013joint, + Title = {Joint statistics on cardiac shape and fiber architecture}, + Author = {Lombaert, Herv{\'e} and Peyrat, Jean-Marc}, + BookTitle = {Medical Image Computing and Computer-Assisted + Intervention--MICCAI 2013}, + Pages = {492--500}, + Year = {2013}, + Publisher = {Springer} +} + +@Article{ lombardi_inverse_2014, + Title = {Inverse Problems in {{1D}} Hemodynamics on Systemic + Networks: A Sequential Approach}, + Volume = {30}, + ShortTitle = {Inverse Problems in {{1D}} Hemodynamics on Systemic + Networks}, + Number = {2}, + JournalTitle = {International journal for numerical methods in biomedical + engineering}, + Year = {2014}, + Pages = {160--179}, + Author = {Lombardi, Damiano} +} + +@Article{ lorell2000circ, + Title = {Left Ventricular Hypertrophy: Pathogenesis, Detection, and + Prognosis}, + Author = {Lorell, Beverly H. and Carabello, Blase A.}, + Journal = {Circulation}, + Year = {2000}, + Number = {4}, + Pages = {470-479}, + Volume = {102}, + comments = {How Is Mechanical Information Transduced to Cardiac + Growth?}, + DOI = {10.1161/01.CIR.102.4.470}, + EPrint = {http://circ.ahajournals.org/content/102/4/470.full.pdf+html}, + File = {lorell00.pdf:lorell00.pdf:PDF}, + timestamp = {2015/09/14}, + URL = {http://circ.ahajournals.org/content/102/4/470.short} +} + +@Article{ lorenz_closed_2012, + Title = {Closed Circuit {{MR}} Compatible Pulsatile Pump System + Using a Ventricular Assist Device and Pressure Control + Unit}, + Author = {Lorenz, R. and Benk, C. and Bock, J. and Stalder, A. F. + and Korvink, J. G. and Hennig, J. and Markl, M.}, + Year = {2012}, + Volume = {67}, + Pages = {258--268}, + Journal = {Magnetic resonance in medicine}, + Number = {1} +} + +@Article{ lowes2002nejm, + Title = {Myocardial Gene Expression in Dilated Cardiomyopathy + Treated with Beta-Blocking Agents}, + Author = {Lowes, Brian D. and Gilbert, Edward M. and Abraham, + William T. and Minobe, Wayne A. and Larrabee, Patti and + Ferguson, Debra and Wolfel, Eugene E. and Lindenfeld, JoAnn + and Tsvetkova, Tatiana and Robertson, Alastair D. and + Quaife, Robert A. and Bristow, Michael R.}, + Journal = {New England Journal of Medicine}, + Year = {2002}, + Note = {PMID: 11986409}, + Number = {18}, + Pages = {1357-1365}, + Volume = {346}, + DOI = {10.1056/NEJMoa012630}, + EPrint = {http://dx.doi.org/10.1056/NEJMoa012630}, + File = {lowes02.pdf:lowes02.pdf:PDF}, + timestamp = {2015/09/14}, + URL = {http://dx.doi.org/10.1056/NEJMoa012630} +} + +@Article{ luenberger-71, + Author = {Luenberger, D. G.}, + date-added = {2009-03-10 11:59:23 -0700}, + date-modified = {2009-03-10 11:59:32 -0700}, + Journal = {IEEE Transactions on Automatic Control}, + Pages = {596--602}, + Title = {An introduction to observers}, + Volume = {16}, + Year = {1971} +} + +###Article{ luenberger-71, + Author = {Luenberger, D. G.}, + date-added = {2009-03-10 11:59:23 -0700}, + date-modified = {2009-03-10 11:59:32 -0700}, + Journal = {IEEE Transactions on Automatic Control}, + Pages = {596--602}, + Title = {An introduction to observers}, + Volume = {16}, + Year = {1971} +} + +@Article{ ma-lee-wu-92, + Author = {Ma, X. and Lee, G.C. and Wu, S.G.}, + code = {fsi13}, + Journal = {Transactions of the ASME}, + Pages = {490-496}, + Title = {Numerical simulation for the propagation of nonlinear + pulsatile waves in arteries}, + Volume = {114}, + Year = {1992} +} + +###Article{ ma-lee-wu-92, + Author = {Ma, X. and Lee, G.C. and Wu, S.G.}, + code = {fsi13}, + Journal = {Transactions of the ASME}, + Pages = {490-496}, + Title = {Numerical simulation for the propagation of nonlinear + pulsatile waves in arteries}, + Volume = {114}, + Year = {1992} +} + +@InCollection{ maday-09, + Author = {Maday, Y.}, + Title = {Analysis of coupled models for fluid-structure interaction + of internal flows}, + BookTitle = {Cardiovascular mathematics}, + Series = {MS\&A. Model. Simul. Appl.}, + Volume = {1}, + Pages = {279--306}, + Publisher = {Springer}, + Year = {2009} +} + +###InCollection{ maday-09, + Author = {Maday, Y.}, + Title = {Analysis of coupled models for fluid-structure interaction + of internal flows}, + BookTitle = {Cardiovascular mathematics}, + Series = {MS\&A. Model. Simul. Appl.}, + Volume = {1}, + Pages = {279--306}, + Publisher = {Springer}, + Year = {2009} +} + +@Article{ maier2012ijnmbe, + Title = {Correlation of biomechanics to tissue reaction in aortic + aneurysms assessed by finite elements and + [18F]--fluorodeoxyglucose--PET/CT}, + Author = {Maier, Andreas and Essler, Markus and Gee, Michael W and + Eckstein, Hans-Henning and Wall, Wolfgang A and Reeps, + Christian}, + Journal = {International Journal for Numerical Methods in Biomedical + Engineering}, + Volume = {28}, + Number = {4}, + Pages = {456--471}, + Year = {2012}, + Publisher = {Wiley Online Library} +} + +@PhdThesis{ maillard-92, + Annote = {mhd, aluminium, stability}, + Author = {Maillard, P.}, + code = {mhd36}, + School = {Ecole Polytechnique F{\'e}d{\'e}rale de Lausanne}, + Title = {Sur la stabilit{\'e} magn{\'e}tohydrodynamique d'une + cellule de H{\'e}roult de longueur infinie}, + Year = {1992} +} + +###PhdThesis{ maillard-92, + Annote = {mhd, aluminium, stability}, + Author = {Maillard, P.}, + code = {mhd36}, + School = {Ecole Polytechnique F{\'e}d{\'e}rale de Lausanne}, + Title = {Sur la stabilit{\'e} magn{\'e}tohydrodynamique d'une + cellule de H{\'e}roult de longueur infinie}, + Year = {1992} +} + +@Article{ maillard-romerio-96, + Author = {Maillard, P. and Romerio, M. V.}, + Journal = {Journal of Computational and Applied Mathematics}, + Pages = {47-65}, + Title = {A stability criterion for an infinitely long + {Hall-H{\'e}roult} cell}, + Volume = {71}, + Year = {1996} +} + +###Article{ maillard-romerio-96, + Author = {Maillard, P. and Romerio, M. V.}, + Journal = {Journal of Computational and Applied Mathematics}, + Pages = {47-65}, + Title = {A stability criterion for an infinitely long + {Hall-H{\'e}roult} cell}, + Volume = {71}, + Year = {1996} +} + +@Article{ malossi-blanco-deparis-quarteroni-11, + Author = {Malossi, A. Cristiano I. and Blanco, Pablo J. and Deparis, + Simone and Quarteroni, Alfio}, + Title = {Algorithms for the partitioned solution of weakly coupled + fluid models for cardiovascular flows}, + Journal = {International Journal for Numerical Methods in Biomedical + Engineering}, + Volume = {27}, + Number = {12}, + Publisher = {John Wiley & Sons, Ltd}, + ISSN = {2040-7947}, + DOI = {10.1002/cnm.1457}, + Pages = {2035--2057}, + Keywords = {domain decomposition, parallel algorithms, Navier–Stokes + equations, geometrical multiscale, Newton method, + haemodynamics}, + Year = {2011}, + Abstract = {} +} + +###Article{ malossi-blanco-deparis-quarteroni-11, + Author = {Malossi, A. Cristiano I. and Blanco, Pablo J. and Deparis, + Simone and Quarteroni, Alfio}, + Title = {Algorithms for the partitioned solution of weakly coupled + fluid models for cardiovascular flows}, + Journal = {International Journal for Numerical Methods in Biomedical + Engineering}, + Volume = {27}, + Number = {12}, + Publisher = {John Wiley & Sons, Ltd}, + ISSN = {2040-7947}, + URL = {http://dx.doi.org/10.1002/cnm.1457}, + DOI = {10.1002/cnm.1457}, + Pages = {2035--2057}, + Keywords = {domain decomposition, parallel algorithms, Navier–Stokes + equations, geometrical multiscale, Newton method, + haemodynamics}, + Year = {2011}, + Abstract = {} +} + +@Article{ marcati-96, + Author = {Marcati, P.}, + Journal = {Diff. and Int. Eq.}, + Number = {4}, + Pages = {827-848}, + Title = {Weak solutions to a nonlinear partial differential + equation of mixed type}, + Volume = {9}, + Year = {1996} +} + +###Article{ marcati-96, + Author = {Marcati, P.}, + Journal = {Diff. and Int. Eq.}, + Number = {4}, + Pages = {827-848}, + Title = {Weak solutions to a nonlinear partial differential + equation of mixed type}, + Volume = {9}, + Year = {1996} +} + +@Article{ mariappan-etal-10, + Author = {Mariappan, Yogesh K. and Glaser, Kevin J. and Ehman, + Richard L.}, + Title = {Magnetic resonance elastography: A review}, + Journal = {Clinical Anatomy}, + Volume = {23}, + Number = {5}, + Publisher = {Wiley Subscription Services, Inc., A Wiley Company}, + ISSN = {1098-2353}, + DOI = {10.1002/ca.21006}, + Pages = {497--511}, + Keywords = {elasticity imaging, palpation, mechanical properties, + shear stiffness}, + Year = {2010} +} + +###Article{ mariappan-etal-10, + Author = {Mariappan, Yogesh K. and Glaser, Kevin J. and Ehman, + Richard L.}, + Title = {Magnetic resonance elastography: A review}, + Journal = {Clinical Anatomy}, + Volume = {23}, + Number = {5}, + Publisher = {Wiley Subscription Services, Inc., A Wiley Company}, + ISSN = {1098-2353}, + URL = {http://dx.doi.org/10.1002/ca.21006}, + DOI = {10.1002/ca.21006}, + Pages = {497--511}, + Keywords = {elasticity imaging, palpation, mechanical properties, + shear stiffness}, + Year = {2010} +} + +@Article{ markl2003jmri, + Title = {Time-resolved three-dimensional phase-contrast MRI.}, + Author = {Markl, Michael and Chan, Frandics P. and Alley, Marcus T. + and Wedding, Kris L. and Draney, Mary T. and Elkins, Chris + J. and Parker, David W. and Wicker, Ryan and Taylor, + Charles A. and Herfkens, Robert J. and Pelc, Norbert J.}, + Journal = {J Magn Reson Imaging}, + Year = {2003}, + Month = {Apr}, + Number = {4}, + Pages = {499--506}, + Volume = {17}, + Abstract = {To demonstrate the feasibility of a four-dimensional phase + contrast (PC) technique that permits spatial and temporal + coverage of an entire three-dimensional volume, to + quantitatively validate its accuracy against an established + time resolved two-dimensional PC technique to explore + advantages of the approach with regard to the + four-dimensional nature of the data.Time-resolved, + three-dimensional anatomical images were generated + simultaneously with registered three-directional velocity + vector fields. Improvements compared to prior methods + include retrospectively gated and respiratory compensated + image acquisition, interleaved flow encoding with freely + selectable velocity encoding (venc) along each spatial + direction, and flexible trade-off between temporal + resolution and total acquisition time.The implementation + was validated against established two-dimensional PC + techniques using a well-defined phantom, and successfully + applied in volunteer and patient examinations. Human + studies were performed after contrast administration in + order to compensate for loss of in-flow enhancement in the + four-dimensional approach.Advantages of the + four-dimensional approach include the complete spatial and + temporal coverage of the cardiovascular region of interest + and the ability to obtain high spatial resolution in all + three dimensions with higher signal-to-noise ratio compared + to two-dimensional methods at the same resolution. In + addition, the four-dimensional nature of the data offers a + variety of image processing options, such as magnitude and + velocity multi-planar reformation, three-directional vector + field plots, and velocity profiles mapped onto selected + planes of interest.}, + DOI = {10.1002/jmri.10272}, + Institution = {Department of Radiology, Stanford University, Stanford, + California 94304, USA. markl@s-word.stanford.edu}, + Keywords = {Contrast Media; Coronary Circulation, physiology; + Feasibility Studies; Gadolinium DTPA; Humans; Imaging, + Three-Dimensional; Magnetic Resonance Imaging, methods; + Phantoms, Imaging}, + Language = {eng}, + medline-pst = {ppublish}, + owner = {stoeckc}, + pmid = {12655592}, + timestamp = {2015.07.28}, + URL = {http://dx.doi.org/10.1002/jmri.10272} +} + +@Article{ markl20124d, + Title = {4{D} flow {MRI}}, + Author = {Markl, Michael and Frydrychowicz, Alex and Kozerke, + Sebastian and Hope, Mike and Wieben, Oliver}, + Journal = {Journal of Magnetic Resonance Imaging}, + Volume = {36}, + Number = {5}, + Pages = {1015--1036}, + Year = {2012}, + Publisher = {Wiley Online Library} +} + +###Article{ markl20124d, + Title = {4{D} flow {MRI}}, + Author = {Markl, Michael and Frydrychowicz, Alex and Kozerke, + Sebastian and Hope, Mike and Wieben, Oliver}, + Journal = {Journal of Magnetic Resonance Imaging}, + Volume = {36}, + Number = {5}, + Pages = {1015--1036}, + Year = {2012}, + Publisher = {Wiley Online Library} +} + +@Article{ markl_4d_2012, + Title = {{{4D}} Flow {{MRI}}}, + Volume = {36}, + Number = {5}, + JournalTitle = {Journal of Magnetic Resonance Imaging}, + Year = {2012}, + Pages = {1015--1036}, + Author = {Markl, Michael and Frydrychowicz, Alex and Kozerke, + Sebastian and Hope, Mike and Wieben, Oliver} +} + +@Article{ markl_time-resolved_2003, + Title = {Time-Resolved Three-Dimensional Phase-Contrast {{MRI}}}, + Author = {Markl, Michael and Chan, Frandics P. and Alley, Marcus T. + and Wedding, Kris L. and Draney, Mary T. and Elkins, Chris + J. and Parker, David W. and Wicker, Ryan and Taylor, + Charles A. and Herfkens, Robert J.}, + Year = {2003}, + Volume = {17}, + Pages = {499--506}, + Journal = {Journal of Magnetic Resonance Imaging: An Official Journal + of the International Society for Magnetic Resonance in + Medicine}, + Number = {4} +} + +@Article{ marlevi2020vwerpt, + Title = {Non-invasive estimation of relative pressure in turbulent + flow using virtual work-energy}, + Author = {Marlevi, David and Ha, Hojin and Dillon-Murphy, Desmond + and Fernandes, Joao F and Fovargue, Daniel and + Colarieti-Tosti, Massimiliano and Larsson, Matilda and + Lamata, Pablo and Figueroa, C Alberto and Ebbers, Tino and + others}, + Journal = {Medical Image Analysis}, + Volume = {60}, + Pages = {101627}, + Year = {2020}, + Publisher = {Elsevier} +} + +@Article{ marlevi_estimation_2019, + langid = {english}, + Title = {Estimation of {{Cardiovascular Relative Pressure Using + Virtual Work}}-{{Energy}}}, + Volume = {9}, + ISSN = {2045-2322}, + URL = {http://www.nature.com/articles/s41598-018-37714-0}, + DOI = {10.1038/s41598-018-37714-0}, + Number = {1}, + JournalTitle = {Scientific Reports}, + URLDate = {2019-02-15}, + Year = {2019-12}, + Author = {Marlevi, David and Ruijsink, Bram and Balmus, Maximilian + and Dillon-Murphy, Desmond and Fovargue, Daniel and + Pushparajah, Kuberan and Bertoglio, Crist\'obal and + Colarieti-Tosti, Massimiliano and Larsson, Matilda and + Lamata, Pablo and Figueroa, C. Alberto and Razavi, Reza and + Nordsletten, David A.} +} + +@Article{ marom2013bav, + Title = {Fully coupled fluid--structure interaction model of + congenital bicuspid aortic valves: effect of asymmetry on + hemodynamics}, + Author = {Marom, G. and Kim, H. and Rosenfeld, M. and Raanani, E. + and Haj-Ali, R.}, + Journal = {Medical \& biological engineering \& computing}, + Volume = {51}, + Number = {8}, + Pages = {839--848}, + Year = {2013}, + Publisher = {Springer} +} + +@Article{ maronnier-picasso-rappaz-99, + Author = {Maronnier, V. and Picasso, M. and Rappaz, J.}, + Journal = {J. Comput. Phys.}, + Number = {2}, + Pages = {439--455}, + Title = {Numerical simulation of free surface flows}, + Volume = {155}, + Year = {1999} +} + +###Article{ maronnier-picasso-rappaz-99, + Author = {Maronnier, V. and Picasso, M. and Rappaz, J.}, + Journal = {J. Comput. Phys.}, + Number = {2}, + Pages = {439--455}, + Title = {Numerical simulation of free surface flows}, + Volume = {155}, + Year = {1999} +} + +@Article{ martin-clement-decoene-gerbeau-05, + Author = {Martin, V. and Cl\'ement, F. and Decoene, A. and Gerbeau, + J-F.}, + Title = {Parameter identification for a one-dimensional blood flow + model}, + Journal = {ESAIM-Proceedings}, + Year = {2005}, + Pages = {174-200}, + DOI = "10.1051/proc:2005014", + Volume = {14} +} + +###Article{ martin-clement-decoene-gerbeau-05, + Author = {Martin, V. and Cl\'ement, F. and Decoene, A. and Gerbeau, + J-F.}, + Title = {Parameter identification for a one-dimensional blood flow + model}, + Journal = {ESAIM-Proceedings}, + Year = {2005}, + Pages = {174-200}, + DOI = "10.1051/proc:2005014", + URL = "http://dx.doi.org/10.1051/proc:2005014", + Volume = {14} +} + +@Article{ martin-witkowski-marty-98, + Annote = {mhd}, + Author = {Martin Witkowski, L. and Marty, P.}, + code = {mhd38}, + Journal = {Eur. J. Mech., B/Fluids}, + Number = {2}, + Pages = {239-254}, + Title = {Effect of a rotating magnetic field of arbitrary frequency + on a liquid metal column}, + Volume = {17}, + Year = {1998} +} + +###Article{ martin-witkowski-marty-98, + Annote = {mhd}, + Author = {Martin Witkowski, L. and Marty, P.}, + code = {mhd38}, + Journal = {Eur. J. Mech., B/Fluids}, + Number = {2}, + Pages = {239-254}, + Title = {Effect of a rotating magnetic field of arbitrary frequency + on a liquid metal column}, + Volume = {17}, + Year = {1998} +} + +@Article{ masson2008cha, + Title = {Characterization of arterial wall mechanical behavior and + stresses from human clinical data.}, + Author = {Masson, I. and Boutouyrie, P. and Laurent, S. and + Humphrey, J.D. and Zidi, M.}, + Journal = {Journal of Biomechanics}, + Year = {2008}, + Abstract = {This paper demonstrates the feasibility of material + identification and wall stress computation for human common + carotid arteries based on non-invasive in vivo clinical + data: dynamical intraluminal pressure measured by + applanation tonometry, and medial diameter and + intimal-medial thickness measured by high-resolution + ultrasound echotracking. The mechanical behavior was + quantified assuming an axially pre-stretched, thick-walled, + cylindrical artery subjected to dynamical blood pressure + and perivascular constraints. The wall was further assumed + to be three-dimensional and to consist of a nonlinear, + hyperelastic, anisotropic, incompressible material with + smooth muscle activity and residual stresses. Mechanical + contributions by individual constituents-an + elastin-dominated matrix, collagen fibers, and vascular + smooth muscle-were accounted for using a previously + proposed microstructurally motivated constitutive relation. + The in vivo boundary value problem was solved + semi-analytically to compute the inner pressure during a + mean cardiac cycle. Using a nonlinear least-squares method, + optimal model parameters were determined by minimizing + differences between computed and measured inner pressures + over a mean cardiac cycle. The fit-to-data from two healthy + patients was very good and the predicted radial, + circumferential, and axial stretch and stress fields were + sensible. Hence, the proposed approach was able to identify + complex geometric and material parameters directly from + non-invasive in vivo human data.} +} + +###Article{ masson2008cha, + Title = {Characterization of arterial wall mechanical behavior and + stresses from human clinical data.}, + Author = {Masson, I. and Boutouyrie, P. and Laurent, S. and + Humphrey, J.D. and Zidi, M.}, + Journal = {Journal of Biomechanics}, + Year = {2008}, + Abstract = {This paper demonstrates the feasibility of material + identification and wall stress computation for human common + carotid arteries based on non-invasive in vivo clinical + data: dynamical intraluminal pressure measured by + applanation tonometry, and medial diameter and + intimal-medial thickness measured by high-resolution + ultrasound echotracking. The mechanical behavior was + quantified assuming an axially pre-stretched, thick-walled, + cylindrical artery subjected to dynamical blood pressure + and perivascular constraints. The wall was further assumed + to be three-dimensional and to consist of a nonlinear, + hyperelastic, anisotropic, incompressible material with + smooth muscle activity and residual stresses. Mechanical + contributions by individual constituents-an + elastin-dominated matrix, collagen fibers, and vascular + smooth muscle-were accounted for using a previously + proposed microstructurally motivated constitutive relation. + The in vivo boundary value problem was solved + semi-analytically to compute the inner pressure during a + mean cardiac cycle. Using a nonlinear least-squares method, + optimal model parameters were determined by minimizing + differences between computed and measured inner pressures + over a mean cardiac cycle. The fit-to-data from two healthy + patients was very good and the predicted radial, + circumferential, and axial stretch and stress fields were + sensible. Hence, the proposed approach was able to identify + complex geometric and material parameters directly from + non-invasive in vivo human data.} +} + +@Book{ matlab2013, + Year = {2013}, + Author = {MATLAB}, + Title = {version 8.2.0.701 (R2013b)}, + Publisher = {The MathWorks Inc.}, + Address = {Natick, Massachusetts} +} + +@InProceedings{ matthies-steindorf-01, + Author = {Matthies, H. G. and Steindorf, J.}, + BookTitle = {Computational Fluid and Solid Mechanics}, + code = {fsi6}, + Editor = {K.J. Bathe}, + Pages = {1317-1319}, + Publisher = {Elsevier}, + Title = {How to make weak coupling strong}, + Year = {2001} +} + +###InProceedings{ matthies-steindorf-01, + Author = {Matthies, H. G. and Steindorf, J.}, + BookTitle = {Computational Fluid and Solid Mechanics}, + code = {fsi6}, + Editor = {K.J. Bathe}, + Pages = {1317-1319}, + Publisher = {Elsevier}, + Title = {How to make weak coupling strong}, + Year = {2001} +} + +@Article{ matthies-steindorf-02, + Author = {Matthies, H.G. and Steindorf, J.}, + code = {fsi7}, + Journal = {Comp. \& Struct.}, + Number = {27--30}, + Pages = {1991--1999}, + Title = {Partitioned but strongly coupled iteration schemes for + nonlinear fluid-structure interaction}, + Volume = {80}, + Year = {2002} +} + +###Article{ matthies-steindorf-02, + Author = {Matthies, H.G. and Steindorf, J.}, + code = {fsi7}, + Journal = {Comp. \& Struct.}, + Number = {27--30}, + Pages = {1991--1999}, + Title = {Partitioned but strongly coupled iteration schemes for + nonlinear fluid-structure interaction}, + Volume = {80}, + Year = {2002} +} + +@TechReport{ matthies-steindorf-02b, + Author = {Matthies, H.G. and Steindorf, J.}, + Institution = {TU Braunschweig}, + Title = {Strong coupling methods}, + Year = {2002} +} + +###TechReport{ matthies-steindorf-02b, + Author = {Matthies, H.G. and Steindorf, J.}, + Institution = {TU Braunschweig}, + Title = {Strong coupling methods}, + Year = {2002} +} + +@Article{ matthies-steindorf-02c, + Author = {Matthies, H.G. and Steindorf, J.}, + code = {fsi7}, + Journal = {Comp. \& Struct.}, + Number = {27--30}, + Pages = {1991--1999}, + Title = {Partitioned but strongly coupled iteration schemes for + nonlinear fluid-structure interaction}, + Volume = {80}, + Year = {2002} +} + +###Article{ matthies-steindorf-02c, + Author = {Matthies, H.G. and Steindorf, J.}, + code = {fsi7}, + Journal = {Comp. \& Struct.}, + Number = {27--30}, + Pages = {1991--1999}, + Title = {Partitioned but strongly coupled iteration schemes for + nonlinear fluid-structure interaction}, + Volume = {80}, + Year = {2002} +} + +@Article{ matthies-steindorf-03, + Author = {Matthies, H.G. and Steindorf, J. }, + Journal = {Comp. \& Struct.}, + Pages = {805-812}, + Title = {Partitioned strong coupling algorithms for fluid-structure + interaction}, + Volume = {81}, + Year = {2003} +} + +###Article{ matthies-steindorf-03, + Author = {Matthies, H.G. and Steindorf, J. }, + Journal = {Comp. \& Struct.}, + Pages = {805-812}, + Title = {Partitioned strong coupling algorithms for fluid-structure + interaction}, + Volume = {81}, + Year = {2003} +} + +@Article{ maury-96, + Author = {Maury, B.}, + Journal = {Comp. Fluid. Dyn.}, + Pages = {175-188}, + Title = {Characteristics {ALE} methods for the unsteady {3D + Navier-Stokes} equations with a free surface}, + Volume = 6, + Year = 1996 +} + +###Article{ maury-96, + Author = {Maury, B.}, + Journal = {Comp. Fluid. Dyn.}, + Pages = {175-188}, + Title = {Characteristics {ALE} methods for the unsteady {3D + Navier-Stokes} equations with a free surface}, + Volume = 6, + Year = 1996 +} + +@Article{ maury-99, + Author = {Maury, B.}, + Journal = {J. Comput. Phys.}, + Number = {2}, + Pages = {325--351}, + Title = {Direct simulations of {$2$}{D} fluid-particle flows in + biperiodic domains}, + Volume = {156}, + Year = {1999} +} + +###Article{ maury-99, + Author = {Maury, B.}, + Journal = {J. Comput. Phys.}, + Number = {2}, + Pages = {325--351}, + Title = {Direct simulations of {$2$}{D} fluid-particle flows in + biperiodic domains}, + Volume = {156}, + Year = {1999} +} + +@Article{ maynewmann1998pbmb, + Title = {Homogenization modeling for the mechanics of perfused + myocardium}, + Author = {May-Newmann, Karen and McCulloch, Andrew}, + Journal = {Progress in Biophysics and Molecular Biology}, + Year = {0079}, + Pages = {463--481}, + Volume = {69}, + BookTitle = {Progress in Biophysics and Molecular Biology}, + File = {:MayNewmann1998PBMB.pdf:PDF}, + Keywords = {Perfusion, Coronary artery, Microvessels, Coronary blood + flow}, + review = {Pro g r e s s i n + + Biophysics & Molecular + + Biology PERGAMON Progress in Biophysics & Molecular Biology + 69 (1998) 463?481 + + Homogenization modeling for the mechanics of perfused + myocardium + + Karen May-Newman 1, Andrew D. McCulloch * + + Department of Bioengineering, University of California San + Diego, 9500 Gilman Drive, La Jolla, CA 92093-0412, USA + + Abstract + + Altered coronary perfusion can change the apparent + diastolic sti€ness of ventricular myocardium?the ?garden + hose? e€ect. Our recent findings showed that myocardial + strains are reduced during ventricular filling, primarily + along the directions transverse to the coronary + microvessels. In this article, we review hypotheses and + theoretical models regarding the role that regional wall + stress plays in the mechanical interaction between + myocardium and coronary circulation. Various mechanisms + have been used to explain the e€ects of the tissue stress + on coronary flow, as well as the e€ect of coronary + dynamics on myocardial mechanics. Many models of coronary + pressure-flow relations using lumped parameter circuit + analogs. Poroelasticity and swelling theories have been + used to model the mechanics of perfused muscle. Here, we + describe a new mathematical model of the mechanics of + perfused myocardium derived using homogenization theory. In + this model, perfused myocardium is treated as a nonlinear + anisotropic elastic solid embedded with cylindrical vessels + of known distensibility. The solid compartment is + incompressible but the vascular compartment may change + volume according to a simple relation between vessel + diameter and perfusion pressure. The work done by the + perfusion pressure in changing vascular volume contributes + to the macroscopic strain energy and hence a€ects the + stress and sti€ness of the composite. Conversely, the + stress in the tissue a€ects microvessel diameter and + volume, since tractions transverse to the vessel axis + oppose the internal blood pressure. Finite element + simulations of passive filling show good agreement of model + with experimental results. # 1998 Elsevier Science Ltd. All + rights reserved. + + Keywords: Stress; Strain; Coronary artery; Microvessels; + Coronary blood flow + + * Corresponding author. Fax: +1-619-534-2547; E-mail: + amcculloch@ucsd.edu 1 Present address: Alliance + Pharmaceutical Corp., San Diego, CA 92121, USA. + + 0079-6107/98/$19.00 # 1998 Elsevier Science Ltd. All rights + reserved. PII: S0079-6107(98)00020-0} +} + +@Article{ mayo2009radiation, + Title = {Radiation dose in cardiac CT}, + Author = {Mayo, John R and Leipsic, Jonathon A}, + Journal = {American journal of roentgenology}, + Volume = {192}, + Number = {3}, + Pages = {646--653}, + Year = {2009}, + Publisher = {Am Roentgen Ray Soc} +} + +@Article{ mcalister2007jama, + Title = {Cardiac resynchronization therapy for patients with left + ventricular systolic dysfunction: A systematic review}, + Author = {McAlister, Finlay A. and Ezekowitz, Justin and Hooton, + Nicola and et al}, + Journal = {JAMA}, + Year = {2007}, + Number = {22}, + Pages = {2502-2514}, + Volume = {297}, + DOI = {10.1001/jama.297.22.2502}, + EPrint = {/data/Journals/JAMA/5174/jcr70006_2502_2514.pdf}, + File = {mcalister07.pdf:mcalister07.pdf:PDF}, + timestamp = {2015/09/14}, + URL = { + http://dx.doi.org/10.1001/jama.297.22.2502} +} + +@Article{ mcgill_preventing_2008, + langid = {english}, + Title = {Preventing Heart Disease in the 21st Century: Implications + of the {{Pathobiological Determinants}} of + {{Atherosclerosis}} in {{Youth}} ({{PDAY}}) Study}, + Volume = {117}, + ISSN = {1524-4539}, + DOI = {10.1161/CIRCULATIONAHA.107.717033}, + ShortTitle = {Preventing Heart Disease in the 21st Century}, + Number = {9}, + JournalTitle = {Circulation}, + ShortJournal = {Circulation}, + Year = {2008-03-04}, + Pages = {1216-1227}, + Author = {McGill, Henry C. and McMahan, C. Alex and Gidding, Samuel + S.}, + EPrintType = {pmid}, + EPrint = {18316498} +} + +@Article{ mckay1986circ, + Title = {Left ventricular remodeling after myocardial infarction: a + corollary to infarct expansion.}, + Author = {McKay, R G and Pfeffer, M A and Pasternak, R C and Markis, + J E and Come, P C and Nakao, S and Alderman, J D and + Ferguson, J J and Safian, R D and Grossman, W}, + Journal = {Circulation}, + Year = {1986}, + Number = {4}, + Pages = {693-702}, + Volume = {74}, + Abstract = {Dilatation of infarcted segments (infarct expansion) may + occur during recovery from myocardial infarction, but the + fate of noninfarcted segments is uncertain. Accordingly, + left ventricular geometric changes were assessed by left + ventricular angiography and M mode echocardiography on + admission and 2 weeks later in 30 patients with their first + acute transmural myocardial infarction. All patients + demonstrated chest pain, ST segment elevation with + subsequent development of Q waves (15 anterior, 15 + inferior), and elevation of cardiac enzymes. Sequential + left ventricular angiographic and hemodynamic findings were + available in these patients by virtue of their + participation in a study of thrombolysis in acute + myocardial infarction. By that study design, all patients + treated successfully with thrombolytic therapy and + demonstrating improvement of flow in an occluded coronary + artery underwent repeat cardiac catheterization. At 2 weeks + there was a significant decrease in left ventricular and + pulmonary capillary wedge pressures (p less than .01), + whereas both left ventricular end-diastolic (LVEDV) and + end-systolic (LVESV) volume indexes increased (p less than + .01). The increase in LVEDV correlated directly with the + percentage of the ventriculographic silhouette that was + akinetic or dyskinetic at the initial catheterization (r = + .71, p less than .001). To assess regional changes in both + infarcted and noninfarcted segments, serial endocardial + perimeter lengths of both the akinetic-dyskinetic segments + (infarction zone) and of the remainder of the cardiac + silhouette (noninfarction zone) were measured in all + patients who demonstrated at least a 20% increase in their + LVEDV at 2 weeks after myocardial infarction. Notably, + there was a mean increase of 13% in the endocardial + perimeter length of infarcted segments and a 19% increase + in the endocardial perimeter length of noninfarcted + segments. Serial M mode echocardiographic studies showed no + significant change in the wall thickness of noninfarcted + myocardial segments. Hemodynamic changes that occurred in + this subgroup of patients included significant decreases in + left ventricular end-diastolic and pulmonary capillary + wedge pressures (p less than .05) and significant increases + in angiographic cardiac index (p less than .01) and LVESV + index (p less than .01). We conclude that in patients who + manifest cardiac dilatation in the early convalescent + period after myocardial infarction, there is remodeling of + the entire left ventricle including infarct expansion of + akinetic-dyskinetic segments and volume-overload + hypertrophy of noninfarcted segments.(ABSTRACT TRUNCATED AT + 400 WORDS)}, + DOI = {10.1161/01.CIR.74.4.693}, + EPrint = {http://circ.ahajournals.org/content/74/4/693.full.pdf+html}, + File = {mckay86.pdf:mckay86.pdf:PDF}, + timestamp = {2015/09/14}, + URL = {http://circ.ahajournals.org/content/74/4/693.abstract} +} + +@Article{ mcmurray2012, + Title = {ESC guidelines for the diagnosis and treatment of acute + and chronic heart failure 2012: The Task Force for the + Diagnosis and Treatment of Acute and Chronic Heart Failure + 2012 of the European Society of Cardiology. Developed in + collaboration with the Heart Failure Association (HFA) of + the ESC.}, + Author = {McMurray, John J V. and Adamopoulos, Stamatis and Anker, + Stefan D. and Auricchio, Angelo and B{\"{o}}hm, Michael and + Dickstein, Kenneth and Falk, Volkmar and Filippatos, + Gerasimos and Fonseca, C{\^{a}}ndida and Gomez-Sanchez, + Miguel Angel and Jaarsma, Tiny and K{\o}ber, Lars and Lip, + Gregory Y H. and Maggioni, Aldo Pietro and Parkhomenko, + Alexander and Pieske, Burkert M. and Popescu, Bogdan A. and + R{\o}nnevik, Per K. and Rutten, Frans H. and Schwitter, + Juerg and Seferovic, Petar and Stepinska, Janina and + Trindade, Pedro T. and Voors, Adriaan A. and Zannad, Faiez + and Zeiher, Andreas and , Task Force for the Diagnosis and + Treatment of Acute and Chronic Heart Failure 2012 of the + European Society of Cardiology and Bax, Jeroen J. and + Baumgartner, Helmut and Ceconi, Claudio and Dean, Veronica + and Deaton, Christi and Fagard, Robert and Funck-Brentano, + Christian and Hasdai, David and Hoes, Arno and Kirchhof, + Paulus and Knuuti, Juhani and Kolh, Philippe and McDonagh, + Theresa and Moulin, Cyril and Popescu, Bogdan A. and + Reiner, Zeljko and Sechtem, Udo and Sirnes, Per Anton and + Tendera, Michal and Torbicki, Adam and Vahanian, Alec and + Windecker, Stephan and McDonagh, Theresa and Sechtem, Udo + and Bonet, Luis Almenar and Avraamides, Panayiotis and {Ben + Lamin}, Hisham A. and Brignole, Michele and Coca, Antonio + and Cowburn, Peter and Dargie, Henry and Elliott, Perry and + Flachskampf, Frank Arnold and Guida, Guido Francesco and + Hardman, Suzanna and Iung, Bernard and Merkely, Bela and + Mueller, Christian and Nanas, John N. and Nielsen, Olav + Wendelboe and Orn, Stein and Parissis, John T. and + Ponikowski, Piotr and , E. S. C Committee for Practice + Guidelines}, + Journal = {Eur J Heart Fail}, + Year = {2012}, + Month = {Aug}, + Number = {8}, + Pages = {803--869}, + Volume = {14}, + Institution = {Glasgow G12 8QQ, UK. john.mcmurray@glasgow.ac.uk}, + Keywords = {Algorithms; Antihypertensive Agents, therapeutic use; + Cardiotonic Agents, therapeutic use; Europe; Heart Failure, + diagnosis/drug therapy; Humans; Natriuretic Peptides; + Renin-Angiotensin System; Societies, Medical; Stroke + Volume; Ventricular Function, Left}, + Language = {eng}, + medline-pst = {ppublish}, + owner = {stoeckc}, + pmid = {22828712}, + timestamp = {2015.07.24} +} + +@Book{ medscape, + Title = {{Medscape Reference. Coarctation of the Aorta}}, + Author = {Syamasundar, R. and Seib, P.}, + Year = {2011} +} + +###Book{ medscape, + Title = {{Medscape Reference. Coarctation of the Aorta}}, + Author = {Syamasundar, R. and Seib, P.}, + Address = {\url{http://emedicine.medscape.com/article/895502-overview}}, + Year = {2011} +} + +@InProceedings{ meier_non-invasive_2010, + Title = {Non-Invasive {{4D}} Blood Flow and Pressure Quantification + in Central Blood Vessels via {{PC}}-{{MRI}}}, + BookTitle = {Computing in {{Cardiology}}, 2010}, + Publisher = {{IEEE}}, + Year = {2010}, + Pages = {903--906}, + Author = {Meier, Sebastian and Hennemuth, Anja and Friman, Ola and + Bock, Jelena and Markl, Michael and Preusser, Tobias} +} + +@Article{ meir-95, + Annote = {mhd, existence}, + Author = {Meir, A. J.}, + code = {mhd4}, + Journal = {Num. Meth. Partial Diff. Eq.}, + Pages = {311-337}, + Title = {Thermally coupled, stationary, incompressible MHD flow; + existence, uniqueness, and finite element approximation}, + Volume = {11}, + Year = {1995} +} + +###Article{ meir-95, + Annote = {mhd, existence}, + Author = {Meir, A. J.}, + code = {mhd4}, + Journal = {Num. Meth. Partial Diff. Eq.}, + Pages = {311-337}, + Title = {Thermally coupled, stationary, incompressible MHD flow; + existence, uniqueness, and finite element approximation}, + Volume = {11}, + Year = {1995} +} + +@Article{ meir-schmidt-94, + Annote = {mhd, existence}, + Author = {Meir, A.J. and Schmidt, P.G.}, + code = {mhd5}, + Journal = {Appl. Math. Comp.}, + Pages = {95-109}, + Title = {A velocity-current formulation for stationary {MHD} flow}, + Volume = {65}, + Year = {1994} +} + +###Article{ meir-schmidt-94, + Annote = {mhd, existence}, + Author = {Meir, A.J. and Schmidt, P.G.}, + code = {mhd5}, + Journal = {Appl. Math. Comp.}, + Pages = {95-109}, + Title = {A velocity-current formulation for stationary {MHD} flow}, + Volume = {65}, + Year = {1994} +} + +@Article{ meir-schmidt-96, + Annote = {mhd, boundary integral}, + Author = {Meir, A.J. and Schmidt, P.G.}, + code = {mhd6}, + Journal = {Nonlinear Anal., Theo. Meth. Appl.}, + Number = {4}, + Pages = {659-689}, + Title = {Variational methods for stationary {MHD} flow under + natural interface conditions}, + Volume = {26}, + Year = {1996} +} + +###Article{ meir-schmidt-96, + Annote = {mhd, boundary integral}, + Author = {Meir, A.J. and Schmidt, P.G.}, + code = {mhd6}, + Journal = {Nonlinear Anal., Theo. Meth. Appl.}, + Number = {4}, + Pages = {659-689}, + Title = {Variational methods for stationary {MHD} flow under + natural interface conditions}, + Volume = {26}, + Year = {1996} +} + +@Article{ meir-schmidt-99, + Annote = {mhd, finite element}, + Author = {Meir, A.J. and Schmidt, P.G.}, + code = {mhd10}, + Journal = {SIAM J. Numer. Anal.}, + Number = {4}, + Pages = {1304-1332}, + Title = {Analysis and numerical approximation of a stationnary + {MHD} flow problem with nonideal boundary}, + Volume = {36}, + Year = {1999} +} + +###Article{ meir-schmidt-99, + Annote = {mhd, finite element}, + Author = {Meir, A.J. and Schmidt, P.G.}, + code = {mhd10}, + Journal = {SIAM J. Numer. Anal.}, + Number = {4}, + Pages = {1304-1332}, + Title = {Analysis and numerical approximation of a stationnary + {MHD} flow problem with nonideal boundary}, + Volume = {36}, + Year = {1999} +} + +@Article{ mendelsohn1994late, + Title = {Late follow-up of balloon angioplasty in children with a + native coarctation of the aorta}, + Author = {Mendelsohn, Alan M and Lloyd, Thomas R and Crowley, Dennis + C and Sandhu, Satinder K and Kocis, Keith C and Beekman, + Robert H}, + Journal = {The American journal of cardiology}, + Volume = {74}, + Number = {7}, + Pages = {696--700}, + Year = {1994}, + Publisher = {Elsevier} +} + +###Article{ mendelsohn1994late, + Title = {Late follow-up of balloon angioplasty in children with a + native coarctation of the aorta}, + Author = {Mendelsohn, Alan M and Lloyd, Thomas R and Crowley, Dennis + C and Sandhu, Satinder K and Kocis, Keith C and Beekman, + Robert H}, + Journal = {The American journal of cardiology}, + Volume = {74}, + Number = {7}, + Pages = {696--700}, + Year = {1994}, + Publisher = {Elsevier} +} + +@Article{ menon2012coupled, + Title = {A coupled experimental and computational approach to + quantify deleterious hemodynamics, vascular alterations, + and mechanisms of long-term morbidity in response to aortic + coarctation}, + Author = {Menon, Arjun and Wendell, David C and Wang, Hongfeng and + Eddinger, Thomas J and Toth, Jeffrey M and Dholakia, Ronak + J and Larsen, Paul M and Jensen, Eric S and LaDisa, John + F}, + Journal = {Journal of pharmacological and toxicological methods}, + Volume = {65}, + Number = {1}, + Pages = {18--28}, + Year = {2012}, + Publisher = {Elsevier} +} + +###Article{ menon2012coupled, + Title = {A coupled experimental and computational approach to + quantify deleterious hemodynamics, vascular alterations, + and mechanisms of long-term morbidity in response to aortic + coarctation}, + Author = {Menon, Arjun and Wendell, David C and Wang, Hongfeng and + Eddinger, Thomas J and Toth, Jeffrey M and Dholakia, Ronak + J and Larsen, Paul M and Jensen, Eric S and LaDisa, John + F}, + Journal = {Journal of pharmacological and toxicological methods}, + Volume = {65}, + Number = {1}, + Pages = {18--28}, + Year = {2012}, + Publisher = {Elsevier} +} + +@Article{ menzel2012mrc, + Title = {Frontiers in growth and remodeling }, + Author = {Andreas Menzel and Ellen Kuhl}, + Journal = {Mechanics Research Communications }, + Year = {2012}, + Note = {Recent Advances in the Biomechanics of Growth and + Remodeling }, + Pages = {1 - 14}, + Volume = {42}, + Abstract = {Unlike common engineering materials, living matter can + autonomously respond to environmental changes. Living + structures can grow stronger, weaker, larger, or smaller + within months, weeks, or days as a result of a continuous + microstructural turnover and renewal. Hard tissues can + adapt by increasing their density and grow strong. Soft + tissues can adapt by increasing their volume and grow + large. For more than three decades, the mechanics community + has actively contributed to understand the phenomena of + growth and remodeling from a mechanistic point of view. + However, to date, there is no single, unified + characterization of growth, which is equally accepted by + all scientists in the field. Here we shed light on the + continuum modeling of growth and remodeling of living + matter, and give a comprehensive overview of historical + developments and trends. We provide a state-of-the-art + review of current research highlights, and discuss + challenges and potential future directions. Using the + example of volumetric growth, we illustrate how we can + establish and utilize growth theories to characterize the + functional adaptation of soft living matter. We anticipate + this review to be the starting point for critical + discussions and future research in growth and remodeling, + with a potential impact on life science and medicine. }, + DOI = {http://dx.doi.org/10.1016/j.mechrescom.2012.02.007}, + File = {menzel12.pdf:menzel12.pdf:PDF}, + ISSN = {0093-6413}, + Keywords = {Living matter}, + URL = {http://www.sciencedirect.com/science/article/pii/S0093641312000225} +} + +@Unpublished{ metier-02, + Author = {M{\'e}tier, P.}, + Note = {Universit{\'e} Paris 6}, + Title = {PhD in preparation} +} + +###Unpublished{ metier-02, + Author = {M{\'e}tier, P.}, + Note = {Universit{\'e} Paris 6}, + Title = {PhD in preparation} +} + +@Unpublished{ meyer-98, + Author = {Meyer, Y.}, + Note = {to appear}, + Title = {Wavelets, paraproducts and {Navier-Stokes} equations}, + Year = {1998} +} + +###Unpublished{ meyer-98, + Author = {Meyer, Y.}, + Note = {to appear}, + Title = {Wavelets, paraproducts and {Navier-Stokes} equations}, + Year = {1998} +} + +@Article{ michler-hulshoff-van-brummelen-de-borst-04, + Author = {Michler, C. and Hulshoff, S.J. and van Brummelen, E.H. and + de Borst, R.}, + Journal = {Comp. \& Fluids}, + Number = {5-6}, + Pages = {839-848}, + Title = {A monolithic approach to fluid-structure interaction}, + Year = {2004} +} + +###Article{ michler-hulshoff-van-brummelen-de-borst-04, + Author = {Michler, C. and Hulshoff, S.J. and van Brummelen, E.H. and + de Borst, R.}, + Journal = {Comp. \& Fluids}, + Number = {5-6}, + Pages = {839-848}, + Title = {A monolithic approach to fluid-structure interaction}, + Year = {2004} +} + +@Article{ michler-van-brummelen-de-borst-05, + Author = {Michler, C. and van Brummelen, E.H. and de Borst, R.}, + Journal = {Int. J. Num. Meth. Fluids}, + Number = {10-11}, + Pages = {1189-1195}, + Title = {An interface {Newton-Krylov} solver for fluid-structure + interaction}, + Volume = {47}, + Year = {2005} +} + +###Article{ michler-van-brummelen-de-borst-05, + Author = {Michler, C. and van Brummelen, E.H. and de Borst, R.}, + Journal = {Int. J. Num. Meth. Fluids}, + Number = {10-11}, + Pages = {1189-1195}, + Title = {An interface {Newton-Krylov} solver for fluid-structure + interaction}, + Volume = {47}, + Year = {2005} +} + +@Article{ michler2013ijnmbe, + Title = {A computationally efficient framework for the simulation + of cardiac perfusion using a multi-compartment Darcy + porous-media flow model}, + Author = {Michler, C. and Cookson, A. N. and Chabiniok, R. and Hyde, + E. and Lee, J. and Sinclair, M. and Sochi, T. and Goyal, A. + and Vigueras, G. and Nordsletten, D. A. and et al.}, + Journal = {International Journal for Numerical Methods in Biomedical + Engineering}, + Year = {2013}, + Month = {Oct}, + Number = {2}, + Pages = {217--232}, + Volume = {29}, + DOI = {10.1002/cnm.2520}, + File = {:Michler2012IJNMBE.pdf:PDF}, + ISSN = {2040-7939}, + Keywords = {Perfusion, Darcy, multicompartment}, + Publisher = {Wiley-Blackwell}, + URL = {http://dx.doi.org/10.1002/cnm.2520} +} + +@Article{ miglio-quarteroni-saleri-99, + Author = {Miglio, E. and Quarteroni, A. and Saleri, F.}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Number = {3-4}, + Pages = {355--369}, + Title = {Finite element approximation of quasi-3{D} shallow water + equations}, + Volume = {174}, + Year = {1999} +} + +###Article{ miglio-quarteroni-saleri-99, + Author = {Miglio, E. and Quarteroni, A. and Saleri, F.}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Number = {3-4}, + Pages = {355--369}, + Title = {Finite element approximation of quasi-3{D} shallow water + equations}, + Volume = {174}, + Year = {1999} +} + +@InProceedings{ mihalef_model-based_2014, + langid = {english}, + Title = {Model-{{Based Estimation}} of {{4D Relative Pressure Map}} + from {{4D Flow MR Images}}}, + ISBN = {978-3-642-54268-8}, + Abstract = {We propose a new framework for 4D relative pressure map + computations from 4D flow MRI that uses enhanced geometric + models for the blood vessels and flow-aware surface and + volumetric tags. The enhanced geometric modeling provides + better accuracy compared to a simple voxelized mask, while + tagging of inlets and outlets allows imposing + physiologically meaningful boundary conditions, + contributing to more accurate pressure computations. An + integrated software suite for semi-automatic processing of + 4D flow MR images, preparation and computation of the flow + parameters is presented. This enables a fast and intuitive + workflow, with accurate final results, ready in minutes.}, + BookTitle = {Statistical {{Atlases}} and {{Computational Models}} of + the {{Heart}}. {{Imaging}} and {{Modelling Challenges}}}, + Series = {Lecture {{Notes}} in {{Computer Science}}}, + Publisher = {{Springer Berlin Heidelberg}}, + Year = {2014}, + Pages = {236-243}, + Author = {Mihalef, Viorel and Rapaka, Saikiran and Gulsun, Mehmet + and Scorza, Angelo and Sharma, Puneet and Itu, Lucian and + Kamen, Ali and Barker, Alex and Markl, Michael and + Comaniciu, Dorin}, + Editor = {Camara, Oscar and Mansi, Tommaso and Pop, Mihaela and + Rhode, Kawal and Sermesant, Maxime and Young, Alistair} +} + +@InCollection{ mikelic-00, + Address = {Berlin}, + Author = {Mikeli{\'c}, A.}, + BookTitle = {Filtration in porous media and industrial application + (Cetraro, 1998)}, + Pages = {127--214}, + Publisher = {Springer}, + Series = {Lecture Notes in Math.}, + Title = {Homogenization theory and applications to filtration + through porous media}, + Volume = {1734}, + Year = {2000} +} + +###InCollection{ mikelic-00, + Address = {Berlin}, + Author = {Mikeli{\'c}, A.}, + BookTitle = {Filtration in porous media and industrial application + (Cetraro, 1998)}, + Pages = {127--214}, + Publisher = {Springer}, + Series = {Lecture Notes in Math.}, + Title = {Homogenization theory and applications to filtration + through porous media}, + Volume = {1734}, + Year = {2000} +} + +@Article{ milner-moore-rutt-steinman-98, + Author = {Milner, J.S and Moore, J.A. and Rutt, B.K. and Steinman, + D.A.}, + Journal = {Journal of vascular surgery}, + Number = {1}, + Pages = {143-156}, + Title = {Hemodynamics of human carotid artery bifurcations: + computational studies with models reconstructed from + magnetic resonance imaging of normal subjects}, + Volume = {27}, + Year = {1998} +} + +###Article{ milner-moore-rutt-steinman-98, + Author = {Milner, J.S and Moore, J.A. and Rutt, B.K. and Steinman, + D.A.}, + Journal = {Journal of vascular surgery}, + Number = {1}, + Pages = {143-156}, + Title = {Hemodynamics of human carotid artery bifurcations: + computational studies with models reconstructed from + magnetic resonance imaging of normal subjects}, + Volume = {27}, + Year = {1998} +} + +@Article{ minakowski_finite_2019, + ArchivePrefix = {arXiv}, + EPrintType = {arxiv}, + EPrint = {1902.07532}, + PrimaryClass = {math.NA}, + Title = {Finite {{Element Error Estimates}} under {{Geometric + Uncertainty}}}, + JournalTitle = {arXiv e-prints}, + Date = {2019-02}, + Pages = {arXiv:1902.07532}, + Author = {Minakowski, Piotr and Richter, Thomas}, + EID = {arXiv:1902.07532}, + adsurl = {https://ui.adsabs.harvard.edu/\#abs/2019arXiv190207532M}, + adsnote = {Provided by the SAO/NASA Astrophysics Data System} +} + +###Article{ minakowski_finite_2019, + ArchivePrefix = {arXiv}, + EPrintType = {arxiv}, + EPrint = {1902.07532}, + PrimaryClass = {math.NA}, + Title = {Finite {{Element Error Estimates}} under {{Geometric + Uncertainty}}}, + JournalTitle = {arXiv e-prints}, + Year = {2019-02}, + Pages = {arXiv:1902.07532}, + Author = {Minakowski, Piotr and Richter, Thomas}, + EID = {arXiv:1902.07532}, + adsurl = {https://ui.adsabs.harvard.edu/\#abs/2019arXiv190207532M}, + adsnote = {Provided by the SAO/NASA Astrophysics Data System} +} + +@Article{ miracle, + Author = {Abraham, W.T. and Fisher, W.G. and Smith, A.L. and et al}, + Journal = {The New England Journal of Medicine}, + Pages = {1845-1853}, + Title = {Cardiac resynchronization in Chronic Heart Failure}, + Volume = {346}, + Year = {2002} +} + +###Article{ miracle, + Author = {Abraham, W.T. and Fisher, W.G. and Smith, A.L. and et al}, + Journal = {The New England Journal of Medicine}, + Pages = {1845-1853}, + Title = {Cardiac resynchronization in Chronic Heart Failure}, + Volume = {346}, + Year = {2002} +} + +@Article{ miranville, + Author = {Miranville, A. and Wang, X.}, + Journal = {Disc. and Cont. Dyn. syst.}, + Number = {1}, + Pages = {95-110}, + Title = {Upper bound on the dimension of the attractor for + nonhomogeneous {Navier-Stokes} equations}, + Volume = {2}, + Year = {1996} +} + +###Article{ miranville, + Author = {Miranville, A. and Wang, X.}, + Journal = {Disc. and Cont. Dyn. syst.}, + Number = {1}, + Pages = {95-110}, + Title = {Upper bound on the dimension of the attractor for + nonhomogeneous {Navier-Stokes} equations}, + Volume = {2}, + Year = {1996} +} + +@Article{ mirzaee_mri-based_2017, + langid = {english}, + Title = {{{MRI}}-Based Computational Hemodynamics in Patients with + Aortic Coarctation Using the Lattice {{Boltzmann}} Methods: + {{Clinical}} Validation Study}, + Volume = {45}, + ISSN = {1522-2586}, + URL = {https://onlinelibrary.wiley.com/doi/abs/10.1002/jmri.25366}, + DOI = {10.1002/jmri.25366}, + ShortTitle = {{{MRI}}-Based Computational Hemodynamics in Patients with + Aortic Coarctation Using the Lattice {{Boltzmann}} + Methods}, + Abstract = {Purpose To introduce a scheme based on a recent technique + in computational hemodynamics, known as the lattice + Boltzmann methods (LBM), to noninvasively measure pressure + gradients in patients with a coarctation of the aorta + (CoA). To provide evidence on the accuracy of the proposed + scheme, the computed pressure drop values are compared + against those obtained using the reference standard method + of catheterization. Materials and Methods Pre- and + posttreatment LBM-based pressure gradients for 12 patients + with CoA were simulated for the time point of peak systole + using the open source library OpenLB. Four-dimensional (4D) + flow-sensitive phase-contrast MRI at 1.5 Tesla was used to + acquire flow and to setup the simulation. The vascular + geometry was reconstructed using 3D whole-heart MRI. + Patients underwent pre- and postinterventional pressure + catheterization as a reference standard. Results There is a + significant linear correlation between the pretreatment + catheter pressure drops and those computed based on the LBM + simulation, , . The bias was -0.58 ± 4.1 mmHg and was not + significant ( with a 95\% confidence interval (CI) of -3.22 + to 2.06. For the posttreatment results, the bias was larger + and at -2.54 ± 3.53 mmHg with a 95\% CI of -0.17 to -4.91 + mmHg. Conclusion The results indicate a reasonable + agreement between the simulation results and the catheter + measurements. LBM-based computational hemodynamics can be + considered as an alternative to more traditional + computational fluid dynamics schemes for noninvasive + pressure calculations and can assist in diagnosis and + therapy planning. Level of Evidence: 3 J. Magn. Reson. + Imaging 2017;45:139–146.}, + Number = {1}, + JournalTitle = {Journal of Magnetic Resonance Imaging}, + URLDate = {2019-01-29}, + Year = {2017}, + Pages = {139-146}, + Author = {Mirzaee, Hanieh and Henn, Thomas and Krause, Mathias J. + and Goubergrits, Leonid and Schumann, Christian and + Neugebauer, Mathias and Kuehne, Titus and Preusser, Tobias + and Hennemuth, Anja} +} + +@Book{ modersitzki-04, + Title = {Numerical Methods for Image Registration}, + Author = {Modersitzki, J.}, + Year = {2004}, + Publisher = {Oxford university press} +} + +###Book{ modersitzki-04, + Title = {Numerical Methods for Image Registration}, + Author = {Modersitzki, J.}, + Year = {2004}, + Publisher = {Oxford university press} +} + +@Article{ moens-1878, + Title = {{Die Pulskurve}}, + Volume = {}, + Number = {}, + Journal = {}, + Publisher = {Leiden, The Netherlands:.J. Brill}, + Author = {Moens, A.I.}, + Year = {1878} +} + +###Article{ moens-1878, + Title = {{Die Pulskurve}}, + Volume = {}, + URL = {http://www.archive.org/details/diepulscurve00iseb}, + Number = {}, + Journal = {}, + Publisher = {Leiden, The Netherlands:.J. Brill}, + Author = {Moens, A.I.}, + Year = {1878} +} + +@Article{ moghadam-bazilevs-etal-11, + hal_id = {hal-00650986}, + Title = {{A comparison of outlet boundary treatments for prevention + of backflow divergence with relevance to blood flow + simulations}}, + Author = {Moghadam, M. and Bazilevs, Y. and Hsia, T.-Y. and + Vignon-Clementel, I. and Marsden, A. and Modeling Of + Congenital Hearts Alliance Investigators, Mocha}, + Abstract = {{Simulation divergence due to backflow is a common, but + not fully addressed, problem in three-dimensional + simulations of blood flow in the large vessels. Because + backflow is a naturally occurring physiologic phenomenon, + careful treatment is necessary to realistically model + backflow without artificially altering the local flow + dynamics. In this study, we quantitatively compare three + available methods for treatment of outlets to prevent + backflow divergence in finite element Navier-Stokes + solvers. The methods examined are (1) adding a + stabilization term to the boundary nodes formulation, (2) + constraining the velocity to be normal to the outlet, and + (3) using Lagrange multipliers to constrain the velocity + profile at all or some of the outlets. A modification to + the stabilization method is also discussed. Three model + problems, a short and long cylinder with an expansion, a + right-angle bend, and a patient-specific aorta model, are + used to evaluate and quantitatively compare these methods. + Detailed comparisons are made to evaluate robustness, + stability characteristics, impact on local and global flow + physics, computational cost, implementation effort, and + ease-of-use. The results show that the stabilization method + offers a promising alternative to previous methods, with + reduced effect on both local and global hemodynamics, + improved stability, little-to-no increase in computational + cost, and elimination of the need for tunable + parameters.}}, + Keywords = {Neumann boundary conditions; Outflow stabilization; + Lagrange multipliers; Normal velocity constraint; + Patient-specific blood flow; Flow reversal; Navier-Stokes + FEM solver; Cardiovascular simulation}, + Language = {Anglais}, + affiliation = {Department of Mechanical and Aerospace Engineering - MAE , + Department of Structural Engineering - UCSD , Great Ormond + Street Hospital for Children [London] - GOSH , Cardiac + Unit, Institute of Child Health - UCL , REO - INRIA + Rocquencourt}, + BookTitle = {{Special issue on computational fluid mechanics and + fluid-structure interaction}}, + Publisher = {Springer Verlag (Germany)}, + Pages = {277-291}, + Journal = {Computational Mechanics}, + Volume = {48}, + Number = {3 }, + audience = {internationale }, + collaboration = {EA cardio }, + DOI = {10.1007/s00466-011-0599-0 }, + Year = {2011} +} + +###Article{ moghadam-bazilevs-etal-11, + hal_id = {hal-00650986}, + URL = {http://hal.inria.fr/hal-00650986}, + Title = {{A comparison of outlet boundary treatments for prevention + of backflow divergence with relevance to blood flow + simulations}}, + Author = {Moghadam, M. and Bazilevs, Y. and Hsia, T.-Y. and + Vignon-Clementel, I. and Marsden, A. and Modeling Of + Congenital Hearts Alliance Investigators, Mocha}, + Abstract = {{Simulation divergence due to backflow is a common, but + not fully addressed, problem in three-dimensional + simulations of blood flow in the large vessels. Because + backflow is a naturally occurring physiologic phenomenon, + careful treatment is necessary to realistically model + backflow without artificially altering the local flow + dynamics. In this study, we quantitatively compare three + available methods for treatment of outlets to prevent + backflow divergence in finite element Navier-Stokes + solvers. The methods examined are (1) adding a + stabilization term to the boundary nodes formulation, (2) + constraining the velocity to be normal to the outlet, and + (3) using Lagrange multipliers to constrain the velocity + profile at all or some of the outlets. A modification to + the stabilization method is also discussed. Three model + problems, a short and long cylinder with an expansion, a + right-angle bend, and a patient-specific aorta model, are + used to evaluate and quantitatively compare these methods. + Detailed comparisons are made to evaluate robustness, + stability characteristics, impact on local and global flow + physics, computational cost, implementation effort, and + ease-of-use. The results show that the stabilization method + offers a promising alternative to previous methods, with + reduced effect on both local and global hemodynamics, + improved stability, little-to-no increase in computational + cost, and elimination of the need for tunable + parameters.}}, + Keywords = {Neumann boundary conditions; Outflow stabilization; + Lagrange multipliers; Normal velocity constraint; + Patient-specific blood flow; Flow reversal; Navier-Stokes + FEM solver; Cardiovascular simulation}, + Language = {Anglais}, + affiliation = {Department of Mechanical and Aerospace Engineering - MAE , + Department of Structural Engineering - UCSD , Great Ormond + Street Hospital for Children [London] - GOSH , Cardiac + Unit, Institute of Child Health - UCL , REO - INRIA + Rocquencourt}, + BookTitle = {{Special issue on computational fluid mechanics and + fluid-structure interaction}}, + Publisher = {Springer Verlag (Germany)}, + Pages = {277-291}, + Journal = {Computational Mechanics}, + Volume = {48}, + Number = {3 }, + audience = {internationale }, + collaboration = {EA cardio }, + DOI = {10.1007/s00466-011-0599-0 }, + Year = {2011} +} + +@Article{ moghadam-etal-11, + Title = "A modular numerical method for implicit 0D/3D coupling in + cardiovascular finite element simulations", + Journal = "Journal of Computational Physics", + Volume = "", + Number = "", + Pages = "", + Year = "2012", + Note = "", + ISSN = "0021-9991", + DOI = "10.1016/j.jcp.2012.07.035", + Author = "Moghadam, M.E. and Vignon-Clementel, I.E. and Figliola, R. + and Marsden, A.L.", + Keywords = "Multi-scale modeling" +} + +###Article{ moghadam-etal-11, + Title = "A modular numerical method for implicit 0D/3D coupling in + cardiovascular finite element simulations", + Journal = "Journal of Computational Physics", + Volume = "", + Number = "", + Pages = "", + Year = "2012", + Note = "", + ISSN = "0021-9991", + DOI = "10.1016/j.jcp.2012.07.035", + URL = "http://www.sciencedirect.com/science/article/pii/S0021999112004202", + Author = "Moghadam, M.E. and Vignon-Clementel, I.E. and Figliola, R. + and Marsden, A.L.", + Keywords = "Multi-scale modeling" +} + +@Book{ mohammadi-pironneau-94, + Address = {Paris}, + Author = {Mohammadi, B. and Pironneau, O.}, + Publisher = {Masson}, + Title = {Analysis of the $k$-epsilon turbulence model}, + Year = {1994} +} + +###Book{ mohammadi-pironneau-94, + Address = {Paris}, + Author = {Mohammadi, B. and Pironneau, O.}, + Publisher = {Masson}, + Title = {Analysis of the $k$-epsilon turbulence model}, + Year = {1994} +} + +@Article{ mohammadi2016review, + Title = {Review of numerical methods for simulation of the aortic + root: Present and future directions}, + Author = {Mohammadi, Hossein and Cartier, Raymond and Mongrain, + Rosaire}, + Journal = {International Journal for Computational Methods in + Engineering Science and Mechanics}, + Volume = {17}, + Number = {3}, + Pages = {182--195}, + Year = {2016}, + Publisher = {Taylor \& Francis} +} + +@Article{ moireau-chapelle-11, + Author = {Moireau, P. and Chapelle, D.}, + Title = {Reduced-order {Unscented Kalman Filtering} with + application to parameter identification in + large-dimensional systems}, + Journal = {COCV}, + Pages = {380--405}, + Volume = {17}, + Note = {doi:10.1051/cocv/2010006}, + Year = 2011 +} + +###Article{ moireau-chapelle-11, + Author = {Moireau, P. and Chapelle, D.}, + Title = {Reduced-order {Unscented Kalman Filtering} with + application to parameter identification in + large-dimensional systems}, + Journal = {COCV}, + Pages = {380--405}, + Volume = {17}, + Note = {doi:10.1051/cocv/2010006}, + Year = 2011 +} + +@Article{ moireau-chapelle-11b, + Author = {Moireau, P. and Chapelle, D.}, + Title = {Erratum of article ``Reduced-order {Unscented Kalman + Filtering} with application to parameter identification in + large-dimensional systems''}, + Journal = {COCV}, + Pages = {406--409}, + Volume = {17}, + Note = {doi:10.1051/cocv/2011001}, + Year = 2011 +} + +###Article{ moireau-chapelle-11b, + Author = {Moireau, P. and Chapelle, D.}, + Title = {Erratum of article ``Reduced-order {Unscented Kalman + Filtering} with application to parameter identification in + large-dimensional systems''}, + Journal = {COCV}, + Pages = {406--409}, + Volume = {17}, + Note = {doi:10.1051/cocv/2011001}, + Year = 2011 +} + +@Article{ moireau-chapelle-letallec-08, + Author = {Moireau, P. and Chapelle, D. and Le Tallec, P.}, + Journal = {Computer Methods in Applied Mechanics and Engineering}, + Pages = {659--677}, + Title = {Joint state and parameter estimation for distributed + mechanical systems}, + Volume = 197, + Year = 2008 +} + +###Article{ moireau-chapelle-letallec-08, + Author = {Moireau, P. and Chapelle, D. and Le Tallec, P.}, + Journal = {Computer Methods in Applied Mechanics and Engineering}, + Pages = {659--677}, + Title = {Joint state and parameter estimation for distributed + mechanical systems}, + Volume = 197, + Year = 2008 +} + +@Article{ moireau-chapelle-letallec-09, + Author = {Moireau, P. and Chapelle, D. and Le Tallec, P.}, + date-added = {2009-03-10 11:37:28 -0700}, + date-modified = {2009-03-10 11:37:56 -0700}, + DOI = {10.1088/0266-5611/25/3/035010}, + Journal = {Inverse Problems}, + Month = {March}, + Number = {3}, + Pages = {035010--035035}, + Title = {Filtering for distributed mechanical systems using + position measurements: {P}erspective in medical imaging}, + Volume = {25}, + Year = {2009} +} + +###Article{ moireau-chapelle-letallec-09, + Author = {Moireau, P. and Chapelle, D. and Le Tallec, P.}, + date-added = {2009-03-10 11:37:28 -0700}, + date-modified = {2009-03-10 11:37:56 -0700}, + DOI = {10.1088/0266-5611/25/3/035010}, + Journal = {Inverse Problems}, + Month = {March}, + Number = {3}, + Pages = {035010--035035}, + Title = {Filtering for distributed mechanical systems using + position measurements: {P}erspective in medical imaging}, + Volume = {25}, + Year = {2009}, + bdsk-url-1 = {http://dx.doi.org/10.1088/0266-5611/25/3/035010} +} + +@Article{ moireau-etal-externaltissueestimation-11, + Year = {2012}, + ISSN = {1617-7959}, + Journal = {Biomechanics and Modeling in Mechanobiology}, + DOI = {10.1007/s10237-012-0418-3}, + Title = {Sequential identification of boundary support parameters + in a fluid-structure vascular model using patient image + data}, + Publisher = {Springer-Verlag}, + Keywords = {Nonlinear fluid-structure interaction; Patient-specific + hemodynamics; Image-based data assimilation; Parameter + identification; Support boundary conditions}, + Author = {Moireau, P. and Bertoglio, C. and Xiao, N. and Figueroa, + C.A. and Taylor, C.A. and Chapelle, D. and Gerbeau, J.-F.}, + Pages = {1-22} +} + +###Article{ moireau-etal-externaltissueestimation-11, + Year = {2012}, + ISSN = {1617-7959}, + Journal = {Biomechanics and Modeling in Mechanobiology}, + DOI = {10.1007/s10237-012-0418-3}, + Title = {Sequential identification of boundary support parameters + in a fluid-structure vascular model using patient image + data}, + Publisher = {Springer-Verlag}, + Keywords = {Nonlinear fluid-structure interaction; Patient-specific + hemodynamics; Image-based data assimilation; Parameter + identification; Support boundary conditions}, + Author = {Moireau, P. and Bertoglio, C. and Xiao, N. and Figueroa, + C.A. and Taylor, C.A. and Chapelle, D. and Gerbeau, J.-F.}, + Pages = {1-22} +} + +@Article{ moireau-etal-ident_extiss-12, + Author = {Moireau, P. and Bertoglio, C. and Xiao, N. and Figueroa, + C. and Taylor, C. and Chapelle, D. and Gerbeau, JF.}, + date-modified = {2012-05-01 13:06:48 +0000}, + Journal = {Biomechanics and Modeling in Mechanobiology}, + Title = {Sequential identification of boundary support parameters + in a fluid-structure vascular model using patient image + data}, + Year = {2013}, + Publisher = {Springer Berlin / Heidelberg}, + ISSN = {1617-7959}, + Volume = {12}, + DOI = {10.1007/s10237-012-0418-3}, + Pages = {475-496} +} + +@Article{ moireau-xiao-gerbeau-11, + Author = {Moireau, P. and Xiao, N. and Astorino, M. and Figueroa, + C.A. and Chapelle, D. and Taylor, C.A. and Gerbeau, J-F.}, + Title = {External tissue support and fluid-structure simulation in + blood flows}, + Journal = {Biomechanics and Modeling in Mechanobiology}, + Year = {2011}, + Note = {doi: 10.1007/s10237-011-0289-z} +} + +###Article{ moireau-xiao-gerbeau-11, + Author = {Moireau, P. and Xiao, N. and Astorino, M. and Figueroa, + C.A. and Chapelle, D. and Taylor, C.A. and Gerbeau, J-F.}, + Title = {External tissue support and fluid-structure simulation in + blood flows}, + Journal = {Biomechanics and Modeling in Mechanobiology}, + Year = {2011}, + Note = {doi: 10.1007/s10237-011-0289-z} +} + +@PhdThesis{ moireau08, + Author = {Moireau, P.}, + School = {Ecole Polytechnique}, + Title = {Filtering based data assimilation for second order + hyperbolic PDE. Applications in cardiac mechanics}, + Year = {2008} +} + +###PhdThesis{ moireau08, + Author = {Moireau, P.}, + School = {Ecole Polytechnique}, + Title = {Filtering based data assimilation for second order + hyperbolic PDE. Applications in cardiac mechanics}, + Year = {2008} +} + +@PhdThesis{ moireau2008phd, + Title = {Filtering based data assimilation for second order + hyperbolic PDE. Applications in cardiac mechanics}, + Author = {Moireau, Philippe}, + Year = {2008}, + School = {PhD thesis, Ecole Polytechnique} +} + +@Article{ moireau2009position, + Title = {Filtering for distributed mechanical systems using + position measurements: perspectives in medical imaging}, + Author = {Moireau, Philippe and Chapelle, Dominique and Le Tallec, + Patrick}, + Journal = {Inverse problems}, + Volume = {25}, + Number = {3}, + Pages = {035010}, + Year = {2009}, + Publisher = {IOP Publishing} +} + +@Article{ moireau2011cocv, + Title = {Reduced-order Unscented Kalman Filtering with application + to parameter identification in large-dimensional systems}, + Author = {Moireau, Philippe and Chapelle, Dominique}, + Journal = {ESAIM: Control, Optimisation and Calculus of Variations}, + Volume = {17}, + Number = {02}, + Pages = {380--405}, + Year = {2011}, + Publisher = {Cambridge Univ Press} +} + +@Article{ moireau2012bmmb, + Title = {Sequential identification of boundary support parameters + in a fluid-structure vascular model using patient image + data}, + Author = {Moireau, P. and Bertoglio, C. and Xiao, N. and Figueroa, + C.A. and Taylor, C.A. and Chapelle, D. and Gerbeau, J.-F.}, + Journal = {Biomechanics and Modeling in Mechanobiology}, + Year = {2012}, + Pages = {1-22}, + DOI = {10.1007/s10237-012-0418-3}, + ISSN = {1617-7959}, + Keywords = {Nonlinear fluid-structure interaction; Patient-specific + hemodynamics; Image-based data assimilation; Parameter + identification; Support boundary conditions; FSI}, + Publisher = {Springer-Verlag} +} + +@Article{ moireau2013exttissueestim, + Author = "Moireau, P. and Bertoglio, C. and Xiao, N. and Figueroa, + C. A. and Taylor, C. A. and Chapelle, D. and Gerbeau, + J.-F.", + Title = "Sequential identification of boundary support parameters + in a fluid-structure vascular model using patient image + data", + Journal = "Biomechanics and Modeling in Mechanobiology", + Year = "2013", + Volume = "12", + Number = "3", + Pages = "475--496", + Abstract = "Viscoelastic support has been previously established as a + valuable modeling ingredient to represent the effect of + surrounding tissues and organs in a fluid-structure + vascular model. In this paper, we propose a complete + methodological chain for the identification of the + corresponding boundary support parameters, using patient + image data. We consider distance maps of model to image + contours as the discrepancy driving the data assimilation + approach, which then relies on a combination of (1) state + estimation based on the so-called SDF filtering method, + designed within the realm of Luenberger observers and well + adapted to handling measurements provided by image + sequences, and (2) parameter estimation based on a + reduced-order UKF filtering method which has no need for + tangent operator computations and features natural + parallelism to a high degree. Implementation issues are + discussed, and we show that the resulting computational + effectiveness of the complete estimation chain is + comparable to that of a direct simulation. Furthermore, we + demonstrate the use of this framework in a realistic + application case involving hemodynamics in the thoracic + aorta. The estimation of the boundary support parameters + proves successful, in particular in that direct modeling + simulations based on the estimated parameters are more + accurate than with a previous manual expert calibration. + This paves the way for complete patient-specific + fluid-structure vascular modeling in which all types of + available measurements could be used to estimate additional + uncertain parameters of biophysical and clinical + relevance.", + ISSN = "1617-7940", + DOI = "10.1007/s10237-012-0418-3", + URL = "http://dx.doi.org/10.1007/s10237-012-0418-3" +} + +@Article{ moireau_external_2012, + langid = {english}, + Title = {External Tissue Support and Fluid–Structure Simulation + in Blood Flows}, + Volume = {11}, + ISSN = {1617-7959, 1617-7940}, + URL = {http://link.springer.com/10.1007/s10237-011-0289-z}, + DOI = {10.1007/s10237-011-0289-z}, + Number = {1-2}, + JournalTitle = {Biomechanics and Modeling in Mechanobiology}, + URLDate = {2018-09-19}, + Date = {2012-01}, + Pages = {1-18}, + Author = {Moireau, P. and Xiao, N. and Astorino, M. and Figueroa, C. + A. and Chapelle, D. and Taylor, C. A. and Gerbeau, J.-F.} +} + +@Article{ moireau_joint_2008, + Title = {Joint State and Parameter Estimation for Distributed + Mechanical Systems}, + Volume = {197}, + URL = {http://www.sciencedirect.com/science/article/pii/S0045782507003660}, + Number = {6}, + JournalTitle = {Computer methods in applied mechanics and engineering}, + URLDate = {2016-08-31}, + Year = {2008}, + Pages = {659--677}, + Author = {Moireau, Philippe and Chapelle, Dominique and Le Tallec, + Patrick} +} + +@Article{ moireau_reduced-order_2011, + Title = {Reduced-Order {{Unscented Kalman Filtering}} with + Application to Parameter Identification in + Large-Dimensional Systems}, + Volume = {17}, + URL = {http://www.esaim-cocv.org/articles/cocv/abs/2011/02/cocv0918/cocv0918.html}, + Number = {2}, + JournalTitle = {ESAIM: Control, Optimisation and Calculus of Variations}, + URLDate = {2016-08-29}, + Date = {2011}, + Pages = {380--405}, + Author = {Moireau, Philippe and Chapelle, Dominique} +} + +@Article{ moireau_sequential_2013, + langid = {english}, + Title = {Sequential Identification of Boundary Support Parameters + in a Fluid-Structure Vascular Model Using Patient Image + Data}, + Volume = {12}, + ISSN = {1617-7959, 1617-7940}, + URL = {http://link.springer.com/10.1007/s10237-012-0418-3}, + DOI = {10.1007/s10237-012-0418-3}, + Number = {3}, + JournalTitle = {Biomechanics and Modeling in Mechanobiology}, + URLDate = {2019-02-27}, + Year = {2013-06}, + Pages = {475-496}, + Author = {Moireau, P. and Bertoglio, C. and Xiao, N. and Figueroa, + C. A. and Taylor, C. A. and Chapelle, D. and Gerbeau, + J.-F.} +} + +@PhdThesis{ moireauhdr, + Title = {{Observers for data assimilation - Applications to cardiac + modeling}}, + Author = {Moireau, Philippe}, + URL = {https://tel.archives-ouvertes.fr/tel-01404866}, + School = {{Universit{\'e} Paris Saclay ; Universit{\'e} Paris Sud - + Paris XI}}, + Year = {2016}, + Month = nov, + Keywords = {inverse problems ; control ; observers ; PDE ; cardiac + mechanics ; probl{\`e}mes inverses ; estimation ; + identification ; data assimilation ; control observateurs ; + EDP ; m{\'e}canique cardiaque}, + Type = {Habilitation {\`a} diriger des recherches}, + PDF = {https://tel.archives-ouvertes.fr/tel-01404866/file/habilMoireau.pdf}, + hal_id = {tel-01404866}, + hal_version = {v1} +} + +@InProceedings{ mok-wall-01, + Address = {Barcelona}, + Author = {Mok, D. P. and Wall, W. A. }, + BookTitle = {Trends in computational structural mechanics}, + code = {fsi3}, + Editor = {W.A. Wall, K.U. Bletzinger, K. Schweizerhof}, + Publisher = {CIMNE}, + Title = {Partitioned analysis schemes for the transient interaction + of incompressible flows and nonlinear flexible structures}, + Year = {2001} +} + +###InProceedings{ mok-wall-01, + Address = {Barcelona}, + Author = {Mok, D. P. and Wall, W. A. }, + BookTitle = {Trends in computational structural mechanics}, + code = {fsi3}, + Editor = {W.A. Wall, K.U. Bletzinger, K. Schweizerhof}, + Publisher = {CIMNE}, + Title = {Partitioned analysis schemes for the transient interaction + of incompressible flows and nonlinear flexible structures}, + Year = {2001} +} + +@InProceedings{ mok-wall-ramm-01, + Author = {Mok, D. P. and Wall, W. A. and Ramm, E. }, + BookTitle = {Computational Fluid and Solid Mechanics}, + code = {fsi4}, + Editor = {K.J. Bathe}, + Pages = {1325-1328}, + Publisher = {Elsevier}, + Title = {Accelerated iterative substructuring schemes for + instationary fluid-structure interaction}, + Year = {2001} +} + +###InProceedings{ mok-wall-ramm-01, + Author = {Mok, D. P. and Wall, W. A. and Ramm, E. }, + BookTitle = {Computational Fluid and Solid Mechanics}, + code = {fsi4}, + Editor = {K.J. Bathe}, + Pages = {1325-1328}, + Publisher = {Elsevier}, + Title = {Accelerated iterative substructuring schemes for + instationary fluid-structure interaction}, + Year = {2001} +} + +@Article{ montalba_variability_2018, + Title = {Variability of {{4D}} Flow Parameters When Subjected to + Changes in {{MRI}} Acquisition Parameters Using a Realistic + Thoracic Aortic Phantom}, + Author = {Montalba, Cristian and Urbina, Jesus and Sotelo, Julio and + Andia, Marcelo E. and Tejos, Cristian and Irarrazaval, + Pablo and Hurtado, Daniel E. and Valverde, Israel and + Uribe, Sergio}, + Year = {2018}, + Volume = {79}, + Pages = {1882--1892}, + Journal = {Magnetic resonance in medicine}, + Number = {4} +} + +@Article{ moore_accuracy_1999, + langid = {english}, + Title = {Accuracy of {{Computational Hemodynamics}} in {{Complex + Arterial Geometries Reconstructed}} from {{Magnetic + Resonance Imaging}}}, + Volume = {27}, + ISSN = {1573-9686}, + URL = {https://doi.org/10.1114/1.163}, + DOI = {10.1114/1.163}, + Abstract = {Purpose: Combining computational blood flow modeling with + three-dimensional medical imaging provides a new approach + for studying links between hemodynamic factors and arterial + disease. Although this provides patient-specific + hemodynamic information, it is subject to several potential + errors. This study quantifies some of these errors and + identifies optimal reconstruction methodologies. Methods: A + carotid artery bifurcation phantom of known geometry was + imaged using a commercial magnetic resonance (MR) imager. + Three-dimensional models were reconstructed from the images + using several reconstruction techniques, and steady and + unsteady blood flow simulations were performed. The carotid + bifurcation from a healthy, human volunteer was then imaged + in vivo, and geometric models were reconstructed. Results: + Reconstructed models of the phantom showed good agreement + with the gold standard geometry, with a mean error of + approximately 15\% between the computed wall shear stress + fields. Reconstructed models of the in vivo carotid + bifurcation were unacceptably noisy, unless lumenal profile + smoothing and approximating surface splines were used. + Conclusions: All reconstruction methods gave acceptable + results for the phantom model, but in vivo models appear to + require smoothing. If proper attention is paid to smoothing + and geometric fidelity issues, models reconstructed from MR + images appear to be suitable for use in computational + studies of in vivo hemodynamics. © 1999 Biomedical + Engineering Society.PAC99: 8719Uv, 8761-c, 0705Pj, 8710+e}, + Number = {1}, + JournalTitle = {Annals of Biomedical Engineering}, + ShortJournal = {Annals of Biomedical Engineering}, + URLDate = {2019-02-25}, + Date = {1999-01-01}, + Pages = {32-41}, + Author = {Moore, J. A. and Steinman, D. A. and Holdsworth, D. W. and + Ethier, C. R.} +} + +###Article{ moore_accuracy_1999, + langid = {english}, + Title = {Accuracy of {{Computational Hemodynamics}} in {{Complex + Arterial Geometries Reconstructed}} from {{Magnetic + Resonance Imaging}}}, + Volume = {27}, + ISSN = {1573-9686}, + URL = {https://doi.org/10.1114/1.163}, + DOI = {10.1114/1.163}, + Abstract = {Purpose: Combining computational blood flow modeling with + three-dimensional medical imaging provides a new approach + for studying links between hemodynamic factors and arterial + disease. Although this provides patient-specific + hemodynamic information, it is subject to several potential + errors. This study quantifies some of these errors and + identifies optimal reconstruction methodologies. Methods: A + carotid artery bifurcation phantom of known geometry was + imaged using a commercial magnetic resonance (MR) imager. + Three-dimensional models were reconstructed from the images + using several reconstruction techniques, and steady and + unsteady blood flow simulations were performed. The carotid + bifurcation from a healthy, human volunteer was then imaged + in vivo, and geometric models were reconstructed. Results: + Reconstructed models of the phantom showed good agreement + with the gold standard geometry, with a mean error of + approximately 15\% between the computed wall shear stress + fields. Reconstructed models of the in vivo carotid + bifurcation were unacceptably noisy, unless lumenal profile + smoothing and approximating surface splines were used. + Conclusions: All reconstruction methods gave acceptable + results for the phantom model, but in vivo models appear to + require smoothing. If proper attention is paid to smoothing + and geometric fidelity issues, models reconstructed from MR + images appear to be suitable for use in computational + studies of in vivo hemodynamics. © 1999 Biomedical + Engineering Society.PAC99: 8719Uv, 8761-c, 0705Pj, 8710+e}, + Number = {1}, + JournalTitle = {Annals of Biomedical Engineering}, + ShortJournal = {Annals of Biomedical Engineering}, + URLDate = {2019-02-25}, + Year = {1999-01-01}, + Pages = {32-41}, + Author = {Moore, J. A. and Steinman, D. A. and Holdsworth, D. W. and + Ethier, C. R.} +} + +@Article{ moore_computational_1997, + Title = {Computational Blood Flow Modelling: Errors Associated with + Reconstructing Finite Element Models from Magnetic + Resonance Images}, + Volume = {31}, + ShortTitle = {Computational Blood Flow Modelling}, + Number = {2}, + JournalTitle = {Journal of Biomechanics}, + Date = {1997}, + Pages = {179--184}, + Author = {Moore, Jennifer A. and Steinman, David A. and Ethier, C. + Ross} +} + +###Article{ moore_computational_1997, + Title = {Computational Blood Flow Modelling: Errors Associated with + Reconstructing Finite Element Models from Magnetic + Resonance Images}, + Volume = {31}, + ShortTitle = {Computational Blood Flow Modelling}, + Number = {2}, + JournalTitle = {Journal of Biomechanics}, + Year = {1997}, + Pages = {179--184}, + Author = {Moore, Jennifer A. and Steinman, David A. and Ethier, C. + Ross} +} + +@Article{ moran_flow_1982, + Title = {A Flow Velocity Zeugmatographic Interlace for {{NMR}} + Imaging in Humans}, + Author = {Moran, Paul R.}, + Year = {1982}, + Volume = {1}, + Pages = {197--203}, + Journal = {Magnetic resonance imaging}, + Number = {4} +} + +@Book{ morand-ohayon-92, + Address = {Paris}, + Author = {Morand, H. and Ohayon, R.}, + Publisher = {Masson}, + Series = {Recherches en Math{\'e}matiques Appliqu{\'e}es}, + Title = {Interactions fluides-structures}, + Volume = {23}, + Year = {1992} +} + +###Book{ morand-ohayon-92, + Address = {Paris}, + Author = {Morand, H. and Ohayon, R.}, + Publisher = {Masson}, + Series = {Recherches en Math{\'e}matiques Appliqu{\'e}es}, + Title = {Interactions fluides-structures}, + Volume = {23}, + Year = {1992} +} + +@Book{ morand-ohayon-95, + Author = {Morand, H. and Ohayon, R.}, + Publisher = {John Wiley \& Sons}, + Title = {Fluid-Structure Interaction: Applied Numerical Methods}, + Year = {1995} +} + +###Book{ morand-ohayon-95, + Author = {Morand, H. and Ohayon, R.}, + Publisher = {John Wiley \& Sons}, + Title = {Fluid-Structure Interaction: Applied Numerical Methods}, + Year = {1995} +} + +@Article{ morbiducci_inflow_2013, + Title = {Inflow Boundary Conditions for Image-Based Computational + Hemodynamics: Impact of Idealized versus Measured Velocity + Profiles in the Human Aorta}, + Volume = {46}, + ShortTitle = {Inflow Boundary Conditions for Image-Based Computational + Hemodynamics}, + Number = {1}, + JournalTitle = {Journal of biomechanics}, + Year = {2013}, + Pages = {102--109}, + Author = {Morbiducci, Umberto and Ponzini, Raffaele and Gallo, Diego + and Bignardi, Cristina and Rizzo, Giovanna} +} + +@Article{ morbiducci_outflow_2010, + Title = {Outflow {{Conditions}} for {{Image}}-{{Based Hemodynamic + Models}} of the {{Carotid Bifurcation}}: {{Implications}} + for {{Indicators}} of {{Abnormal Flow}}}, + Volume = {132}, + ISSN = {0148-0731}, + URL = {http://dx.doi.org/10.1115/1.4001886}, + DOI = {10.1115/1.4001886}, + ShortTitle = {Outflow {{Conditions}} for {{Image}}-{{Based Hemodynamic + Models}} of the {{Carotid Bifurcation}}}, + Abstract = {Computational fluid dynamics (CFD) models have become very + effective tools for predicting the flow field within the + carotid bifurcation, and for understanding the relationship + between local hemodynamics, and the initiation and + progression of vascular wall pathologies. As prescribing + proper boundary conditions can affect the solutions of the + equations governing blood flow, in this study, we + investigated the influence to assumptions regarding the + outflow boundary conditions in an image-based CFD model of + human carotid bifurcation. Four simulations were conducted + with identical geometry, inlet flow rate, and fluid + parameters. In the first case, a physiological time-varying + flow rate partition at branches along the cardiac cycle was + obtained by coupling the 3D model of the carotid + bifurcation at outlets with a lumped-parameter model of the + downstream vascular network. Results from the coupled model + were compared with those obtained by imposing three fixed + flow rate divisions (50/50, 60/40, and 70/30) between the + two branches of the isolated 3D model of the carotid + bifurcation. Three hemodynamic wall parameters were + considered as indicators of vascular wall dysfunction. Our + findings underscore that the overall effect of the + assumptions done in order to simulate blood flow within the + carotid bifurcation is mainly in the hot-spot modulation of + the hemodynamic descriptors of atherosusceptible areas, + rather than in their distribution. In particular, the more + physiological, time-varying flow rate division deriving + from the coupled simulation has the effect of damping wall + shear stress (WSS) oscillations (differences among the + coupled and the three fixed flow partition models are up to + 37.3\% for the oscillating shear index). In conclusion, we + recommend to adopt more realistic constraints, for example, + by coupling models at different scales, as in this study, + when the objective is the outcome prediction of alternate + therapeutic interventions for individual patients, or to + test hypotheses related to the role of local fluid dynamics + and other biomechanical factors in vascular diseases.}, + Number = {9}, + JournalTitle = {Journal of Biomechanical Engineering}, + ShortJournal = {J Biomech Eng}, + URLDate = {2019-03-09}, + Year = {2010-08-17}, + Pages = {091005-091005-11}, + Author = {Morbiducci, Umberto and Gallo, Diego and Massai, Diana and + Consolo, Filippo and Ponzini, Raffaele and Antiga, Luca and + Bignardi, Cristina and Deriu, Marco A. and Redaelli, + Alberto} +} + +@Book{ moreau-90, + Annote = {mhd, duct flow}, + Author = {Moreau, R.}, + code = {mhd17}, + Publisher = {Kluwer Academic Publishers}, + Title = {Magnetohydrodynamics}, + Year = {1990} +} + +###Book{ moreau-90, + Annote = {mhd, duct flow}, + Author = {Moreau, R.}, + code = {mhd17}, + Publisher = {Kluwer Academic Publishers}, + Title = {Magnetohydrodynamics}, + Year = {1990} +} + +@InCollection{ moreau-92, + Author = {Moreau, R.}, + BookTitle = {Trait{\'e} de G{\'e}nie {\'e}lectrique}, + code = {mhd39}, + Pages = {D2950-3 -- D2950-30}, + Publisher = {Editions Techniques de l'ing{\'e}nieur}, + Title = {Ecoulement d'un m{\'e}tal liquide en pr{\'e}sence d'un + champ magn{\'e}tique}, + Volume = {D4}, + Year = {1992} +} + +###InCollection{ moreau-92, + Author = {Moreau, R.}, + BookTitle = {Trait{\'e} de G{\'e}nie {\'e}lectrique}, + code = {mhd39}, + Pages = {D2950-3 -- D2950-30}, + Publisher = {Editions Techniques de l'ing{\'e}nieur}, + Title = {Ecoulement d'un m{\'e}tal liquide en pr{\'e}sence d'un + champ magn{\'e}tique}, + Volume = {D4}, + Year = {1992} +} + +@Article{ moreau-evans-84, + Author = {Moreau, R. and Evans, J.W.}, + Journal = {J. Electrochem. Soc.: Electrochem. Sci. Tech.}, + Number = {10}, + Pages = {2251-2259}, + Title = {An analysis of the hydrodynamics of aluminium in reduction + cells}, + Volume = {131}, + Year = {1984} +} + +###Article{ moreau-evans-84, + Author = {Moreau, R. and Evans, J.W.}, + Journal = {J. Electrochem. Soc.: Electrochem. Sci. Tech.}, + Number = {10}, + Pages = {2251-2259}, + Title = {An analysis of the hydrodynamics of aluminium in reduction + cells}, + Volume = {131}, + Year = {1984} +} + +@Article{ moreau-ziegler-88, + Author = {Moreau, R. and Ziegler, D.}, + Journal = {Metal. Trans. B.}, + Pages = {737--744}, + Title = {The Moreau-Evans hydrodynamic model applied to actual + Hall-H{\'e}roult cells}, + Volume = {19B}, + Year = {1988} +} + +###Article{ moreau-ziegler-88, + Author = {Moreau, R. and Ziegler, D.}, + Journal = {Metal. Trans. B.}, + Pages = {737--744}, + Title = {The Moreau-Evans hydrodynamic model applied to actual + Hall-H{\'e}roult cells}, + Volume = {19B}, + Year = {1988} +} + +@Article{ morganti2013aorticrootfrom2d, + Title = {Aortic root 3D parametric morphological model from 2D-echo + images}, + Author = {Morganti, S. and Valentini, A. and Favalli, V. and Serio, + A. and Gambarin, F. and Vella, D. and Mazzocchi, L. and + Massetti, M. and Auricchio, F. and Arbustini, E.}, + Journal = {Computers in biology and medicine}, + Volume = {43}, + Number = {12}, + Pages = {2196--2204}, + Year = {2013}, + Publisher = {Elsevier} +} + +@Article{ mortchelewicz_flutter_2000, + langid = {english}, + Title = {Flutter Simulations}, + Volume = {4}, + ISSN = {12709638}, + URL = {https://linkinghub.elsevier.com/retrieve/pii/S1270963800001164}, + DOI = {10.1016/S1270-9638(00)00116-4}, + Number = {1}, + JournalTitle = {Aerospace Science and Technology}, + URLDate = {2019-08-24}, + Date = {2000-01}, + Pages = {33-40}, + Author = {Mortchéléwicz, Guy Daniel} +} + +@PhdThesis{ mouro-96, + Author = {Mouro, J.}, + School = {Ecole Polytechnique, France}, + Title = {Interactions fluide structure en grands d{\'e}placements. + R{\'e}solution num{\'e}rique et application aux composants + hydrauliques automobiles}, + Year = {1996} +} + +###PhdThesis{ mouro-96, + Author = {Mouro, J.}, + School = {Ecole Polytechnique, France}, + Title = {Interactions fluide structure en grands d{\'e}placements. + R{\'e}solution num{\'e}rique et application aux composants + hydrauliques automobiles}, + Year = {1996} +} + +@Book{ mpi, + Author = {Gropp, W. and Huss-Lederman, S. and Lumsdaine, A. and + Lusk, E. and Nitzberg, B. and Saphir, W. and Snir, M.}, + Edition = {Second}, + Publisher = {The MIT Press}, + Title = {MPI: The Complete Reference (Vol. 2), Vol. 2 - The MPI-2 + Extensions}, + Year = {1998} +} + +###Book{ mpi, + Author = {Gropp, W. and Huss-Lederman, S. and Lumsdaine, A. and + Lusk, E. and Nitzberg, B. and Saphir, W. and Snir, M.}, + Edition = {Second}, + Publisher = {The MIT Press}, + Title = {MPI: The Complete Reference (Vol. 2), Vol. 2 - The MPI-2 + Extensions}, + Year = {1998} +} + +@Article{ muhler_evaluation_1993, + Title = {Evaluation of Aortic Coarctation after Surgical Repair: + Role of Magnetic Resonance Imaging and {{Doppler}} + Ultrasound.}, + Volume = {70}, + ShortTitle = {Evaluation of Aortic Coarctation after Surgical Repair}, + Number = {3}, + JournalTitle = {Heart}, + Year = {1993}, + Pages = {285--290}, + Author = {Mühler, E. G. and Neuerburg, Jorg M. and Rüben, A. and + Grabitz, Ralf G. and Günther, R. W. and Messmer, Bruno J. + and von Bernuth, Gotz}, + Options = {useprefix=true} +} + +@Article{ muller_reduced-order_2018, + Title = {Reduced-{{Order Unscented Kalman Filter}} with + Observations in the {{Frequency Domain}}: {{Application}} + to {{Computational Hemodynamics}}}, + ShortTitle = {Reduced-{{Order Unscented Kalman Filter}} with + Observations in the {{Frequency Domain}}}, + JournalTitle = {IEEE Transactions on Biomedical Engineering}, + Year = {2018}, + Author = {M\"uller, Lucas O. and Caiazzo, Alfonso and Blanco, Pablo + J.} +} + +@InProceedings{ munoz2010analysis, + Title = {Analysis of the helix and transverse angles of the muscle + fibers in the myocardium based on diffusion tensor + imaging}, + Author = {Mu\~noz, Emma and C{\'a}rdenes, Rub{\'e}n and Frangi, + Alejandro F}, + BookTitle = {Engineering in Medicine and Biology Society (EMBC), 2010 + Annual International Conference of the IEEE}, + Pages = {5720--5723}, + Year = {2010}, + Organization = {IEEE} +} + +@Article{ murata-secomb-88, + Annote = {red blood cell}, + Author = {Murata, T. and Secomb, T.W.}, + code = {cel19}, + Journal = {Biorheology}, + Pages = {113--122}, + Title = {Effects of shear rate on rouleau formation in simple shear + flow}, + Volume = {25}, + Year = {1988} +} + +###Article{ murata-secomb-88, + Annote = {red blood cell}, + Author = {Murata, T. and Secomb, T.W.}, + code = {cel19}, + Journal = {Biorheology}, + Pages = {113--122}, + Title = {Effects of shear rate on rouleau formation in simple shear + flow}, + Volume = {25}, + Year = {1988} +} + +@Book{ murphy2012machine, + Title = {Machine learning: a probabilistic perspective}, + Author = {Murphy, Kevin P}, + Year = {2012}, + Publisher = {MIT press} +} + +@Article{ nacif2012jcmr, + Title = {Gadolinium-enhanced cardiovascular magnetic resonance: + administered dose in relationship to united states food and + drug administration (FDA) guidelines}, + Author = {Nacif, Marcelo S. and Arai, Andrew E. and Lima, Joao A.C. + and Bluemke, David A.}, + Journal = {Journal of Cardiovascular Magnetic Resonance}, + Year = {2012}, + Number = {18}, + Volume = {14}, + File = {:Nacif2012JCMR.pdf:PDF}, + Keywords = {Contrast media, Gadolinium, Heart, Magnetic resonance + imaging}, + review = {Nacif et al. Journal of Cardiovascular Magnetic Resonance + 2012, 14:18 http://www.jcmr-online.com/content/14/1/18 + + RESEARCH Open Access + + Gadolinium-enhanced cardiovascular magnetic resonance: + administered dose in relationship to united states food and + drug administration (FDA) guidelines Marcelo S Nacif1,2,3, + Andrew E Arai4, Joao AC Lima2 and David A Bluemke1,5* + + Abstract + + Purpose: Myocardial late gadolinium enhancement was + originally validated using higher than label-recommended + doses of gadolinium chelate. The objective of this study + was to evaluate available evidence for various gadolinium + dosing regimens used for CMR. The relationship of + gadolinium dose warnings (due to nephrogenic systemic + fibrosis) announced in 2008 to gadolinium dosing regimens + was also examined. + + Methods: We conducted a meta-analysis of peer reviewed + publications from January, 2004 to December, 2010. Major + subject search headings (MeSh) terms from the National + Library of Medicine?s PubMed were: contrast media, + gadolinium, heart, magnetic resonance imaging; searches + were limited to human studies with abstracts published in + English. Case reports, review articles, editorials, MRA + related papers and all reports that did not indicate + gadolinium type or weight-based dose were excluded. For all + included references, full text was available to determine + the total administered gadolinium dose on a per kg basis. + Average and median dose values were weighted by the number + of subjects in each study. + + Results: 399 publications were identified in PubMed; 233 + studies matched the inclusion criteria, encompassing 19,934 + patients with mean age 54.2 ± 11.4 (range 9.3 to 76 + years). 34 trials were related to perfusion testing and 199 + to myocardial late gadolinium enhancement. In 2004, the + weighted-median and weighted-mean contrast dose were 0.15 + and 0.16 ± 0.06 mmol/kg, respectively. Median contrast + doses for 2005-2010 were: 0.2 mmol/kg for all years, + respectively. Mean contrast doses for the years 2005-2010 + were: 0.19 ± 0.03, 0.18 ± 0.04, 0.18 ± 0.10, 0.18 ± + 0.03, 0.18 ± 0.04 and 0.18 ± 0.04 mmol/kg, respectively + (p for trend, NS). Gadopentetate dimeglumine was the most + frequent gadolinium type [114 (48.9%) studies]. No change + in mean gadolinium dose was present before, versus after + the Food and Drug Administration (FDA) black box warning (p + > 0.05). Three multi-center dose ranging trials have been + published for cardiac {MRI} applications. + + Conclusion: CMR studies in the peer-reviewed published + literature routinely use higher gadolinium doses than + regulatory agencies indicated in the package leaflet. + Clinical trials should be supported to determine the + appropriate doses of gadolinium for CMR studies. + + Keywords: Contrast media, Gadolinium, Heart, Magnetic + resonance imaging + + * Correspondence: bluemked@nih.gov 1Radiology and Imaging + Sciences - National Institutes of Health Clinical Center, + Bethesda, MD, USA Full list of author information is + available at the end of the article + + © 2012 Nacif et al; licensee BioMed Central Ltd. This is + an Open Access article distributed under the terms of the + Creative Commons Attribution License + (http://creativecommons.org/licenses/by/2.0), which permits + unrestricted use, distribution, and reproduction in any + medium, provided the original work is properly cited.}, + URL = {http://www.jcmr-online.com/content/14/1/18} +} + +@Article{ nagler-bertoglio-gee-wall-13, + Author = {Nagler, A. and Bertoglio, C. and Gee, M. and Wall, W.}, + Title = {{Personalization of cardiac fiber orientations from image + data using the Unscented Kalman Filter}}, + Year = {2013}, + Pages = {132--140}, + Journal = {LNCS 7945, 7th Int. Conference for Functional Imaging and + Modeling of the Heart} +} + +@InBook{ nagler2013, + Author = "Nagler, Andreas and Bertoglio, Crist{\'o}bal and Gee, + Michael and Wall, Wolfgang", + Chapter = "Personalization of Cardiac Fiber Orientations from Image + Data Using the Unscented Kalman Filter", + Title = "Functional Imaging and Modeling of the Heart: 7th + International Conference, FIMH 2013, London, UK, June + 20-22, 2013. Proceedings", + Year = "2013", + Publisher = "Springer Berlin Heidelberg", + Address = "Berlin, Heidelberg", + Pages = "132--140", + ISBN = "978-3-642-38899-6", + DOI = "10.1007/978-3-642-38899-6_16", + URL = "http://dx.doi.org/10.1007/978-3-642-38899-6_16" +} + +@Article{ nasiraei-moghaddam_factors_2004, + Title = {Factors Affecting the Accuracy of Pressure Measurements in + Vascular Stenoses from Phase-Contrast {{MRI}}}, + Volume = {52}, + Number = {2}, + JournalTitle = {Magnetic Resonance in Medicine: An Official Journal of the + International Society for Magnetic Resonance in Medicine}, + Year = {2004}, + Pages = {300--309}, + Author = {Nasiraei-Moghaddam, Abbas and Behrens, Geoffrey and + Fatouraee, Nasser and Agarwal, Ramesh and Choi, Eric T. and + Amini, Amir A.} +} + +@InCollection{ natalini-99, + Author = {Natalini, R.}, + BookTitle = {Analysis of systems of conservation laws}, + Editor = {Chapman $\&$ Hall/CRC}, + Pages = {128--198}, + Publisher = { Boca Raton, FL}, + Title = {Recent results on hyperbolic relaxation problems }, + Year = {1999} +} + +###InCollection{ natalini-99, + Author = {Natalini, R.}, + BookTitle = {Analysis of systems of conservation laws}, + Editor = {Chapman $\&$ Hall/CRC}, + Pages = {128--198}, + Publisher = { Boca Raton, FL}, + Title = {Recent results on hyperbolic relaxation problems }, + Year = {1999} +} + +@Book{ netter-atlas-00, + Title = {{Atlas of Human Anatomy}}, + Author = {Netter, F.H.}, + Year = {2000}, + Publisher = {Saunders}, + Edition = {10th} +} + +###Book{ netter-atlas-00, + Title = {{Atlas of Human Anatomy}}, + Author = {Netter, F.H.}, + Year = {2000}, + Publisher = {Saunders}, + Edition = {10th} +} + +@Article{ nguyen-68, + Annote = {mhd, stability}, + Author = {Nguyen, X.}, + code = {mhd28}, + Journal = {C.R. Acad. Sc. Paris}, + Title = {Etude th{\'e}orique et exp{\'e}rimentale sur mod{\`e}le + hydraulique des instabilit{\'e}s de {Rayleigh-Taylor} en + magn{\'e}tohydrodynamique}, + Volume = {266}, + Year = {1968} +} + +###Article{ nguyen-68, + Annote = {mhd, stability}, + Author = {Nguyen, X.}, + code = {mhd28}, + Journal = {C.R. Acad. Sc. Paris}, + Title = {Etude th{\'e}orique et exp{\'e}rimentale sur mod{\`e}le + hydraulique des instabilit{\'e}s de {Rayleigh-Taylor} en + magn{\'e}tohydrodynamique}, + Volume = {266}, + Year = {1968} +} + +@Article{ nguyen2009adaptive, + Title = {Adaptive anisotropic meshing for steady + convection-dominated problems}, + Author = {Nguyen, Hoa and Gunzburger, Max and Ju, Lili and Burkardt, + John}, + Journal = {Computer Methods in Applied Mechanics and Engineering}, + Volume = {198}, + Number = {37}, + Pages = {2964--2981}, + Year = {2009}, + Publisher = {Elsevier} +} + +@Article{ nguyen2013, + Title = {{In vivo three-dimensional high resolution cardiac + diffusion-weighted MRI: A motion compensated + diffusion-prepared balanced steady-state free precession + approach}}, + Author = {Nguyen, C. and Fan, Z. and Sharif, B. and He, Y. and + Dharmakumar, R. and Berman, D. S. and Li, D.}, + Journal = {Magnetic Resonance in Medicine}, + Volume = {72}, + Number = {5}, + Pages = {1257--1267}, + Year = {2013}, + Publisher = {Wiley Online Library} +} + +@Article{ nguyen2014jcmr, + Title = {In vivo contrast free chronic myocardial infarction + characterization using diffusion-weighted cardiovascular + magnetic resonance.}, + Author = {Nguyen, Christopher and Fan, Zhaoyang and Xie, Yibin and + Dawkins, James and Tseliou, Eleni and Bi, Xiaoming and + Sharif, Behzad and Dharmakumar, Rohan and Marb{\'{a}}n, + Eduardo and Li, Debiao}, + Journal = {J Cardiovasc Magn Reson}, + Year = {2014}, + Pages = {68}, + Volume = {16}, + Abstract = {Despite the established role of late gadolinium + enhancement (LGE) cardiovascular magnetic resonance (CMR) + in characterizing chronic myocardial infarction (MI), a + significant portion of chronic MI patients are + contraindicative for the use of contrast agents. One + promising alternative contrast free technique is diffusion + weighted CMR (dwCMR), which has been shown ex vivo to be + sensitive to myocardial fibrosis. We used a recently + developed in vivo dwCMR in chronic MI pigs to compare + apparent diffusion coefficient (ADC) maps with LGE imaging + for infarct characterization.In eleven mini pigs, chronic + MI was induced by complete occlusion of the left anterior + descending artery for 150 minutes. LGE, cine, and dwCMR + imaging was performed 8 weeks post MI. ADC maps were + derived from three orthogonal diffusion directions + (b?=?400 s/mm2) and one non-diffusion weighted image. Two + semi-automatic infarct classification methods, threshold + and full width half max (FWHM), were performed in both LGE + and ADC maps. Regional wall motion (RWM) analysis was + performed and compared to ADC maps to determine if any + observed ADC change was significantly influenced by bulk + motion.ADC of chronic MI territories was significantly + increased (threshold: 2.4?±?0.3 ?m2/ms, FWHM: + 2.4?±?0.2 ?m2/ms) compared to remote myocardium + (1.4?±?0.3 ?m2/ms). RWM was significantly reduced + (threshold: 1.0?±?0.4 mm, FWHM: 0.9?±?0.4 mm) in + infarcted regions delineated by ADC compared to remote + myocardium (8.3?±?0.1 mm). ADC-derived infarct volume and + location had excellent agreement with LGE. Both LGE and ADC + were in complete agreement when identifying transmural + infarcts. Additionally, ADC was able to detect + LGE-delineated infarcted segments with high sensitivity, + specificity, PPV, and NPV. (threshold: 0.88, 0.93, 0.87, + and 0.94, FWHM: 0.98, 0.97, 0.93, and 0.99, + respectively).In vivo diffusion weighted CMR has potential + as a contrast free alternative for LGE in characterizing + chronic MI.}, + DOI = {10.1186/s12968-014-0068-y}, + Language = {eng}, + medline-pst = {epublish}, + owner = {stoeckc}, + pii = {s12968-014-0068-y}, + pmid = {25230598}, + timestamp = {2015.07.24}, + URL = {http://dx.doi.org/10.1186/s12968-014-0068-y} +} + +@Article{ nguyen2014mrm, + Title = {In vivo three-dimensional high resolution cardiac + diffusion-weighted MRI: a motion compensated + diffusion-prepared balanced steady-state free precession + approach.}, + Author = {Nguyen, Christopher and Fan, Zhaoyang and Sharif, Behzad + and He, Yi and Dharmakumar, Rohan and Berman, Daniel S. and + Li, Debiao}, + Journal = {Magn Reson Med}, + Year = {2014}, + Month = {Nov}, + Number = {5}, + Pages = {1257--1267}, + Volume = {72}, + Abstract = {The aim of this study was to implement and optimize a + novel application of diffusion-prepared balanced + steady-state free precession (bSSFP) to perform in vivo + cardiac diffusion-weighted MRI.Diffusion-prepared sequences + have the flexibility to diffusion encode with a multi-shot + image readout. The diffusion preparation was optimized to + reduce sensitivity to cardiac bulk motion with second order + motion compensation (M1M2). The image readout consisted of + a three-dimensional (3D) centric-encoded segmented bSSFP + acquisition that incorporated a prospective navigator. Ten + healthy subjects were scanned twice using the proposed + technique diffusion preparation with and without M1M2 using + three orthogonal directions under varying off-resonance + conditions. Trace apparent diffusion coefficient (trADC) + maps and the left ventricular (LV) trADC were + calculated.M1M2 diffusion-prepared scans resulted in LV + trADC values of 1.5 ± 0.4 × 10(-3) mm(2)/s that were + reproducible yielding no statistical differences (P = + 0.54). M1M2 diffusion-prepared images showed no ghosting + artifacts and/or signal fallout. The non-motion-compensated + diffusion-prepared scans yielded LV trADC values of 6.6 ± + 0.9 × 10(-3) mm(2)/s and diffusion-prepared images with + severe bulk motion-induced artifacts.We developed a novel + free-breathing bulk motion compensated diffusion-prepared + 3D segmented bSSFP technique able to perform in vivo + cardiac diffusion-weighted MRI on a conventional clinical + MR scanner.}, + DOI = {10.1002/mrm.25038}, + Institution = {Biomedical Imaging Research Institute, Cedars-Sinai + Medical Center, Los Angeles, California, USA; Department of + Bioengineering, University of California Los Angeles, Los + Angeles, California, USA.}, + Language = {eng}, + medline-pst = {ppublish}, + owner = {stoeckc}, + pmid = {24259113}, + timestamp = {2015.07.24}, + URL = {http://dx.doi.org/10.1002/mrm.25038} +} + +@Book{ nichols-orourke-05, + Title = {McDonald's blood flow in arteries: theoretical, + experimental and clinical principles}, + Author = {Nichols, W.W. and O'Rourke, M.F. and Hartley, C.}, + Volume = {340809418}, + Year = {2005}, + Publisher = {Hodder Arnold London} +} + +###Book{ nichols-orourke-05, + Title = {McDonald's blood flow in arteries: theoretical, + experimental and clinical principles}, + Author = {Nichols, W.W. and O'Rourke, M.F. and Hartley, C.}, + Volume = {340809418}, + Year = {2005}, + Publisher = {Hodder Arnold London} +} + +@Book{ nichols_mcdonalds_2011, + langid = {english}, + Location = {{London}}, + Title = {{{McDonald}}'s {{Blood Flow}} in {{Arteries}}, {{Sixth + Edition}}: {{Theoretical}}, {{Experimental}} and {{Clinical + Principles}}.}, + ISBN = {978-1-4441-2878-9}, + URL = {http://public.eblib.com/choice/publicfullrecord.aspx?p=956467}, + ShortTitle = {{{McDonald}}'s {{Blood Flow}} in {{Arteries}}, {{Sixth + Edition}}}, + Abstract = {ForewordMichael TaylorForewordDavid A. Kass and Myron L. + WeisfeldtPrefaceList of AbbreviationsIntroductionThe nature + of flow of a liquidProperties of the arterial wall: + theoryProperties of the arterial wall: practiceEndothelial + functionGeneral principles for measuring arterial + wavesPulsatile pressure-flow relationsUltrasoundWave + reflectionsContours of pressure and flow waves in + arteriesPrinciples of recording and analysis of arterial + waveformsVascular impedanceAortic input impedance as + ventricular loadCoupling of the left ventricle with the + systemic circulation: implications to cardiac + failureCardiac failure: clinical implicationsThe pulmonary + circulationThe coronary circulationSpecial + circulationsAgingHypertensionInterpretation of blood + pressure in epidemiological studies and clinical + trialsArterial biomarkersAtherosclerosisSpecific arterial + diseaseGeneralized and metabolic diseaseTherapeutic + strategiesExerciseCentral arterial pressureLifestyle and + environmentPressure pulse waveform analysisBibliography.}, + Publisher = {{CRC Press}}, + URLDate = {2019-02-06}, + Year = {2011}, + Author = {Nichols, Wilmer and O'Rourke, Michael and Vlachopoulos, + Charalambos}, + Note = {OCLC: 1027501178} +} + +@Article{ niederer2006quantitative, + Title = {A quantitative analysis of cardiac myocyte relaxation: a + simulation study}, + Author = {Niederer, SA and Hunter, PJ and Smith, NP}, + Journal = {Biophysical journal}, + Volume = {90}, + Number = {5}, + Pages = {1697--1722}, + Year = {2006}, + Publisher = {Elsevier} +} + +@Article{ niederer_analyses_2012, + Title = {Analyses of the Redistribution of Work following Cardiac + Resynchronisation Therapy in a Patient Specific Model}, + Author = {Niederer, S.A. and Lamata, P. and Plank, G. and + Chinchapatnam, P. and Ginks, M. and Rhode, K. and Rinaldi, + C.A. and Razavi, R. and Smith, N.P.}, + Journal = {{PLoS} {ONE}}, + Year = {2012}, + Month = aug, + Number = {8}, + Pages = {e43504}, + Volume = {7}, + DOI = {10.1371/journal.pone.0043504}, + Editor = {Bauer, Wolfgang Rudolf}, + File = {Niederer_2012.pdf:/home/hoermann/.zotero/zotero/krpbc0h6.default/zotero/storage/8THVZ4MD/Niederer_2012.pdf:application/pdf}, + ISSN = {1932-6203}, + Language = {en}, + URL = {http://dx.plos.org/10.1371/journal.pone.0043504}, + URLDate = {2014-11-28} +} + +@Article{ niederer_biophysical_2012, + Title = {Biophysical Modeling to Simulate the Response to Multisite + Left Ventricular Stimulation Using a Quadripolar Pacing + Lead}, + Author = {Niederer, S.A. and Shetty, A.K. and Plank, G. and Bostock, + J. and Razavi, R. and Smith, N.P. and Rinaldi, C.A.}, + Journal = {Pacing and Clinical Electrophysiology}, + Year = {2012}, + Month = feb, + Number = {2}, + Pages = {204--214}, + Volume = {35}, + DOI = {10.1111/j.1540-8159.2011.03243.x}, + File = {Niederer2012.pdf:/home/hoermann/.zotero/zotero/krpbc0h6.default/zotero/storage/XC4X2ZT5/Niederer2012.pdf:application/pdf}, + ISSN = {01478389}, + Language = {en}, + ShortTitle = {Biophysical Modeling to Simulate the Response to Multisite + Left Ventricular Stimulation Using a Quadripolar Pacing + Lead}, + URL = {http://doi.wiley.com/10.1111/j.1540-8159.2011.03243.x}, + URLDate = {2014-11-28} +} + +@Article{ niederer_length-dependent_2011, + Title = {Length-dependent tension in the failing heart and the + efficacy of cardiac resynchronization therapy}, + Author = {Niederer, S. A. and Plank, G. and Chinchapatnam, P. and + Ginks, M. and Lamata, P. and Rhode, K.S. and Rinaldi, C.A. + and Razavi, R. and Smith, N.P.}, + Journal = {Cardiovascular Research}, + Year = {2011}, + Month = feb, + Number = {2}, + Pages = {336--343}, + Volume = {89}, + DOI = {10.1093/cvr/cvq318}, + File = {Niederer2011.pdf:/home/hoermann/.zotero/zotero/krpbc0h6.default/zotero/storage/5MQG73PM/Niederer2011.pdf:application/pdf}, + ISSN = {0008-6363}, + Language = {en}, + URL = {http://cardiovascres.oxfordjournals.org/cgi/doi/10.1093/cvr/cvq318}, + URLDate = {2014-11-27} +} + +@Article{ nielles-vallespin2013mrm, + Title = {In vivo diffusion tensor MRI of the human heart: + reproducibility of breath-hold and navigator-based + approaches.}, + Author = {Nielles-Vallespin, Sonia and Mekkaoui, Choukri and + Gatehouse, Peter and Reese, Timothy G. and Keegan, Jennifer + and Ferreira, Pedro F. and Collins, Steve and Speier, Peter + and Feiweier, Thorsten and {de Silva}, Ranil and Jackowski, + Marcel P. and Pennell, Dudley J. and Sosnovik, David E. and + Firmin, David}, + Journal = {Magn Reson Med}, + Year = {2013}, + Month = {Aug}, + Number = {2}, + Pages = {454--465}, + Volume = {70}, + Abstract = {The aim of this study was to implement a quantitative in + vivo cardiac diffusion tensor imaging (DTI) technique that + was robust, reproducible, and feasible to perform in + patients with cardiovascular disease. A stimulated-echo + single-shot echo-planar imaging (EPI) sequence with zonal + excitation and parallel imaging was implemented, together + with a novel modification of the prospective navigator + (NAV) technique combined with a biofeedback mechanism. Ten + volunteers were scanned on two different days, each time + with both multiple breath-hold (MBH) and NAV multislice + protocols. Fractional anisotropy (FA), mean diffusivity + (MD), and helix angle (HA) fiber maps were created. + Comparison of initial and repeat scans showed good + reproducibility for both MBH and NAV techniques for FA (P > + 0.22), MD (P > 0.15), and HA (P > 0.28). Comparison of MBH + and NAV FA (FAMBHday1 = 0.60 ± 0.04, FANAVday1 = 0.60 ± + 0.03, P = 0.57) and MD (MDMBHday1 = 0.8 ± 0.2 × 10(-3) + mm(2) /s, MDNAVday1 = 0.9 ± 0.2 × 10( -3) mm(2) /s, P = + 0.07) values showed no significant differences, while HA + values (HAMBHday1Endo = 22 ± 10°, HAMBHday1Mid-Endo = 20 + ± 6°, HAMBHday1Mid-Epi = -1 ± 6°, HAMBHday1Epi = -17 ± + 6°, HANAVday1Endo = 7 ± 7°, HANAVday1Mid-Endo = 13 ± + 8°, HANAVday1Mid-Epi = -2 ± 7°, HANAVday1Epi = -14 ± + 6°) were significantly different. The scan duration was + 20\% longer with the NAV approach. Currently, the MBH + approach is the more robust in normal volunteers. While the + NAV technique still requires resolution of some bulk motion + sensitivity issues, these preliminary experiments show its + potential for in vivo clinical cardiac diffusion tensor + imaging and for delivering high-resolution in vivo 3D DTI + tractography of the heart.}, + DOI = {10.1002/mrm.24488}, + Institution = {Cardiovascular MR Unit, Royal Brompton And Harefield NHS + Foundation Trust, London, UK. + s.nielles-vallespin@rbht.nhs.uk}, + Keywords = {Biofeedback, Psychology, methods; Breath Holding; + Cardiac-Gated Imaging Techniques, methods; Diffusion Tensor + Imaging, methods; Feasibility Studies; Humans; Image + Enhancement, methods; Image Interpretation, + Computer-Assisted, methods; Reproducibility of Results; + Sensitivity and Specificity; Ventricular Dysfunction, Left, + pathology}, + Language = {eng}, + medline-pst = {ppublish}, + owner = {stoeckc}, + pmid = {23001828}, + timestamp = {2015.07.24}, + URL = {http://dx.doi.org/10.1002/mrm.24488} +} + +@Article{ nielles2013, + Title = {{In vivo diffusion tensor MRI of the human heart: + Reproducibility of breath-hold and navigator-based + approaches}}, + Author = {Nielles-Vallespin, S. and Mekkaoui, C. and Gatehouse, P. + and Reese, T. G. and Keegan, J. and Ferreira, P. F. and + Collins, S. and Speier, P. and Feiweier, T. and Silva, R. + and Jackowski, M. P. and Pennell, D. J. and Sosnovik, D. E. + and Firmin, D.}, + Journal = {Magnetic Resonance in Medicine}, + Volume = {70}, + Number = {2}, + Pages = {454--465}, + Year = {2013}, + Publisher = {Wiley Online Library} +} + +@Article{ nitsche-71, + Author = {Nitsche, J.}, + Journal = {Abh. Math. Sem. Univ. Hamburg}, + Pages = {9--15}, + Title = {\"{U}ber ein {V}ariationsprinzip zur {L}\"osung von + {D}irichlet-{P}roblemen bei {V}erwendung von + {T}eilr\"aumen, die keinen {R}andbedingungen unterworfen + sind}, + Volume = {36}, + Year = {1971} +} + +###Article{ nitsche-71, + Author = {Nitsche, J.}, + Title = {\"Uber ein {V}ariationsprinzip zur {L}\"osung von + {D}irichlet-{P}roblemen bei {V}erwendung von + {T}eilr\"aumen, die keinen {R}andbedingungen unterworfen + sind}, + Journal = {Abh. Math. Sem. Univ. Hamburg}, + Volume = {36}, + Year = {1971}, + Pages = {9--15} +} + +###Article{ nitsche-71, + Author = {Nitsche, J.}, + Journal = {Abh. Math. Sem. Univ. Hamburg}, + Pages = {9--15}, + Title = {\"{U}ber ein {V}ariationsprinzip zur {L}\"osung von + {D}irichlet-{P}roblemen bei {V}erwendung von + {T}eilr\"aumen, die keinen {R}andbedingungen unterworfen + sind}, + Volume = {36}, + Year = {1971} +} + +###Article{ nitsche-71, + Author = {Nitsche, J.}, + Title = {\"Uber ein {V}ariationsprinzip zur {L}\"osung von + {D}irichlet-{P}roblemen bei {V}erwendung von + {T}eilr\"aumen, die keinen {R}andbedingungen unterworfen + sind}, + Journal = {Abh. Math. Sem. Univ. Hamburg}, + Volume = {36}, + Year = {1971}, + Pages = {9--15} +} + +@Article{ nkonga-guillard-94, + Author = {Nkonga, B. and Guillard, H.}, + fjournal = {Computer Methods in Applied Mechanics and Engineering}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Number = {1-2}, + Pages = {183--204}, + Title = {Godunov type method on nonstructured meshes for + three-dimensional moving boundary problems}, + Volume = {113}, + Year = {1994} +} + +###Article{ nkonga-guillard-94, + Author = {Nkonga, B. and Guillard, H.}, + fjournal = {Computer Methods in Applied Mechanics and Engineering}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Number = {1-2}, + Pages = {183--204}, + Title = {Godunov type method on nonstructured meshes for + three-dimensional moving boundary problems}, + Volume = {113}, + Year = {1994} +} + +@PhdThesis{ nobile-01, + Author = {Nobile, F.}, + School = {EPFL, Switzerland}, + Title = {Numerical approximation of fluid-structure interaction + problems with application to haemodynamics}, + Year = {2001} +} + +###PhdThesis{ nobile-01, + Author = {Nobile, F.}, + School = {EPFL, Switzerland}, + Title = {Numerical approximation of fluid-structure interaction + problems with application to haemodynamics}, + Year = {2001} +} + +@Article{ nobile2011, + Author = {Nobile, F. and Quarteroni, A. and Ruiz-Baier, R.}, + Title = {An active strain electromechanical model for cardiac + tissue}, + Journal = {International Journal for Numerical Methods in Biomedical + Engineering}, + Volume = {28}, + Number = {1}, + Publisher = {John Wiley & Sons, Ltd}, + ISSN = {2040-7947}, + DOI = {10.1002/cnm.1468}, + Pages = {52--71}, + Keywords = {cardiac electromechanical coupling, bidomain equations, + reaction–diffusion problem, active strain, nonlinear + elasticity, finite elements}, + Year = {2012} +} + +@Article{ nolte2013mbec, + Title = {Myocardial perfusion distribution and coronary arterial + pressure and flow signals: clinical relevance in relation + to multiscale modeling, a review}, + Author = {Nolte, Froukje and Hyde, Eoin R. and Rolandi, Cristina and + Lee, Jack and van Horssen, Pepijn and Asrress, Kal and van + den Wijngaard, Jeroen P. H. M. and Cookson, Andrew N. and + van de Hoef, Tim and Chabiniok, Radomir and et al.}, + Journal = {Medical and Biological Engineering and Computing}, + Year = {2013}, + Number = {11}, + Pages = {1271--1286}, + Volume = {51}, + DOI = {10.1007/s11517-013-1088-8}, + File = {:Nolte2013MBEC.pdf:PDF}, + ISSN = {1741-0444}, + Keywords = {Perfusion}, + Publisher = {Springer Science + Business Media}, + URL = {http://dx.doi.org/10.1007/s11517-013-1088-8} +} + +@Unpublished{ nolte2020cib, + Title = {{Validation of 4D-flow-based pressure difference + estimators}}, + Author = {Nolte, David and Urbina, Jes{\'u}s and Sotelo, Julio and + Sok, Leo and Montalba, Cristian and Valverde, Israel and + Osses, Axel and Uribe, Sergio and Bertoglio, Cristobal}, + URL = {https://hal.archives-ouvertes.fr/hal-02113750}, + Note = {working paper or preprint}, + Year = {2021}, + Keywords = {validation ; 4D flow ; pressure difference ; catheter ; + PPE ; STE}, + PDF = {https://hal.archives-ouvertes.fr/hal-02113750/file/preprint.pdf}, + hal_id = {hal-02113750}, + hal_version = {v1} +} + +@Article{ nolte_reducing_2019, + langid = {english}, + Title = {Reducing the Impact of Geometric Errors in Flow + Computations Using Velocity Measurements}, + ISSN = {2040-7939, 2040-7947}, + URL = {https://onlinelibrary.wiley.com/doi/abs/10.1002/cnm.3203}, + DOI = {10.1002/cnm.3203}, + JournalTitle = {International Journal for Numerical Methods in Biomedical + Engineering}, + URLDate = {2019-08-10}, + Date = {2019}, + Pages = {e3203}, + Author = {Nolte, David and Bertoglio, Cristobal} +} + +@Article{ nolte_validation_2020, + Title = {Validation of {{4D}}-Flow-Based Pressure Map Estimators}, + Author = {Nolte, David and Urbina, Jes{\'u}s and Sotelo, Julio and + Montalba, Cristian and Sok, Leo and Osses, Axel and + Bertoglio, Crist{\'o}bal and Uribe, Sergio}, + Year = {2020}, + Journal = {JRMI}, + Number = {submitted} +} + +@Article{ nouri-poupaud-95, + Author = {Nouri, A. and Poupaud, F.}, + Journal = {J. Diff. Eq.}, + Number = {1}, + Pages = {71-88}, + Title = {An existence theorem for the multifluid {Navier-Stokes} + problem}, + Volume = {122}, + Year = {1995} +} + +###Article{ nouri-poupaud-95, + Author = {Nouri, A. and Poupaud, F.}, + Journal = {J. Diff. Eq.}, + Number = {1}, + Pages = {71-88}, + Title = {An existence theorem for the multifluid {Navier-Stokes} + problem}, + Volume = {122}, + Year = {1995} +} + +@Article{ nucifora2007radiology, + Title = {Diffusion-Tensor {MR} and Imaging and Tractography: + Exploring and Brain and Microstructure and Connectivity}, + Author = {Nucifora, Paolo and Verma, Ragini and Lee, Seung-Koo and + Melhem, Elias}, + Journal = {Radiology}, + Year = {2007}, + Number = {2}, + Volume = {245}, + File = {:Nucifora2007Radiology.pdf:PDF}, + review = {Note: This copy is for your personal non-commercial use + only. To order presentation-ready copies for distribution + to your colleagues or clients, contact us at + www.rsna.org/rsnarights. + + Diffusion-Tensor {MR} Imaging and Tractography: Exploring + Brain Microstructure and Connectivity1 + + Paolo G. P. Nucifora, MD, PhD Ragini Verma, PhD Diffusion + magnetic resonance (MR) imaging is evolving + + into a potent tool in the examination of the central + nervous Seung-Koo Lee, MD, PhD system. Although it is often + used for the detection of acute Elias R. Melhem, MD, PhD + ischemia, evaluation of directionality in a diffusion mea- + + surement can be useful in white matter, which demon- + strates strong diffusion anisotropy. Techniques such as + diffusion-tensor imaging offer a glimpse into brain micro- + structure at a scale that is not easily accessible with + other modalities, in some cases improving the detection and + characterization of white matter abnormalities. Diffusion + MR tractography offers an overall view of brain anatomy, + including the degree of connectivity between different re- + gions of the brain. However, optimal utilization of the + wide range of data provided with directional diffusion {MR} + mea- surements requires careful attention to acquisition + and postprocessing. This article will review the principles + of diffusion contrast and anisotropy, as well as clinical + appli- cations in psychiatric, developmental, + neurodegenerative, neoplastic, demyelinating, and other + types of disease. + + RSNA, 2007 + + 1 From the Department of Radiology, Sections of Neurora- + diology (P.G.P.N., E.R.M.) and Biomedical Image Analysis + (R.V.), Hospital of the University of Pennsylvania, 3400 + Spruce St, Philadelphia, PA 19104; and Department of + Diagnostic Radiology and Research Institute of Radiologi- + cal Science, Yonsei University College of Medicine, Seoul, + Korea (S.K.L.). Received March 14, 2006; revision re- + quested May 18; revision received November 10; ac- cepted + December 18; final version accepted February 12, 2007; + final review by E.R.M. May 17. Address correspondence to + E.R.M. (e-mail: emelhem@rad .upenn.edu). + + RSNA, 2007 + + Radiology: Volume 245: Number 2?November 2007 367 + + REVIEWS AND COMMENTARY REVIEW} +} + +@Article{ ohno-shirota-98, + Annote = {mhd, existence}, + Author = {Ohno, M. and Shirota, T.}, + code = {mhd27}, + Journal = {Arch. Rational Mech. Anal}, + Pages = {259-299}, + Title = {On the initial-boundary-value problem for the linearized + equations of magnetohydrodynamics}, + Volume = {144}, + Year = {1998} +} + +###Article{ ohno-shirota-98, + Annote = {mhd, existence}, + Author = {Ohno, M. and Shirota, T.}, + code = {mhd27}, + Journal = {Arch. Rational Mech. Anal}, + Pages = {259-299}, + Title = {On the initial-boundary-value problem for the linearized + equations of magnetohydrodynamics}, + Volume = {144}, + Year = {1998} +} + +@Article{ olivetti1990circ, + Title = {Side-to-side slippage of myocytes participates in + ventricular wall remodeling acutely after myocardial + infarction in rats.}, + Author = {Olivetti, G and Capasso, J M and Sonnenblick, E H and + Anversa, P}, + Journal = {Circulation Research}, + Year = {1990}, + Number = {1}, + Pages = {23-34}, + Volume = {67}, + Abstract = {To determine whether acute left ventricular failure + associated with myocardial infarction leads to + architectural changes in the spared nonischemic portion of + the ventricular wall, large infarcts were produced in rats, + and the animals were killed 2 days after surgery. Left + ventricular end-diastolic pressure was increased, whereas + left ventricular dP/dt and systolic pressure were + decreased, indicating the presence of severe ventricular + dysfunction. Absolute infarct size, determined by measuring + the fraction of myocyte nuclei lost from the left + ventricular free wall, averaged 63%. Transverse midchamber + diameter increased by 20%, and wall thickness diminished by + 33%. The mural number of myocytes in this spared region of + the left ventricular free wall decreased by 36% and the + capillary profiles by 40%. The combination of these + functional abnormalities and structural rearrangement of + the wall resulted in a 7.8-fold increase in diastolic wall + stress. A comparable analysis of the interventricular + septum demonstrated a 24% reduction in the number of cells + across the septal thickness, whereas capillaries were + diminished by 26%. Moreover, a 7.2-fold elevation in + diastolic stress was computed in this region of the + ventricle. The augmentation in diastolic stress was + associated with a 22% and a 16% myocyte cellular + hypertrophy in the wall and septum, respectively. In + conclusion, side-to-side slippage of myocytes in the + myocardium occurs in association with ventricular + dilatation after a large myocardial infarction and + contributes to ventricular remodeling and the occurrence of + decompensated eccentric hypertrophy.}, + comments = {"Moreover, a 7.2-fold elevation in diastolic stress was + computed in this region of the ventricle."}, + DOI = {10.1161/01.RES.67.1.23}, + EPrint = {http://circres.ahajournals.org/content/67/1/23.full.pdf+html}, + File = {olivetti90.pdf:olivetti90.pdf:PDF}, + timestamp = {2015/09/14}, + URL = {http://circres.ahajournals.org/content/67/1/23.abstract} +} + +@PhdThesis{ olufsen-98, + Author = {Olufsen, M.S.}, + School = {Roskilde University}, + Title = {Modeling the Arterial System with Reference to an + Anesthesia Simulator}, + Year = {1998} +} + +###PhdThesis{ olufsen-98, + Author = {Olufsen, M.S.}, + School = {Roskilde University}, + Title = {Modeling the Arterial System with Reference to an + Anesthesia Simulator}, + Year = {1998} +} + +@Article{ omran_silent_2003, + Title = {Silent and Apparent Cerebral Embolism after Retrograde + Catheterisation of the Aortic Valve in Valvular Stenosis: A + Prospective, Randomised Study}, + Volume = {361}, + ShortTitle = {Silent and Apparent Cerebral Embolism after Retrograde + Catheterisation of the Aortic Valve in Valvular Stenosis}, + Number = {9365}, + JournalTitle = {The Lancet}, + Year = {2003}, + Pages = {1241--1246}, + Author = {Omran, Heyder and Schmidt, Harald and Hackenbroch, + Matthias and Illien, Stefan and Bernhardt, Peter and von + der Recke, Giso and Fimmers, Rolf and Flacke, Sebastian and + Layer, Günter and Pohl, Christoph}, + Options = {useprefix=true} +} + +@Article{ oparil2018hypert, + Author = {Oparil, Suzanne and Acelajado, Maria Czarina and Bakris, + George L. and Berlowitz, Dan R. and C{\'\i}fkov{\'a}, + Renata and Dominiczak, Anna F. and Grassi, Guido and + Jordan, Jens and Poulter, Neil R. and Rodgers, Anthony and + Whelton, Paul K.}, + Date = {2018/03/22/online}, + date-added = {2018-08-26 11:36:02 +0000}, + date-modified = {2018-08-26 11:36:02 +0000}, + day = {22}, + Journal = {Nature Reviews Disease Primers}, + l3 = {10.1038/nrdp.2018.14; }, + m3 = {Primer}, + Month = {03}, + Pages = {18014 EP}, + Publisher = {Macmillan Publishers Limited SN -}, + Title = {Hypertension}, + ty = {JOUR}, + URL = {http://dx.doi.org/10.1038/nrdp.2018.14}, + Volume = {4}, + Year = {2018}, + bdsk-url-1 = {http://dx.doi.org/10.1038/nrdp.2018.14} +} + +@InCollection{ orbanz2011bayesian, + Title = {Bayesian nonparametric models}, + Author = {Orbanz, Peter and Teh, Yee Whye}, + BookTitle = {Encyclopedia of Machine Learning}, + Pages = {81--89}, + Year = {2011}, + Publisher = {Springer} +} + +@Article{ orn2007ajc, + Title = {Effect of left ventricular scar size, location, and + transmurality on left ventricular remodeling with healed + myocardial infarction.}, + Author = {Orn, Stein and Manhenke, Cord and Anand, Inder S. and + Squire, Iain and Nagel, Eike and Edvardsen, Thor and + Dickstein, Kenneth}, + Journal = {Am J Cardiol}, + Year = {2007}, + Month = {Apr}, + Number = {8}, + Pages = {1109--1114}, + Volume = {99}, + Abstract = {Studies of patients with acute myocardial infarction (MI) + suggest that anterior transmural infarcts are associated + with greater left ventricular (LV) remodeling compared with + nontransmural nonanterior infarctions. It is unclear + whether this relation also exists in long-term survivors of + MI. Cardiac magnetic resonance imaging was used to explore + the relation between myocardial scar size, localization, + transmurality, and degree of long-term LV remodeling in + patients with healed MI. Subjects were recruited from a + registry of patients with healed MI who participated in the + OPTIMAAL trial. Cardiac magnetic resonance imaging was + performed to assess LV mass, volumes, LV ejection fraction, + and myocardial scarring, adjusting for myocardial ischemia. + Fifty-seven patients (mean age 69 +/- 10 years mean + ejection fraction 49 +/- 13\%) were studied 4.4 +/- 0.4 + years after MI. Anterior scar was found in 19 patients and + nonanterior scar in 33, whereas 5 patients did not show + myocardial scar. Transmural scar was evident in 36 + patients. In the 52 patients with scar, average total scar + size was 13 +/- 8\% of total LV mass. There was a strong + linear relation between scar size and LV end-diastolic + volume index (r = 0.81, p <0.0001), end-systolic volume + index (r = 0.86, p <0.0001), and LV ejection fraction (r = + -0.74, p <0.0001). In multivariate analysis, scar size was + the strongest independent predictor of ejection fraction + and LV volumes independently of scar localization and + transmurality. In conclusion, in the studied cohort, there + was a linear relation between scar size and ejection + fraction and LV volumes. This relation was independent of + scar location and transmurality.}, + DOI = {10.1016/j.amjcard.2006.11.059}, + Institution = {University of Bergen, Stavanger University Hospital, + Stavanger, Norway. drsteinorn@hotmail.com}, + Keywords = {Aged; Cardiac Volume, physiology; Cicatrix, + pathology/physiopathology; Cohort Studies; Contrast Media; + Female; Follow-Up Studies; Gadolinium DTPA, diagnostic use; + Heart Ventricles, pathology; Humans; Image Enhancement; + Longitudinal Studies; Magnetic Resonance Imaging; Male; + Middle Aged; Myocardial Infarction, + pathology/physiopathology; Myocardial Ischemia, + pathology/physiopathology; Myocardium, pathology; + Registries; Stroke Volume, physiology; Ventricular + Remodeling, physiology; Wound Healing, physiology}, + Language = {eng}, + medline-pst = {ppublish}, + owner = {stoeckc}, + pii = {S0002-9149(07)00067-7}, + pmid = {17437737}, + timestamp = {2015.07.24}, + URL = {http://dx.doi.org/10.1016/j.amjcard.2006.11.059} +} + +@Article{ oshinski1996improved, + Title = {Improved measurement of pressure gradients in aortic + coarctation by magnetic resonance imaging}, + Author = {Oshinski, John N and Parks, W James and Markou, Christos P + and Bergman, Harris L and Larson, Blake E and Ku, David N + and Mukundan, Srinivasan and Pettigrew, Roderic I}, + Journal = {J. American College of Cardiology}, + Volume = {28}, + Number = {7}, + Pages = {1818--1826}, + Year = {1996}, + Publisher = {Am Coll Cardio Found} +} + +@Article{ osirix, + Author = {Rosset, A. and Spadola, L. and Ratib, O.}, + affiliation = {Department of Radiology University of California Los + Angeles Los Angeles California}, + Title = {OsiriX: An Open-Source Software for Navigating in + Multidimensional DICOM Images}, + Journal = {Journal of Digital Imaging}, + Publisher = {Springer New York}, + ISSN = {0897-1889}, + keyword = {Medicine}, + Pages = {205-216}, + Volume = {17}, + Issue = {3}, + Note = {10.1007/s10278-004-1014-6}, + Year = {2004} +} + +###Article{ osirix, + Author = {Rosset, A. and Spadola, L. and Ratib, O.}, + affiliation = {Department of Radiology University of California Los + Angeles Los Angeles California}, + Title = {OsiriX: An Open-Source Software for Navigating in + Multidimensional DICOM Images}, + Journal = {Journal of Digital Imaging}, + Publisher = {Springer New York}, + ISSN = {0897-1889}, + keyword = {Medicine}, + Pages = {205-216}, + Volume = {17}, + Issue = {3}, + URL = {http://dx.doi.org/10.1007/s10278-004-1014-6}, + Note = {10.1007/s10278-004-1014-6}, + Year = {2004} +} + +@Article{ osman1999mrm, + Title = {Cardiac Motion Tracking Using {CINE} Harmonic Phase + ({HARP}) Magnetic Resonance Imaging}, + Author = {Osman, Nael F. and Kerwin, William S. and {McVeigh}, + Elliot R. and Prince, Jerry L.}, + Journal = {Magnetic Resonance in Medicine}, + Year = {1999}, + Month = dec, + Number = {6}, + Pages = {1048--1060}, + Volume = {42}, + Abstract = {This article introduces a new image processing technique + for rapid analysis of tagged cardiac magnetic resonance + image sequences. The method uses isolated spectral peaks in + SPAMM-tagged magnetic resonance images, which contain + information about cardiac motion. The inverse Fourier + transform of a spectral peak is a complex image whose + calculated angle is called a harmonic phase (HARP) image. + It is shown how two HARP image sequences can be used to + automatically and accurately track material points through + time. A rapid, semiautomated procedure to calculate + circumferential and radial Lagrangian strain from tracked + points is described. This new computational approach + permits rapid analysis and visualization of myocardial + strain within 5-10 min after the scan is complete. Its + performance is demonstrated on MR image sequences + reflecting both normal and abnormal cardiac motion. Results + from the new method are shown to compare very well with a + previously validated tracking algorithm.}, + ISSN = {0740-3194}, + owner = {david}, + pmcid = {PMC2570035}, + pmid = {10571926}, + timestamp = {2015-05-28 17:38:39}, + URL = {http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2570035/}, + URLDate = {2015-05-28} +} + +@Article{ ott_local_2004, + Title = {A Local Ensemble {{Kalman}} Filter for Atmospheric Data + Assimilation}, + Volume = {56}, + ISSN = {null}, + URL = {https://doi.org/10.3402/tellusa.v56i5.14462}, + DOI = {10.3402/tellusa.v56i5.14462}, + Abstract = {In this paper, we introduce a new, local formulation of + the ensemble Kalman filter approach for atmospheric data + assimilation. Our scheme is based on the hypothesis that, + when the Earth’s surface is divided up into local regions + of moderate size, vectors of the forecast uncertainties in + such regions tend to lie in a subspace of much lower + dimension than that of the full atmospheric state vector of + such a region. Ensemble Kalman filters, in general, take + the analysis resulting from the data assimilation to lie in + the same subspace as the expected forecast error. Under our + hypothesis the dimension of the subspace corresponding to + local regions is low. This is used in our scheme to allow + operations only on relatively low-dimensional matrices. The + data assimilation analysis is performed locally in a manner + allowing massively parallel computation to be exploited. + The local analyses are then used to construct global states + for advancement to the next forecast time. One advantage, + which may take on more importance as ever-increasing + amounts of remotely-sensed satellite data become available, + is the favorable scaling of the computational cost of our + method with increasing data size, as compared to other + methods that assimilate data sequentially. The method, its + potential advantages, properties, and implementation + requirements are illustrated by numerical experiments on + the Lorenz-96 model. It is found that accurate analysis can + be achieved at a cost which is very modest compared to that + of a full global ensemble Kalman filter.}, + Number = {5}, + JournalTitle = {Tellus A: Dynamic Meteorology and Oceanography}, + URLDate = {2019-02-27}, + Year = {2004-01-01}, + Pages = {415-428}, + Author = {Ott, Edward and Hunt, Brian R. and Szunyogh, Istvan and + Zimin, Aleksey V. and Kostelich, Eric J. and Corazza, + Matteo and Kalnay, Eugenia and Patil, D. J. and Yorke, + James A.} +} + +@Book{ otto2009valvular, + Title = {Valvular heart disease: a companion to Braunwald’s heart + disease}, + Author = {Otto, Catherine M and Bonow, Robert O}, + Journal = {Heart Disease}, + Volume = {55}, + Pages = {86976}, + Year = {2009}, + Note = {ISBN 978-1-4160-5892-2} +} + +@Article{ otto2014reviewas, + Title = {Aortic-valve stenosis from patients at risk to severe + valve obstruction}, + Author = {Otto, C. and Prendergast, B.}, + Journal = {New England Journal of Medicine}, + Volume = {371}, + Number = {8}, + Pages = {744--756}, + Year = {2014}, + Publisher = {Mass Medical Soc} +} + +@Article{ oubel2012reconstruction, + Author = {Estanislao Oubel and M\8Eriam Koob and Colin Studholme and + Jean-Louis Dietemann and Fran\8Dois Rousseau}, + Title = {Reconstruction of scattered data in fetal diffusion {MRI} + }, + Journal = {Medical Image Analysis }, + Year = {2012}, + Volume = {16}, + Pages = {28 - 37}, + Number = {1}, + ISSN = {1361-8415} +} + +@Article{ pant2014ijnmbe, + Author = {Pant, S. and FabrÚges, B. and Gerbeau, J-F. and + Vignon-Clementel, I. E.}, + Title = {A methodological paradigm for patient-specific multi-scale + CFD simulations: from clinical measurements to parameter + estimates for individual analysis}, + Journal = {International Journal for Numerical Methods in Biomedical + Engineering}, + Volume = {30}, + Number = {12}, + ISSN = {2040-7947}, + URL = {http://dx.doi.org/10.1002/cnm.2692}, + DOI = {10.1002/cnm.2692}, + Pages = {1614--1648}, + Keywords = {parameter estimation, unscented Kalman filter, + patient-specific simulations, multi-scale modelling, lumped + parameter models, computational fluid dynamics}, + Year = {2014} +} + +###Article{ pant2014ijnmbe, + Author = {Pant, S. and Fabr\`eges, B. and Gerbeau, J-F. and + Vignon-Clementel, I. E.}, + Title = {A methodological paradigm for patient-specific multi-scale + CFD simulations: from clinical measurements to parameter + estimates for individual analysis}, + Journal = {International Journal for Numerical Methods in Biomedical + Engineering}, + Volume = {30}, + Number = {12}, + ISSN = {2040-7947}, + DOI = {10.1002/cnm.2692}, + Pages = {1614--1648}, + Keywords = {parameter estimation, unscented Kalman filter, + patient-specific simulations, multi-scale modelling, lumped + parameter models, computational fluid dynamics}, + Year = {2014} +} + +@Article{ pant_methodological_2014, + langid = {english}, + Title = {A Methodological Paradigm for Patient-Specific Multi-Scale + {{CFD}} Simulations: From Clinical Measurements to + Parameter Estimates for Individual Analysis}, + Volume = {30}, + ISSN = {20407939}, + URL = {http://doi.wiley.com/10.1002/cnm.2692}, + DOI = {10.1002/cnm.2692}, + ShortTitle = {A Methodological Paradigm for Patient-Specific Multi-Scale + {{CFD}} Simulations}, + Abstract = {A new framework for estimation of lumped (for instance, + Windkessel) model parameters from uncertain clinical + measurements is presented. The ultimate aim is to perform + patient-specific haemodynamic analysis. This framework is + based on sensitivity analysis tools and the sequential + estimation approach of the unscented Kalman filter. + Sensitivity analysis and parameter estimation are performed + in lumped parameter models, which act as reduced order + surrogates of the 3D domain for haemodynamic analysis. + While the goal of sensitivity analysis is to assess + potential identifiability problems, the unscented Kalman + filter estimation leads to parameter estimates based on + clinical measurements and modelling assumptions. An + application of such analysis and parameter estimation + methodology is demonstrated for synthetic and real data. + Equality constraints on various physiological parameters + are enforced. Since the accuracy of the Windkessel + parameter estimates depends on the lumped parameter + representativeness, the latter is iteratively improved by + running few 3D simulations while simultaneously improving + the former. Such a method is applied on a patientspecific + aortic coarctation case. Less than 3\% and 9\% errors + between the clinically measured quantities and 3D + simulation results for rest and stress are obtained, + respectively. Knowledge on how these Windkessel parameters + change from rest to stress can thus be learned by such an + approach. Lastly, it is demonstrated that the proposed + approach is capable of dealing with a wide variety of + measurements and cases where the pressure and flow + clinical measurements are not taken simultaneously. + Copyright © 2014 John Wiley \& Sons, Ltd.}, + Number = {12}, + JournalTitle = {International Journal for Numerical Methods in Biomedical + Engineering}, + URLDate = {2019-01-29}, + Year = {2014-12}, + Pages = {1614-1648}, + Author = {Pant, S. and Fabrèges, B. and Gerbeau, J-F. and + Vignon-Clementel, I. E.} +} + +@InCollection{ park-felippa-deruntz-77, + Author = {Park, K.C. and Felippa, C.A. and Deruntz, J.A.}, + BookTitle = {Computational Methods for Fluid-Structure Interaction + Problems}, + Editor = {Belytschko. T. and Geers, T.L.}, + Pages = {95---124}, + Publisher = {American Society of Mechanical Engineers}, + Title = {Stabilization of staggered solution procedures for + fluid-structure interaction analysis}, + Volume = {26}, + Year = {1977} +} + +###InCollection{ park-felippa-deruntz-77, + Author = {Park, K.C. and Felippa, C.A. and Deruntz, J.A.}, + BookTitle = {Computational Methods for Fluid-Structure Interaction + Problems}, + Editor = {Belytschko. T. and Geers, T.L.}, + Pages = {95---124}, + Publisher = {American Society of Mechanical Engineers}, + Title = {Stabilization of staggered solution procedures for + fluid-structure interaction analysis}, + Volume = {26}, + Year = {1977} +} + +@Article{ path-chf, + Author = {Auricchio, A. and Stellbrink, C and Sack, S. and et al.}, + Journal = {J. Am. Coll. Cariol.}, + Pages = {1895-1898}, + Title = {Long-term clinical effect of hemodynamically optimized + cardiac resynchronization therapy in patients with heart + failure and ventricular conduction delay}, + Volume = {39}, + Year = {2002} +} + +###Article{ path-chf, + Author = {Auricchio, A. and Stellbrink, C and Sack, S. and et al.}, + Journal = {J. Am. Coll. Cariol.}, + Pages = {1895-1898}, + Title = {Long-term clinical effect of hemodynamically optimized + cardiac resynchronization therapy in patients with heart + failure and ventricular conduction delay}, + Volume = {39}, + Year = {2002} +} + +@Article{ patnaik-guirguis-boris-oran-87, + Author = {Patnaik, G. and Guirguis, R.H. and Boris, J.P. and Oran, + E.S.}, + Journal = {J. of Comput. Phys.}, + Pages = {1-20}, + Title = {A barely implicit correction for the flux-corrected + transport}, + Volume = {71}, + Year = {1987} +} + +###Article{ patnaik-guirguis-boris-oran-87, + Author = {Patnaik, G. and Guirguis, R.H. and Boris, J.P. and Oran, + E.S.}, + Journal = {J. of Comput. Phys.}, + Pages = {1-20}, + Title = {A barely implicit correction for the flux-corrected + transport}, + Volume = {71}, + Year = {1987} +} + +@InProceedings{ peiro-shah-doorly-sherwin-caro-98, + Address = {London, U.K.}, + Author = {Peir{\'o}, J. and Shah, O. and Doorly, D.J. and Sherwin, + S.J. and Caro, C.G.}, + BookTitle = {6th International Conference on Numerical Grid Generation + in Computational Field Simulations}, + Editor = {M. Cross and P. Eiseman and J. Ha{\"u}ser and B. K. Soni + and J. F. Thompson}, + Month = {July 6-9}, + Organization = {University of Greenwich}, + Pages = {457-466}, + Publisher = {International Society for Grid Generation}, + Title = {Unstructured Viscous Mesh Generation for Haemodynamic Flow + Simulation Using High-Order Spectral Elements}, + Year = {1998} +} + +###InProceedings{ peiro-shah-doorly-sherwin-caro-98, + Address = {London, U.K.}, + Author = {Peir{\'o}, J. and Shah, O. and Doorly, D.J. and Sherwin, + S.J. and Caro, C.G.}, + BookTitle = {6th International Conference on Numerical Grid Generation + in Computational Field Simulations}, + Editor = {M. Cross and P. Eiseman and J. Ha{\"u}ser and B. K. Soni + and J. F. Thompson}, + Month = {July 6-9}, + Organization = {University of Greenwich}, + Pages = {457-466}, + Publisher = {International Society for Grid Generation}, + Title = {Unstructured Viscous Mesh Generation for Haemodynamic Flow + Simulation Using High-Order Spectral Elements}, + Year = {1998} +} + +@InCollection{ peiro_reduced_2009, + langid = {english}, + Location = {{Milano}}, + Title = {Reduced Models of the Cardiovascular System}, + ISBN = {978-88-470-1152-6}, + URL = {https://doi.org/10.1007/978-88-470-1152-6_10}, + Abstract = {Due to the large number of vessels involved and the + multitude of different length scales required to accurately + represent the flow in the various regions of the + cardiovascular system, simulations of the flow of blood in + the system based on full 3D models (see Chapters 2 and 3) + are beyond the capability of current computers and they + will be for years to come. Moreover, the huge amount of + data that would be generated by such simulations is costly + to process and of difficult clinical interpretation.}, + BookTitle = {Cardiovascular {{Mathematics}}: {{Modeling}} and + Simulation of the Circulatory System}, + Series = {{{MS}}\&{{A}}}, + Publisher = {{Springer Milan}}, + URLDate = {2019-02-18}, + Year = {2009}, + Pages = {347-394}, + Author = {Peir{\'o}, Joaquim and Veneziani, Alessandro}, + Editor = {Formaggia, Luca and Quarteroni, Alfio and Veneziani, + Alessandro}, + DOI = {10.1007/978-88-470-1152-6_10} +} + +@Article{ pellikka2005outcomenonsimpas, + Title = {Outcome of 622 adults with asymptomatic, hemodynamically + significant aortic stenosis during prolonged follow-up}, + Author = {Pellikka, Patricia A and Sarano, Maurice E and Nishimura, + Rick A and Malouf, Joseph F and Bailey, Kent R and Scott, + Christopher G and Barnes, Marion E and Tajik, A Jamil}, + Journal = {Circulation}, + Volume = {111}, + Number = {24}, + Pages = {3290--3295}, + Year = {2005}, + Publisher = {Am Heart Assoc} +} + +@Article{ pennell2010, + Author = {Pennell, D.}, + Title = {Cardiovascular Magnetic Resonance}, + Volume = {121}, + Number = {5}, + Pages = {692--705}, + Year = {2010}, + DOI = {10.1161/CIRCULATIONAHA.108.811547}, + Publisher = {American Heart Association, Inc.}, + ISSN = {0009-7322}, + URL = {http://circ.ahajournals.org/content/121/5/692}, + EPrint = {http://circ.ahajournals.org/content/121/5/692.full.pdf}, + Journal = {Circulation} +} + +@Article{ perego-veneziani-vergara-11, + Author = {Perego, M. and Veneziani, A. and Vergara, C.}, + Journal = {SIAM J. Sc. Comp.}, + Number = {3}, + Pages = {1181-1211}, + Title = {{A variational approach for estimating the compliance of + the cardiovascular tissue: An inverse fluid-structure + interaction problem}}, + Volume = {33}, + Year = 2011 +} + +###Article{ perego-veneziani-vergara-11, + Author = {Perego, M. and Veneziani, A. and Vergara, C.}, + Journal = {SIAM J. Sc. Comp.}, + Number = {3}, + Pages = {1181-1211}, + Title = {{A variational approach for estimating the compliance of + the cardiovascular tissue: An inverse fluid-structure + interaction problem}}, + Volume = {33}, + Year = 2011 +} + +@Article{ perego_variational_2011, + Title = {A Variational Approach for Estimating the Compliance of + the Cardiovascular Tissue: {{An}} Inverse Fluid-Structure + Interaction Problem}, + Volume = {33}, + ShortTitle = {A Variational Approach for Estimating the Compliance of + the Cardiovascular Tissue}, + Number = {3}, + JournalTitle = {SIAM Journal on Scientific Computing}, + Year = {2011}, + Pages = {1181--1211}, + Author = {Perego, Mauro and Veneziani, Alessandro and Vergara, + Christian} +} + +@InProceedings{ peric-dettmer-05, + Author = {Peri{\'c}, D. and Dettmer, W. G.}, + BookTitle = {5th international Conference on Computational of Shell \& + Spatial Structures}, + Organization = {IASS-IACM}, + Title = {A computational strategy for interaction of fluid flow + with spatial structures}, + Year = {2005} +} + +###InProceedings{ peric-dettmer-05, + Author = {Peri{\'c}, D. and Dettmer, W. G.}, + BookTitle = {5th international Conference on Computational of Shell \& + Spatial Structures}, + Organization = {IASS-IACM}, + Title = {A computational strategy for interaction of fluid flow + with spatial structures}, + Year = {2005} +} + +@InProceedings{ perktold-rappitsch-94, + Author = {Perktold, K. and Rappitsch, G.}, + BookTitle = {Computational Methods for Fluid-Structure interaction}, + code = {fsi12}, + Editor = {Crolet, J. and Ohayon, R.}, + Publisher = {Pitman}, + Title = {Mathematical modeling of local arterial flow and vessel + mechanics}, + Year = {1994} +} + +###InProceedings{ perktold-rappitsch-94, + Author = {Perktold, K. and Rappitsch, G.}, + BookTitle = {Computational Methods for Fluid-Structure interaction}, + code = {fsi12}, + Editor = {Crolet, J. and Ohayon, R.}, + Publisher = {Pitman}, + Title = {Mathematical modeling of local arterial flow and vessel + mechanics}, + Year = {1994} +} + +@Article{ perktold-rappitsch-95, + Author = {Perktold, K. and Rappitsch, G.}, + Journal = {J. of Biomech.}, + Pages = {845--856}, + Title = {Computer simulation of Local Blood Flow and Vessel + Mechanics in a Compliant Carotid Artery Bifurcation Model}, + Volume = {28}, + Year = {1995} +} + +###Article{ perktold-rappitsch-95, + Author = {Perktold, K. and Rappitsch, G.}, + Journal = {J. of Biomech.}, + Pages = {845--856}, + Title = {Computer simulation of Local Blood Flow and Vessel + Mechanics in a Compliant Carotid Artery Bifurcation Model}, + Volume = {28}, + Year = {1995} +} + +@Book{ perthame, + Author = {Perthame, B.}, + Note = {to appear}, + Publisher = {Oxford Univ. Press.}, + Title = {Kinetic formulation of conservation laws} +} + +###Book{ perthame, + Author = {Perthame, B.}, + Note = {to appear}, + Publisher = {Oxford Univ. Press.}, + Title = {Kinetic formulation of conservation laws} +} + +@Article{ petersen2006r, + Title = {Myocardial tissue phase mapping with cine phase-contrast + mr imaging: regional wall motion analysis in healthy + volunteers.}, + Author = {Petersen, Steffen E. and Jung, Bernd A. and Wiesmann, + Frank and Selvanayagam, Joseph B. and Francis, Jane M. and + Hennig, Juergen and Neubauer, Stefan and Robson, Matthew + D.}, + Journal = {Radiology}, + Year = {2006}, + Month = {Mar}, + Number = {3}, + Pages = {816--826}, + Volume = {238}, + Abstract = {To establish prospectively a database of normal + three-dimensional systolic and diastolic endocardial and + epicardial velocity values for all myocardial segments in + healthy volunteers by using cine phase-contrast velocity + magnetic resonance imaging, also called tissue phase + mapping (TPM).The study was approved by the institutional + ethics committee and was conducted according to principles + of the Declaration of Helsinki; each subject provided + informed written consent. Ninety-six healthy volunteers (57 + [59\%] men, 39 [41\%] women; mean age, 38 years +/- 12 + [standard deviation]) underwent cardiac phase-contrast + imaging with a black blood segmented k-space gradient-echo + sequence for the analysis of three-dimensional myocardial + velocity with high spatial resolution at 1.5 T on basal, + midventricular, and apical short-axis views. Eighteen + consecutive volunteers were imaged twice to determine + interstudy reproducibility, and intra- and interobserver + variability values were analyzed. Systolic and diastolic + velocity curves were analyzed for peak velocity and time to + peak velocity in the radial, circumferential, and + longitudinal directions, as well as for torsion rate and + longitudinal strain rate. Mixed-effects models with a + random intercept for volunteers were used to test + differences among the three ventricular sections and the + transmural, endocardial, and epicardial parameters.TPM + enabled reproducible assessment of myocardial velocity with + small intra- and interobserver variability values. Systolic + peak radial velocity was lowest at the apical level (P < + .001); diastolic peak radial velocity was similar at all + three myocardial levels (P = .73). As viewed from the apex, + a relative counterclockwise rotation during systole was + followed by a relative clockwise rotation of the apex + against the base. Diastolic and systolic peak longitudinal + velocity values decreased from base to apex (P < .001). A + gradient between endocardium and epicardium was observed + for radial velocity values, with greater endocardial + velocity values (P < .001).TPM is a reproducible + comprehensive modality for assessment of regional wall + motion, and intra- and interobserver variability values are + low.}, + DOI = {10.1148/radiol.2383041992}, + Institution = {University of Oxford Centre for Clinical Magnetic + Resonance Research, Department of Cardiovascular Medicine, + John Radcliffe Hospital, England. + steffen.petersen@cardiov.ox.ac.uk}, + Keywords = {Adult; Diastole, physiology; Female; Humans; Imaging, + Three-Dimensional; Magnetic Resonance Imaging, Cine; Male; + Myocardial Contraction, physiology; Observer Variation; + Prospective Studies; Reference Values; Reproducibility of + Results; Systole, physiology}, + Language = {eng}, + medline-pst = {ppublish}, + owner = {stoeckc}, + pii = {2383041992}, + pmid = {16424246}, + timestamp = {2015.07.24}, + URL = {http://dx.doi.org/10.1148/radiol.2383041992} +} + +@Article{ peterson-88, + Annote = {mhd, existence, finite element}, + Author = {Peterson, J. S.}, + code = {mhd9}, + Journal = {Num. Meth. Partial Diff. Eq.}, + Pages = {57-68}, + Title = {On the finite element approximation of incompressible + flows of an electrically conducting fluid}, + Volume = {4}, + Year = {1988} +} + +###Article{ peterson-88, + Annote = {mhd, existence, finite element}, + Author = {Peterson, J. S.}, + code = {mhd9}, + Journal = {Num. Meth. Partial Diff. Eq.}, + Pages = {57-68}, + Title = {On the finite element approximation of incompressible + flows of an electrically conducting fluid}, + Volume = {4}, + Year = {1988} +} + +@Misc{ petsc-web-page, + Author = {Satish Balay and Shrirang Abhyankar and Mark~F. Adams and + Jed Brown and Peter Brune and Kris Buschelman and Lisandro + Dalcin and Victor Eijkhout and William~D. Gropp and Dinesh + Kaushik and Matthew~G. Knepley and Lois Curfman McInnes and + Karl Rupp and Barry~F. Smith and Stefano Zampini and Hong + Zhang and Hong Zhang}, + Title = {{PETS}c {W}eb page}, + URL = {http://www.mcs.anl.gov/petsc}, + HowPublished = {\url{http://www.mcs.anl.gov/petsc}}, + Year = {2016} +} + +@Article{ pfaller2018ipod, + Title = {Parametric model order reduction using POD for coupled + nonlinear cardiac mechanics}, + Author = {Pfaller, Martin R and Lang, Johannes and Varona, Maria + Cruz and Biehler, Jonas and Bertoglio, Crist{\'o}bal and + Wall, Wolfgang A}, + Note = {In proceedings of the 6th European Conference on + Computational Mechanics (ECCM 6)}, + Year = {2018} +} + +@Article{ pfeffer90circ, + Title = {Ventricular remodeling after myocardial infarction. + Experimental observations and clinical implications.}, + Author = {Pfeffer, M A and Braunwald, E}, + Journal = {Circulation}, + Year = {1990}, + Number = {4}, + Pages = {1161-72}, + Volume = {81}, + Abstract = {An acute myocardial infarction, particularly one that is + large and transmural, can produce alterations in the + topography of both the infarcted and noninfarcted regions + of the ventricle. This remodeling can importantly affect + the function of the ventricle and the prognosis for + survival. In the early period, infarct expansion has been + recognized by echocardiography as a lengthening of the + noncontractile region. The noninfarcted region also + undergoes an important lengthening that is consistent with + a secondary volume-overload hypertrophy and that can be + progressive. The extent of ventricular enlargement after + infarction is related to the magnitude of the initial + damage to the myocardium and, although an increase in + cavity size tends to restore stroke volume despite a + persistently depressed ejection fraction, ventricular + dilation has been associated with a reduction in survival. + The process of ventricular enlargement can be influenced by + three interdependent factors, that is, infarct size, + infarct healing, and ventricular wall stresses. A most + effective way to prevent or minimize the increase in + ventricular size after infarction and the consequent + adverse effect on prognosis is to limit the initial insult. + Acute reperfusion therapy has been consistently shown to + result in a reduction in ventricular volume. The + reestablishment of blood flow to the infarcted region, even + beyond the time frame for myocyte salvage, has beneficial + effects in attenuating ventricular enlargement. The process + of scarification can be interfered with during the acute + infarct period by the administration of + glucocorticosteroids and nonsteroidal antiinflammatory + agents, which result in thinner infarcts and greater + degrees of infarct expansion. Modification of distending or + deforming forces can importantly influence ventricular + enlargement. Even short-term augmentations in afterload + have deleterious long-term effects on ventricular + topography. Conversely, judicious use of nitroglycerin + seems to be associated with an attenuation of infarct + expansion and long-term improvement in clinical outcome. + Long-term therapy with an angiotensin converting enzyme + inhibitor can favorably alter the loading conditions on the + left ventricle and reduce progressive ventricular + enlargement as demonstrated in both experimental and + clinical studies. With the former therapy, this attenuation + of ventricular enlargement was associated with a + prolongation in survival. The long-term clinical + consequences of long-term angiotensin converting enzyme + inhibitor therapy after myocardial infarction is currently + being evaluated. Although studies directed at attenuating + left ventricular remodeling after infarction are in the + early stages, it does seem that this will be an important + area in which future research might improve long-term + outcome after infarction.}, + DOI = {10.1161/01.CIR.81.4.1161}, + EPrint = {http://circ.ahajournals.org/content/81/4/1161.full.pdf+html}, + File = {pfeffer90.pdf:pfeffer90.pdf:PDF}, + timestamp = {2015/09/10}, + URL = {http://circ.ahajournals.org/content/81/4/1161.abstract} +} + +@Article{ pham-verron-gourdeau-98, + Author = {Pham, D.-T. and Verron, J. and Gourdeau, L.}, + date-added = {2009-03-10 11:40:28 -0700}, + date-modified = {2009-03-10 12:25:39 -0700}, + DOI = {DOI: 10.1016/S1251-8050(97)86815-2}, + ISSN = {1251-8050}, + Journal = {Comptes Rendus de l'Acad{\'e}mie des Sciences - Series IIA + }, + Number = {4}, + Pages = {255--260}, + Title = {Filtres de {K}alman singuliers {\'e}volutifs pour + l'assimilation de donn{\'e}es en oc{\'e}anographie}, + Volume = {326}, + Year = {1998} +} + +###Article{ pham-verron-gourdeau-98, + Author = {Pham, D.-T. and Verron, J. and Gourdeau, L.}, + date-added = {2009-03-10 11:40:28 -0700}, + date-modified = {2009-03-10 12:25:39 -0700}, + DOI = {DOI: 10.1016/S1251-8050(97)86815-2}, + ISSN = {1251-8050}, + Journal = {Comptes Rendus de l'Acad{\'e}mie des Sciences - Series IIA + }, + Number = {4}, + Pages = {255--260}, + Title = {Filtres de {K}alman singuliers {\'e}volutifs pour + l'assimilation de donn{\'e}es en oc{\'e}anographie}, + Volume = {326}, + Year = {1998}, + bdsk-url-1 = {http://www.sciencedirect.com/science/article/B6VJ3-3WSVDC0-5/2/19eded8bacefb96524950071ecbf484d}, + bdsk-url-2 = {http://dx.doi.org/10.1016/S1251-8050(97)86815-2} +} + +@Article{ pibarot-2000, + Author = {Garcia, D. and Pibarot, P. and Dumesnil, J. and Sakr, F. + and Durand, L.-G.}, + Journal = {Circulation}, + Pages = {765--771}, + Title = {Assessment of Aortic Valve Stenosis Severity, A new index + based on the energy loss concept}, + Volume = {101}, + Year = {2000} +} + +###Article{ pibarot-2000, + Author = {Garcia, D. and Pibarot, P. and Dumesnil, J. and Sakr, F. + and Durand, L.-G.}, + Journal = {Circulation}, + Pages = {765--771}, + Title = {Assessment of Aortic Valve Stenosis Severity, A new index + based on the energy loss concept}, + Volume = {101}, + Year = {2000} +} + +@Article{ pieske2004ehjs, + Title = {Reverse remodeling in heart failure {\textendash} fact or + fiction?}, + Author = {Pieske, Burkert}, + Journal = {European Heart Journal Supplements}, + Year = {2004}, + Number = {suppl D}, + Pages = {D66--D78}, + Volume = {6}, + Abstract = {Maladaptive remodeling is associated with impaired + prognosis in heart failure, and prevention of remodeling is + an established therapeutic target. However, it is much less + clear whether remodeling may be reversed once it has + developed. In the last decade, anti-neuroendocrine therapy + with ACE inhibitors, and even more potently, beta-blockers, + was shown to improve surrogate markers for reverse + remodeling, such as ejection fraction (EF), ventricular + volumes, and mass. For beta-blockers, reverse molecular + remodeling was also shown in biopsy specimens on the + cellular and subcellular level. Both moderate endurance + training and continuous positive airway pressure (CPAP) + therapy in heart failure patients with sleep apnea induce + reverse remodeling. Cardiac resynchronization therapy + improves exercise capacity and quality of life in patients + with ventricular dyssynchrony and is clearly associated + with geometrical and functional reverse remodeling over + time. Whether this translates into improved survival + remains to be demonstrated. Surgical approaches for reverse + remodeling, such as mitral valve replacement, + aneurysmectomy, and volume reduction (Batista procedure) + have been developed, but may also be associated with high + perioperative mortality. Mechanical unloading of the + failing ventricles by left ventricular assist systems + (LVAD) induces well-characterized reverse remodeling on the + cellular and subcellular level. However, persistent + functional improvement in a significant subset of patients + that would allow weaning form the device is still under + debate. Novel, complementary approaches, such as gene + transfer or stem cell therapy are under pre-clinical and + clinical investigation. Taken together, reverse remodeling + can be induced by pharmacological and non-pharmacological + therapy and may serve as a surrogate parameter for + therapeutic success in the individual patient. Since + maladaptive remodeling is associated with poor prognosis, + identification of novel strategies to reverse this process + remains a promising target.}, + DOI = {10.1016/j.ehjsup.2004.05.019}, + File = {pieske04.pdf:pieske04.pdf:PDF}, + ISSN = {1520-765X}, + Publisher = {The Oxford University Press}, + timestamp = {2015/09/11} +} + +@Article{ pigny-moreau-92, + Author = {Pigny, S. and Moreau, R.}, + Journal = {Eur. J. Mech., B/ Fluids}, + Number = {1}, + Pages = {1--20}, + Title = {Stability of fluid interfaces carrying an electric current + in the presence of a magnetic field}, + Volume = {11}, + Year = {1992} +} + +###Article{ pigny-moreau-92, + Author = {Pigny, S. and Moreau, R.}, + Journal = {Eur. J. Mech., B/ Fluids}, + Number = {1}, + Pages = {1--20}, + Title = {Stability of fluid interfaces carrying an electric current + in the presence of a magnetic field}, + Volume = {11}, + Year = {1992} +} + +@PhdThesis{ piperno-95, + Author = {Piperno, S.}, + School = {Ecole Nationale des Ponts et Chauss{\'e}es}, + Title = {Simulation num{\'e}rique de ph{\'e}nom{\`e}nes + d'interaction fluide-structure}, + Year = {1995} +} + +###PhdThesis{ piperno-95, + Author = {Piperno, S.}, + School = {Ecole Nationale des Ponts et Chauss{\'e}es}, + Title = {Simulation num{\'e}rique de ph{\'e}nom{\`e}nes + d'interaction fluide-structure}, + Year = {1995} +} + +@Article{ piperno-97, + Author = {Piperno, S.}, + code = {fsi 17}, + fjournal = {International Journal for Numerical Methods in Fluids}, + Journal = {Internat. J. Numer. Methods Fluids}, + Number = {10}, + Pages = {1207--1226}, + Title = {Explicit/implicit fluid/structure staggered procedures + with a structural predictor and fluid subcycling for 2{D} + inviscid aeroelastic simulations}, + Volume = {25}, + Year = {1997} +} + +###Article{ piperno-97, + Author = {Piperno, S.}, + code = {fsi 17}, + fjournal = {International Journal for Numerical Methods in Fluids}, + Journal = {Internat. J. Numer. Methods Fluids}, + Number = {10}, + Pages = {1207--1226}, + Title = {Explicit/implicit fluid/structure staggered procedures + with a structural predictor and fluid subcycling for 2{D} + inviscid aeroelastic simulations}, + Volume = {25}, + Year = {1997} +} + +@Article{ piperno-farhat-larrouturou-95, + Author = {Piperno, S. and Farhat, C. and Larrouturou, B.}, + code = {fsi 18}, + Journal = {Comp. Meth. Appl. Mech. Engrg.}, + Pages = {79-112}, + Title = {Partitioned procedures for the transient solution of + coupled aeroelastic problems. {Part I}: {M}odel problem, + theory and two-dimensional application}, + Volume = {124}, + Year = {1995} +} + +###Article{ piperno-farhat-larrouturou-95, + Author = {Piperno, S. and Farhat, C. and Larrouturou, B.}, + code = {fsi 18}, + Journal = {Comp. Meth. Appl. Mech. Engrg.}, + Pages = {79-112}, + Title = {Partitioned procedures for the transient solution of + coupled aeroelastic problems. {Part I}: {M}odel problem, + theory and two-dimensional application}, + Volume = {124}, + Year = {1995} +} + +@Article{ pirola_choice_2017, + Title = {On the Choice of Outlet Boundary Conditions for + Patient-Specific Analysis of Aortic Flow Using + Computational Fluid Dynamics}, + Volume = {60}, + JournalTitle = {Journal of Biomechanics}, + Year = {2017}, + Pages = {15--21}, + Author = {Pirola, S. and Cheng, Z. and Jarral, O. A. and O'Regan, D. + P. and Pepper, J. R. and Athanasiou, T. and Xu, X. Y.} +} + +@Book{ pironneau, + Author = {Pironneau, O.}, + Publisher = {Wiley}, + Title = {Finite element methods for fluids}, + Year = {1989} +} + +###Book{ pironneau, + Author = {Pironneau, O.}, + Publisher = {Wiley}, + Title = {Finite element methods for fluids}, + Year = {1989} +} + +@Article{ ploegstra2018followup, + Title = "Pulmonary arterial stiffness indices assessed by + intravascular ultrasound in children with early pulmonary + vascular disease: Prediction of advanced disease and + mortality during 20-year follow-up", + Abstract = "Aims Prognosis in children with pulmonary vascular disease + (PVD) is closely linked to right ventricular (RV) failure + due to increased RV-afterload. Pulmonary arterial (PA) + stiffening is known to occur early in the course of PVD and + constitutes a main component of RV-afterload. This study + aimed to evaluate the clinical value of PA-stiffness in + children with PVD by determining its association with + advanced pulmonary arterial hypertension (PAH) and + mortality at long-term follow-up.Methods and results + Forty-one children with various stages of arterial PVD, + defined as mean PA-pressure >= 20 mmHg and/or + pulmonary-to-systemic flow-ratio >= 1.2, and mean pulmonary + capillary wedge pressureConclusion In children with PVD, + PA-stiffness indices assessed by IVUS predict advanced PAH + and mortality at long term follow-up. Especially in + patients with favourable haemodynamics, assessment of + intrinsic PA-stiffness may enhance the prognostication of + disease progression and survival.", + Keywords = "pulmonary vascular disease, pulmonary arterial + hypertension, congenital heart disease, outcome, + paediatrics, stiffness, CONGENITAL HEART-DISEASE, + HYPERTENSION, DIAGNOSIS, THERAPY, DISTENSIBILITY, + GUIDELINES, RESISTANCE, DEFECTS, CLOSURE, REPAIR", + Author = "Mark-Jan Ploegstra and Brokelman, {Jody G. M.} and + Roos-Hesselink, {Jolien W.} and Douwes, {Johannes M.} and + {van Osch-Gevers}, {Lenny M.} and Hoendermis, {Elke S.} and + {van den Bosch}, {Annemien E.} and Maarten Witsenburg and + Beatrijs Bartelds and Hillege, {Hans L.} and Berger, {Rolf + M. F.}", + Year = "2018", + Month = "2", + day = "1", + DOI = "10.1093/ehjci/jex015", + Language = "English", + Volume = "19", + Pages = "216--224", + Journal = "European heart journal-Cardiovascular imaging", + ISSN = "2047-2404", + Publisher = "Oxford University Press", + Number = "2" +} + +@Article{ pm-dc-plt-09, + Author = {Moireau, P. and Chapelle, D. and Le Tallec, P.}, + Title = {Filtering for distributed mechanical systems using + position measurements: Perspectives in medical imaging}, + Journal = {Inverse Problems}, + Volume = 25, + Number = 3, + Pages = {035010 (25pp)}, + Note = {doi:10.1088/0266-5611/25/3/035010}, + Year = 2009 +} + +###Article{ pm-dc-plt-09, + Author = {Moireau, P. and Chapelle, D. and Le Tallec, P.}, + Title = {Filtering for distributed mechanical systems using + position measurements: Perspectives in medical imaging}, + Journal = {Inverse Problems}, + Volume = 25, + Number = 3, + Pages = {035010 (25pp)}, + Note = {doi:10.1088/0266-5611/25/3/035010}, + Year = 2009 +} + +@Article{ pontrelli-00, + Author = {Pontrelli, G.}, + Journal = {Math. Models Methods Appl. Sci.}, + Number = {2}, + Pages = {187--202}, + Title = {Blood flow through a circular pipe with an impulsive + pressure gradient}, + Volume = {10}, + Year = {2000} +} + +###Article{ pontrelli-00, + Author = {Pontrelli, G.}, + Journal = {Math. Models Methods Appl. Sci.}, + Number = {2}, + Pages = {187--202}, + Title = {Blood flow through a circular pipe with an impulsive + pressure gradient}, + Volume = {10}, + Year = {2000} +} + +@Book{ pope_turbulent_2000, + Title = {Turbulent Flows}, + Author = {Pope, S. B.}, + Year = {2000}, + Publisher = {{Cambridge University Press}}, + Address = {{Cambridge ; New York}}, + ISBN = {978-0-521-59125-6 978-0-521-59886-6}, + lccn = {QA913 .P64 2000} +} + +###Book{ pope_turbulent_2000, + Location = {{Cambridge ; New York}}, + Title = {Turbulent Flows}, + ISBN = {978-0-521-59125-6 978-0-521-59886-6}, + PageTotal = {771}, + Publisher = {{Cambridge University Press}}, + Date = {2000}, + Author = {Pope, S. B.} +} + +@Article{ poprawski-etal-09, + Author = {Poprawski, K. and Michalski, M. and Lawniczak, M. and + Lacka, K.}, + Title = {Cardiovascular abnormalities in patients with Turner + syndrome according to karyotype: own experience and + literature review}, + Journal = {Pol Arch Med Wewn}, + Volume = {119}, + Year = {2009}, + Number = {7-8}, + Pages = {453-60}, + pubmedid = {19776685}, + ISSN = {0032-3772} +} + +###Article{ poprawski-etal-09, + Author = {Poprawski, K. and Michalski, M. and Lawniczak, M. and + Lacka, K.}, + Title = {Cardiovascular abnormalities in patients with Turner + syndrome according to karyotype: own experience and + literature review}, + Journal = {Pol Arch Med Wewn}, + Volume = {119}, + Year = {2009}, + Number = {7-8}, + Pages = {453-60}, + URL = {http://www.biomedsearch.com/nih/Cardiovascular-abnormalities-in-patients-with/19776685.html}, + pubmedid = {19776685}, + ISSN = {0032-3772} +} + +@Article{ potanin-93, + Annote = {blood, aggregation, shear flow}, + Author = {Potanin, A.A.}, + code = {cel1}, + Journal = {J. Colloid Interface Sci.}, + Pages = {399-410}, + Title = {On the computer simulation of the deformation and breakup + of colloidal aggregates in shear flow}, + Volume = {157}, + Year = {1993} +} + +###Article{ potanin-93, + Annote = {blood, aggregation, shear flow}, + Author = {Potanin, A.A.}, + code = {cel1}, + Journal = {J. Colloid Interface Sci.}, + Pages = {399-410}, + Title = {On the computer simulation of the deformation and breakup + of colloidal aggregates in shear flow}, + Volume = {157}, + Year = {1993} +} + +@Article{ potanin-uriev-91, + Annote = {blood, aggregation, shear flow}, + Author = {Potanin, A.A. and Uriev, N.B.}, + code = {cel2}, + Journal = {J. Colloid. interface sci.}, + Number = {2}, + Pages = {385-395}, + Title = {Microrheological models of aggregated suspensions in shear + flow}, + Volume = {142}, + Year = {1990} +} + +###Article{ potanin-uriev-91, + Annote = {blood, aggregation, shear flow}, + Author = {Potanin, A.A. and Uriev, N.B.}, + code = {cel2}, + Journal = {J. Colloid. interface sci.}, + Number = {2}, + Pages = {385-395}, + Title = {Microrheological models of aggregated suspensions in shear + flow}, + Volume = {142}, + Year = {1990} +} + +@Article{ potocnik-laroche-01, + Author = {Potocnik, V., Laroche, F.}, + Journal = {Light Metal}, + Pages = {419-425}, + Title = {Comparison of measured and calculated metal pad velocities + for different prebake cell designs}, + Year = {2001} +} + +###Article{ potocnik-laroche-01, + Author = {Potocnik, V., Laroche, F.}, + Journal = {Light Metal}, + Pages = {419-425}, + Title = {Comparison of measured and calculated metal pad velocities + for different prebake cell designs}, + Year = {2001} +} + +@Article{ potse-etal-06, + Author = {Potse, M. and Dube, B. and Richer, J. and Vinet, A. and + Gulrajani, R.M.}, + Journal = {IEEE Transactions on Biomedical Engineering}, + Volume = {53}, + Issue = {}, + Pages = {2425–-2435}, + Title = {A comparison of monodomain and bidomain reaction-diffusion + models for action potential propagation in the human + heart}, + Year = {2006} +} + +@PhdThesis{ poussineau-07, + Author = {Poussineau, Nicole}, + Title = {R\'eduction variationnelle d'un couplage fluide-structure. + Application \`a l'h\'emodynamique.}, + School = {Universit\'e Pierre et Marie Curie, Paris 6}, + Year = 2007 +} + +###PhdThesis{ poussineau-07, + Author = {Poussineau, Nicole}, + Title = {R\'eduction variationnelle d'un couplage fluide-structure. + Application \`a l'h\'emodynamique.}, + School = {Universit\'e Pierre et Marie Curie, Paris 6}, + Year = 2007 +} + +@Article{ presbitero1987long, + Title = {Long term results (15-30 years) of surgical repair of + aortic coarctation.}, + Author = {Presbitero, P and Demarie, D and Villani, M and Perinetto, + E Actis and Riva, G and Orzan, F and Bobbio, M and Morea, M + and Brusca, A}, + Journal = {British heart journal}, + Volume = {57}, + Number = {5}, + Pages = {462--467}, + Year = {1987}, + Publisher = {BMJ Publishing Group Ltd and British Cardiovascular + Society} +} + +###Article{ presbitero1987long, + Title = {Long term results (15-30 years) of surgical repair of + aortic coarctation.}, + Author = {Presbitero, P and Demarie, D and Villani, M and Perinetto, + E Actis and Riva, G and Orzan, F and Bobbio, M and Morea, M + and Brusca, A}, + Journal = {British heart journal}, + Volume = {57}, + Number = {5}, + Pages = {462--467}, + Year = {1987}, + Publisher = {BMJ Publishing Group Ltd and British Cardiovascular + Society} +} + +@Book{ preumont-02, + Author = {Preumont, A.}, + date-added = {2009-03-10 12:19:26 -0700}, + date-modified = {2009-03-10 12:19:35 -0700}, + Edition = {2nd}, + Month = {February}, + Publisher = {Kluwer Academic Publishers}, + Title = {Vibration Control of Active Structures, An Introduction}, + Year = {2002} +} + +###Book{ preumont-02, + Author = {Preumont, A.}, + date-added = {2009-03-10 12:19:26 -0700}, + date-modified = {2009-03-10 12:19:35 -0700}, + Edition = {2nd}, + Month = {February}, + Publisher = {Kluwer Academic Publishers}, + Title = {Vibration Control of Active Structures, An Introduction}, + Year = {2002} +} + +@Article{ pries2008review, + Title = {A review of methods for assessment of coronary + microvascular disease in both clinical and experimental + settings}, + Author = {Pries, Axel R and Habazettl, Helmut and Ambrosio, Giuseppe + and Hansen, Peter Riis and Kaski, Juan Carlos and + Sch{\"a}chinger, Volker and Tillmanns, Harald and Vassalli, + Giuseppe and Tritto, Isabella and Weis, Michael and others}, + Journal = {Cardiovascular research}, + Year = {2008}, + Publisher = {The Oxford University Press} +} + +@MastersThesis{ proudfoot-09, + Author = {Proudfoot, N.}, + School = {McMaster University}, + Title = {The acute effects of moderate intensity exercise on + vascular stiffness in children with repaired coarctation of + the aorta}, + Year = {2009} +} + +###MastersThesis{ proudfoot-09, + Author = {Proudfoot, N.}, + School = {McMaster University}, + Title = {The acute effects of moderate intensity exercise on + vascular stiffness in children with repaired coarctation of + the aorta}, + Year = {2009} +} + +@Article{ quaini-quarteroni-07, + Author = {Quaini, A. and Quarteroni, A.}, + Journal = {Math. Models Methods Appl. Sci.}, + Number = {6}, + Pages = {957--983}, + Title = {A semi-implicit approach for fluid-structure interaction + based on an algebraic fractional step method}, + Volume = {17}, + Year = {2007} +} + +###Article{ quaini-quarteroni-07, + Author = {Quaini, A. and Quarteroni, A.}, + Journal = {Math. Models Methods Appl. Sci.}, + Number = {6}, + Pages = {957--983}, + Title = {A semi-implicit approach for fluid-structure interaction + based on an algebraic fractional step method}, + Volume = {17}, + Year = {2007} +} + +@InCollection{ quartapelle-muzzio-88, + Author = {Quartapelle, L. and Muzzio, A.}, + BookTitle = {Computational Fluid Dynamics}, + Editor = {de Vahl Davis, G. and Fletcher, C.}, + Pages = {609-619}, + Publisher = {{Elsevier Science Publishers, (North-Holland)}}, + Title = {Decoupled solution of a vector {Poisson} equations with + boundary condition coupling}, + Year = {1988} +} + +###InCollection{ quartapelle-muzzio-88, + Author = {Quartapelle, L. and Muzzio, A.}, + BookTitle = {Computational Fluid Dynamics}, + Editor = {de Vahl Davis, G. and Fletcher, C.}, + Pages = {609-619}, + Publisher = {{Elsevier Science Publishers, (North-Holland)}}, + Title = {Decoupled solution of a vector {Poisson} equations with + boundary condition coupling}, + Year = {1988} +} + +@Article{ quarteroni-saleri-veneziani-00, + Author = {Quarteroni, A. and Saleri, F. and Veneziani, A.}, + Journal = {Comp. Methods in Appl. Mech. Engng.}, + Number = {1-3}, + Pages = {505-526}, + Title = {Factorization methods for the numerical approximation of + the {Navier-Stokes} equations}, + Volume = {188}, + Year = {2000} +} + +###Article{ quarteroni-saleri-veneziani-00, + Author = {Quarteroni, A. and Saleri, F. and Veneziani, A.}, + Journal = {Comp. Methods in Appl. Mech. Engng.}, + Number = {1-3}, + Pages = {505-526}, + Title = {Factorization methods for the numerical approximation of + the {Navier-Stokes} equations}, + Volume = {188}, + Year = {2000} +} + +@Article{ quarteroni-saleri-veneziani-99, + Author = {Quarteroni, A. and Saleri, F. and Veneziani, A.}, + Journal = { J. Math. Pures Appl.}, + Number = {5}, + Pages = {473-503}, + Title = {Analysis of the {Yosida} method for the incompressible + {Navier-Stokes} equations}, + Volume = {78}, + Year = {1999} +} + +###Article{ quarteroni-saleri-veneziani-99, + Author = {Quarteroni, A. and Saleri, F. and Veneziani, A.}, + Journal = { J. Math. Pures Appl.}, + Number = {5}, + Pages = {473-503}, + Title = {Analysis of the {Yosida} method for the incompressible + {Navier-Stokes} equations}, + Volume = {78}, + Year = {1999} +} + +@Article{ quarteroni-tuveri-veneziani-00, + Annote = {hemodynamics}, + Author = {Quarteroni, A. and Tuveri, M. and Veneziani, A.}, + code = {hemo}, + Journal = {Comp. Vis. Science}, + Pages = {163-197}, + Title = {Computational {V}ascular {F}luid {D}ynamics: {P}roblems, + {M}odels and {M}ethods}, + Volume = {2}, + Year = {2000} +} + +###Article{ quarteroni-tuveri-veneziani-00, + Annote = {hemodynamics}, + Author = {Quarteroni, A. and Tuveri, M. and Veneziani, A.}, + code = {hemo}, + Journal = {Comp. Vis. Science}, + Pages = {163-197}, + Title = {Computational {V}ascular {F}luid {D}ynamics: {P}roblems, + {M}odels and {M}ethods}, + Volume = {2}, + Year = {2000} +} + +@Book{ quarteroni-valli-97, + Author = {Quarteroni, A. and Valli, A.}, + Publisher = {Springer}, + Title = {Numerical Approximation of Partial Differential + equations}, + Year = {1997} +} + +###Book{ quarteroni-valli-97, + Author = {Quarteroni, A. and Valli, A.}, + Publisher = {Springer}, + Title = {Numerical Approximation of Partial Differential + equations}, + Year = {1997} +} + +@Book{ quarteroni-valli-99, + Author = {Quarteroni, A. and Valli, A.}, + Note = {Oxford Science Publications}, + Publisher = {The Clarendon Press Oxford University Press}, + Series = {Numerical Mathematics and Scientific Computation}, + Title = {Domain decomposition methods for partial differential + equations}, + Year = {1999} +} + +###Book{ quarteroni-valli-99, + Author = {Quarteroni, A. and Valli, A.}, + Note = {Oxford Science Publications}, + Publisher = {The Clarendon Press Oxford University Press}, + Series = {Numerical Mathematics and Scientific Computation}, + Title = {Domain decomposition methods for partial differential + equations}, + Year = {1999} +} + +@Article{ quarteroni-veneziani-zunino, + Author = {Quarteroni, A. and Veneziani, A. and Zunino, P.}, + Journal = {SIAM-JSSC}, + Note = {(submitted)}, + Title = {Analysis of a Domain Decomposition Method for Blood Solute + Dynamics}, + Year = {2000} +} + +###Article{ quarteroni-veneziani-zunino, + Author = {Quarteroni, A. and Veneziani, A. and Zunino, P.}, + Journal = {SIAM-JSSC}, + Note = {(submitted)}, + Title = {Analysis of a Domain Decomposition Method for Blood Solute + Dynamics}, + Year = {2000} +} + +@Article{ quarteroni_manzoni_vergara_2017, + Title = {The cardiovascular system: Mathematical modelling, + numerical algorithms and clinical applications}, + Volume = {26}, + DOI = {10.1017/S0962492917000046}, + Journal = {Acta Numerica}, + Publisher = {Cambridge University Press}, + Author = {Quarteroni, A. and Manzoni, A. and Vergara, C.}, + Year = {2017}, + Pages = {365?590} +} + +@InProceedings{ raback-ruokalainen-lyly-jarvinen-01, + Author = {R\.aback, P. and Ruokolainen, J. and Lyly, M. and + J{\"a}rvinen, E.}, + BookTitle = {ECCOMAS Computational Fluid Dynamics Conference, Swansea, + UK}, + Title = {Fluid-structure interaction boundary conditions by + artificial compressibility}, + Year = {2001} +} + +###InProceedings{ raback-ruokalainen-lyly-jarvinen-01, + Author = {R\.aback, P. and Ruokolainen, J. and Lyly, M. and + J{\"a}rvinen, E.}, + BookTitle = {ECCOMAS Computational Fluid Dynamics Conference, Swansea, + UK}, + Title = {Fluid-structure interaction boundary conditions by + artificial compressibility}, + Year = {2001} +} + +@Article{ rabby_pulsatile_2013, + langid = {english}, + Title = {Pulsatile {{Non}}-{{Newtonian Blood Flow}} through a + {{Model}} of {{Arterial Stenosis}}}, + Volume = {56}, + ISSN = {18777058}, + URL = {https://linkinghub.elsevier.com/retrieve/pii/S1877705813004657}, + DOI = {10.1016/j.proeng.2013.03.111}, + JournalTitle = {Procedia Engineering}, + URLDate = {2019-02-13}, + Year = {2013}, + Pages = {225-231}, + Author = {Rabby, Mir Golam and Razzak, Abdur and Molla, Md. Mamun} +} + +@Article{ rajagopalan-tien-76, + Author = {Rajagopalan, R. and Tien, C.}, + code = {por26}, + Journal = {AIChE J.}, + Number = {3}, + Pages = {523-533}, + Title = { Trajectory analysis of deep-bed filtration with the + sphere-in-cell porous media model}, + Volume = {22}, + Year = {1976} +} + +###Article{ rajagopalan-tien-76, + Author = {Rajagopalan, R. and Tien, C.}, + code = {por26}, + Journal = {AIChE J.}, + Number = {3}, + Pages = {523-533}, + Title = { Trajectory analysis of deep-bed filtration with the + sphere-in-cell porous media model}, + Volume = {22}, + Year = {1976} +} + +@InCollection{ rannacher1992chorin, + Title = {On Chorin's projection method for the incompressible + Navier-Stokes equations}, + Author = {Rannacher, Rolf}, + BookTitle = {The Navier-Stokes equations II—theory and numerical + methods}, + Pages = {167--183}, + Year = {1992}, + Publisher = {Springer} +} + +@Article{ rannacher2001optimal, + Title = {An optimal control approach to error estimation and mesh + adaptation in finite element methods}, + Author = {Rannacher, Rolf and Becker, R}, + Journal = {Acta Numerica}, + Volume = {10}, + Number = {1}, + Pages = {102}, + Year = {2001} +} + +@Article{ rannacher383adaptive, + Title = {Adaptive finite element methods in flow computations}, + Author = {Rannacher, Rolf}, + Journal = {Recent Advances in Adaptive Computation. Contemporary + Mathematics}, + Volume = {383}, + Pages = {183--176} +} + +@Article{ rappaz-touzani-91, + Author = {Rappaz, J. and Touzani, R.}, + Journal = {Eur. Jour. Mech., B/Fluids}, + Number = {5}, + Pages = {451-453}, + Title = {Modelling of a two-dimensional magnetohydrodynamic + problem}, + Volume = {10}, + Year = {1991} +} + +###Article{ rappaz-touzani-91, + Author = {Rappaz, J. and Touzani, R.}, + Journal = {Eur. Jour. Mech., B/Fluids}, + Number = {5}, + Pages = {451-453}, + Title = {Modelling of a two-dimensional magnetohydrodynamic + problem}, + Volume = {10}, + Year = {1991} +} + +@Article{ rappaz-touzani-91b, + Annote = {mhd, existence}, + Author = {Rappaz, J. and Touzani, R.}, + code = {mhd11}, + Journal = {Mod{\'e}lisation math{\'e}matique et Analyse num{\'e}rique}, + Number = {2}, + Pages = {347-364}, + Title = {On a two-dimensional magnetohydrodynamic problem. {I)} + Modelling and analysis}, + Volume = {26}, + Year = {1991} +} + +###Article{ rappaz-touzani-91b, + Annote = {mhd, existence}, + Author = {Rappaz, J. and Touzani, R.}, + code = {mhd11}, + Journal = {Mod{\'e}lisation math{\'e}matique et Analyse num{\'e}rique}, + Number = {2}, + Pages = {347-364}, + Title = {On a two-dimensional magnetohydrodynamic problem. {I)} + Modelling and analysis}, + Volume = {26}, + Year = {1991} +} + +@Article{ rappaz-touzani-95, + Annote = {mhd, finite element}, + Author = {Rappaz, J. and Touzani, R.}, + code = {mhd12}, + Journal = {Mod{\'e}lisation math{\'e}matique et Analyse num{\'e}rique}, + Number = {2}, + Pages = {215-235}, + Title = {On a two-dimensional magnetohydrodynamic problem. {II)} + Numerical analysis}, + Volume = {30}, + Year = {1996} +} + +###Article{ rappaz-touzani-95, + Annote = {mhd, finite element}, + Author = {Rappaz, J. and Touzani, R.}, + code = {mhd12}, + Journal = {Mod{\'e}lisation math{\'e}matique et Analyse num{\'e}rique}, + Number = {2}, + Pages = {215-235}, + Title = {On a two-dimensional magnetohydrodynamic problem. {II)} + Numerical analysis}, + Volume = {30}, + Year = {1996} +} + +@Article{ rasmussen-hassager-saasen-98, + Author = {Rasmussen, H.K. and Hassager, O. and Saasen, A.}, + code = {mob7}, + Journal = {Int. Jour. Num. Meth. Fluids}, + Pages = {859-881}, + Title = {Viscous flow with large fluid-fluid interface + displacement}, + Volume = {28}, + Year = {1998} +} + +###Article{ rasmussen-hassager-saasen-98, + Author = {Rasmussen, H.K. and Hassager, O. and Saasen, A.}, + code = {mob7}, + Journal = {Int. Jour. Num. Meth. Fluids}, + Pages = {859-881}, + Title = {Viscous flow with large fluid-fluid interface + displacement}, + Volume = {28}, + Year = {1998} +} + +@Article{ rausch2011jmbbm, + Title = {Material model of lung parenchyma based on living + precision-cut lung slice testing }, + Author = {S.M.K. Rausch and C. Martin and P.B. Bornemann and S. + Uhlig and W.A. Wall}, + Journal = {Journal of the Mechanical Behavior of Biomedical Materials + }, + Year = {2011}, + Number = {4}, + Pages = {583 - 592}, + Volume = {4}, + Abstract = {We describe a novel constitutive model of lung parenchyma, + which can be used for continuum mechanics based predictive + simulations. To develop this model, we experimentally + determined the nonlinear material behavior of rat lung + parenchyma. This was achieved via uni-axial tension tests + on living precision-cut rat lung slices. The resulting + force?displacement curves were then used as inputs for an + inverse analysis. The Levenberg?Marquardt algorithm was + utilized to optimize the material parameters of + combinations and recombinations of established + strain?energy density functions (SEFs). Comparing the + best-fits of the tested \{SEFs\} we found W p a r = 4.1 kPa + ( I ¯ 1 ? 3 ) 2 + 20.7 kPa ( I ¯ 1 ? 3 ) 3 + 4.1 kPa ( ? + 2 ln J + J 2 ? 1 ) to be the optimal constitutive model. + This \{SEF\} consists of three summands: the first can be + interpreted as the contribution of the elastin fibers and + the ground substance, the second as the contribution of the + collagen fibers while the third controls the volumetric + change. The presented approach will help to model the + behavior of the pulmonary parenchyma and to quantify the + strains and stresses during ventilation. }, + DOI = {http://dx.doi.org/10.1016/j.jmbbm.2011.01.006}, + File = {rausch11.pdf:rausch11.pdf:PDF}, + ISSN = {1751-6161}, + Keywords = {Alveoli}, + timestamp = {2015/09/23}, + URL = {http://www.sciencedirect.com/science/article/pii/S1751616111000075} +} + +@InCollection{ raviart1977mixed, + Title = {A mixed finite element method for 2-nd order elliptic + problems}, + Author = {Raviart, Pierre-Arnaud and Thomas, Jean-Marie}, + BookTitle = {Mathematical aspects of finite element methods}, + Pages = {292--315}, + Year = {1977}, + Publisher = {Springer} +} + +@Article{ raymond-10, + Author = {Raymond, Jean-Pierre}, + date-added = {2012-02-27 13:47:31 +0000}, + date-modified = {2012-02-27 13:52:18 +0000}, + DOI = {10.1137/080744761}, + Journal = {SIAM J. Control Optim.}, + Number = {8}, + Pages = {5398--5443}, + Title = {Feedback stabilization of a fluid-structure model}, + Volume = {48}, + Year = {2010} +} + +###Article{ raymond-10, + Author = {Raymond, Jean-Pierre}, + date-added = {2012-02-27 13:47:31 +0000}, + date-modified = {2012-02-27 13:52:18 +0000}, + DOI = {10.1137/080744761}, + Journal = {SIAM J. Control Optim.}, + Number = {8}, + Pages = {5398--5443}, + Title = {Feedback stabilization of a fluid-structure model}, + Volume = {48}, + Year = {2010}, + bdsk-url-1 = {http://dx.doi.org/10.1137/080744761} +} + +@Book{ ref, + Author = "Author(s)", + Title = "{Title}", + Publisher = "Eds.", + Year = "year" +} + +###Article{ ref, + Author = "Authors", + Title = "Title", + Journal = "journal", + Volume = "1", + Pages = "pp", + Year = "year" +} + +###Book{ ref, + Author = "Author(s)", + Title = "{Title}", + Publisher = "Eds.", + Year = "year" +} + +###Article{ ref, + Author = "Authors", + Title = "Title", + Journal = "journal", + Volume = "1", + Pages = "pp", + Year = "year" +} + +@Article{ rehmann-welty-harvey-99, + Author = {Rehmann, L.L.C. and Welty, C. and Harvey, R.W.}, + code = {por20}, + Journal = {Water resources research}, + Number = {7}, + Pages = {1987-2006}, + Title = {Stochastic analysis of virus transport in aquifers}, + Volume = {35}, + Year = {1999} +} + +###Article{ rehmann-welty-harvey-99, + Author = {Rehmann, L.L.C. and Welty, C. and Harvey, R.W.}, + code = {por20}, + Journal = {Water resources research}, + Number = {7}, + Pages = {1987-2006}, + Title = {Stochastic analysis of virus transport in aquifers}, + Volume = {35}, + Year = {1999} +} + +@Article{ rengier_noninvasive_2014, + Title = {Noninvasive Pressure Difference Mapping Derived from + {{4D}} Flow {{MRI}} in Patients with Unrepaired and + Repaired Aortic Coarctation}, + Volume = {4}, + Number = {2}, + JournalTitle = {Cardiovascular diagnosis and therapy}, + Year = {2014}, + Pages = {97}, + Author = {Rengier, Fabian and Delles, Michael and Eichhorn, Joachim + and Azad, Yoo-Jin and von Tengg-Kobligk, Hendrik and + Ley-Zaporozhan, Julia and Dillmann, Rüdiger and Kauczor, + Hans-Ulrich and Unterhinninghofen, Roland and Ley, + Sebastian}, + Options = {useprefix=true} +} + +@Article{ rengier_noninvasive_2015, + Title = {Noninvasive {{4D}} Pressure Difference Mapping Derived + from {{4D}} Flow {{MRI}} in Patients with Repaired Aortic + Coarctation: Comparison with Young Healthy Volunteers}, + Volume = {31}, + ShortTitle = {Noninvasive {{4D}} Pressure Difference Mapping Derived + from {{4D}} Flow {{MRI}} in Patients with Repaired Aortic + Coarctation}, + Number = {4}, + JournalTitle = {The international journal of cardiovascular imaging}, + Year = {2015}, + Pages = {823--830}, + Author = {Rengier, Fabian and Delles, Michael and Eichhorn, Joachim + and Azad, Yoo-Jin and von Tengg-Kobligk, Hendrik and + Ley-Zaporozhan, Julia and Dillmann, Rüdiger and Kauczor, + Hans-Ulrich and Unterhinninghofen, Roland and Ley, + Sebastian}, + Options = {useprefix=true} +} + +@Article{ rengier_vitro_2011, + Title = {In Vitro Validation of Flow Measurements in an Aortic + Nitinol Stent Graft by Velocity-Encoded {{MRI}}}, + Author = {Rengier, Fabian and Delles, Michael and Weber, Tim + Frederik and B{\"o}ckler, Dittmar and Ley, Sebastian and + Kauczor, Hans-Ulrich and {von Tengg-Kobligk}, Hendrik}, + Year = {2011}, + Volume = {80}, + Pages = {163--167}, + Journal = {European journal of radiology}, + Number = {1} +} + +@Article{ reuben-shannon-90, + Annote = {blood, red cell, sedimentation, aggregation}, + Author = { Reuben, A. J. and Shannon, A. G. }, + code = {cel9}, + Journal = {IMA J. Math. Appl. Med. Biol.}, + Number = {3}, + Pages = {145-156}, + Title = {Some problems in the mathematical modelling of erythrocyte + sedimentation}, + Volume = {7}, + Year = {1990} +} + +###Article{ reuben-shannon-90, + Annote = {blood, red cell, sedimentation, aggregation}, + Author = { Reuben, A. J. and Shannon, A. G. }, + code = {cel9}, + Journal = {IMA J. Math. Appl. Med. Biol.}, + Number = {3}, + Pages = {145-156}, + Title = {Some problems in the mathematical modelling of erythrocyte + sedimentation}, + Volume = {7}, + Year = {1990} +} + +@Article{ reumann-reinerth-2004, + Author = {Reumann, M. and Reinerth, G. and Seemann, G. and Vahl, + C.F. and Hagl, S. and D{\"o}ssel, O.}, + Journal = {International Congress Series}, + Pages = {1102-1107}, + Title = {Computer-aided electrode positioning in biventricular + pacing}, + Volume = {1268}, + Year = {2004} +} + +###Article{ reumann-reinerth-2004, + Author = {Reumann, M. and Reinerth, G. and Seemann, G. and Vahl, + C.F. and Hagl, S. and D{\"o}ssel, O.}, + Journal = {International Congress Series}, + Pages = {1102-1107}, + Title = {Computer-aided electrode positioning in biventricular + pacing}, + Volume = {1268}, + Year = {2004} +} + +###Article{ reumann-reinerth-2004, + Author = {Reumann, M. and Reinerth, G. and Seemann, G. and Vahl, + C.F. and Hagl, S. and D{\"o}ssel, O.}, + Journal = {International Congress Series}, + Pages = {1102-1107}, + Title = {Computer-aided electrode positioning in biventricular + pacing}, + Volume = {1268}, + Year = {2004} +} + +###Article{ reumann-reinerth-2004, + Author = {Reumann, M. and Reinerth, G. and Seemann, G. and Vahl, + C.F. and Hagl, S. and D{\"o}ssel, O.}, + Journal = {International Congress Series}, + Pages = {1102-1107}, + Title = {Computer-aided electrode positioning in biventricular + pacing}, + Volume = {1268}, + Year = {2004} +} + +@Article{ rhee-lee-98, + Author = {Rhee, K. and Lee, S.M.}, + Journal = {Annals of Biomedical Engineering}, + Title = {Effects of radial wall motion and flow waveform on the + wall shear rate distribution in the divergent vascular + graft}, + Year = {1998} +} + +###Article{ rhee-lee-98, + Author = {Rhee, K. and Lee, S.M.}, + Journal = {Annals of Biomedical Engineering}, + Title = {Effects of radial wall motion and flow waveform on the + wall shear rate distribution in the divergent vascular + graft}, + Year = {1998} +} + +@Article{ rice2008approximate, + Title = {Approximate model of cooperative activation and + crossbridge cycling in cardiac muscle using ordinary + differential equations}, + Author = {Rice, John Jeremy and Wang, Fei and Bers, Donald M and De + Tombe, Pieter P}, + Journal = {Biophysical journal}, + Volume = {95}, + Number = {5}, + Pages = {2368--2390}, + Year = {2008}, + Publisher = {Elsevier} +} + +@Article{ richter_cardiology_2006, + langid = {english}, + Title = {Cardiology Is Flow}, + Volume = {113}, + ISSN = {1524-4539}, + DOI = {10.1161/CIRCULATIONAHA.106.632687}, + Number = {23}, + JournalTitle = {Circulation}, + ShortJournal = {Circulation}, + Year = {2006-06-13}, + Pages = {2679-2682}, + Author = {Richter, Yoram and Edelman, Elazer R.}, + EPrintType = {pmid}, + EPrint = {16769924} +} + +@Article{ riesenkampff2014pressure, + Title = {Pressure fields by flow-sensitive, 4D, velocity-encoded + CMR in patients with aortic coarctation}, + Author = {Riesenkampff, Eug{\'e}nie and Fernandes, Joao Filipe and + Meier, Sebastian and Goubergrits, Leonid and Kropf, + Siegfried and Schubert, Stephan and Berger, Felix and + Henneumuth, Anja and Kuehne, Titus}, + Journal = {JACC: Cardiovascular Imaging}, + Volume = {7}, + Number = {9}, + Pages = {920--926}, + Year = {2014}, + Publisher = {Journal of the American College of Cardiology} +} + +@Article{ riesenkampff_pressure_2014, + Title = {Pressure Fields by Flow-Sensitive, {{4D}}, + Velocity-Encoded {{CMR}} in Patients with Aortic + Coarctation}, + Volume = {7}, + Number = {9}, + JournalTitle = {JACC: Cardiovascular Imaging}, + Year = {2014}, + Pages = {920--926}, + Author = {Riesenkampff, Eugénie and Fernandes, Joao Filipe and + Meier, Sebastian and Goubergrits, Leonid and Kropf, + Siegfried and Schubert, Stephan and Berger, Felix and + Hennemuth, Anja and Kuehne, Titus} +} + +@Article{ rijcken1999abe, + Title = {Optimization of Cardiac Fiber Orientation for Homogeneous + Fiber Strain During Ejection}, + Author = {Rijcken, J. and Bovendeerd, P.H.M. and Schoofs, A.J.G. and + van Campen, D.H. and Arts, T.}, + Journal = {Annals of Biomedical Engineering}, + Year = {1999}, + Number = {3}, + Pages = {289-297}, + Volume = {27}, + DOI = {10.1114/1.147}, + File = {rijcken99.pdf:rijcken99.pdf:PDF}, + ISSN = {0090-6964}, + Keywords = {Left ventricle; Finite-element analysis}, + Language = {English}, + Publisher = {Kluwer Academic Publishers-Plenum Publishers}, + timestamp = {2015/09/22}, + URL = {http://dx.doi.org/10.1114/1.147} +} + +@Article{ riley-et-al-92, + Author = {Riley, W.A. and Barnes, R.W. and Evans, G.W. and Burke, + G.L.}, + Journal = {Stroke}, + Pages = {952--956}, + Title = {Ultrasonic measurement of the elastic modulus of the + common carotid artery. {T}he atherosclerosis risk in + communities study}, + Volume = {23}, + Year = {1992} +} + +###Article{ riley-et-al-92, + Author = {Riley, W.A. and Barnes, R.W. and Evans, G.W. and Burke, + G.L.}, + Journal = {Stroke}, + Pages = {952--956}, + Title = {Ultrasonic measurement of the elastic modulus of the + common carotid artery. {T}he atherosclerosis risk in + communities study}, + Volume = {23}, + Year = {1992} +} + +@Article{ rinaudo2015computational, + Title = {Computational fluid dynamics simulation to evaluate aortic + coarctation gradient with contrast-enhanced CT}, + Author = {Rinaudo, Antonino and D'Ancona, Giuseppe and Baglini, + Roberto and Amaducci, Andrea and Follis, Fabrizio and + Pilato, Michele and Pasta, Salvatore}, + Journal = {Computer methods in biomechanics and biomedical + engineering}, + Volume = {18}, + Number = {10}, + Pages = {1066--1071}, + Year = {2015}, + Publisher = {Taylor \& Francis} +} + +@InBook{ roberts-thomas-91, + Author = {Roberts, J. E. and Thomas, J.-M.}, + Chapter = {Mixed and hybrid methods}, + Pages = {523--639}, + Publisher = {North-Holland}, + Title = {Handbook of numerical analysis}, + Volume = {Vol. II}, + Year = {1991} +} + +###InBook{ roberts-thomas-91, + Author = {Roberts, J. E. and Thomas, J.-M.}, + Chapter = {Mixed and hybrid methods}, + Pages = {523--639}, + Publisher = {North-Holland}, + Title = {Handbook of numerical analysis}, + Volume = {Vol. II}, + Year = {1991} +} + +@Article{ roberts2005frequency, + Title = {Frequency by decades of unicuspid, bicuspid, and tricuspid + aortic valves in adults having isolated aortic valve + replacement for aortic stenosis, with or without associated + aortic regurgitation}, + Author = {Roberts, William C and Ko, Jong M}, + Journal = {Circulation}, + Volume = {111}, + Number = {7}, + Pages = {920--925}, + Year = {2005}, + Publisher = {Am Heart Assoc} +} + +@Article{ rodriguez1994biomech, + Title = {Stress-dependent finite growth in soft elastic tissues }, + Author = {Edward K. Rodriguez and Anne Hoger and Andrew D. + McCulloch}, + Journal = {Journal of Biomechanics }, + Year = {1994}, + Number = {4}, + Pages = {455 - 467}, + Volume = {27}, + Abstract = {Growth and remodeling in tissues may be modulated by + mechanical factors such as stress. For example, in cardiac + hypertrophy, alterations in wall stress arising from + changes in mechanical loading lead to cardiac growth and + remodeling. A general continuum formulation for finite + volumetric growth in soft elastic tissues is therefore + proposed. The shape change of an unloaded tissue during + growth is described by a mapping analogous to the + deformation gradient tensor. This mapping is decomposed + into a transformation of the local zero-stress reference + state and an accompanying elastic deformation that ensures + the compatibility of the total growth deformation. Residual + stress arises from this elastic deformation. Hence, a + complete kinematic formulation for growth in general + requires a knowledge of the constitutive law for stress in + the tissue. Since growth may in turn be affected by stress + in the tissue, a general form for the stress-dependent + growth law is proposed as a relation between the symmetric + growth-rate tensor and the stress tensor. With a + thick-walled hollow cylinder of incompressible, isotropic + hyperelastic material as an example, the mechanics of left + ventricular hypertrophy are investigated. The results show + that transmurally uniform pure circumferential growth, + which may be similar to eccentric ventricular hypertrophy, + changes the state of residual stress in the heart wall. A + model of axially loaded bone is used to test a simple + stress-dependent growth law in which growth rate depends on + the difference between the stress due to loading and a + predetermined growth equilibrium stress. }, + DOI = {http://dx.doi.org/10.1016/0021-9290(94)90021-3}, + File = {rodriguez94.pdf:rodriguez94.pdf:PDF}, + ISSN = {0021-9290}, + timestamp = {2015/09/21}, + URL = {http://www.sciencedirect.com/science/article/pii/0021929094900213} +} + +@Article{ roe-81, + Author = {P. L. Roe}, + Journal = {J.C.P.}, + Pages = {357}, + Title = {Approximate {R}iemann solvers, parameter vectors and + difference schemes}, + Volume = {43}, + Year = {1981} +} + +###Article{ roe-81, + Author = {P. L. Roe}, + Journal = {J.C.P.}, + Pages = {357}, + Title = {Approximate {R}iemann solvers, parameter vectors and + difference schemes}, + Volume = {43}, + Year = {1981} +} + +@Article{ romarowski2018patient, + Title = {Patient-specific CFD modelling in the thoracic aorta with + PC-MRI--based boundary conditions: A least-square + three-element Windkessel approach}, + Author = {Romarowski, Rodrigo M and Lefieux, Adrien and Morganti, + Simone and Veneziani, Alessandro and Auricchio, + Ferdinando}, + Journal = {International journal for numerical methods in biomedical + engineering}, + Pages = {e3134}, + Year = {2018}, + Publisher = {Wiley Online Library} +} + +@Article{ romarowski_patient-specific_2018, + langid = {english}, + Title = {Patient-Specific {{CFD}} Modelling in the Thoracic Aorta + with {{PC}}-{{MRI}}–Based Boundary Conditions: {{A}} + Least-Square Three-Element {{Windkessel}} Approach}, + Volume = {34}, + ISSN = {2040-7947}, + URL = {https://onlinelibrary.wiley.com/doi/abs/10.1002/cnm.3134}, + DOI = {10.1002/cnm.3134}, + ShortTitle = {Patient-Specific {{CFD}} Modelling in the Thoracic Aorta + with {{PC}}-{{MRI}}–Based Boundary Conditions}, + Abstract = {The increasing use of computational fluid dynamics for + simulating blood flow in clinics demands the identification + of appropriate patient-specific boundary conditions for the + customization of the mathematical models. These conditions + should ideally be retrieved from measurements. However, + finite resolution of devices as well as other + practical/ethical reasons prevent the construction of + complete data sets necessary to make the mathematical + problems well posed. Available data need to be completed by + modelling assumptions, whose impact on the final solution + has to be carefully addressed. Focusing on aortic vascular + districts and related pathologies, we present here a method + for efficiently and robustly prescribing phase contrast + MRI–based patient-specific data as boundary conditions at + the domain of interest. In particular, for the outlets, the + basic idea is to obtain pressure conditions from an + appropriate elaboration of available flow rates on the + basis of a 3D/0D dimensionally heterogeneous modelling. The + key point is that the parameters are obtained by a + constrained optimization procedure. The rationale is that + pressure conditions have a reduced impact on the numerical + solution compared with velocity conditions, yielding a + simulation framework less exposed to noise and + inconsistency of the data, as well as to the arbitrariness + of the underlying modelling assumptions. Numerical results + confirm the reliability of the approach in comparison with + other patient-specific approaches adopted in the + literature.}, + Number = {11}, + JournalTitle = {International Journal for Numerical Methods in Biomedical + Engineering}, + URLDate = {2019-02-28}, + Year = {2018}, + Pages = {e3134}, + Author = {Romarowski, Rodrigo M. and Lefieux, Adrien and Morganti, + Simone and Veneziani, Alessandro and Auricchio, + Ferdinando} +} + +@Article{ romerio-secretan-86, + Annote = {mhd, aluminium}, + Author = {Romerio, M. V. and Secr{\'e}tan, M.-A.}, + code = {mhd25}, + Journal = {Computer Physics Reports}, + Pages = {327-360}, + Title = {Magnetohydrodynamics equilibrium in aluminium electrolytic + cells}, + Volume = {3}, + Year = {1986} +} + +###Article{ romerio-secretan-86, + Annote = {mhd, aluminium}, + Author = {Romerio, M. V. and Secr{\'e}tan, M.-A.}, + code = {mhd25}, + Journal = {Computer Physics Reports}, + Pages = {327-360}, + Title = {Magnetohydrodynamics equilibrium in aluminium electrolytic + cells}, + Volume = {3}, + Year = {1986} +} + +@Article{ rossi2013parallel, + Title = {Parallel adaptive mesh refinement for incompressible flow + problems}, + Author = {Rossi, Riccardo and Cotela, J and Lafontaine, Nelson + Maireni and Dadvand, Pooyan and Idelsohn, SR}, + Journal = {Computers \& Fluids}, + Volume = {80}, + Pages = {342--355}, + Year = {2013}, + Publisher = {Elsevier} +} + +@Article{ rozza_reduction_2012, + langid = {english}, + Title = {Reduction Strategies for {{PDE}}-Constrained Oprimization + Problems in {{Haemodynamics}}}, + URL = {http://preprints.sissa.it/xmlui/handle/1963/6338}, + Abstract = {Solving optimal control problems for many different + scenarios obtained by varying a set of parameters in the + state system is a computationally extensive task. In this + paper we present a new reduced framework for the + formulation, the analysis and the numerical solution of + parametrized PDE-constrained optimization problems. This + framework is based on a suitable saddle-point formulation + of the optimal control problem and exploits the reduced + basis method for the rapid and reliable solution of + parametrized PDEs, leading to a relevant computational + reduction with respect to traditional discretization + techniques such as the finite element method. This allows a + very efficient evaluation of state solutions and cost + functionals, leading to an effective solution of repeated + optimal control problems, even on domains of variable + shape, for which a further (geometrical) reduction is + pursued, relying on flexible shape parametrization + techniques. This setting is applied to the solution of two + problems arising from haemodynamics, dealing with both data + reconstruction and data assimilation over domains of + variable shape, which can be recast in a common + PDE-constrained optimization formulation.}, + URLDate = {2019-02-20}, + Year = {2012}, + Author = {Rozza, Gianluigi and Manzoni, Andrea and Negri, Federico} +} + +@Article{ rugonyi-bathe-01, + Author = {Rugonyi, S. and Bathe, K.J.}, + code = {fsi16}, + Journal = {CMES - Comp. Modeling Eng. Sci.}, + Number = {2}, + Pages = {195--212}, + Title = {On finite element analysis of fluid flows coupled with + structural interaction}, + Volume = {2}, + Year = {2001} +} + +###Article{ rugonyi-bathe-01, + Author = {Rugonyi, S. and Bathe, K.J.}, + code = {fsi16}, + Journal = {CMES - Comp. Modeling Eng. Sci.}, + Number = {2}, + Pages = {195--212}, + Title = {On finite element analysis of fluid flows coupled with + structural interaction}, + Volume = {2}, + Year = {2001} +} + +@Article{ rutz2008mrm, + Title = {Accelerated whole-heart 3D CSPAMM for myocardial motion + quantification.}, + Author = {Rutz, Andrea K. and Ryf, Salome and Plein, Sven and + Boesiger, Peter and Kozerke, Sebastian}, + Journal = {Magn Reson Med}, + Year = {2008}, + Month = {Apr}, + Number = {4}, + Pages = {755--763}, + Volume = {59}, + Abstract = {Myocardial tissue tagging using complementary spatial + modulation of magnetization (CSPAMM) allows detailed + assessment of myocardial motion. To capture the complex 3D + cardiac motion pattern, multiple 2D tagged slices are + usually acquired in different orientations. These + approaches are prone to slice misregistration and + associated with long acquisition times. In this work, a + fast method for acquiring 3D CSPAMM data is proposed that + allows measuring deformation of the whole heart in three + breath-holds of 18 heartbeats duration each. Three + acquisitions are sequentially performed with line tag + preparation in each orthogonal direction. Measurement + acceleration is achieved by applying localized tagging + preparation and a hybrid multishot, segmented echo-planar + imaging sequence. Five healthy volunteers and five patients + with myocardial infarction were measured. Midwall contours + were tracked throughout the cardiac cycle with an enhanced + variant of the harmonic phase (HARP) technique. + Circumferential shortening at end-systole ranged from + 14.1\% (base) to 20.1\% (apex) in healthy subjects. + Hypokinetic regions in patients corresponded well with + regions exhibiting hyperenhancement after contrast + injection. Time to maximum circumferential shortening + varied more significantly over the left ventricle in + patients than in volunteers (P<0.01). The proposed + measurement scheme was well tolerated by patients and holds + considerable potential to investigate cardiac mechanics in + various diseases.}, + DOI = {10.1002/mrm.21363}, + Institution = {Institute for Biomedical Engineering, University and ETH + Zurich, Switzerland. rutz@biomed.ee.ethz.ch}, + Keywords = {Adult; Algorithms; Artificial Intelligence; Female; Heart, + physiopathology; Humans; Image Enhancement, methods; Image + Interpretation, Computer-Assisted, methods; Imaging, + Three-Dimensional, methods; Magnetic Resonance Imaging, + methods; Male; Movement; Myocardial Infarction, + pathology/physiopathology; Myocardium, pathology; Pattern + Recognition, Automated, methods; Reproducibility of + Results; Sensitivity and Specificity; Subtraction + Technique}, + Language = {eng}, + medline-pst = {ppublish}, + owner = {stoeckc}, + pmid = {18383307}, + timestamp = {2015.07.24}, + URL = {http://dx.doi.org/10.1002/mrm.21363} +} + +@Article{ rutz2009ehj, + Title = {Left ventricular dyssynchrony in patients with left bundle + branch block and patients after myocardial infarction: + integration of mechanics and viability by cardiac magnetic + resonance.}, + Author = {Rutz, Andrea K. and Manka, Robert and Kozerke, Sebastian + and Roas, Susanne and Boesiger, Peter and Schwitter, + Juerg}, + Journal = {Eur Heart J}, + Year = {2009}, + Month = {Sep}, + Number = {17}, + Pages = {2117--2127}, + Volume = {30}, + Abstract = {To quantify left ventricular (LV) dyssynchrony in patients + with left bundle branch block (LBBB) and in patients after + myocardial infarction (MI) applying an accelerated + three-dimensional (3D) tagging cardiac magnetic resonance + (CMR) technique, and to combine dyssynchrony information + with viability data obtained by late gadolinium enhancement + (LGE) CMR.Thirty-two patients (59 +/- 11 years) after first + MI (Pats(MI)), 10 patients (63 +/- 10 years) with LBBB + (ejection fraction < 40\%; Pats(LBBB<40)), 13 patients (63 + +/- 11) with LBBB (ejection fraction >or= 40\%; Pats(LBBB + >or=40 )), and 15 healthy controls (53 +/- 10 years) + underwent 3D tagging CMR and LGE imaging at 1.5 T. As a + measure of mechanical LV dyssynchrony, the standard + deviation of T(max) over the LV, the circumferential + uniformity ratio estimate (CURE) index, and a + segmental-based circumferential systolic dyssynchrony index + (SDI) were calculated. All three parameters detected + significantly increased circumferential dyssynchrony in + patients compared with controls. The CURE and SDI showed a + good correlation (r = 0.93, P < 0.0001) and detected most + severe dyssynchrony in Pats(LBBB<40) (P < 0.001 vs. + controls, P < 0.005 vs. Pats(MI)). Systolic dyssynchrony + index additionally allowed integration of localized + viability information to yield SDI(viable) which was + highest in Pats(LBBB<40).Dyssynchrony patterns in the LV + can be quantified globally and regionally by 3D tagging + CMR. Combination of viability and dyssynchrony information + allows for a comprehensive dyssynchrony quantification in + patients with LBBB or post-MI. Future studies are required + to test the value of the method to predict responsiveness + to resynchronization.}, + DOI = {10.1093/eurheartj/ehp212}, + Institution = {Institute for Biomedical Engineering, University and ETH + Zurich, Zurich, Switzerland.}, + Keywords = {Adult; Aged; Bundle-Branch Block, + etiology/pathology/physiopathology; Case-Control Studies; + Female; Humans; Imaging, Three-Dimensional; Magnetic + Resonance Angiography; Male; Middle Aged; Myocardial + Infarction, complications/pathology/physiopathology; + Observer Variation; Ventricular Dysfunction, Left, + etiology/pathology/physiopathology}, + Language = {eng}, + medline-pst = {ppublish}, + owner = {stoeckc}, + pii = {ehp212}, + pmid = {19477875}, + timestamp = {2015.07.24}, + URL = {http://dx.doi.org/10.1093/eurheartj/ehp212} +} + +@Article{ ryan-elimelech-96, + Author = {Ryan, J.N. and Elimelech, M.}, + code = {por18}, + Journal = {Colloid and Surfaces, A: Physicochemical and Engineering + aspecsts}, + Pages = {1-56}, + Title = {Colloid mobilization and transport in groundwater}, + Volume = {107}, + Year = {1996} +} + +###Article{ ryan-elimelech-96, + Author = {Ryan, J.N. and Elimelech, M.}, + code = {por18}, + Journal = {Colloid and Surfaces, A: Physicochemical and Engineering + aspecsts}, + Pages = {1-56}, + Title = {Colloid mobilization and transport in groundwater}, + Volume = {107}, + Year = {1996} +} + +@Article{ ryan1996jacc, + Title = {ACC/AHA guidelines for the management of patients with + acute myocardial infarctionA report of the American College + of cardiology/American Heart Association Task Force on + Practice Guidelines (Committee on Management of Acute + Myocardial Infarction)}, + Author = {Ryan, Thomas J. and Anderson, Jeffrey L. and Antman, + Elliott M. and Braniff, Blaine A. and Brooks, Neil H. and + Califf, Robert M. and Hillis, L. David and Hiratzka, Loren + F. and Rapaport, Elliott and Riegel, Barbara J. and + Russell, Richard O. and Smith, III ,Earl E. and Weaver, W. + Douglas and Ritchie, James L. and Cheitlin, Melvin D. and + Eagle, Kim A. and Gardner, Timothy J. and Garson, Jr. + ,Arthur and Gibbons, Raymond J. and Lewis, Richard P. and + O'Rourke, Robert A.}, + Journal = {Journal of the American College of Cardiology}, + Year = {1996}, + Number = {5}, + Pages = {1328-1419}, + Volume = {28}, + DOI = {10.1016/S0735-1097(96)00392-0}, + EPrint = {/data/Journals/JAC/22864/03920.pdf}, + File = {ryan96.pdf:ryan96.pdf:PDF}, + timestamp = {2015/09/13}, + URL = { + http://dx.doi.org/10.1016/S0735-1097(96)00392-0} +} + +@Article{ saad-schultz-86, + Author = {Saad, Y. and Schultz, M. H.}, + fjournal = {Society for Industrial and Applied Mathematics. Journal on + Scientific and Statistical Computing}, + Journal = {SIAM J. Sci. Statist. Comput.}, + Number = {3}, + Pages = {856--869}, + Title = {G{MRES}: a generalized minimal residual algorithm for + solving nonsymmetric linear systems}, + Volume = {7}, + Year = {1986} +} + +###Article{ saad-schultz-86, + Author = {Saad, Y. and Schultz, M. H.}, + fjournal = {Society for Industrial and Applied Mathematics. Journal on + Scientific and Statistical Computing}, + Journal = {SIAM J. Sci. Statist. Comput.}, + Number = {3}, + Pages = {856--869}, + Title = {G{MRES}: a generalized minimal residual algorithm for + solving nonsymmetric linear systems}, + Volume = {7}, + Year = {1986} +} + +@Book{ saad_iterative_2003, + Location = {{Philadelphia}}, + Title = {Iterative Methods for Sparse Linear Systems}, + Edition = {2nd ed}, + ISBN = {978-0-89871-534-7}, + PageTotal = {528}, + Publisher = {{SIAM}}, + Date = {2003}, + Author = {Saad, Y.} +} + +@Article{ sachs1994mrm, + Author = {Sachs, Todd S. and Meyer, Craig H. and Hu, Bob S. and + Kohli, Jim and Nishimura, Dwight G. and Macovski, Albert}, + Title = {Real-time motion detection in spiral MRI using + navigators}, + Journal = {Magnetic Resonance in Medicine}, + Volume = {32}, + Number = {5}, + Publisher = {Wiley Subscription Services, Inc., A Wiley Company}, + ISSN = {1522-2594}, + Pages = {639--645}, + Keywords = {Motion artifacts, navigators, MRI}, + Year = {1994} +} + +@Article{ saint-venant-71, + Author = {de Saint-Venant, A.J.C.}, + Journal = {C. R. Acad. Sc. Paris}, + Pages = {147--154}, + Title = {Th{\'e}orie du mouvement non-permanent des eaux, avec + application aux crues des rivi{\`e}res et {\`a} + l'introduction des mar{\'e}es dans leur lit}, + Volume = {73}, + Year = {1871} +} + +###Article{ saint-venant-71, + Author = {de Saint-Venant, A.J.C.}, + Journal = {C. R. Acad. Sc. Paris}, + Pages = {147--154}, + Title = {Th{\'e}orie du mouvement non-permanent des eaux, avec + application aux crues des rivi{\`e}res et {\`a} + l'introduction des mar{\'e}es dans leur lit}, + Volume = {73}, + Year = {1871} +} + +@Article{ saintemarie2006, + Title = "Modeling and estimation of the cardiac electromechanical + activity", + Journal = "Computers \& Structures", + Volume = "84", + Number = "28", + Pages = "1743 - 1759", + Year = "2006", + Note = "", + ISSN = "0045-7949", + DOI = "10.1016/j.compstruc.2006.05.003", + Author = "J. Sainte-Marie and D. Chapelle and R. Cimrman and M. + Sorine", + Keywords = "Computer-aided diagnosis" +} + +@Article{ salmon-thiriet-gerbeau-02, + Author = {Salmon, S. and Thiriet, M. and Gerbeau, J-F.}, + Journal = {ESAIM-Proceeding}, + Pages = {140-145}, + Title = {Numerical simulations of blood flows in arteries for + interventional medicines}, + Volume = {12}, + Year = {2002} +} + +###Article{ salmon-thiriet-gerbeau-02, + Author = {Salmon, S. and Thiriet, M. and Gerbeau, J-F.}, + Journal = {ESAIM-Proceeding}, + Pages = {140-145}, + Title = {Numerical simulations of blood flows in arteries for + interventional medicines}, + Volume = {12}, + Year = {2002} +} + +@Article{ salmon-thiriet-gerbeau-03, + Author = {Salmon, S. and Thiriet, M. and Gerbeau, J-F.}, + Journal = {Math. Model. Num. Anal.}, + Number = 4, + Pages = {631-648}, + Title = {Medical image - based computational model of pulsatile + flow in saccular aneurisms }, + Volume = 37, + Year = 2003 +} + +###Article{ salmon-thiriet-gerbeau-03, + Author = {Salmon, S. and Thiriet, M. and Gerbeau, J-F.}, + Journal = {Math. Model. Num. Anal.}, + Number = 4, + Pages = {631-648}, + Title = {Medical image - based computational model of pulsatile + flow in saccular aneurisms }, + Volume = 37, + Year = 2003 +} + +@InProceedings{ salsac-05, + Author = {Salsac, A.-V. and Fern\'andez, M.A. and Chomaz, J.M. and + Le Tallec, P.}, + BookTitle = {Bulletin of the American Physical Society}, + Title = {Effects of the flexibility of the arterial wall on the + wall shear stresses and wall tension in abdominal aortic + aneurysms}, + Year = {2005} +} + +###InProceedings{ salsac-05, + Author = {Salsac, A.-V. and Fern\'andez, M.A. and Chomaz, J.M. and + Le Tallec, P.}, + BookTitle = {Bulletin of the American Physical Society}, + Title = {Effects of the flexibility of the arterial wall on the + wall shear stresses and wall tension in abdominal aortic + aneurysms}, + Year = {2005} +} + +@Article{ salsac-06, + Author = {Salsac, A.-V. and Sparks, S.R. and Chomaz, J.M. and + Lasheras, J.C.}, + Journal = { J. Fluid Mech.}, + Pages = {19-51}, + Title = { Evolution of the wall shear stresses during the + progressive enlargement of symmetric abdominal aortic + aneurysms}, + Volume = {550}, + Year = {2006} +} + +###Article{ salsac-06, + Author = {Salsac, A.-V. and Sparks, S.R. and Chomaz, J.M. and + Lasheras, J.C.}, + Journal = { J. Fluid Mech.}, + Pages = {19-51}, + Title = { Evolution of the wall shear stresses during the + progressive enlargement of symmetric abdominal aortic + aneurysms}, + Volume = {550}, + Year = {2006} +} + +@Article{ salvucci-schiavone-craiem-barra-07, + Author = {Salvucci, F. and Schiavone, J. and Craiem, D. and Barra, + J.G.}, + Journal = {Journal of Physics: Conference Series}, + Volume = {90}, + Title = {Arterial wall mechanics as a function of heart rate: role + of vascular smooth muscle}, + Year = {2007} +} + +###Article{ salvucci-schiavone-craiem-barra-07, + Author = {Salvucci, F. and Schiavone, J. and Craiem, D. and Barra, + J.G.}, + Journal = {Journal of Physics: Conference Series}, + Volume = {90}, + Title = {Arterial wall mechanics as a function of heart rate: role + of vascular smooth muscle}, + Year = {2007} +} + +@Article{ samsel-perelson-82, + Annote = {red blood cell}, + Author = {Samsel, R.W. and Perelson, A.S.}, + code = {cel11}, + Journal = {Biophys. J.}, + Pages = {493--514}, + Title = {Kinetics of rouleaux formation. {I. A} mass action + approach with geometric features}, + Volume = {37}, + Year = {1982} +} + +###Article{ samsel-perelson-82, + Annote = {red blood cell}, + Author = {Samsel, R.W. and Perelson, A.S.}, + code = {cel11}, + Journal = {Biophys. J.}, + Pages = {493--514}, + Title = {Kinetics of rouleaux formation. {I. A} mass action + approach with geometric features}, + Volume = {37}, + Year = {1982} +} + +@Article{ samsel-perelson-84, + Annote = {red blood cell}, + Author = {Samsel, R.W. and Perelson, A.S.}, + code = {cel12}, + Journal = {Biophys. J.}, + Pages = {805--824}, + Title = {Kinetics of rouleaux formation. {II. Reversible + reactions}}, + Volume = {45}, + Year = {1984} +} + +###Article{ samsel-perelson-84, + Annote = {red blood cell}, + Author = {Samsel, R.W. and Perelson, A.S.}, + code = {cel12}, + Journal = {Biophys. J.}, + Pages = {805--824}, + Title = {Kinetics of rouleaux formation. {II. Reversible + reactions}}, + Volume = {45}, + Year = {1984} +} + +@InBook{ samsel-perelson-84b, + Annote = {red blood cell}, + Author = {Samsel, R.W. and Perelson, A.S.}, + code = {cel13}, + Pages = {805--824}, + Publisher = {Elsevier Sciences Pub.}, + Title = {Kinetics of red blood cell aggregation: an example of + geometric polymerization}, + Year = {1984} +} + +###InBook{ samsel-perelson-84b, + Annote = {red blood cell}, + Author = {Samsel, R.W. and Perelson, A.S.}, + code = {cel13}, + Pages = {805--824}, + Publisher = {Elsevier Sciences Pub.}, + Title = {Kinetics of red blood cell aggregation: an example of + geometric polymerization}, + Year = {1984} +} + +@Article{ sanchez-palencia-68, + Annote = {mhd, existence}, + Author = {Sanchez-Palancia, E.}, + code = {mhd2}, + Journal = {Journal de M{\'e}canique}, + Month = {Septembre}, + Number = {3}, + Pages = {405-426}, + Title = {Existence des solutions de certains probl{\`e}mes aux + limites en magn{\'e}tohydrodynamique}, + Volume = {7}, + Year = {1968} +} + +###Article{ sanchez-palencia-68, + Annote = {mhd, existence}, + Author = {Sanchez-Palancia, E.}, + code = {mhd2}, + Journal = {Journal de M{\'e}canique}, + Month = {Septembre}, + Number = {3}, + Pages = {405-426}, + Title = {Existence des solutions de certains probl{\`e}mes aux + limites en magn{\'e}tohydrodynamique}, + Volume = {7}, + Year = {1968} +} + +@Article{ sanchez-palencia-69, + Annote = {mhd, existence}, + Author = {Sanchez-Palancia, E.}, + code = {mhd3}, + Journal = {Journal de M{\'e}canique}, + Number = {4}, + Pages = {509-541}, + Title = {Quelques r{\'e}sultats d'existence et d'unicit{\'e} pour + des {\'e}coulements magn{\'e}tohydrodynamiques non + stationnaires}, + Volume = {8}, + Year = {1969} +} + +###Article{ sanchez-palencia-69, + Annote = {mhd, existence}, + Author = {Sanchez-Palancia, E.}, + code = {mhd3}, + Journal = {Journal de M{\'e}canique}, + Number = {4}, + Pages = {509-541}, + Title = {Quelques r{\'e}sultats d'existence et d'unicit{\'e} pour + des {\'e}coulements magn{\'e}tohydrodynamiques non + stationnaires}, + Volume = {8}, + Year = {1969} +} + +@Article{ sanchez1996, + Title = {Ventricular myoarchitecture in tetralogy of Fallot.}, + Author = {Sanchez-Quintana, D. and Anderson, R. H. and Ho, S. Y.}, + Journal = {Heart}, + Volume = {76}, + Number = {3}, + Pages = {280--286}, + Year = {1996}, + Publisher = {BMJ Publishing Group Ltd and British Cardiovascular + Society} +} + +@InProceedings{ sands2008, + Title = {Virtual sectioning of cardiac tissue relative to fiber + orientation}, + Author = {Sands, G. B. and Smaill, B. H. and LeGrice, I. J.}, + BookTitle = {Engineering in Medicine and Biology Society, 2008. EMBS + 2008. 30th Annual International Conference of the IEEE}, + Pages = {226--229}, + Year = {2008} +} + +@Article{ sankaran_fast_2015, + Title = {Fast {{Computation}} of {{Hemodynamic Sensitivity}} to + {{Lumen Segmentation Uncertainty}}}, + Volume = {34}, + ISSN = {0278-0062}, + DOI = {10.1109/TMI.2015.2445777}, + Abstract = {Patient-specific blood flow modeling combining imaging + data and computational fluid dynamics can aid in the + assessment of coronary artery disease. Accurate coronary + segmentation and realistic physiologic modeling of boundary + conditions are important steps to ensure a high diagnostic + performance. Segmentation of the coronary arteries can be + constructed by a combination of automated algorithms with + human review and editing. However, blood pressure and flow + are not impacted equally by different local sections of the + coronary artery tree. Focusing human review and editing + towards regions that will most affect the subsequent + simulations can significantly accelerate the review + process. We define geometric sensitivity as the standard + deviation in hemodynamics-derived metrics due to + uncertainty in lumen segmentation. We develop a machine + learning framework for estimating the geometric sensitivity + in real time. Features used include geometric and clinical + variables, and reduced-order models. We develop an + anisotropic kernel regression method for assessment of + lumen narrowing score, which is used as a feature in the + machine learning algorithm. A multi-resolution sensitivity + algorithm is introduced to hierarchically refine regions of + high sensitivity so that we can quantify sensitivities to a + desired spatial resolution. We show that the mean absolute + error of the machine learning algorithm compared to 3D + simulations is less than 0.01. We further demonstrate that + sensitivity is not predicted simply by anatomic reduction + but also encodes information about hemodynamics which in + turn depends on downstream boundary conditions. This + sensitivity approach can be extended to other systems such + as cerebral flow, electro-mechanical simulations, etc.}, + Number = {12}, + JournalTitle = {IEEE Transactions on Medical Imaging}, + Date = {2015-12}, + Pages = {2562-2571}, + Author = {Sankaran, S. and Grady, L. and Taylor, C. A.} +} + +###Article{ sankaran_fast_2015, + Title = {Fast {{Computation}} of {{Hemodynamic Sensitivity}} to + {{Lumen Segmentation Uncertainty}}}, + Volume = {34}, + ISSN = {0278-0062}, + DOI = {10.1109/TMI.2015.2445777}, + Abstract = {Patient-specific blood flow modeling combining imaging + data and computational fluid dynamics can aid in the + assessment of coronary artery disease. Accurate coronary + segmentation and realistic physiologic modeling of boundary + conditions are important steps to ensure a high diagnostic + performance. Segmentation of the coronary arteries can be + constructed by a combination of automated algorithms with + human review and editing. However, blood pressure and flow + are not impacted equally by different local sections of the + coronary artery tree. Focusing human review and editing + towards regions that will most affect the subsequent + simulations can significantly accelerate the review + process. We define geometric sensitivity as the standard + deviation in hemodynamics-derived metrics due to + uncertainty in lumen segmentation. We develop a machine + learning framework for estimating the geometric sensitivity + in real time. Features used include geometric and clinical + variables, and reduced-order models. We develop an + anisotropic kernel regression method for assessment of + lumen narrowing score, which is used as a feature in the + machine learning algorithm. A multi-resolution sensitivity + algorithm is introduced to hierarchically refine regions of + high sensitivity so that we can quantify sensitivities to a + desired spatial resolution. We show that the mean absolute + error of the machine learning algorithm compared to 3D + simulations is less than 0.01. We further demonstrate that + sensitivity is not predicted simply by anatomic reduction + but also encodes information about hemodynamics which in + turn depends on downstream boundary conditions. This + sensitivity approach can be extended to other systems such + as cerebral flow, electro-mechanical simulations, etc.}, + Number = {12}, + JournalTitle = {IEEE Transactions on Medical Imaging}, + Year = {2015-12}, + Pages = {2562-2571}, + Author = {Sankaran, S. and Grady, L. and Taylor, C. A.} +} + +@Article{ sankaran_impact_2015, + Title = {Impact of Geometric Uncertainty on Hemodynamic Simulations + Using Machine Learning}, + Volume = {297}, + JournalTitle = {Computer Methods in Applied Mechanics and Engineering}, + Date = {2015}, + Pages = {167--190}, + Author = {Sankaran, Sethuraman and Grady, Leo and Taylor, Charles + A.} +} + +###Article{ sankaran_impact_2015, + Title = {Impact of Geometric Uncertainty on Hemodynamic Simulations + Using Machine Learning}, + Volume = {297}, + JournalTitle = {Computer Methods in Applied Mechanics and Engineering}, + Year = {2015}, + Pages = {167--190}, + Author = {Sankaran, Sethuraman and Grady, Leo and Taylor, Charles + A.} +} + +@Article{ sankaran_stochastic_2011, + Title = {A Stochastic Collocation Method for Uncertainty + Quantification and Propagation in Cardiovascular + Simulations}, + Volume = {133}, + Number = {3}, + JournalTitle = {Journal of biomechanical engineering}, + Date = {2011}, + Pages = {031001}, + Author = {Sankaran, Sethuraman and Marsden, Alison L.} +} + +###Article{ sankaran_stochastic_2011, + Title = {A Stochastic Collocation Method for Uncertainty + Quantification and Propagation in Cardiovascular + Simulations}, + Volume = {133}, + Number = {3}, + JournalTitle = {Journal of biomechanical engineering}, + Year = {2011}, + Pages = {031001}, + Author = {Sankaran, Sethuraman and Marsden, Alison L.} +} + +@Article{ sankaran_uncertainty_2016, + Title = {Uncertainty Quantification in Coronary Blood Flow + Simulations: Impact of Geometry, Boundary Conditions and + Blood Viscosity}, + Volume = {49}, + ShortTitle = {Uncertainty Quantification in Coronary Blood Flow + Simulations}, + Number = {12}, + JournalTitle = {Journal of biomechanics}, + Date = {2016}, + Pages = {2540--2547}, + Author = {Sankaran, Sethuraman and Kim, Hyun Jin and Choi, Gilwoo + and Taylor, Charles A.} +} + +###Article{ sankaran_uncertainty_2016, + Title = {Uncertainty Quantification in Coronary Blood Flow + Simulations: Impact of Geometry, Boundary Conditions and + Blood Viscosity}, + Volume = {49}, + ShortTitle = {Uncertainty Quantification in Coronary Blood Flow + Simulations}, + Number = {12}, + JournalTitle = {Journal of biomechanics}, + Year = {2016}, + Pages = {2540--2547}, + Author = {Sankaran, Sethuraman and Kim, Hyun Jin and Choi, Gilwoo + and Taylor, Charles A.} +} + +@Book{ saramito, + Author = {Saramito, B.}, + Publisher = {Masson}, + Title = {Stabilit{\'e} d'un plasma~: mod{\'e}lisation + math{\'e}matique et simulation num{\'e}rique}, + Year = {1994} +} + +###Book{ saramito, + Author = {Saramito, B.}, + Publisher = {Masson}, + Title = {Stabilit{\'e} d'un plasma~: mod{\'e}lisation + math{\'e}matique et simulation num{\'e}rique}, + Year = {1994} +} + +@Article{ sassara-achili-bianchi-2004, + Author = {Sassara, M. and Achilli, A. and Bianchi, S. and et al.}, + Journal = {PACE}, + Title = {Long-term effectiveness of dual site left ventricular + cardiac resynchronization therapy in a patient with + congestive heart failure}, + Volume = {27}, + Year = {2004} +} + +###Article{ sassara-achili-bianchi-2004, + Author = {Sassara, M. and Achilli, A. and Bianchi, S. and et al.}, + Journal = {PACE}, + Title = {Long-term effectiveness of dual site left ventricular + cardiac resynchronization therapy in a patient with + congestive heart failure}, + Volume = {27}, + Year = {2004} +} + +###Article{ sassara-achili-bianchi-2004, + Author = {Sassara, M. and Achilli, A. and Bianchi, S. and et al.}, + Journal = {PACE}, + Title = {Long-term effectiveness of dual site left ventricular + cardiac resynchronization therapy in a patient with + congestive heart failure}, + Volume = {27}, + Year = {2004} +} + +###Article{ sassara-achili-bianchi-2004, + Author = {Sassara, M. and Achilli, A. and Bianchi, S. and et al.}, + Journal = {PACE}, + Title = {Long-term effectiveness of dual site left ventricular + cardiac resynchronization therapy in a patient with + congestive heart failure}, + Volume = {27}, + Year = {2004} +} + +@Article{ savadjiev2012heart, + Title = {Heart wall myofibers are arranged in minimal surfaces to + optimize organ function}, + Author = {Savadjiev, Peter and Strijkers, Gustav J and Bakermans, + Adrianus J and Piuze, Emmanuel and Zucker, Steven W and + Siddiqi, Kaleem}, + Journal = {Proceedings of the National Academy of Sciences}, + Volume = {109}, + Number = {24}, + Pages = {9248--9253}, + Year = {2012}, + Publisher = {National Acad Sciences} +} + +@Article{ schriefl-etal-11, + Title = {Determination of the layer-specific distributed collagen + fibre orientations in human thoracic and abdominal aortas + and common iliac arteries}, + Author = {Schriefl, Andreas J and Zeindlinger, Georg and Pierce, + David M and Regitnig, Peter and Holzapfel, Gerhard A}, + Journal = {Journal of the Royal Society Interface}, + Volume = {9}, + Number = {71}, + Pages = {1275--1286}, + Year = {2012}, + Publisher = {The Royal Society} +} + +@Article{ scollan1998, + Author = {Scollan, D. F. and Holmes, A. and Winslow, R. and Forder, + J.}, + Title = {Histological validation of myocardial microstructure + obtained from diffusion tensor magnetic resonance imaging}, + Volume = {275}, + Number = {6}, + Pages = {H2308-H2318}, + Year = {1998}, + Abstract = {Diffusion tensor magnetic resonance imaging (MRI) is a + possible new means of elucidating the anatomic structure of + the myocardium. It enjoys several advantages over + traditional histological approaches, including the ability + to rapidly measure fiber organization in isolated, + perfused, arrested hearts, thereby avoiding fixation and + sectioning of artifacts. However, quantitative validation + of this MRI method has been lacking. Here, fiber + orientations estimated in the same locations in the same + heart using both diffusion tensor MRI and histology are + compared in a total of two perfused rabbit hearts. Fiber + orientations were statistically similar for both methods + and differed on average by 12° at any single location. + This is similar to the 10° uncertainty in fiber + orientation achieved with histology. In addition, imaging + studies performed in a total of seven hearts support a + level of organization beyond the myofiber, the recently + described laminar organization of the ventricular + myocardium.}, + Journal = {American Journal of Physiology - Heart and Circulatory + Physiology} +} + +@Article{ scollan1998histological, + Title = {Histological validation of myocardial microstructure + obtained from diffusion tensor magnetic resonance imaging}, + Author = {Scollan, D.F. and Holmes, A. and Winslow, R. and Forder, + J.}, + Journal = {American Journal of Physiology-Heart and Circulatory + Physiology}, + Volume = {275}, + Number = {6}, + Pages = {H2308--H2318}, + Year = {1998}, + Publisher = {Am Physiological Soc} +} + +@Article{ scott-zhang-90, + Author = {Scott, L.~R. and Zhang, S.}, + Title = {Finite element interpolation of nonsmooth functions + satisfying boundary conditions}, + Journal = {Math. Comp.}, + fjournal = {Mathematics of Computation}, + Volume = {54}, + Year = {1990}, + Number = {190}, + Pages = {483--493} +} + +###Article{ scott-zhang-90, + Author = {Scott, L.~R. and Zhang, S.}, + Title = {Finite element interpolation of nonsmooth functions + satisfying boundary conditions}, + Journal = {Math. Comp.}, + fjournal = {Mathematics of Computation}, + Volume = {54}, + Year = {1990}, + Number = {190}, + Pages = {483--493} +} + +@Article{ scott1985norm, + Title = {Norm estimates for a maximal right inverse of the + divergence operator in spaces of piecewise polynomials}, + Author = {Scott, LR and Vogelius, M}, + Journal = {RAIRO-Mod{\'e}lisation math{\'e}matique et analyse + num{\'e}rique}, + Volume = {19}, + Number = {1}, + Pages = {111--143}, + Year = {1985} +} + +###Article{ scott1985norm, + Title = {Norm estimates for a maximal right inverse of the + divergence operator in spaces of piecewise polynomials}, + Author = {Scott, LR and Vogelius, M}, + Journal = {RAIRO-Mod{\'e}lisation math{\'e}matique et analyse + num{\'e}rique}, + Volume = {19}, + Number = {1}, + Pages = {111--143}, + Year = {1985} +} + +@Article{ segal2010precond, + Title = {Preconditioners for incompressible Navier-Stokes solvers}, + Author = {Segal, A and ur Rehman, M and Vuik, C}, + Journal = {Numerical Mathematics: Theory, Methods and Applications}, + Volume = {3}, + Number = {3}, + Pages = {245--275}, + Year = {2010} +} + +@Article{ segatz-droste-94, + Annote = {mhd, aluminium, stability}, + Author = {Segatz, M. and Droste, C.}, + code = {mhd33}, + Journal = {Light Metals}, + Pages = {313-322}, + Title = {Analysis of magnetohydrodynamic instabilities in aluminium + reduction cells}, + Year = {1994} +} + +###Article{ segatz-droste-94, + Annote = {mhd, aluminium, stability}, + Author = {Segatz, M. and Droste, C.}, + code = {mhd33}, + Journal = {Light Metals}, + Pages = {313-322}, + Title = {Analysis of magnetohydrodynamic instabilities in aluminium + reduction cells}, + Year = {1994} +} + +@Article{ segers2008nature, + Title = {Stem-cell therapy for cardiac disease}, + Author = {Segers, Vincent and Lee, Richard}, + Journal = {Nature}, + Year = {2008}, + Month = {Feb}, + Number = {7181}, + Pages = {937--942}, + Volume = {451}, + DOI = {10.1038/nature06800}, + File = {:Segers2008Nature.pdf:PDF}, + ISSN = {1476-4687}, + Publisher = {Nature Publishing Group}, + URL = {http://dx.doi.org/10.1038/nature06800} +} + +@Article{ segment, + Title = {Design and validation of Segment - freely available + software for cardiovascular image analysis}, + Author = {Heiberg, Einar and Sjogren, Jane and Ugander, Martin and + Carlsson, Marcus and Engblom, Henrik and Arheden, Hakan}, + Journal = {BMC Medical Imaging}, + Year = {2010}, + Number = {1}, + Pages = {1}, + Volume = {10}, + Abstract = {BACKGROUND:Commercially available software for + cardiovascular image analysis often has limited + functionality and frequently lacks the careful validation + that is required for clinical studies. We have already + implemented a cardiovascular image analysis software + package and released it as freeware for the research + community. However, it was distributed as a stand-alone + application and other researchers could not extend it by + writing their own custom image analysis algorithms. We + believe that the work required to make a clinically + applicable prototype can be reduced by making the software + extensible, so that researchers can develop their own + modules or improvements. Such an initiative might then + serve as a bridge between image analysis research and + cardiovascular research. The aim of this article is + therefore to present the design and validation of a + cardiovascular image analysis software package (Segment) + and to announce its release in a source code + format.RESULTS:Segment can be used for image analysis in + magnetic resonance imaging (MRI), computed tomography (CT), + single photon emission computed tomography (SPECT) and + positron emission tomography (PET). Some of its main + features include loading of DICOM images from all major + scanner vendors, simultaneous display of multiple image + stacks and plane intersections, automated segmentation of + the left ventricle, quantification of MRI flow, tools for + manual and general object segmentation, quantitative + regional wall motion analysis, myocardial viability + analysis and image fusion tools. Here we present an + overview of the validation results and validation + procedures for the functionality of the software. We + describe a technique to ensure continued accuracy and + validity of the software by implementing and using a test + script that tests the functionality of the software and + validates the output. The software has been made freely + available for research purposes in a source code format on + the project home page http://segment.heiberg.se + webcite.CONCLUSIONS: Segment is a well-validated + comprehensive software package for cardiovascular image + analysis. It is freely available for research purposes + provided that relevant original research publications + related to the software are cited.}, + DOI = {10.1186/1471-2342-10-1}, + ISSN = {1471-2342}, + pubmedid = {20064248}, + timestamp = {2015/09/23}, + URL = {http://www.biomedcentral.com/1471-2342/10/1} +} + +@Article{ sele-77, + Author = {Sele, T.}, + Journal = {Light Metal}, + Pages = {7-24}, + Title = {Instabilities of the metal surface in electrolytic cells}, + Year = {1977} +} + +###Article{ sele-77, + Author = {Sele, T.}, + Journal = {Light Metal}, + Pages = {7-24}, + Title = {Instabilities of the metal surface in electrolytic cells}, + Year = {1977} +} + +@TechReport{ sermange-81, + Annote = {mhd, stability, plasma}, + Author = {Sermange, M.}, + code = {mhd26}, + Institution = {INRIA RR-92}, + Title = {Mod{\'e}lisation de la stabilit{\'e} magnetohydrodynamique + bidimensionnelle par une {\'e}quation diff{\'e}rentielle + g{\'e}n{\'e}ralis{\'e}e}, + Year = {1981} +} + +###TechReport{ sermange-81, + Annote = {mhd, stability, plasma}, + Author = {Sermange, M.}, + code = {mhd26}, + Institution = {INRIA RR-92}, + Title = {Mod{\'e}lisation de la stabilit{\'e} magnetohydrodynamique + bidimensionnelle par une {\'e}quation diff{\'e}rentielle + g{\'e}n{\'e}ralis{\'e}e}, + Year = {1981} +} + +@Article{ sermange-temam-83, + Annote = {mhd, existence, long time}, + Author = {Sermange, M. and Temam, R.}, + code = {mhd1}, + Journal = {Comm. Pure Appl. Math.}, + Pages = {635-664}, + Title = {Some mathematical questions related to the {MHD} + equations}, + Volume = {XXXVI}, + Year = {1983} +} + +###Article{ sermange-temam-83, + Annote = {mhd, existence, long time}, + Author = {Sermange, M. and Temam, R.}, + code = {mhd1}, + Journal = {Comm. Pure Appl. Math.}, + Pages = {635-664}, + Title = {Some mathematical questions related to the {MHD} + equations}, + Volume = {XXXVI}, + Year = {1983} +} + +@Article{ sermesant-coudiere-03, + Author = {Sermesant, M. and Coudi{\`e}re, Y. and Delingette, H. and + Ayache, N. and Sainte-Marie, J. and Chapelle, D. and + Cl{\'e}ment, F. and Sorine, M.}, + Journal = {ESAIM-Proceedings}, + Pages = {153-161}, + Title = {Progress towards model-based estimation of the cardiac + electromechanical activity from ECG signals and 4D images}, + Volume = {12}, + Year = {2003} +} + +###Article{ sermesant-coudiere-03, + Author = {Sermesant, M. and Coudi{\`e}re, Y. and Delingette, H. and + Ayache, N. and Sainte-Marie, J. and Chapelle, D. and + Cl{\'e}ment, F. and Sorine, M.}, + Journal = {ESAIM-Proceedings}, + Pages = {153-161}, + Title = {Progress towards model-based estimation of the cardiac + electromechanical activity from ECG signals and 4D images}, + Volume = {12}, + Year = {2003} +} + +@Article{ sermesant2012crt, + Title = {Patient-specific electromechanical models of the heart for + the prediction of pacing acute effects in CRT: a + preliminary clinical validation}, + Author = {Sermesant, Maxime and Chabiniok, Radomir and + Chinchapatnam, Phani and Mansi, Tommaso and Billet, + Florence and Moireau, Philippe and Peyrat, Jean-Marc and + Wong, K and Relan, Jatin and Rhode, Kawal and others}, + Journal = {Medical image analysis}, + Volume = {16}, + Number = {1}, + Pages = {201--215}, + Year = {2012}, + Publisher = {Elsevier} +} + +@Article{ sermesant2012media, + Title = {Patient-specific electromechanical models of the heart for + the prediction of pacing acute effects in {CRT}: A + preliminary clinical validation}, + Author = {Sermesant, M. and Chabiniok, R. and Chinchapatnam, P. and + Mansi, T. and Billet, F. and Moireau, P. and Peyrat, J.M. + and Wong, K. and Relan, J. and Rhode, K. and Ginks, M. and + Lambiase, P. and Delingette, H. and Sorine, M. and Rinaldi, + C.A. and Chapelle, D. and Razavi, R. and Ayache, N.}, + Journal = {Medical Image Analysis}, + Year = {2012}, + Month = jan, + Number = {1}, + Pages = {201--215}, + Volume = {16}, + DOI = {10.1016/j.media.2011.07.003}, + File = {Sermesant2012.pdf:/home/hoermann/.zotero/zotero/krpbc0h6.default/zotero/storage/Z7FKWGTJ/Sermesant2012.pdf:application/pdf}, + ISSN = {13618415}, + Keywords = {{CRT}}, + Language = {en}, + ShortTitle = {Patient-specific electromechanical models of the heart for + the prediction of pacing acute effects in {CRT}}, + URL = {http://linkinghub.elsevier.com/retrieve/pii/S1361841511001009}, + URLDate = {2014-11-27} +} + +@Book{ serre-96, + Author = {Serre, D.}, + Publisher = {Diderot Editeur, Paris}, + Title = {Syst{\`e}mes de lois de conservation. {I \& II}}, + Year = {1996} +} + +###Book{ serre-96, + Author = {Serre, D.}, + Publisher = {Diderot Editeur, Paris}, + Title = {Syst{\`e}mes de lois de conservation. {I \& II}}, + Year = {1996} +} + +@Article{ shi-lawford-hose-11, + Author = {Shi, Y. and Lawford, P. and Hose, R.}, + Journal = {Biomed Eng Online}, + Pages = {33}, + Title = {Review of zero-D and 1-D models of blood flow in the + cardiovascular system}, + Volume = {10}, + Year = {2011} +} + +###Article{ shi-lawford-hose-11, + Author = {Shi, Y. and Lawford, P. and Hose, R.}, + Journal = {Biomed Eng Online}, + Pages = {33}, + Title = {Review of zero-D and 1-D models of blood flow in the + cardiovascular system}, + Volume = {10}, + Year = {2011} +} + +@Article{ shi_patient-specific_2019, + langid = {english}, + Title = {Patient-Specific Non-Invasive Estimation of Pressure + Gradient across Aortic Coarctation Using Magnetic Resonance + Imaging}, + ISSN = {09145087}, + URL = {https://linkinghub.elsevier.com/retrieve/pii/S0914508718303691}, + DOI = {10.1016/j.jjcc.2018.12.016}, + JournalTitle = {Journal of Cardiology}, + URLDate = {2019-02-04}, + Year = {2019-01}, + Author = {Shi, Yubing and Valverde, Israel and Lawford, Patricia V. + and Beerbaum, Philipp and Hose, D. Rodney} +} + +@Article{ si2008adaptive, + Title = {Adaptive tetrahedral mesh generation by constrained + Delaunay refinement}, + Author = {Si, Hang}, + Journal = {International Journal for Numerical Methods in + Engineering}, + Volume = {75}, + Number = {7}, + Pages = {856--880}, + Year = {2008}, + Publisher = {Wiley Online Library} +} + +@Article{ simo-armero-taylor-95, + Author = {Simo, J.C. and Armero, F. and Taylor, C.A.}, + Journal = {Int. Jour. Num. Meth. Eng.}, + Pages = {1475-1506}, + Title = {Stable and time-dissipative finite element methods for the + incompressible {Navier-Stokes} equations in advection + dominated flows}, + Volume = {38}, + Year = {1995} +} + +###Article{ simo-armero-taylor-95, + Author = {Simo, J.C. and Armero, F. and Taylor, C.A.}, + Journal = {Int. Jour. Num. Meth. Eng.}, + Pages = {1475-1506}, + Title = {Stable and time-dissipative finite element methods for the + incompressible {Navier-Stokes} equations in advection + dominated flows}, + Volume = {38}, + Year = {1995} +} + +@Article{ simo-fox-rifai-89, + Author = {Simo, J.C and Fox, D.D and Rifai, M.S}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Pages = {267-304}, + Title = {On a stress resultant geometrically exact shell model, + {Part I} : Formulation and optimal parametrization}, + Volume = {72}, + Year = {1989} +} + +###Article{ simo-fox-rifai-89, + Author = {Simo, J.C and Fox, D.D and Rifai, M.S}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Pages = {267-304}, + Title = {On a stress resultant geometrically exact shell model, + {Part I} : Formulation and optimal parametrization}, + Volume = {72}, + Year = {1989} +} + +@Book{ simon-06, + Title = {{Optimal state estimation: Kalman, H infinity, and + nonlinear approaches}}, + Author = {Simon, D.}, + ISBN = {0470045337}, + Year = {2006}, + Publisher = {Wiley-Interscience} +} + +###Book{ simon-06, + Title = {{Optimal state estimation: Kalman, H infinity, and + nonlinear approaches}}, + Author = {Simon, D.}, + ISBN = {0470045337}, + Year = {2006}, + Publisher = {Wiley-Interscience} +} + +@Unpublished{ simon-09, + Author = {Simon, D.}, + Note = {IET Control Theory \& Applications, accepted for + publication}, + Title = {Kalman Filtering with State Constraints: A Survey of + Linear and Nonlinear Algorithms}, + Year = {2009} +} + +###Unpublished{ simon-09, + Author = {Simon, D.}, + Note = {IET Control Theory \& Applications, accepted for + publication}, + Title = {Kalman Filtering with State Constraints: A Survey of + Linear and Nonlinear Algorithms}, + Year = {2009} +} + +@Article{ simoons1986jacc, + Title = {Early thrombolysis in acute myocardial infarction: + Limitation of infarct size and improved survival}, + Author = {Simoons, Maarten L. and Serruys, Patrick W. and van den + Brand, Marcel and Res, Jan and Verheugt, Freek W.A. and + Krauss, X. Hanno and Remme, Willem J. and Bär, Frits and + Zwaan, Chris de and Laarse, Arnoud van der and Vermeer, + Frank and Lubsen, Jacobus}, + Journal = {Journal of the American College of Cardiology}, + Year = {1986}, + Number = {4}, + Pages = {717-728}, + Volume = {7}, + DOI = {10.1016/S0735-1097(86)80329-1}, + EPrint = {/data/Journals/JAC/22724/03291.pdf}, + File = {simoons86.pdf:simoons86.pdf:PDF}, + timestamp = {2015/09/13}, + URL = { + http://dx.doi.org/10.1016/S0735-1097(86)80329-1} +} + +@Article{ singh-2002, + Author = {Balbir Singh}, + Journal = {Indian Pacing Electrophysioly Journal}, + Title = {Biventricular pacing in congestive heart failure}, + Volume = {2}, + Year = {2002} +} + +###Article{ singh-2002, + Author = {Balbir Singh}, + Journal = {Indian Pacing Electrophysioly Journal}, + Title = {Biventricular pacing in congestive heart failure}, + Volume = {2}, + Year = {2002} +} + +###Article{ singh-2002, + Author = {Balbir Singh}, + Journal = {Indian Pacing Electrophysioly Journal}, + Title = {Biventricular pacing in congestive heart failure}, + Volume = {2}, + Year = {2002} +} + +###Article{ singh-2002, + Author = {Balbir Singh}, + Journal = {Indian Pacing Electrophysioly Journal}, + Title = {Biventricular pacing in congestive heart failure}, + Volume = {2}, + Year = {2002} +} + +@InCollection{ skalak-81, + Annote = {blood, red cell}, + Author = {Skalak, R.}, + BookTitle = {Mathematical aspects of physiology (Proc. Summer Sem., + Univ. Utah, Salt Lake City, Utah, 1980)}, + code = {cel8}, + Pages = {109--139}, + Publisher = {Amer. Math. Soc.}, + Series = {Lectures in Appl. Math.}, + Title = {Blood rheology}, + Volume = {19}, + Year = {1981} +} + +###InCollection{ skalak-81, + Annote = {blood, red cell}, + Author = {Skalak, R.}, + BookTitle = {Mathematical aspects of physiology (Proc. Summer Sem., + Univ. Utah, Salt Lake City, Utah, 1980)}, + code = {cel8}, + Pages = {109--139}, + Publisher = {Amer. Math. Soc.}, + Series = {Lectures in Appl. Math.}, + Title = {Blood rheology}, + Volume = {19}, + Year = {1981} +} + +@Article{ skalak-zarda-jan-chien-81, + Annote = {blood, red cell, rouleau, adhesion}, + Author = {Skalak, R. and Zarda, P.R. and Jan, K.-M. and Chien, S.}, + code = {cel10}, + Journal = {Biophys. J.}, + Pages = {771-781}, + Title = {Mechanics of rouleau formation}, + Volume = {35}, + Year = {1981} +} + +###Article{ skalak-zarda-jan-chien-81, + Annote = {blood, red cell, rouleau, adhesion}, + Author = {Skalak, R. and Zarda, P.R. and Jan, K.-M. and Chien, S.}, + code = {cel10}, + Journal = {Biophys. J.}, + Pages = {771-781}, + Title = {Mechanics of rouleau formation}, + Volume = {35}, + Year = {1981} +} + +@Article{ smith-hunter-2002, + Author = {Smith, N.P. and Mulquiney, P.J. and Nash, M.P. and + Bradley, C.P. and Nickerson, D.P. and Hunter, P.J.}, + Journal = {Chaos, Solitons and Fractals}, + Pages = {1613-1621}, + Title = {Mathematical modelling of the heart: cell to organ}, + Volume = {13}, + Year = {2002} +} + +###Article{ smith-hunter-2002, + Author = {Smith, N.P. and Mulquiney, P.J. and Nash, M.P. and + Bradley, C.P. and Nickerson, D.P. and Hunter, P.J.}, + Journal = {Chaos, Solitons and Fractals}, + Pages = {1613-1621}, + Title = {Mathematical modelling of the heart: cell to organ}, + Volume = {13}, + Year = {2002} +} + +@Article{ smith-pullan-hunter-2002, + Author = {Smith, N.P. and Pullan, A.J. and Hunter, P.J.}, + Journal = {SIAM J. Appl. Math.}, + Number = {3}, + Pages = {990-1018}, + Title = {An anatomically based model of transient coronary blood + flow in the heart}, + Volume = {62}, + Year = {2002} +} + +###Article{ smith-pullan-hunter-2002, + Author = {Smith, N.P. and Pullan, A.J. and Hunter, P.J.}, + Journal = {SIAM J. Appl. Math.}, + Number = {3}, + Pages = {990-1018}, + Title = {An anatomically based model of transient coronary blood + flow in the heart}, + Volume = {62}, + Year = {2002} +} + +@Article{ smith2002, + Title = "Mathematical modelling of the heart: cell to organ", + Journal = "Chaos, Solitons \& Fractals", + Volume = "13", + Number = "8", + Pages = "1613 - 1621", + Year = "2002", + Note = "Virtual Tissue Engineering of Cardiac + Muscle", + ISSN = "0960-0779", + DOI = "10.1016/S0960-0779(01)00170-9", + Author = "N.P Smith and P.J Mulquiney and M.P Nash and C.P Bradley + and D.P Nickerson and P.J Hunter" +} + +@Article{ sneyd-02, + Author = {Sneyd, A.D.}, + code = {mhd42}, + Journal = {Eur. J. Mech. B/Fluids}, + Pages = {247-263}, + Title = {Analysis of parametric resonance in magnetohydrodynamics}, + Volume = {21}, + Year = {2002} +} + +###Article{ sneyd-02, + Author = {Sneyd, A.D.}, + code = {mhd42}, + Journal = {Eur. J. Mech. B/Fluids}, + Pages = {247-263}, + Title = {Analysis of parametric resonance in magnetohydrodynamics}, + Volume = {21}, + Year = {2002} +} + +@Article{ sneyd-85, + Annote = {mhd, aluminium}, + Author = {Sneyd, A.D.}, + Journal = {J. Fluid Mech.}, + Pages = {223--236}, + Title = {Stability of fluid layers carrying a normal electric + current}, + Volume = {156}, + Year = {1985} +} + +###Article{ sneyd-85, + Annote = {mhd, aluminium}, + Author = {Sneyd, A.D.}, + Journal = {J. Fluid Mech.}, + Pages = {223--236}, + Title = {Stability of fluid layers carrying a normal electric + current}, + Volume = {156}, + Year = {1985} +} + +@Article{ sneyd-92, + Annote = {mhd, aluminium}, + Author = {Sneyd, A.D.}, + Journal = {J. Fluid Mech.}, + Pages = {111--126}, + Title = {Interfacial instabilities in aluminium reduction cells}, + Volume = {236}, + Year = {1992} +} + +###Article{ sneyd-92, + Annote = {mhd, aluminium}, + Author = {Sneyd, A.D.}, + Journal = {J. Fluid Mech.}, + Pages = {111--126}, + Title = {Interfacial instabilities in aluminium reduction cells}, + Volume = {236}, + Year = {1992} +} + +@Article{ sneyd-wang-94, + Author = {Sneyd, A.D. and Wang, A.}, + Journal = {J. Fluid Mech.}, + Pages = {343-359}, + Title = {Interfacial instability due to MHD mode coupling in + aluminium reduction cells}, + Volume = {263}, + Year = {1994} +} + +###Article{ sneyd-wang-94, + Author = {Sneyd, A.D. and Wang, A.}, + Journal = {J. Fluid Mech.}, + Pages = {343-359}, + Title = {Interfacial instability due to MHD mode coupling in + aluminium reduction cells}, + Volume = {263}, + Year = {1994} +} + +@Article{ solon1, + Author = {Solonnikov, V. A.}, + Journal = {Math. USSR Izvestiya}, + Number = {2}, + Pages = {381-405}, + Title = {On the transient motion of an isolated volume of viscous + incompressible fluid}, + Volume = {31}, + Year = {1988} +} + +###Article{ solon1, + Author = {Solonnikov, V. A.}, + Journal = {Math. USSR Izvestiya}, + Number = {2}, + Pages = {381-405}, + Title = {On the transient motion of an isolated volume of viscous + incompressible fluid}, + Volume = {31}, + Year = {1988} +} + +@Article{ solon2, + Author = {Solonnikov, V. A.}, + Journal = {Leningrad Math. J.}, + Number = {1}, + Pages = {227-276}, + Title = {On nonstationary motion of a finite isolated mass of + selfgravitating fluid}, + Volume = {1}, + Year = {1990} +} + +###Article{ solon2, + Author = {Solonnikov, V. A.}, + Journal = {Leningrad Math. J.}, + Number = {1}, + Pages = {227-276}, + Title = {On nonstationary motion of a finite isolated mass of + selfgravitating fluid}, + Volume = {1}, + Year = {1990} +} + +@Article{ solon4, + Author = {Solonnikov, V. A.}, + Journal = {Math. USSR Izv.}, + Number = {6}, + Pages = {1323-1358}, + Title = {Solvability of a problem of on the motion of a viscous + incompressible fluid bounded by a free surface}, + Volume = {11}, + Year = {1977} +} + +###Article{ solon4, + Author = {Solonnikov, V. A.}, + Journal = {Math. USSR Izv.}, + Number = {6}, + Pages = {1323-1358}, + Title = {Solvability of a problem of on the motion of a viscous + incompressible fluid bounded by a free surface}, + Volume = {11}, + Year = {1977} +} + +@Article{ solon5, + Author = {Solonnikov, V. A.}, + Journal = {Jour. Sov. Math}, + Pages = {223-228}, + Title = {Solvability of the problem of evolution of an isolated + volume of viscous, incompressible capillary fluid}, + Volume = {32}, + Year = {1986} +} + +###Article{ solon5, + Author = {Solonnikov, V. A.}, + Journal = {Jour. Sov. Math}, + Pages = {223-228}, + Title = {Solvability of the problem of evolution of an isolated + volume of viscous, incompressible capillary fluid}, + Volume = {32}, + Year = {1986} +} + +@Article{ solon6, + Author = {Solonnikov, V. A.}, + Journal = {Jour. Sov. Math.}, + Pages = {672-686}, + Title = {Unsteady motion of a finite mass of fluid, bounded by a + free surface}, + Volume = {40}, + Year = {1988} +} + +###Article{ solon6, + Author = {Solonnikov, V. A.}, + Journal = {Jour. Sov. Math.}, + Pages = {672-686}, + Title = {Unsteady motion of a finite mass of fluid, bounded by a + free surface}, + Volume = {40}, + Year = {1988} +} + +@Article{ solon7, + Author = {Solonnikov, V. A.}, + Journal = {Math. USSR Izv.}, + Number = {2}, + Pages = {381-405}, + Title = {Unsteady motion of an isolated volume of a viscous + incompressible fluid}, + Volume = {31}, + Year = {1988} +} + +###Article{ solon7, + Author = {Solonnikov, V. A.}, + Journal = {Math. USSR Izv.}, + Number = {2}, + Pages = {381-405}, + Title = {Unsteady motion of an isolated volume of a viscous + incompressible fluid}, + Volume = {31}, + Year = {1988} +} + +@Article{ solonnikov-87, + Author = {Solonnikov, V. A.}, + Journal = {Vestnik Leningrad Univ. Mat. Mekh. Astro.}, + Pages = {49-55}, + Title = {Evolution of an isolated volume of a viscous + incompressible capillary fluid for large time values + (Russian)}, + Volume = {3}, + Year = {1987} +} + +###Article{ solonnikov-87, + Author = {Solonnikov, V. A.}, + Journal = {Vestnik Leningrad Univ. Mat. Mekh. Astro.}, + Pages = {49-55}, + Title = {Evolution of an isolated volume of a viscous + incompressible capillary fluid for large time values + (Russian)}, + Volume = {3}, + Year = {1987} +} + +@Article{ sommer20123d, + Title = {3D constitutive modeling of the biaxial mechanical + response of intact and layer-dissected human carotid + arteries.}, + Author = {Sommer, G. and Holzapfel, G.A.}, + Journal = {J Mech Behav Biomed Mater}, + Volume = {5}, + Number = {1}, + Pages = {116-28}, + Year = {2012}, + Abstract = {Human arteries with non-atherosclerotic intimal thickening + consist of three distinct layers: adventitia, media and + intima. From a series of axial extension and inflation + tests on intact and layer-dissected human carotid arteries + (adventitia and media-intima composite), a 3D + structurally-based strain-energy function (SEF) is + calibrated, and a set of five material parameters is + identified which is not yet available in the literature. + The zero-stress states of the artery tubes investigated are + considered in the calibration process, and the related + kinematics for the finite deformation of the individual + continuum are described in detail. The SEF employed is + capable of describing the different mechanical properties + of the intact and layer-dissected tissue tubes (arterial + segments) investigated at different pressure domains and + axial stretches. The correlation coefficients and error + measures determined indicate good correlation between the + model and the experimental data for all tested tubes. Mean + values of each individual material parameter provide a kind + of 'master model' that characterizes the mean response of + all mechanical data obtained from the human carotid + arteries. The material parameters and the 3D constitutive + model serve as a foundation for finite element simulations, + and hence the analysis of more complex patient-specific + boundary-value problems in the human carotid physiology and + pathology. } +} + +@Article{ sonesson-94, + Author = {Sonesson, B. and L\"anne, T. and Vernersson, E. and + Hansen, F.}, + Title = {Sex difference in the mechanical properties of the + abdominal aorta in human beings.}, + Journal = {Journal of Vascular Surgery}, + Volume = {20}, + Year = {1994}, + Number = {6}, + Pages = {959-69}, + pubmedid = {7990192}, + ISSN = {0741-5214} +} + +###Article{ sonesson-94, + Author = {Sonesson, B. and L\"anne, T. and Vernersson, E. and + Hansen, F.}, + Title = {Sex difference in the mechanical properties of the + abdominal aorta in human beings.}, + Journal = {Journal of Vascular Surgery}, + Volume = {20}, + Year = {1994}, + Number = {6}, + Pages = {959-69}, + URL = {http://www.biomedsearch.com/nih/Sex-difference-in-mechanical-properties/7990192.html}, + pubmedid = {7990192}, + ISSN = {0741-5214} +} + +@Article{ song_computation_1991, + Title = {Computation of 3-{{D}} Velocity Fields from 3-{{D}} Cine + {{CT}} Images of a Human Heart}, + Volume = {10}, + Number = {3}, + JournalTitle = {IEEE transactions on medical imaging}, + Year = {1991}, + Pages = {295--306}, + Author = {Song, Samuel M. and Leahy, Richard M.} +} + +@Article{ song_determining_1994, + Title = {Determining Cardiac Velocity Fields and Intraventricular + Pressure Distribution from a Sequence of Ultrafast {{CT}} + Cardiac Images}, + Volume = {13}, + Number = {2}, + JournalTitle = {IEEE transactions on medical imaging}, + Year = {1994}, + Pages = {386--397}, + Author = {Song, Samuel M. and Leahy, Richard M. and Boyd, Douglas P. + and Brundage, Bruce H. and Napel, Sandy} +} + +@Article{ sosnovik2009cci, + Title = {Diffusion spectrum MRI tractography reveals the presence + of a complex network of residual myofibers in infarcted + myocardium.}, + Author = {Sosnovik, David E. and Wang, Ruopeng and Dai, Guangping + and Wang, Teresa and Aikawa, Elena and Novikov, Mikhael and + Rosenzweig, Anthony and Gilbert, Richard J. and Wedeen, Van + J.}, + Journal = {Circ Cardiovasc Imaging}, + Year = {2009}, + Month = {May}, + Number = {3}, + Pages = {206--212}, + Volume = {2}, + Abstract = {Changes in myocardial microstructure are important + components of the tissue response to infarction but are + difficult to resolve with current imaging techniques. A + novel technique, diffusion spectrum MRI tractography (DSI + tractography), was thus used to image myofiber architecture + in normal and infarcted myocardium. Unlike diffusion tensor + imaging, DSI tractography resolves multiple myofiber + populations per voxel, thus generating accurate 3D + tractograms, which we present in the myocardium for the + first time.DSI tractography was performed at 4.7 T in + excised rat hearts 3 weeks after left coronary artery + ligation (n=4) and in 4 age-matched controls. Fiber + architecture in the control hearts varied smoothly from + endocardium to epicardium, producing a symmetrical array of + crossing helical structures in which orthogonal myofibers + were separated by fibers with intermediate helix angles. + Fiber architecture in the infarcted hearts was severely + perturbed. The infarct boundary in all cases was highly + irregular and punctuated repeatedly by residual myofibers + extending from within the infarct to the border zones. In + all infarcts, longitudinal myofibers extending toward the + basal-anterior wall and transversely oriented myofibers + extending toward the septum lay in direct contact with each + other, forming nodes of orthogonal myofiber intersection or + contact.DSI tractography resolves 3D myofiber architecture + and reveals a complex network of orthogonal myofibers + within infarcted myocardium. Meshlike networks of + orthogonal myofibers in infarcted myocardium may resist + mechanical remodeling but also probably increase the risk + for lethal reentrant arrhythmias. DSI tractography thus + provides a new and important readout of tissue injury after + myocardial infarction.}, + DOI = {10.1161/CIRCIMAGING.108.815050}, + Institution = {Martinos Center for Biomedical Imaging, Department of + Radiology, Massachusetts General Hospital, Harvard Medical + School, Boston, Mass., USA. sosnovik@nmr.mgh.harvard.edu}, + Keywords = {Animals; Diffusion Magnetic Resonance Imaging; Disease + Models, Animal; Image Interpretation, Computer-Assisted; + Imaging, Three-Dimensional; Myocardial Infarction, + pathology; Myocardium, pathology; Myofibrils, pathology; + Rats; Rats, Sprague-Dawley}, + Language = {eng}, + medline-pst = {ppublish}, + owner = {stoeckc}, + pii = {CIRCIMAGING.108.815050}, + pmid = {19808594}, + timestamp = {2015.07.24}, + URL = {http://dx.doi.org/10.1161/CIRCIMAGING.108.815050} +} + +@Article{ sotelo_3d_2016, + Title = {{{3D}} Quantification of Wall Shear Stress and Oscillatory + Shear Index Using a Finite-Element Method in {{3D CINE + PC}}-{{MRI}} Data of the Thoracic Aorta}, + Author = {Sotelo, Julio and Urbina, Jesus and Valverde, Israel and + Tejos, Cristian and Irarr{\'a}zaval, Pablo and Andia, + Marcelo E. and Uribe, Sergio and Hurtado, Daniel E.}, + Year = {2016}, + Volume = {35}, + Pages = {1475--1487}, + Journal = {IEEE transactions on medical imaging}, + Number = {6} +} + +@Article{ sotelo_pressure_2015, + langid = {english}, + Title = {Pressure Gradient Prediction in Aortic Coarctation Using a + Computational-Fluid-Dynamics Model: Validation against + Invasive Pressure Catheterization at Rest and + Pharmacological Stress}, + Volume = {17}, + ISSN = {1532-429X}, + URL = {https://jcmr-online.biomedcentral.com/articles/10.1186/1532-429X-17-S1-Q78}, + DOI = {10.1186/1532-429X-17-S1-Q78}, + ShortTitle = {Pressure Gradient Prediction in Aortic Coarctation Using a + Computational-Fluid-Dynamics Model}, + Number = {S1}, + JournalTitle = {Journal of Cardiovascular Magnetic Resonance}, + URLDate = {2019-01-29}, + Year = {2015-12}, + Author = {Sotelo, Julio A and Valverde, Israel and Beerbaum, Philipp + B and Greil, Gerald F and Schaeffter, Tobias and Razavi, + Reza and Hurtado, Daniel E and Uribe, Sergio and Figueroa, + Carlos A} +} + +@Article{ sotelo_three-dimensional_2018, + Title = {Three-Dimensional Quantification of Vorticity and Helicity + from {{3D}} Cine {{PC}}-{{MRI}} Using Finite-Element + Interpolations}, + Author = {Sotelo, Julio and Urbina, Jes{\'u}s and Valverde, Israel + and Mura, Joaqu{\'i}n and Tejos, Cristi{\'a}n and + Irarrazaval, Pablo and Andia, Marcelo E. and Hurtado, + Daniel E. and Uribe, Sergio}, + Year = {2018}, + Volume = {79}, + Pages = {541--553}, + Journal = {Magnetic resonance in medicine}, + Number = {1} +} + +@Article{ soulaimani-fortin-dhatt-ouellet-91, + Author = {Soula{\"\i}mani, A. and Fortin, M. and Dhatt, G. and + Ouellet, Y.}, + code = {mob3}, + Journal = {Comp. Meth. Appl. Mech. Engng}, + Pages = {265-296}, + Title = {Finite element simulation of two- and three dimensional + free surface flows}, + Volume = {86}, + Year = {1991} +} + +###Article{ soulaimani-fortin-dhatt-ouellet-91, + Author = {Soula{\"\i}mani, A. and Fortin, M. and Dhatt, G. and + Ouellet, Y.}, + code = {mob3}, + Journal = {Comp. Meth. Appl. Mech. Engng}, + Pages = {265-296}, + Title = {Finite element simulation of two- and three dimensional + free surface flows}, + Volume = {86}, + Year = {1991} +} + +@Article{ soulaimani-saad-98, + Author = {Soula{\" {\i}}mani, A. and Saad, Y.}, + code = {mob4}, + Journal = {Comput. Meth Appl. Mech Engrg.}, + Pages = {79-106}, + Title = {An arbitrary {Lagrangian-Eulerian} finite element method + for solving three-dimensional free surface flows}, + Volume = {162}, + Year = {1998} +} + +###Article{ soulaimani-saad-98, + Author = {Soula{\" {\i}}mani, A. and Saad, Y.}, + code = {mob4}, + Journal = {Comput. Meth Appl. Mech Engrg.}, + Pages = {79-106}, + Title = {An arbitrary {Lagrangian-Eulerian} finite element method + for solving three-dimensional free surface flows}, + Volume = {162}, + Year = {1998} +} + +@Article{ soyibou-murea-08, + Author = {Soyibou, S. and Murea, C.M.}, + DOI = {DOI: 10.1016/j.cma.2008.07.010}, + ISSN = {0045-7825}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Number = {2}, + Pages = {210 - 222}, + Title = {A stable time advancing scheme for solving fluid-structure + interaction problem at small structural displacements}, + Volume = {198}, + Year = {2008} +} + +###Article{ soyibou-murea-08, + Author = {Soyibou, S. and Murea, C.M.}, + DOI = {DOI: 10.1016/j.cma.2008.07.010}, + ISSN = {0045-7825}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Number = {2}, + Pages = {210 - 222}, + Title = {A stable time advancing scheme for solving fluid-structure + interaction problem at small structural displacements}, + Volume = {198}, + Year = {2008}, + bdsk-url-1 = {http://dx.doi.org/10.1016/j.cma.2008.07.010} +} + +@Article{ spilker2010tuning, + Title = {Tuning multidomain hemodynamic simulations to match + physiological measurements}, + Author = {Spilker, Ryan L and Taylor, Charles A}, + Journal = {Annals of biomedical engineering}, + Volume = {38}, + Number = {8}, + Pages = {2635--2648}, + Year = {2010}, + Publisher = {Springer} +} + +@Article{ stalhand-09, + Author = {Stalhand, J.}, + Journal = {Biomechanics and Modeling in Mechanobiology}, + Number = {2}, + Pages = {141-148}, + Title = {Determination of human arterial wall parameters from + clinical data}, + Volume = {8}, + Year = {2009} +} + +@Article{ stein-benney-eal-00, + Author = {Stein, K. and Benney, R. and Kalro, V. and Tezduyar, T.E. + and Leonard, J. and Accorsi, M.}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Number = {3--4}, + Pages = {373--386}, + Title = {Parachute fluid-structure interactions: {3-D} + computation}, + Volume = {190}, + Year = {2000} +} + +###Article{ stein-benney-eal-00, + Author = {Stein, K. and Benney, R. and Kalro, V. and Tezduyar, T.E. + and Leonard, J. and Accorsi, M.}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Number = {3--4}, + Pages = {373--386}, + Title = {Parachute fluid-structure interactions: {3-D} + computation}, + Volume = {190}, + Year = {2000} +} + +@Article{ steinman_image-based_2002, + Title = {Image-Based Computational Fluid Dynamics Modeling in + Realistic Arterial Geometries}, + Volume = {30}, + Number = {4}, + JournalTitle = {Annals of biomedical engineering}, + Year = {2002}, + Pages = {483--497}, + Author = {Steinman, David A.} +} + +@Article{ steinman_reconstruction_2002, + Title = {Reconstruction of Carotid Bifurcation Hemodynamics and + Wall Thickness Using Computational Fluid Dynamics and + {{MRI}}}, + Volume = {47}, + Number = {1}, + JournalTitle = {Magnetic Resonance in Medicine: An Official Journal of the + International Society for Magnetic Resonance in Medicine}, + Year = {2002}, + Pages = {149--159}, + Author = {Steinman, David A. and Thomas, Jonathan B. and Ladak, + Hanif M. and Milner, Jaques S. and Rutt, Brian K. and + Spence, J. David} +} + +@Article{ stejskal1965jcp, + Title = {Use of Spin Echoes in a Pulsed Magnetic-Field Gradient to + Study Anisotropic, Restricted Diffusion and Flow}, + Author = {Stejskal, E. O.}, + Journal = {The Journal of Chemical Physics}, + Year = {1965}, + Number = {10}, + Pages = {3597}, + Volume = {43}, + DOI = {10.1063/1.1696526}, + ISSN = {00219606}, + Language = {en}, + owner = {david}, + timestamp = {2015-05-12 18:30:54}, + URL = {http://scitation.aip.org/content/aip/journal/jcp/43/10/10.1063/1.1696526}, + URLDate = {2015-05-12} +} + +@Article{ stejskal1965spin, + Author = {Stejskal, EO and Tanner, JE}, + Title = {Spin diffusion measurements: spin echoes in the presence + of a time-dependent field gradient}, + Journal = {{The Journal of Chemical Physics}}, + Year = {1965}, + Volume = {42}, + Pages = {288--292}, + Number = {1}, + Keywords = {DTMRI - general}, + Publisher = {AIP Publishing} +} + +@Article{ stenberg09, + Author = "Juntunen, M. and Stenberg, R.", + Title = "{Nitsche's Method for General Boundary Conditions}", + Journal = {Math. Comp.}, + fjournal = {Mathematics of Computation}, + Volume = "78", + Number = "267", + Pages = "1353--1374", + Year = "2009" +} + +###Article{ stenberg09, + Author = "Juntunen, M. and Stenberg, R.", + Title = "{Nitsche's Method for General Boundary Conditions}", + Journal = {Math. Comp.}, + fjournal = {Mathematics of Computation}, + Volume = "78", + Number = "267", + Pages = "1353--1374", + Year = "2009" +} + +@Article{ stetter-78, + Author = {Stetter, H.J.}, + Journal = {Numer. Math.}, + Pages = {425--443}, + Title = {The defect correction principle and discretization + methods}, + Volume = {29}, + Year = {1978} +} + +###Article{ stetter-78, + Author = {Stetter, H.J.}, + Journal = {Numer. Math.}, + Pages = {425--443}, + Title = {The defect correction principle and discretization + methods}, + Volume = {29}, + Year = {1978} +} + +@Article{ stoeck2014dual, + Title = {Dual-Phase Cardiac Diffusion Tensor Imaging with Strain + Correction}, + Author = {Stoeck, , Christian T. AND Kalinowska, , Aleksandra AND + von Deuster, , Constantin AND Harmer, , Jack AND Chan, , + Rachel W. AND Niemann, , Markus AND Manka, , Robert AND + Atkinson, , David AND Sosnovik, , David E. AND Mekkaoui, , + Choukri AND Kozerke, , Sebastian}, + Journal = {PLoS ONE}, + Year = {2014}, + Month = {09}, + Number = {9}, + Pages = {e107159}, + Volume = {9}, + Publisher = {Public Library of Science} +} + +@Article{ stoeck2014po, + Title = {Dual-phase cardiac diffusion tensor imaging with strain + correction.}, + Author = {Stoeck, Christian T. and Kalinowska, Aleksandra and {von + Deuster}, Constantin and Harmer, Jack and Chan, Rachel W. + and Niemann, Markus and Manka, Robert and Atkinson, David + and Sosnovik, David E. and Mekkaoui, Choukri and Kozerke, + Sebastian}, + Journal = {PLoS One}, + Year = {2014}, + Number = {9}, + Pages = {e107159}, + Volume = {9}, + Abstract = {In this work we present a dual-phase diffusion tensor + imaging (DTI) technique that incorporates a correction + scheme for the cardiac material strain, based on 3D + myocardial tagging.In vivo dual-phase cardiac DTI with a + stimulated echo approach and 3D tagging was performed in 10 + healthy volunteers. The time course of material strain was + estimated from the tagging data and used to correct for + strain effects in the diffusion weighted acquisition. Mean + diffusivity, fractional anisotropy, helix, transverse and + sheet angles were calculated and compared between systole + and diastole, with and without strain correction. Data + acquired at the systolic sweet spot, where the effects of + strain are eliminated, served as a reference.The impact of + strain correction on helix angle was small. However, large + differences were observed in the transverse and sheet angle + values, with and without strain correction. The standard + deviation of systolic transverse angles was significantly + reduced from 35.9±3. 9° to 27.8°±3.5° (p<0.001) upon + strain-correction indicating more coherent fiber tracks + after correction. Myocyte aggregate structure was aligned + more longitudinally in systole compared to diastole as + reflected by an increased transmural range of helix angles + (71.8°±3.9° systole vs. 55.6°±5.6°, p<0.001 + diastole). While diastolic sheet angle histograms had + dominant counts at high sheet angle values, systolic + histograms showed lower sheet angle values indicating a + reorientation of myocyte sheets during contraction.An + approach for dual-phase cardiac DTI with correction for + material strain has been successfully implemented. This + technique allows assessing dynamic changes in myofiber + architecture between systole and diastole, and emphasizes + the need for strain correction when sheet architecture in + the heart is imaged with a stimulated echo approach.}, + DOI = {10.1371/journal.pone.0107159}, + Institution = {Institute for Biomedical Engineering, University and ETH + Zurich, Zurich, Switzerland; Imaging Sciences and + Biomedical Engineering, King's College London, London, + United Kingdom.}, + Language = {eng}, + medline-pst = {epublish}, + owner = {stoeckc}, + pii = {PONE-D-14-20521}, + pmid = {25191900}, + timestamp = {2015.07.24}, + URL = {http://dx.doi.org/10.1371/journal.pone.0107159} +} + +@Article{ stoeck2015mrm, + Title = {Second-order motion-compensated spin echo diffusion tensor + imaging of the human heart.}, + Author = {Stoeck, Christian T. and {von Deuster}, Constantin and + Genet, Martin and Atkinson, David and Kozerke, Sebastian}, + Journal = {Magn Reson Med}, + Year = {2015}, + Month = {May}, + Abstract = {Myocardial microstructure has been challenging to probe in + vivo. Spin echo-based diffusion-weighted sequences allow + for single-shot acquisitions but are highly sensitive to + cardiac motion. In this study, the use of second-order + motion-compensated diffusion encoding was compared with + first-order motion-compensated diffusion-weighted imaging + during systolic contraction of the heart.First- and + second-order motion-compensated diffusion encoding + gradients were incorporated into a triggered single-shot + spin echo sequence. The effect of contractile motion on the + apparent diffusion coefficients and tensor orientations was + investigated in vivo from basal to apical level of the + heart.Second-order motion compensation was found to + increase the range of systolic trigger delays from + 30\%-55\% to 15\%-77\% peak systole at the apex and from + 25\%-50\% to 15\%-79\% peak systole at the base. Diffusion + tensor analysis yielded more physiological transmural + distributions when using second-order motion-compensated + diffusion tensor imaging.Higher-order motion-compensated + diffusion encoding decreases the sensitivity to cardiac + motion, thereby enabling cardiac DTI over a wider range of + time points during systolic contraction of the heart. Magn + Reson Med, 2015. © 2015 Wiley Periodicals, Inc.}, + DOI = {10.1002/mrm.25784}, + Institution = {Division of Imaging Sciences and Biomedical Engineering, + King's College London, London, United Kingdom.}, + Language = {eng}, + medline-pst = {aheadofprint}, + owner = {stoeckc}, + pmid = {26033456}, + timestamp = {2015.07.24}, + URL = {http://dx.doi.org/10.1002/mrm.25784} +} + +@Article{ stoeck2015second, + Author = {Stoeck, Christian T. and {von Deuster}, Constantin and + Genet, Martin and Atkinson, David and Kozerke, Sebastian}, + Title = {Second-order motion-compensated spin echo diffusion tensor + imaging of the human heart.}, + Journal = {Magn Reson Med}, + Year = {2015}, + Month = {May}, + DOI = {10.1002/mrm.25784}, + Institution = {Division of Imaging Sciences and Biomedical Engineering, + King's College London, London, United Kingdom.}, + Keywords = {DTMRI - cardiac in-vivo}, + Language = {eng}, + medline-pst = {aheadofprint}, + owner = {andreas}, + pmid = {26033456}, + timestamp = {2015.07.07} +} + +@Book{ stoker-58, + Author = {Stoker, J.J.}, + Publisher = {Wiley}, + Title = {Water waves, the mathematical theory with applications}, + Year = {1958} +} + +###Book{ stoker-58, + Author = {Stoker, J.J.}, + Publisher = {Wiley}, + Title = {Water waves, the mathematical theory with applications}, + Year = {1958} +} + +@PhdThesis{ stoufflet-84, + Author = {B. Stoufflet}, + Month = {mars}, + School = {universit{\'e} de Paris VI}, + Title = {R{\'e}solution num{\'e}rique des {\'e}quations d'Euler des + fluides parfaits compressibles par des sch{\'e}mas + implicites en {\'e}l{\'e}ments finis}, + Year = {1984} +} + +###PhdThesis{ stoufflet-84, + Author = {B. Stoufflet}, + Month = {mars}, + School = {universit{\'e} de Paris VI}, + Title = {R{\'e}solution num{\'e}rique des {\'e}quations d'Euler des + fluides parfaits compressibles par des sch{\'e}mas + implicites en {\'e}l{\'e}ments finis}, + Year = {1984} +} + +@Article{ stout_2018_2018, + Title = {2018 {{AHA}}/{{ACC Guideline}} for the {{Management}} of + {{Adults With Congenital Heart Disease}}}, + Author = {Stout, Karen K. and Daniels, Curt J. and Aboulhosn, Jamil + A. and Bozkurt, Biykem and Broberg, Craig S. and Colman, + Jack M. and Crumb, Stephen R. and Dearani, Joseph A. and + Fuller, Stephanie and Gurvitz, Michelle and Khairy, Paul + and Landzberg, Michael J. and Saidi, Arwa and Valente, Anne + Marie and Van Hare, George F.}, + Year = {2018}, + Month = aug, + ISSN = {07351097}, + DOI = {10.1016/j.jacc.2018.08.1029}, + Journal = {Journal of the American College of Cardiology}, + Language = {en} +} + +@Article{ streeter1966engineering, + Author = {Streeter, Daniel D and Bassett, David L}, + Title = {An engineering analysis of myocardial fiber orientation in + pig's left ventricle in systole}, + Journal = {The Anatomical Record}, + Year = {1966}, + Volume = {155}, + Pages = {503--511}, + Number = {4}, + Publisher = {Wiley Online Library} +} + +@Article{ streeter1969, + Author = {Streeter, D. D. and Spotnitz, H. M. and Patel, D. P. and + Ross, J. and Sonnenblick, E. H.}, + Title = {Fiber Orientation in the Canine Left Ventricle during + Diastole and Systole}, + Volume = {24}, + Number = {3}, + Pages = {339-347}, + Year = {1969}, + Journal = {Circulation Research} +} + +@Article{ streeter1973engineering2, + Author = {Streeter, Daniel D. and Hanna, William T.}, + Title = {Engineering Mechanics for Successive States in Canine Left + Ventricular Myocardium: II. Fiber Angle and Sarcomere + Length}, + Journal = {Circulation Research}, + Year = {1973}, + Volume = {33}, + Pages = {656-664}, + Number = {6}, + DOI = {10.1161/01.RES.33.6.656}, + EPrint = {http://circres.ahajournals.org/content/33/6/656.full.pdf+html}, + URL = {http://circres.ahajournals.org/content/33/6/656.abstract} +} + +@Article{ streeter1979, + Author = {Streeter, D.D.}, + Title = {Gross morphology and fiber geometry of the heart}, + Journal = {Handbook of Physiology}, + Publisher = {Williams & Wilkins}, + Year = {1979}, + Pages = {61-112} +} + +@InCollection{ sugihara-seki_fundamentals_2016, + Location = {{Tokyo}}, + Title = {Fundamentals of {{Vascular Bio}}-Fluid and {{Solid + Mechanics}}}, + ISBN = {978-4-431-54800-3}, + BookTitle = {Vascular {{Engineering}}}, + Publisher = {{Springer}}, + Year = {2016}, + Pages = {13-45}, + Author = {Sugihara-Seki, Masako and Yamada, Hiroshi} +} + +@Article{ sulaiman_vitro_2008, + Title = {In Vitro Non-Rigid Life-Size Model of Aortic Arch Aneurysm + for Endovascular Prosthesis Assessment}, + Author = {Sulaiman, Abdulrazzaq and Boussel, Lo{\^i}c and Taconnet, + Fr{\'e}d{\'e}ric and Serfaty, Jean Michel and Alsaid, Hasan + and Attia, Cherif and Huet, Laurent and Douek, Philippe}, + Year = {2008}, + Volume = {33}, + Pages = {53--57}, + Journal = {European Journal of Cardio-Thoracic Surgery}, + Number = {1} +} + +@Book{ sun-94, + Author = {Sun, N.Z.}, + Publisher = {Kluwer}, + Title = {Inverse problems in groundwater modeling}, + Year = {1994} +} + +###Book{ sun-94, + Author = {Sun, N.Z.}, + Publisher = {Kluwer}, + Title = {Inverse problems in groundwater modeling}, + Year = {1994} +} + +@Article{ sun-sun-elimelech-ryan-01, + Annote = {inverse problem, bacteria}, + Author = {Sun, N. and Sun, N.-Z. and Elimelech, M. and Ryan, J. N.}, + code = {por19}, + Journal = {Water resources research}, + Number = {2}, + Pages = {209-222}, + Title = {Sensitivity analysis and parameter identifiability for + colloid transport in geochemically heterogeneous porous + media}, + Volume = {37}, + Year = {2001} +} + +###Article{ sun-sun-elimelech-ryan-01, + Annote = {inverse problem, bacteria}, + Author = {Sun, N. and Sun, N.-Z. and Elimelech, M. and Ryan, J. N.}, + code = {por19}, + Journal = {Water resources research}, + Number = {2}, + Pages = {209-222}, + Title = {Sensitivity analysis and parameter identifiability for + colloid transport in geochemically heterogeneous porous + media}, + Volume = {37}, + Year = {2001} +} + +@InProceedings{ sundar2006estimating, + Title = {Estimating myocardial fiber orientations by template + warping}, + Author = {Sundar, Hari and Shen, Dinggang and Biros, George and + Litt, Harold and Davatzikos, Christos}, + BookTitle = {Biomedical Imaging: Nano to Macro, 2006. 3rd IEEE + International Symposium on}, + Pages = {73--76}, + Year = {2006}, + Organization = {IEEE} +} + +@Article{ sutton1997circ, + Title = {Cardiovascular Death and Left Ventricular Remodeling Two + Years After Myocardial Infarction: Baseline Predictors and + Impact of Long-term Use of Captopril: Information From the + Survival and Ventricular Enlargement (SAVE) Trial}, + Author = {Sutton, Martin St. John and Pfeffer, Marc A. and Moye, + Lemuel and Plappert, Ted and Rouleau, Jean L. and Lamas, + Gervasio and Rouleau, Jacques and Parker, John O. and + Arnold, Malcolm O. and Sussex, Bruce and Braunwald, Eugene + and for the SAVE Investigators}, + Journal = {Circulation}, + Year = {1997}, + Number = {10}, + Pages = {3294-3299}, + Volume = {96}, + Abstract = {Background We quantified cardiovascular death and/or left + ventricular (LV) dilatation in patients from the SAVE trial + to determine whether dilatation continued beyond 1 year, + whether ACE inhibitor therapy attenuated late LV + dilatation, and whether any baseline descriptors predicted + late dilatation.Methods and Results Two-dimensional + echocardiograms were obtained in 512 patients at 11±3 days + and 1 and 2 years postinfarction to assess LV size, + percentage of the LV that was akinetic/dyskinetic (%AD), + and LV shape index. LV function was assessed by + radionuclide ejection fraction. Two hundred sixty-three + patients (51.4%) sustained cardiovascular death and/or LV + diastolic dilatation; 279 (54.5%) had cardiovascular death + and/or systolic dilatation. In 373 patients with serial + echocardiograms, LV end-diastolic and end-systolic sizes + increased progressively from baseline to 2 years (both + P<.01). More patients with LV dilatation had a decrease in + ejection fraction: 24.8% versus 6.8% (P<. 001) (diastole) + and 25.7% versus 5.3% (P<.001) (systole). Captopril + attenuated diastolic LV dilatation at 2 years (P=.048), but + this effect was carried over from the first year of therapy + because changes in LV size with captopril beyond 1 year + were similar to those with placebo. Predictors of + cardiovascular death and/or dilatation were age (P=.023), + prior infarction (P<.001), lower ejection fraction + (P<.001), angina (P=.007), heart failure (P=.002), LV size + (P<.001), and infarct size (%AD) (P<.001).Conclusions + Cardiovascular death and/or LV dilatation occurred in >50% + of patients by 2 years. LV dilatation is progressive, + associated with chamber distortion and deteriorating + function that is unaffected by captopril beyond 1 year.}, + comments = {no pdf available... see + http://circ.ahajournals.org/content/96/10/3294.full}, + DOI = {10.1161/01.CIR.96.10.3294}, + timestamp = {2015/09/14}, + URL = {http://circ.ahajournals.org/content/96/10/3294.abstract} +} + +@Article{ sutton2000circ, + Title = {Left Ventricular Remodeling After Myocardial Infarction: + Pathophysiology and Therapy}, + Author = {Sutton, Martin G. St. John and Sharpe, Norman}, + Journal = {Circulation}, + Year = {2000}, + Number = {25}, + Pages = {2981-2988}, + Volume = {101}, + DOI = {10.1161/01.CIR.101.25.2981}, + EPrint = {http://circ.ahajournals.org/content/101/25/2981.full.pdf+html}, + File = {sutton00.pdf:sutton00.pdf:PDF}, + timestamp = {2014/09/17}, + URL = {http://circ.ahajournals.org/content/101/25/2981.short} +} + +@Article{ svihlova_determination_2016, + Title = {Determination of Pressure Data from Velocity Data with a + View toward Its Application in Cardiovascular Mechanics. + {{Part}} 1. {{Theoretical}} Considerations}, + ISSN = {0020-7225}, + URL = {http://www.sciencedirect.com/science/article/pii/S0020722515001858}, + DOI = {10.1016/j.ijengsci.2015.11.002}, + Abstract = {The non-invasive determination of the pressure (mean + normal stress) in a flowing fluid has ramifications in a + variety of important problems: the flow of blood in blood + vessels, flows taking place in inaccessible locations in + complex internal geometries that occur in mechanical + systems, etc. In this paper we discuss a rigorous new + mathematical procedure for the determination of the + pressure (mean normal stress) field, from data for the + velocity field that can be obtained through imaging + procedures such as 4D magnetic resonance imaging or + echocardiography. We then use the procedure to demonstrate + its efficacy by considering flows in an idealized geometry + with a symmetric and asymmetric obstruction. We delineate + the superiority of the method with regard to the methods + that are currently in place. In Part 2 of this two part + paper, we study the loss of pressure and the dissipation + that occurs due to the flow of blood across a diseased + valve (the pressure loss being an important indicator of + the extent of the valvular disease) as well as the flow + taking place in a realistic cerebral aneurysm.}, + JournalTitle = {International Journal of Engineering Science}, + ShortJournal = {International Journal of Engineering Science}, + URLDate = {2016-05-23}, + Year = {2016}, + Author = {Švihlová, H. and Hron, J. and Málek, J. and Rajagopal, K. R. and Rajagopal, K.} +} + +@Article{ swanson1974dimensions, + Title = {Dimensions and geometric relationships of the human aortic + value as a function of pressure}, + Author = {Swanson, W. and Clark, R.}, + Journal = {Circulation research}, + Volume = {35}, + Number = {6}, + Pages = {871--882}, + Year = {1974}, + Publisher = {Am Heart Assoc} +} + +@Article{ swynghedaww1999pr, + Title = {Molecular Mechanisms of Myocardial Remodeling}, + Author = {Swynghedaww, Bernard}, + Journal = {Physiological Reviews}, + Year = {1999}, + Number = {1}, + Pages = {215--262}, + Volume = {79}, + Abstract = {Swynghedauw, Bernard. Molecular Mechanisms of Myocardial + Remodeling. Physiol. Rev. 79: 215{\textendash}262, 1999. + {\textemdash} + {\textquotedblleft}Remodeling{\textquotedblright} implies + changes that result in rearrangement of normally existing + structures. This review focuses only on permanent + modifications in relation to clinical dysfunction in + cardiac remodeling (CR) secondary to myocardial infarction + (MI) and/or arterial hypertension and includes a special + section on the senescent heart, since CR is mainly a + disease of the elderly. From a biological point of view, CR + is determined by 1 ) the general process of adaptation + which allows both the myocyte and the collagen network to + adapt to new working conditions; 2) ventricular fibrosis, + i.e., increased collagen concentration, which is + multifactorial and caused by senescence, ischemia, various + hormones, and/or inflammatory processes; 3) cell death, a + parameter linked to fibrosis, which is usually due to + necrosis and apoptosis and occurs in nearly all models of + CR. The process of adaptation is associated with various + changes in genetic expression, including a general + activation that causes hypertrophy, isogenic shifts which + result in the appearance of a slow isomyosin, and a new + Na+-K+-ATPase with a low affinity for sodium, reactivation + of genes encoding for atrial natriuretic fator and the + renin-angiotensin system, and a diminished concentration of + sarcoplasmic reticulum Ca2+-ATPase, ?-adrenergic receptors, + and the potassium channel responsible for transient outward + current. From a clinical point of view, fibrosis is for the + moment a major marker for cardiac failure and a crucial + determinant of myocardial heterogeneity, increasing + diastolic stiffness, and the propensity for reentry + arrhythmias. In addition, systolic dysfunction is + facilitated by slowing of the calcium transient and the + downregulation of the entire adrenergic system. + Modifications of intracellular calcium movements are the + main determinants of the triggered activity and + automaticity that cause arrhythmias and alterations in + relaxation.}, + File = {swynghedaww99.pdf:swynghedaww99.pdf:PDF}, + ISSN = {0031-9333}, + Publisher = {American Physiological Society}, + timestamp = {2015/09/13} +} + +###InCollection{ tada_hemodynamics_2016, + Location = {{Tokyo}}, + Title = {Hemodynamics in {{Physio}}- and {{Pathological Vessels}}}, + ISBN = {978-4-431-54800-3}, + BookTitle = {Vascular {{Engineering}}}, + Publisher = {{Springer}}, + Year = {2016}, + Pages = {69-98}, + Author = {Tada, Shigeru and Tarbell, John M.} +} + +@Article{ taieb-moudni-benchaa-2002, + Author = {Taieb, J. and Moudni, T. and Foltzer, E. and et al.}, + Journal = {Annales de cardiologie et d'ang{\'e}iologie}, + Pages = {289-295}, + Title = {Resynchronisation du coeur d{\'e}faillant par la + stimulation}, + Volume = {51}, + Year = {2002} +} + +###Article{ taieb-moudni-benchaa-2002, + Author = {Taieb, J. and Moudni, T. and Foltzer, E. and et al.}, + Journal = {Annales de cardiologie et d'ang{\'e}iologie}, + Pages = {289-295}, + Title = {Resynchronisation du coeur d{\'e}faillant par la + stimulation}, + Volume = {51}, + Year = {2002} +} + +###Article{ taieb-moudni-benchaa-2002, + Author = {Taieb, J. and Moudni, T. and Foltzer, E. and et al.}, + Journal = {Annales de cardiologie et d'ang{\'e}iologie}, + Pages = {289-295}, + Title = {Resynchronisation du coeur d{\'e}faillant par la + stimulation}, + Volume = {51}, + Year = {2002} +} + +###Article{ taieb-moudni-benchaa-2002, + Author = {Taieb, J. and Moudni, T. and Foltzer, E. and et al.}, + Journal = {Annales de cardiologie et d'ang{\'e}iologie}, + Pages = {289-295}, + Title = {Resynchronisation du coeur d{\'e}faillant par la + stimulation}, + Volume = {51}, + Year = {2002} +} + +@Article{ talagrand_assimilation_1997, + Title = {Assimilation of Observations, an Introduction (Gtspecial + Issueltdata Assimilation in Meteology and Oceanography: + {{Theory}} and Practice)}, + Volume = {75}, + ShortTitle = {Assimilation of Observations, an Introduction (Gtspecial + Issueltdata Assimilation in Meteology and Oceanography}, + Issue = {1B}, + JournalTitle = {Journal of the Meteorological Society of Japan. Ser. II}, + Year = {1997}, + Pages = {191--209}, + Author = {Talagrand, Olivier} +} + +@Book{ talktalk, + Title = {{Circulatory system}}, + Author = {{Talk Talk Encyclopaedia}}, + Year = {2011} +} + +###Book{ talktalk, + Title = {{Circulatory system}}, + Author = {{Talk Talk Encyclopaedia}}, + Address = {\url{http://www.talktalk.co.uk/reference/encyclopaedia/hutchinson/m0006777.html}}, + Year = {2011} +} + +@Article{ tam-69, + Annote = {porous, darcy}, + Author = {Tam, C. K. W.}, + code = {cel14}, + Journal = {J. Fluid Mech.}, + Pages = {537-546}, + Title = {The drag on a cloud of sperical particles in low Reynolds + number flow}, + Volume = {38}, + Year = {1969} +} + +###Article{ tam-69, + Annote = {porous, darcy}, + Author = {Tam, C. K. W.}, + code = {cel14}, + Journal = {J. Fluid Mech.}, + Pages = {537-546}, + Title = {The drag on a cloud of sperical particles in low Reynolds + number flow}, + Volume = {38}, + Year = {1969} +} + +@Article{ tan-et-al-08, + Author = {Tang, D. and Yang, C. and Mondal, S. and Liu, F. and + Canton, G. and Hatsukami, T.S. and Yuan, C.}, + Journal = {J Biomech.}, + Number = {4}, + Pages = {727--736}, + Title = {A negative correlation between human carotid + atherosclerotic plaque progression and plaque wall stress: + in vivo {M}{R}{I}-based 2{D}/3{D} {F}{S}{I} models}, + Volume = {41}, + Year = {2008} +} + +###Article{ tan-et-al-08, + Author = {Tang, D. and Yang, C. and Mondal, S. and Liu, F. and + Canton, G. and Hatsukami, T.S. and Yuan, C.}, + Journal = {J Biomech.}, + Number = {4}, + Pages = {727--736}, + Title = {A negative correlation between human carotid + atherosclerotic plaque progression and plaque wall stress: + in vivo {M}{R}{I}-based 2{D}/3{D} {F}{S}{I} models}, + Volume = {41}, + Year = {2008} +} + +@Article{ tan_comparison_2012, + langid = {english}, + Title = {Comparison of {{Aortic Flow Patterns Before}} and {{After + Transcatheter Aortic Valve Implantation}}}, + Volume = {3}, + ISSN = {1869-4098}, + URL = {https://doi.org/10.1007/s13239-011-0073-3}, + DOI = {10.1007/s13239-011-0073-3}, + Abstract = {Little is known of the likely changes in blood flow + velocity profiles and aortic wall shear stress (WSS) + following transcatheter aortic valve implantation (TAVI). + The objective of this study was to investigate the effects + of TAVI on flow patterns in the thoracic aorta by using + cardiovascular magnetic resonance imaging (CMR) and + computational fluid dynamics (CFD). An elderly patient with + aortic stenosis was examined using MRI pre- and post-TAVI, + and CFD simulations were carried out incorporating + MRI-derived patient-specific anatomy and upstream flow + conditions. Pre-TAVI velocity profiles demonstrated the + highly disturbed turbulent flow and jet impacting the wall + of the arch owing to the partial opening of the stenosed + aortic valve, with likely pathological effects. In the + Post-TAVI aorta, velocity profiles were similar to those of + healthy aortas with spatially more uniform WSS and lower + turbulence levels, demonstrating the favourable effects of + the TAVI procedure in restoring normal aortic flow. This + study has shown both the effectiveness of TAVI on an + individual patient and the advantage of the combined CMR + and CFD method for a comprehensive patient-specific + assessment of pre- and post-TAVI aortic flow patterns and + WSS over CMR alone.}, + Number = {1}, + JournalTitle = {Cardiovascular Engineering and Technology}, + ShortJournal = {Cardiovasc Eng Tech}, + URLDate = {2019-02-21}, + Year = {2012-03-01}, + Pages = {123-135}, + Author = {Tan, F. P. P. and Xu, X. Y. and Torii, R. and Wood, N. B. + and Delahunty, N. and Mullen, M. and Moat, N. and + Mohiaddin, R.} +} + +@Article{ tan_doppler_2005, + Title = {Doppler Echocardiographic Profile and Indexes in the + Evaluation of Aortic Coarctation in Patients before and + after Stenting}, + Volume = {46}, + Number = {6}, + JournalTitle = {Journal of the American College of Cardiology}, + Year = {2005}, + Pages = {1045--1053}, + Author = {Tan, Ju-Le and Babu-Narayan, Sonya V. and Henein, Michael + Y. and Mullen, Michael and Li, Wei} +} + +@Article{ tanaka, + Author = {Tanaka, N.}, + Journal = {Com. Par. Diff. Eq.}, + Number = {1-2}, + Pages = {41-81}, + Title = {Global existence of two-phase non-homogeneous viscous + incompressible fluid flow}, + Volume = {18}, + Year = 1993 +} + +###Article{ tanaka, + Author = {Tanaka, N.}, + Journal = {Com. Par. Diff. Eq.}, + Number = {1-2}, + Pages = {41-81}, + Title = {Global existence of two-phase non-homogeneous viscous + incompressible fluid flow}, + Volume = {18}, + Year = 1993 +} + +@Article{ tang-yang-ku-99, + Author = {Tang, D. and Yang, J. and Yang, C. and Ku, D.N.}, + code = {fsi11}, + Journal = {J. Biomech. Engng.}, + Pages = {494-501}, + Title = {A nonlinear axisymmetric model with fluid-wall + interactions for steady viscous flow in stenotic elastic + tubes}, + Volume = {121}, + Year = {1999} +} + +###Article{ tang-yang-ku-99, + Author = {Tang, D. and Yang, J. and Yang, C. and Ku, D.N.}, + code = {fsi11}, + Journal = {J. Biomech. Engng.}, + Pages = {494-501}, + Title = {A nonlinear axisymmetric model with fluid-wall + interactions for steady viscous flow in stenotic elastic + tubes}, + Volume = {121}, + Year = {1999} +} + +@Article{ tani, + Author = {Tani, A. and Tanaka, N.}, + Journal = {Arch. Rat. Mech. Anal.}, + Number = {4}, + Pages = {303-314}, + Title = {Large-time existence of surface waves in incompressible + viscous fluids with or without surface tension}, + Volume = {130}, + Year = {1995} +} + +###Article{ tani, + Author = {Tani, A. and Tanaka, N.}, + Journal = {Arch. Rat. Mech. Anal.}, + Number = {4}, + Pages = {303-314}, + Title = {Large-time existence of surface waves in incompressible + viscous fluids with or without surface tension}, + Volume = {130}, + Year = {1995} +} + +@Article{ tani1, + Author = {Tani, A.}, + Journal = {Lect. Notes in Num. Appl. Anal.}, + Pages = {153-185}, + Title = {Global existence of incompressible viscous capillary fluid + flow in a field of external forces}, + Volume = {11}, + Year = {1991} +} + +###Article{ tani1, + Author = {Tani, A.}, + Journal = {Lect. Notes in Num. Appl. Anal.}, + Pages = {153-185}, + Title = {Global existence of incompressible viscous capillary fluid + flow in a field of external forces}, + Volume = {11}, + Year = {1991} +} + +@Article{ taouli2007ajr, + Title = {Diffusion-weighted {MRI} for quantification of liver + fibrosis: preliminary experience}, + Author = {Taouli, Bachir and Tolia, Anuj J and Losada, Mariela and + Babb, James S and Chan, Edwin S and Bannan, Michael A and + Tobias, Hillel}, + Journal = {American Journal of Roentgenology}, + Year = {2007}, + Number = {4}, + Pages = {799--806}, + Volume = {189}, + Publisher = {Am Roentgen Ray Soc} +} + +@Book{ taylor-96, + Author = {Taylor, M.E.}, + Publisher = {Springer}, + Title = {Partial Differential Equations III. Nonlinear equations}, + Year = {1996} +} + +###Book{ taylor-96, + Author = {Taylor, M.E.}, + Publisher = {Springer}, + Title = {Partial Differential Equations III. Nonlinear equations}, + Year = {1996} +} + +@Article{ taylor-hughes-zarins-98, + Author = {Taylor, C.A. and Hughes, T. J. R. and Zarins, C. K.}, + Journal = {Comput. Meth. Appl. Mech. Engrg}, + Pages = {155--196}, + Title = {Finite element modeling of blood flow in arteries}, + Volume = {158}, + Year = {1998} +} + +###Article{ taylor-hughes-zarins-98, + Author = {Taylor, C.A. and Hughes, T. J. R. and Zarins, C. K.}, + Journal = {Comput. Meth. Appl. Mech. Engrg}, + Pages = {155--196}, + Title = {Finite element modeling of blood flow in arteries}, + Volume = {158}, + Year = {1998} +} + +@Article{ taylor2013ffr, + Title = {Computational fluid dynamics applied to cardiac computed + tomography for noninvasive quantification of fractional + flow reserve: scientific basis}, + Author = {Taylor, Charles A and Fonte, Timothy A and Min, James K}, + Journal = {Journal of the American College of Cardiology}, + Volume = {61}, + Number = {22}, + Pages = {2233--2241}, + Year = {2013}, + Publisher = {Am Coll Cardio Found} +} + +@Article{ taylor_experimental_2004, + langid = {english}, + Title = {Experimental and {{Computational Methods}} in + {{Cardiovascular Fluid Mechanics}}}, + Volume = {36}, + ISSN = {0066-4189, 1545-4479}, + URL = {http://arjournals.annualreviews.org/doi/abs/10.1146%2Fannurev.fluid.36.050802.121944}, + DOI = {10.1146/annurev.fluid.36.050802.121944}, + Number = {1}, + JournalTitle = {Annual Review of Fluid Mechanics}, + URLDate = {2019-02-21}, + Year = {2004-01}, + Pages = {197-231}, + Author = {Taylor, Charles A. and Draney, Mary T.} +} + +@Article{ taylor_image-based_2010, + Title = {Image-Based Modeling of Blood Flow and Vessel Wall + Dynamics: Applications, Methods and Future Directions}, + Volume = {38}, + ShortTitle = {Image-Based Modeling of Blood Flow and Vessel Wall + Dynamics}, + Number = {3}, + JournalTitle = {Annals of biomedical engineering}, + Year = {2010}, + Pages = {1188--1203}, + Author = {Taylor, Charles A. and Steinman, David A.} +} + +@Article{ taylor_predictive_1999, + langid = {english}, + Title = {Predictive Medicine: Computational Techniques in + Therapeutic Decision-Making}, + Volume = {4}, + ISSN = {1092-9088}, + DOI = {10.1002/(SICI)1097-0150(1999)4:5<231::AID-IGS1>3.0.CO;2-Z}, + ShortTitle = {Predictive Medicine}, + Abstract = {The current paradigm for surgery planning for the + treatment of cardiovascular disease relies exclusively on + diagnostic imaging data to define the present state of the + patient, empirical data to evaluate the efficacy of prior + treatments for similar patients, and the judgement of the + surgeon to decide on a preferred treatment. The individual + variability and inherent complexity of human biological + systems is such that diagnostic imaging and empirical data + alone are insufficient to predict the outcome of a given + treatment for an individual patient. We propose a new + paradigm of predictive medicine in which the physician + utilizes computational tools to construct and evaluate a + combined anatomic/physiologic model to predict the outcome + of alternative treatment plans for an individual patient. + The predictive medicine paradigm is implemented in a + software system developed for Simulation-Based Medical + Planning. This system provides an integrated set of tools + to test hypotheses regarding the effect of alternate + treatment plans on blood flow in the cardiovascular system + of an individual patient. It combines an Internet-based + user interface developed using Java and VRML, image + segmentation, geometric solid modeling, automatic finite + element mesh generation, computational fluid dynamics, and + scientific visualization techniques. This system is applied + to the evaluation of alternate, patient-specific treatments + for a case of lower extremity occlusive cardiovascular + disease.}, + Number = {5}, + JournalTitle = {Computer Aided Surgery: Official Journal of the + International Society for Computer Aided Surgery}, + ShortJournal = {Comput. Aided Surg.}, + Year = {1999}, + Pages = {231-247}, + Author = {Taylor, C. A. and Draney, M. T. and Ku, J. P. and Parker, + D. and Steele, B. N. and Wang, K. and Zarins, C. K.}, + EPrintType = {pmid}, + EPrint = {10581521} +} + +@Article{ temam-68, + Author = {Temam, R.}, + Journal = {Bull. Soc. Math. France}, + Pages = {115--152}, + Title = {Une m{\'e}thode d'approximation de la solution des + {\'e}quations de {N}avier-{S}tokes}, + Volume = {96}, + Year = {1968} +} + +###Article{ temam-68, + Author = {Temam, R.}, + Journal = {Bull. Soc. Math. France}, + Pages = {115--152}, + Title = {Une m{\'e}thode d'approximation de la solution des + {\'e}quations de {N}avier-{S}tokes}, + Volume = {96}, + Year = {1968} +} + +@Book{ temam-79, + Author = {Temam, R.}, + Publisher = {North-Holland}, + Title = {{Navier-Stokes Equations, Theory and Numerical Analysis}}, + Year = {1979} +} + +###Book{ temam-79, + Author = {Temam, R.}, + Publisher = {North-Holland}, + Title = {{Navier-Stokes Equations, Theory and Numerical Analysis}}, + Year = {1979} +} + +@Book{ temam-88, + Author = {Temam, R.}, + Publisher = {{Springer-Verlag}}, + Title = {{Infinite-dimensional dynamical systems in mechanics and + physics}}, + Year = {1988} +} + +###Book{ temam-88, + Author = {Temam, R.}, + Publisher = {{Springer-Verlag}}, + Title = {{Infinite-dimensional dynamical systems in mechanics and + physics}}, + Year = {1988} +} + +@Book{ temam-95, + Author = {Temam, R.}, + Edition = {2d}, + Publisher = {{CBMS-NSF Regional Conference Series in Applied + Mathematics, SIAM}}, + Title = {{Navier-Stokes Equations and Nonlinear Functional + Analysis}}, + Year = {1995} +} + +###Book{ temam-95, + Author = {Temam, R.}, + Edition = {2d}, + Publisher = {{CBMS-NSF Regional Conference Series in Applied + Mathematics, SIAM}}, + Title = {{Navier-Stokes Equations and Nonlinear Functional + Analysis}}, + Year = {1995} +} + +@Article{ temam1968bsmf, + Title = {Une m{\'e}thode d'approximation de la solution des + {\'e}quations de {N}avier-{S}tokes}, + Author = {Temam, R.}, + Journal = {Bull. Soc. Math. France}, + Year = {1968}, + Pages = {115--152}, + Volume = {96}, + Keywords = {Navier-Stokes} +} + +@Article{ temam1968methode, + Title = {Une m{\'e}thode d'approximation de la solution des + {\'e}quations de Navier-Stokes}, + Author = {Temam, Roger}, + Journal = {Bulletin de la Soci{\'e}t{\'e} Math{\'e}matique de France}, + Volume = {96}, + Pages = {115--152}, + Year = {1968} +} + +###Article{ temam1968methode, + Title = {Une m{\'e}thode d'approximation de la solution des + {\'e}quations de Navier-Stokes}, + Author = {Temam, Roger}, + Journal = {Bulletin de la Soci{\'e}t{\'e} Math{\'e}matique de France}, + Volume = {96}, + Pages = {115--152}, + Year = {1968} +} + +@Article{ temam69-1, + Author = "Temam, R.", + Title = "{Sur l'approximation de la solution des equations de + Navier-Stokes par la m\'{e}thode des pas fractionaires I}", + Journal = {Arch. Rational Mech. Anal.}, + fjournal = {Archive for Rational Mechanics and Analysis}, + Volume = "32", + Pages = "135--153", + Year = "1969" +} + +###Article{ temam69-1, + Author = "Temam, R.", + Title = "{Sur l'approximation de la solution des equations de + Navier-Stokes par la m\'{e}thode des pas fractionaires I}", + Journal = {Arch. Rational Mech. Anal.}, + fjournal = {Archive for Rational Mechanics and Analysis}, + Volume = "32", + Pages = "135--153", + Year = "1969" +} + +@Article{ temam69-2, + Author = "Temam, R.", + Title = "{Sur l'approximation de la solution des equations de + Navier-Stokes par la m\'{e}thode des pas fractionaires II}", + Journal = {Arch. Rational Mech. Anal.}, + fjournal = {Archive for Rational Mechanics and Analysis}, + Volume = "32", + Pages = "377--385", + Year = "1969" +} + +###Article{ temam69-2, + Author = "Temam, R.", + Title = "{Sur l'approximation de la solution des equations de + Navier-Stokes par la m\'{e}thode des pas fractionaires II}", + Journal = {Arch. Rational Mech. Anal.}, + fjournal = {Archive for Rational Mechanics and Analysis}, + Volume = "32", + Pages = "377--385", + Year = "1969" +} + +@Book{ temam_navier-stokes_2001, + Title = {Navier-{{Stokes}} Equations: Theory and Numerical + Analysis}, + ShortTitle = {Navier-{{Stokes}} Equations}, + Author = {Temam, Roger}, + Year = {2001}, + Volume = {343}, + Publisher = {{American Mathematical Soc.}} +} + +@InCollection{ teshukov-99, + Address = {Basel}, + Author = {Teshukov, V. M.}, + BookTitle = {Hyperbolic problems: theory, numerics, applications, Vol. + II (Z{\"u}rich, 1998)}, + Pages = {953--962}, + Publisher = {Birkh{\"a}user}, + Series = {Internat. Ser. Numer. Math., 130}, + Title = {The {R}iemann problem for the integrodifferential + equations of the shallow water theory}, + Year = {1999} +} + +###InCollection{ teshukov-99, + Address = {Basel}, + Author = {Teshukov, V. M.}, + BookTitle = {Hyperbolic problems: theory, numerics, applications, Vol. + II (Z{\"u}rich, 1998)}, + Pages = {953--962}, + Publisher = {Birkh{\"a}user}, + Series = {Internat. Ser. Numer. Math., 130}, + Title = {The {R}iemann problem for the integrodifferential + equations of the shallow water theory}, + Year = {1999} +} + +@Article{ tezduyar-01, + Author = {Tezduyar, T.E.}, + Journal = {Arch. Comput. Methods Engrg.}, + Pages = {83--130}, + Title = {Finite Element Methods for Fluid Dynamics with Moving + Boundaries and Interfaces}, + Volume = {8}, + Year = {2001} +} + +###Article{ tezduyar-01, + Author = {Tezduyar, T.E.}, + Journal = {Arch. Comput. Methods Engrg.}, + Pages = {83--130}, + Title = {Finite Element Methods for Fluid Dynamics with Moving + Boundaries and Interfaces}, + Volume = {8}, + Year = {2001} +} + +@Article{ thenappan2016critical, + Title = {The critical role of pulmonary arterial compliance in + pulmonary hypertension}, + Author = {Thenappan, Thenappan and Prins, Kurt W and Pritzker, Marc + R and Scandurra, John and Volmers, Karl and Weir, E + Kenneth}, + Journal = {Annals of the American Thoracic Society}, + Volume = {13}, + Number = {2}, + Pages = {276--284}, + Year = {2016}, + Publisher = {American Thoracic Society} +} + +@Article{ thiriet-martin-borret-hecht-96, + Annote = {hemodynamics, non newtonian}, + Author = {Thiriet, M. and Martin-Borret, G. and Hecht, F.}, + code = {hemo}, + Journal = {J. Phys III France}, + Pages = {529-542}, + Title = {Ecoulement rh{\'e}ofluidifiant dans un coude et une + bifurcation plane sym{\'e}trique. Application {\`a} + l'{\'e}coulement sanguin dans la grande circulation}, + Volume = {6}, + Year = {1996} +} + +###Article{ thiriet-martin-borret-hecht-96, + Annote = {hemodynamics, non newtonian}, + Author = {Thiriet, M. and Martin-Borret, G. and Hecht, F.}, + code = {hemo}, + Journal = {J. Phys III France}, + Pages = {529-542}, + Title = {Ecoulement rh{\'e}ofluidifiant dans un coude et une + bifurcation plane sym{\'e}trique. Application {\`a} + l'{\'e}coulement sanguin dans la grande circulation}, + Volume = {6}, + Year = {1996} +} + +@Book{ thom06, + Address = {Berlin}, + Author = {Thom{\'e}e, V.}, + Edition = {Second}, + Publisher = {Springer-Verlag}, + Series = {Springer Series in Computational Mathematics}, + Title = {Galerkin finite element methods for parabolic problems}, + Volume = {25}, + Year = {2006} +} + +###Book{ thom06, + Address = {Berlin}, + Author = {Thom{\'e}e, V.}, + Edition = {Second}, + Publisher = {Springer-Verlag}, + Series = {Springer Series in Computational Mathematics}, + Title = {Galerkin finite element methods for parabolic problems}, + Volume = {25}, + Year = {2006} +} + +@Article{ thomas-trujillo-99, + Author = {Thomas, J.-M. and Trujillo, D.}, + code = {por13}, + fjournal = {International Journal for Numerical Methods in + Engineering}, + Journal = {Internat. J. Numer. Methods Engrg.}, + Note = {Fourth World Congress on Computational Mechanics (Buenos + Aires, 1998)}, + Number = {9}, + Pages = {1351--1366}, + Title = {Mixed finite volume methods}, + Volume = {46}, + Year = {1999} +} + +###Article{ thomas-trujillo-99, + Author = {Thomas, J.-M. and Trujillo, D.}, + code = {por13}, + fjournal = {International Journal for Numerical Methods in + Engineering}, + Journal = {Internat. J. Numer. Methods Engrg.}, + Note = {Fourth World Congress on Computational Mechanics (Buenos + Aires, 1998)}, + Number = {9}, + Pages = {1351--1366}, + Title = {Mixed finite volume methods}, + Volume = {46}, + Year = {1999} +} + +@Book{ thomee-06, + Author = {Thom{\'e}e, V.}, + Title = {Galerkin finite element methods for parabolic problems}, + Series = {Springer Series in Computational Mathematics}, + Volume = {25}, + Edition = {Second}, + Publisher = {Springer-Verlag}, + Address = {Berlin}, + Year = {2006} +} + +###Book{ thomee-06, + Author = {Thom{\'e}e, V.}, + Title = {Galerkin finite element methods for parabolic problems}, + Series = {Springer Series in Computational Mathematics}, + Volume = {25}, + Edition = {Second}, + Publisher = {Springer-Verlag}, + Address = {Berlin}, + Year = {2006} +} + +@Article{ thygesen2007jacc, + Title = {Universal Definition of Myocardial Infarction}, + Author = {Thygesen, Kristian and Alpert, Joseph S. and White, Harvey + D.}, + Journal = {Journal of the American College of Cardiology}, + Year = {2007}, + Number = {22}, + Pages = {2173-2195}, + Volume = {50}, + DOI = {10.1016/j.jacc.2007.09.011}, + EPrint = {/data/Journals/JAC/23108/09011.pdf}, + File = {thygesen07.pdf:thygesen07.pdf:PDF}, + timestamp = {2015/09/11}, + URL = { + http://dx.doi.org/10.1016/j.jacc.2007.09.011} +} + +@Article{ tiago_patient-specific_2014, + Title = {Patient-Specific Blood Flow Simulations: Setting + {{Dirichlet}} Boundary Conditions for Minimal Error with + Respect to Measured Data}, + Volume = {9}, + ShortTitle = {Patient-Specific Blood Flow Simulations}, + Number = {6}, + JournalTitle = {Mathematical Modelling of Natural Phenomena}, + Year = {2014}, + Pages = {98--116}, + Author = {Tiago, Jorge and Gambaruto, Alberto and Sequeira, Adelia} +} + +@Article{ tiago_velocity_2017, + langid = {english}, + Title = {A Velocity Tracking Approach for the Data Assimilation + Problem in Blood Flow Simulations}, + Volume = {33}, + ISSN = {2040-7947}, + URL = {https://onlinelibrary.wiley.com/doi/abs/10.1002/cnm.2856}, + DOI = {10.1002/cnm.2856}, + Abstract = {Several advances have been made in data assimilation + techniques applied to blood flow modeling. Typically, + idealized boundary conditions, only verified in straight + parts of the vessel, are assumed. We present a general + approach, on the basis of a Dirichlet boundary control + problem, that may potentially be used in different parts of + the arterial system. The relevance of this method appears + when computational reconstructions of the 3D domains, prone + to be considered sufficiently extended, are either not + possible, or desirable, because of computational costs. On + the basis of taking a fully unknown velocity profile as the + control, the approach uses a discretize then optimize + methodology to solve the control problem numerically. The + methodology is applied to a realistic 3D geometry + representing a brain aneurysm. The results show that this + data assimilation approach may be preferable to a pressure + control strategy and that it can significantly improve the + accuracy associated to typical solutions obtained using + idealized velocity profiles.}, + Number = {10}, + JournalTitle = {International Journal for Numerical Methods in Biomedical + Engineering}, + URLDate = {2019-02-20}, + Year = {2017}, + Pages = {e2856}, + Author = {Tiago, J. and Guerra, T. and Sequeira, A.} +} + +@Article{ tian, + Author = {Tian-Xiao Zhou and Min-Fu Feng}, + Journal = {Math. of Comp.}, + Number = {202}, + Pages = {531-543}, + Title = {{A least squares Petrov-Galerkin finite element method for + the stationary Navier-Stokes equations}}, + Volume = {60}, + Year = {1993} +} + +###Article{ tian, + Author = {Tian-Xiao Zhou and Min-Fu Feng}, + Journal = {Math. of Comp.}, + Number = {202}, + Pages = {531-543}, + Title = {{A least squares Petrov-Galerkin finite element method for + the stationary Navier-Stokes equations}}, + Volume = {60}, + Year = {1993} +} + +@Article{ timmermans-minev-vandevosse-96, + Title = {{An approximate projection scheme for incompressible flow + using spectral elements}}, + Author = "Timmermans, L.~J.~P. and Minev, P.~D. and Van De Vosse, + F.~N.", + Journal = ijnmf, + Volume = {22}, + Number = {7}, + Pages = {673--688}, + Year = {1996}, + Publisher = {Chichester; New York: Wiley, c1981-} +} + +###Article{ timmermans-minev-vandevosse-96, + Title = {{An approximate projection scheme for incompressible flow + using spectral elements}}, + Author = "Timmermans, L.~J.~P. and Minev, P.~D. and Van De Vosse, + F.~N.", + Journal = ijnmf, + Volume = {22}, + Number = {7}, + Pages = {673--688}, + Year = {1996}, + Publisher = {Chichester; New York: Wiley, c1981-} +} + +@Article{ timmermans1996approximate, + Title = {An approximate projection scheme for incompressible flow + using spectral elements}, + Author = {Timmermans, LJP and Minev, PD and Van De Vosse, FN}, + Journal = {International journal for numerical methods in fluids}, + Volume = {22}, + Number = {7}, + Pages = {673--688}, + Year = {1996}, + Publisher = {Wiley Online Library} +} + +@PhdThesis{ tinkl2014phd, + Title = {Towards a predictive computational growth model for + aneurysms}, + Author = {Tinkl, Susanna}, + School = {Technische Universit\"at M\"unchen}, + Year = {2014}, + File = {:tinkl14.pdf:PDF}, + owner = {pfaller}, + timestamp = {2014/12/01} +} + +@Article{ tippett_ensemble_2003, + langid = {english}, + Title = {Ensemble {{Square Root Filters}}*}, + Volume = {131}, + ISSN = {0027-0644, 1520-0493}, + URL = {http://journals.ametsoc.org/doi/abs/10.1175/1520-0493%282003%29131%3C1485%3AESRF%3E2.0.CO%3B2}, + DOI = {10.1175/1520-0493(2003)131<1485:ESRF>2.0.CO;2}, + Number = {7}, + JournalTitle = {Monthly Weather Review}, + URLDate = {2019-02-27}, + Year = {2003-07}, + Pages = {1485-1490}, + Author = {Tippett, Michael K. and Anderson, Jeffrey L. and Bishop, + Craig H. and Hamill, Thomas M. and Whitaker, Jeffrey S.} +} + +@InProceedings{ tobar2015learning, + Title = {Learning Stationary Time Series using Gaussian Processes + with Nonparametric Kernels}, + Author = {Tobar, F. and Bui, T. and Turner, R.}, + BookTitle = {Neural Information Processing Systems 28}, + Year = {2015} +} + +@InProceedings{ tobar2015modelling, + Title = {Modelling of Complex Signals Using Gaussian Processes}, + Author = {Tobar, Felipe and Turner, Richard E}, + BookTitle = {IEEE ICASSP}, + Year = {2015} +} + +@Article{ tobiska-verurth-96, + Author = {Tobiska, L. and Verf{\"u}rth, R.}, + Journal = {SIAM J. Numer. Anal.}, + Number = {1}, + Pages = {107--127}, + Title = {Analysis of a streamline diffusion finite element method + for the {S}tokes and {N}avier-{S}tokes equations}, + Volume = {33}, + Year = {1996} +} + +###Article{ tobiska-verurth-96, + Author = {Tobiska, L. and Verf{\"u}rth, R.}, + Journal = {SIAM J. Numer. Anal.}, + Number = {1}, + Pages = {107--127}, + Title = {Analysis of a streamline diffusion finite element method + for the {S}tokes and {N}avier-{S}tokes equations}, + Volume = {33}, + Year = {1996} +} + +@Article{ tobon-gomez_understanding_2013, + Title = {Understanding the mechanisms amenable to {CRT} response: + from pre-operative multimodal image data to + patient-specific computational models}, + Author = {Tobon-Gomez, C. and Duchateau, N. and Sebastian, R. and + Marchesseau, S. and Camara, O. and Donal, E. and De Craene, + M. and Pashaei, A. and Relan, J. and Steghofer, M. and + Lamata, P. and Delingette, H. and Duckett, S. and Garreau, + M. and Hernandez, A. and Rhode, K.S. and Sermesant, M. and + Ayache, N. and Leclercq, C. and Razavi, R. and Smith, N.P. + and Frangi, A.F.}, + Journal = {Medical \& Biological Engineering \& Computing}, + Year = {2013}, + Month = nov, + Number = {11}, + Pages = {1235--1250}, + Volume = {51}, + DOI = {10.1007/s11517-013-1044-7}, + File = {Tobon2012.pdf:/home/hoermann/.zotero/zotero/krpbc0h6.default/zotero/storage/NH3Z9MSU/Tobon2012.pdf:application/pdf}, + ISSN = {0140-0118, 1741-0444}, + Language = {en}, + ShortTitle = {Understanding the mechanisms amenable to {CRT} response}, + URL = {http://link.springer.com/10.1007/s11517-013-1044-7}, + URLDate = {2014-11-27} +} + +@Article{ toro2002aoco, + Title = {Long-term follow-up of patients after coarctation of the + aorta repair}, + Author = {Toro-Salazar, Olga H and Steinberger, Julia and Thomas, + William and Rocchini, Albert P and Carpenter, Becky and + Moller, James H}, + Journal = {The American journal of cardiology}, + Volume = {89}, + Number = {5}, + Pages = {541--547}, + Year = {2002}, + Publisher = {Elsevier} +} + +@Article{ toro2002coao, + Title = {Long-term follow-up of patients after coarctation of the + aorta repair}, + Author = {Toro-Salazar, Olga H and Steinberger, Julia and Thomas, + William and Rocchini, Albert P and Carpenter, Becky and + Moller, James H}, + Journal = {The American journal of cardiology}, + Volume = {89}, + Number = {5}, + Pages = {541--547}, + Year = {2002}, + Publisher = {Elsevier} +} + +@Article{ torrey1956physrev, + Title = {Bloch Equations with Diffusion Terms}, + Author = {Torrey, H. C.}, + Journal = {Physical Review}, + Year = {1956}, + Month = nov, + Number = {3}, + Pages = {563--565}, + Volume = {104}, + Abstract = {The phenomenological Bloch equations in nuclear magnetic + resonance are generalized by the addition of terms due to + the transfer of magnetization by diffusion. The revised + equations describe phenomena under conditions of + inhomogeneity in magnetic field, relaxation rates, or + initial magnetization. As an example the equations are + solved in the case of the free precession of magnetic + moment in the presence of an inhomogeneous magnetic field + following the application of a 90{\textdegree} pulse with + subsequent applications of a succession of 180{\textdegree} + pulses. The spin-echo amplitudes agree with the results of + Carr and Purcell from a random walk theory.}, + DOI = {10.1103/PhysRev.104.563}, + owner = {david}, + timestamp = {2015-05-05 20:18:11}, + URL = {http://link.aps.org/doi/10.1103/PhysRev.104.563}, + URLDate = {2015-05-05} +} + +@InCollection{ toussaint-etal-10, + Year = {2010}, + ISBN = {978-3-642-15704-2}, + BookTitle = {Medical Image Computing and Computer-Assisted Intervention + – MICCAI 2010}, + Volume = {6361}, + Series = {Lecture Notes in Computer Science}, + Editor = {Jiang, Tianzi and Navab, Nassir and Pluim, JosienP.W. and + Viergever, MaxA.}, + Title = {In vivo Human {3D} Cardiac Fibre Architecture: + Reconstruction Using Curvilinear Interpolation of Diffusion + Tensor Images}, + Publisher = {Springer Berlin Heidelberg}, + Author = {Toussaint, N. and Sermesant, M. and Stoeck, C.T. and + Kozerke, S. and Batchelor, P.G.}, + Pages = {418-425} +} + +@Article{ toussaint-etal-2013, + Title = {In vivo human cardiac fibre architecture estimation using + shape-based diffusion tensor processing}, + Journal = {Medical Image Analysis}, + Volume = {17}, + Number = {8}, + Pages = {1243 - 1255}, + Year = {2013}, + Note = {}, + ISSN = {1361-8415}, + Author = {N. Toussaint and C. T. Stoeck and T. Schaeffter and S. + Kozerke and M. Sermesant and P.G. Batchelor}, + Keywords = {Prolate spheroidal coordinates } +} + +@Article{ toussaint2010miccai, + Title = {In vivo human 3D cardiac fibre architecture: + reconstruction using curvilinear interpolation of diffusion + tensor images.}, + Author = {Toussaint, Nicolas and Sermesant, Maxime and Stoeck, + Christian T. and Kozerke, Sebastian and Batchelor, Philip + G.}, + Journal = {Med Image Comput Comput Assist Interv}, + Year = {2010}, + Number = {Pt 1}, + Pages = {418--425}, + Volume = {13}, + Abstract = {In vivo imaging of the cardiac 3D fibre architecture is + still a challenge, but it would have many clinical + applications, for instance to better understand pathologies + and to follow up remodelling after therapy. Recently, + cardiac MRI enabled the acquisition of Diffusion Tensor + images (DTI) of 2D slices. We propose a method for the + complete 3D reconstruction of cardiac fibre architecture in + the left ventricular myocardium from sparse in vivo DTI + slices. This is achieved in two steps. First we map + non-linearly the left ventricular geometry to a truncated + ellipsoid. Second, we express coordinates and tensor + components in Prolate Spheroidal System, where an + anisotropic Gaussian kernel regression interpolation is + performed. The framework is initially applied to a + statistical cardiac DTI atlas in order to estimate the + optimal anisotropic bandwidths. Then, it is applied to in + vivo beating heart DTI data sparsely acquired on a healthy + subject. Resulting in vivo tensor field shows good + correlation with literature, especially the elevation + (helix) angle transmural variation. To our knowledge, this + is the first reconstruction of in vivo human 3D cardiac + fibre structure. Such approach opens up possibilities in + terms of analysis of the fibre architecture in patients.}, + Institution = {King's College London, Imaging Sciences, London, UK. + nicolas.toussaint@kcl.ac.uk}, + Keywords = {Algorithms; Diffusion Magnetic Resonance Imaging, methods; + Heart Ventricles, cytology; Humans; Image Enhancement, + methods; Image Interpretation, Computer-Assisted, methods; + Imaging, Three-Dimensional, methods; Pattern Recognition, + Automated, methods; Reproducibility of Results; Sensitivity + and Specificity; Subtraction Technique}, + Language = {eng}, + medline-pst = {ppublish}, + owner = {stoeckc}, + pmid = {20879258}, + timestamp = {2015.07.24} +} + +@TechReport{ trompert-hansen-99, + Annote = {mhd, dynamo, finite volume}, + Author = {Trompert, R. A. and Hansen, U.}, + code = {mhd22}, + Institution = {Utrecht Univ.}, + Title = {A code for the simulation of dynamos in a strongly + rotating incompressible fluid}, + Year = {1999} +} + +###TechReport{ trompert-hansen-99, + Annote = {mhd, dynamo, finite volume}, + Author = {Trompert, R. A. and Hansen, U.}, + code = {mhd22}, + Institution = {Utrecht Univ.}, + Title = {A code for the simulation of dynamos in a strongly + rotating incompressible fluid}, + Year = {1999} +} + +@Article{ tseng2003, + Title = {Diffusion tensor MRI of myocardial fibers and sheets: + Correspondence with visible cut-face texture}, + Author = {Tseng, W.-Y. I. and Wedeen, V. J. and Reese, T. G. and + Smith, R. N. and Halpern, E. F.}, + Journal = {Journal of Magnetic Resonance Imaging}, + Volume = {17}, + Number = {1}, + Pages = {31--42}, + Year = {2003}, + Publisher = {Wiley Online Library} +} + +@Article{ tuan-pham-verron-roubaud-98, + Title = {A singular evolutive extended Kalman filter for data + assimilation in oceanography}, + Author = {Tuan Pham, D. and Verron, J. and Christine Roubaud, M.}, + Journal = {Journal of Marine systems}, + Volume = {16}, + Number = {3-4}, + Pages = {323--340}, + Year = {1998}, + Publisher = {Elsevier} +} + +###Article{ tuan-pham-verron-roubaud-98, + Title = {A singular evolutive extended Kalman filter for data + assimilation in oceanography}, + Author = {Tuan Pham, D. and Verron, J. and Christine Roubaud, M.}, + Journal = {Journal of Marine systems}, + Volume = {16}, + Number = {3-4}, + Pages = {323--340}, + Year = {1998}, + Publisher = {Elsevier} +} + +@Article{ turkel-fiterman-van-leer-93, + Author = {Turkel, E. and Fiterman, A. and van Leer, B.}, + Journal = {ICASE Report}, + Title = {Preconditionning and the limit to the incompressible flow + equations}, + Volume = {93-42}, + Year = {1993} +} + +###Article{ turkel-fiterman-van-leer-93, + Author = {Turkel, E. and Fiterman, A. and van Leer, B.}, + Journal = {ICASE Report}, + Title = {Preconditionning and the limit to the incompressible flow + equations}, + Volume = {93-42}, + Year = {1993} +} + +@Article{ tyszka_three-dimensional_2000, + Title = {Three-Dimensional, Time-Resolved ({{4D}}) Relative + Pressure Mapping Using Magnetic Resonance Imaging}, + Volume = {12}, + Number = {2}, + JournalTitle = {Journal of Magnetic Resonance Imaging: An Official Journal + of the International Society for Magnetic Resonance in + Medicine}, + Year = {2000}, + Pages = {321--329}, + Author = {Tyszka, J. Michael and Laidlaw, David H. and Asa, Joseph + W. and Silverman, Jeffrey M.} +} + +@InCollection{ tzavaras-00, + Author = {Tzavaras, A. E.}, + BookTitle = {Advances in Math. Fluid Mechanics}, + Editor = {Malek, J. and Necas, J. and Rokyta, M. }, + Pages = {192-222}, + Publisher = {Springer}, + Title = {On the mathematical theory of fluid dynamic limits to + conservation laws}, + Year = {2000} +} + +###InCollection{ tzavaras-00, + Author = {Tzavaras, A. E.}, + BookTitle = {Advances in Math. Fluid Mechanics}, + Editor = {Malek, J. and Necas, J. and Rokyta, M. }, + Pages = {192-222}, + Publisher = {Springer}, + Title = {On the mathematical theory of fluid dynamic limits to + conservation laws}, + Year = {2000} +} + +@Article{ ubbink2006mia, + Title = {Towards model-based analysis of cardiac \{MR\} tagging + data: Relation between left ventricular shear strain and + myofiber orientation }, + Author = {S.W.J. Ubbink and P.H.M. Bovendeerd and T. Delhaas and T. + Arts and F.N. van de Vosse}, + Journal = {Medical Image Analysis }, + Year = {2006}, + Note = {Special Issue on Functional Imaging and Modelling of the + Heart (FIMH 2005) }, + Number = {4}, + Pages = {632 - 641}, + Volume = {10}, + Abstract = {Many cardiac pathologies are reflected in abnormal + myocardial deformation, accessible through magnetic + resonance tagging (MRT). Interpretation of the \{MRT\} data + is difficult, since the relation between pathology and + deformation is not straightforward. Mathematical models of + cardiac mechanics could be used to translate measured + abnormalities into the underlying pathology, but, so far, + they even fail to correctly simulate myocardial deformation + in the healthy heart. In this study we investigated to what + extent (1) our previously published three-dimensional + finite element model of cardiac mechanics [Kerckhoffs, + R.C.P., Bovendeerd, P.H.M., Kotte, J.C.S., Prinzen, F.W., + Smits, K., Arts, T., 2003. Homogeneity of cardiac + contraction despite physiological asynchrony of + depolarization: a model study. Ann. Biomed. Eng. 31, + 536?547] can simulate measured cardiac deformation, and (2) + discrepancies between strains in model and experiment are + related to the choice of the myofiber orientation in the + model. To this end, we measured midwall circumferential + strain Ecc and circumferential-radial shear strain Ecr in + three healthy subjects using MRT. Ecc as computed in the + model agreed well with measured Ecc. Computed Ecr differed + significantly from measured Ecr. The time course of Ecr was + found to be very sensitive to the choice of the myofiber + orientation, in particular to the choice of the transverse + angle. Discrepancies between circumferential-radial shear + strain in model and experiment were reduced strongly by + increasing the transverse angle in the original model by + 25%. }, + DOI = {http://dx.doi.org/10.1016/j.media.2006.04.001}, + File = {ubbink06.pdf:ubbink06.pdf:PDF}, + ISSN = {1361-8415}, + Keywords = {Magnetic resonance tagging}, + timestamp = {2015/09/22}, + URL = {http://www.sciencedirect.com/science/article/pii/S1361841506000326} +} + +@Article{ uniaxial-holzapfel-06, + Author = {Holzapfel, G.A.}, + Title = {Determination of material models for arterial walls from + uniaxial extension tests and histological structure.}, + Journal = {Journal of Theoretical Biology}, + Volume = {238}, + Year = {2006}, + Number = {2}, + Pages = {290-302}, + pubmedid = {16043190}, + ISSN = {0022-5193} +} + +###Article{ uniaxial-holzapfel-06, + Author = {Holzapfel, G.A.}, + Title = {Determination of material models for arterial walls from + uniaxial extension tests and histological structure.}, + Journal = {Journal of Theoretical Biology}, + Volume = {238}, + Year = {2006}, + Number = {2}, + Pages = {290-302}, + URL = {http://www.biomedsearch.com/nih/Determination-material-models-arterial-walls/16043190.html}, + pubmedid = {16043190}, + ISSN = {0022-5193} +} + +@Article{ urbina2016phantom, + Author = {Urbina, J. and Sotelo, J. and Springmuller, D. and + Montalba, C. and Letelier, K. and Tejos, C. and + Irarrazaval, P. and Andia, M. and Razavi, R. and Valverde, + I. and Uribe, S.}, + Title = {Realistic aortic phantom to study hemodynamics using MRI + and cardiac catheterization in normal and aortic + coarctation conditions}, + Journal = {Journal of Magnetic Resonance Imaging}, + ISSN = {1522-2586}, + URL = {http://dx.doi.org/10.1002/jmri.25208}, + DOI = {10.1002/jmri.25208}, + Volume = {44}, + Number = {3}, + Pages = {683--697}, + Year = {2016} +} + +@Article{ urbina_realistic_2016, + Title = {Realistic Aortic Phantom to Study Hemodynamics Using + {{MRI}} and Cardiac Catheterization in Normal and Aortic + Coarctation Conditions}, + Author = {Urbina, Jes{\'u}s and Sotelo, Julio A. and + Springm{\"u}ller, Daniel and Montalba, Cristian and + Letelier, Karis and Tejos, Cristi{\'a}n and + Irarr{\'a}zaval, Pablo and Andia, Marcelo E. and Razavi, + Reza and Valverde, Israel}, + Year = {2016}, + Volume = {44}, + Pages = {683--697}, + Journal = {Journal of Magnetic Resonance Imaging}, + Number = {3} +} + +@Article{ urchuk_mr_1994, + Title = {{{MR}} Measurement of Pulsatile Pressure Gradients}, + Volume = {4}, + Number = {6}, + JournalTitle = {Journal of magnetic resonance imaging}, + Year = {1994}, + Pages = {829--836}, + Author = {Urchuk, Steven N. and Plewes, Donald B.} +} + +@Article{ uribe-beerbaum-etal-09, + Author = {Uribe, S. and Beerbaum, P. and S\o{}rensen, T. and + Rasmusson, A. and Razavi, R. and Schaeffter, T.}, + Title = {Four-dimensional (4D) flow of the whole heart and great + vessels using real-time respiratory self-gating}, + Journal = {Magnetic Resonance in Medicine}, + Volume = {62}, + Number = {4}, + Publisher = {Wiley Subscription Services, Inc., A Wiley Company}, + ISSN = {1522-2594}, + DOI = {10.1002/mrm.22090}, + Pages = {984--992}, + Keywords = {4D flow imaging, whole heart, self-gating, Hemodynamic + assessment, congenital heart disease}, + Year = {2009} +} + +###Article{ uribe-beerbaum-etal-09, + Author = {Uribe, S. and Beerbaum, P. and S\o{}rensen, T. and + Rasmusson, A. and Razavi, R. and Schaeffter, T.}, + Title = {Four-dimensional (4D) flow of the whole heart and great + vessels using real-time respiratory self-gating}, + Journal = {Magnetic Resonance in Medicine}, + Volume = {62}, + Number = {4}, + Publisher = {Wiley Subscription Services, Inc., A Wiley Company}, + ISSN = {1522-2594}, + URL = {http://dx.doi.org/10.1002/mrm.22090}, + DOI = {10.1002/mrm.22090}, + Pages = {984--992}, + Keywords = {4D flow imaging, whole heart, self-gating, Hemodynamic + assessment, congenital heart disease}, + Year = {2009} +} + +@InProceedings{ urquiza-venere-clara-feijoo-00, + Address = {Barcelona}, + Author = {Urquiza, S.A. and Venere, M.J. and Clara, F.M. and + Feij{\'o}o, R.A.}, + BookTitle = {ECCOMAS}, + Title = {Finite element (one-dimensional) haemodynamic model of the + human arterial system}, + Year = {2000} +} + +###InProceedings{ urquiza-venere-clara-feijoo-00, + Address = {Barcelona}, + Author = {Urquiza, S.A. and Venere, M.J. and Clara, F.M. and + Feij{\'o}o, R.A.}, + BookTitle = {ECCOMAS}, + Title = {Finite element (one-dimensional) haemodynamic model of the + human arterial system}, + Year = {2000} +} + +@Article{ urquiza2014weak, + Title = {Weak imposition of the slip boundary condition on curved + boundaries for Stokes flow}, + Author = {Urquiza, Jos{\'e} M and Garon, Andr{\'e} and Farinas, + Marie-Isabelle}, + Journal = {Journal of Computational Physics}, + Volume = {256}, + Pages = {748--767}, + Year = {2014}, + Publisher = {Elsevier} +} + +@Article{ urquizablanco_2006, + Author = "Urquiza, S.~A. and Blanco, P.~J. and V\'ene`re, M.~J. and + Feij\'oo, R.~A.", + Title = "Multidimensional modelling for the carotid artery blood + ßow", + Journal = "Comput. Methods Appl. Mech. Engrg.", + Volume = "195", + Pages = "4002--4017", + Year = "2006" +} + +###Article{ urquizablanco_2006, + Author = "Urquiza, S.~A. and Blanco, P.~J. and V\'ene`re, M.~J. and + Feij\'oo, R.~A.", + Title = "Multidimensional modelling for the carotid artery blood + ßow", + Journal = "Comput. Methods Appl. Mech. Engrg.", + Volume = "195", + Pages = "4002--4017", + Year = "2006" +} + +@Article{ utz1987aajr, + Title = {Cine MR determination of left ventricular ejection + fraction.}, + Author = {Utz, J. A. and Herfkens, R. J. and Heinsimer, J. A. and + Bashore, T. and Califf, R. and Glover, G. and Pelc, N. and + Shimakawa, A.}, + Journal = {AJR Am J Roentgenol}, + Year = {1987}, + Month = {May}, + Number = {5}, + Pages = {839--843}, + Volume = {148}, + Abstract = {Cine MR imaging provides tomographic images of the heart + with both high spatial and high temporal resolution. As + many as 32 images per cardiac cycle can be acquired with up + to four separate anatomic slices and a total imaging time + of 128 cardiac cycles. End-diastolic and end-systolic + volumes were determined in 11 patients, and ejection + fractions were calculated. The results correlated linearly + with those from cardiac catheterization (correlation + coefficient of .88). We conclude that cine MR imaging can + be used to obtain quantitative information about the heart + and has the potential to become a valuable noninvasive + means of cardiac evaluation.}, + DOI = {10.2214/ajr.148.5.839}, + Keywords = {Cardiac Catheterization; Evaluation Studies as Topic; + Heart Ventricles, radiography; Humans; Magnetic Resonance + Spectroscopy, diagnostic use/methods; Motion Pictures as + Topic; Myocardium, pathology; Stroke Volume}, + Language = {eng}, + medline-pst = {ppublish}, + owner = {stoeckc}, + pmid = {3495115}, + timestamp = {2015.07.24}, + URL = {http://dx.doi.org/10.2214/ajr.148.5.839} +} + +@Article{ vadakkumpadan2012image, + Title = {Image-based estimation of ventricular fiber orientations + for personalized modeling of cardiac electrophysiology}, + Author = {Vadakkumpadan, Fijoy and Arevalo, Hermenegild and + Ceritoglu, Can and Miller, Michael and Trayanova, Natalia}, + Journal = {Medical Imaging, IEEE Transactions on}, + Volume = {31}, + Number = {5}, + Pages = {1051--1060}, + Year = {2012}, + Publisher = {IEEE} +} + +@Article{ vadakkumpadan2013patient, + Title = {Patient-specific modeling of the heart: estimation of + ventricular fiber orientations}, + Author = {Vadakkumpadan, Fijoy and Arevalo, Hermenegild and + Trayanova, Natalia A}, + Journal = {Journal of visualized experiments}, + Number = {71}, + Year = {2013}, + Publisher = {NIH Public Access} +} + +@Article{ vahanian2012eurheartj, + Author = { Vahanian, Alec and Alfieri, Ottavio and Andreotti, + Felicita and Antunes, Manuel J. and Bar{\'o}n-Esquivias, + Gonzalo and Baumgartner, Helmut and Borger, Michael Andrew + and Carrel, Thierry P. and De Bonis, Michele and + Evangelista, Arturo and Falk, Volkmar and Iung, Bernard and + Lancellotti, Patrizio and Pierard, Luc and Price, Susanna + and Sch{\"a}fers, Hans-Joachim and Schuler, Gerhard and + Stepinska, Janina and Swedberg, Karl and Takkenberg, + Johanna and Von Oppell, Ulrich Otto and Windecker, Stephan + and Zamorano, Jose Luis and Zembala, Marian and , and Bax, + Jeroen J. and Baumgartner, Helmut and Ceconi, Claudio and + Dean, Veronica and Deaton, Christi and Fagard, Robert and + Funck-Brentano, Christian and Hasdai, David and Hoes, Arno + and Kirchhof, Paulus and Knuuti, Juhani and Kolh, Philippe + and McDonagh, Theresa and Moulin, Cyril and Popescu, Bogdan + A. and Reiner, {\v Z}eljko and Sechtem, Udo and Sirnes, Per + Anton and Tendera, Michal and Torbicki, Adam and Vahanian, + Alec and Windecker, Stephan and , and Popescu, Bogdan A. + and Von Segesser, Ludwig and Badano, Luigi P. and Bunc, + Matja{\v z} and Claeys, Marc J. and Drinkovic, Niksa and + Filippatos, Gerasimos and Habib, Gilbert and Kappetein, A. + Pieter and Kassab, Roland and Lip, Gregory Y.H. and Moat, + Neil and Nickenig, Georg and Otto, Catherine M. and Pepper, + John and Piazza, Nicolo and Pieper, Petronella G. and + Rosenhek, Raphael and Shuka, Naltin and Schwammenthal, Ehud + and Schwitter, Juerg and Mas, Pilar Tornos and Trindade, + Pedro T. and Walther, Thomas}, + Title = {Guidelines on the management of valvular heart disease + (version 2012)}, + Volume = {33}, + Number = {19}, + Pages = {2451--2496}, + Year = {2012}, + DOI = {10.1093/eurheartj/ehs109}, + Publisher = {The Oxford University Press}, + ISSN = {0195-668X}, + URL = {http://eurheartj.oxfordjournals.org/content/33/19/2451}, + EPrint = {http://eurheartj.oxfordjournals.org/content/33/19/2451.full.pdf}, + Journal = {European Heart Journal} +} + +###Article{ vahanian2012eurheartj, + Author = { Vahanian, A. and Alfieri, O. and Andreotti, F. and et + al}, + Title = {Guidelines on the management of valvular heart disease + (version 2012)}, + Volume = {33}, + Number = {19}, + Pages = {2451--2496}, + Year = {2012}, + DOI = {10.1093/eurheartj/ehs109}, + Publisher = {The Oxford University Press}, + ISSN = {0195-668X}, + EPrint = {http://eurheartj.oxfordjournals.org/content/33/19/2451.full.pdf}, + Journal = {European Heart Journal} +} + +@Article{ vahanian_guidelines_2012, + langid = {english}, + Title = {Guidelines on the Management of Valvular Heart Disease + (Version 2012)}, + Volume = {33}, + ISSN = {1522-9645}, + DOI = {10.1093/eurheartj/ehs109}, + Number = {19}, + JournalTitle = {European Heart Journal}, + ShortJournal = {Eur. Heart J.}, + Year = {2012-10}, + Pages = {2451-2496}, + Author = {Vahanian, Alec and Alfieri, Ottavio and Andreotti, + Felicita and Antunes, Manuel J. and Barón-Esquivias, + Gonzalo and Baumgartner, Helmut and Borger, Michael Andrew + and Carrel, Thierry P. and De Bonis, Michele and + Evangelista, Arturo and Falk, Volkmar and Iung, Bernard and + Lancellotti, Patrizio and Pierard, Luc and Price, Susanna + and Schäfers, Hans-Joachim and Schuler, Gerhard and + Stepinska, Janina and Swedberg, Karl and Takkenberg, + Johanna and Von Oppell, Ulrich Otto and Windecker, Stephan + and Zamorano, Jose Luis and Zembala, Marian}, + EPrintType = {pmid}, + EPrint = {22922415} +} + +@PhdThesis{ valverde-11, + Author = {Valverde, I.}, + School = {King's College of London}, + Title = {Evaluation of Magnetic Resonance Imaging for Image-Based + Computational Fluid Dynamic Modelling in Aaortic + Coarctation}, + Year = {2012} +} + +###PhdThesis{ valverde-11, + Author = {Valverde, I.}, + School = {King's College of London}, + Title = {Evaluation of Magnetic Resonance Imaging for Image-Based + Computational Fluid Dynamic Modelling in Aaortic + Coarctation}, + Year = {2012} +} + +@InProceedings{ van-leer-83, + Author = {B. van Leer}, + BookTitle = {Von Karman Institute, Lecture series}, + Title = {Computational methods for ideal compressible flows}, + Year = {1983} +} + +###InProceedings{ van-leer-83, + Author = {B. van Leer}, + BookTitle = {Von Karman Institute, Lecture series}, + Title = {Computational methods for ideal compressible flows}, + Year = {1983} +} + +@Article{ van1986second, + Title = {A second-order accurate pressure-correction scheme for + viscous incompressible flow}, + Author = {Van Kan, JJIM}, + Journal = {SIAM Journal on Scientific and Statistical Computing}, + Volume = {7}, + Number = {3}, + Pages = {870--891}, + Year = {1986}, + Publisher = {SIAM} +} + +###Article{ van1986second, + Title = {A second-order accurate pressure-correction scheme for + viscous incompressible flow}, + Author = {Van Kan, JJIM}, + Journal = {SIAM Journal on Scientific and Statistical Computing}, + Volume = {7}, + Number = {3}, + Pages = {870--891}, + Year = {1986}, + Publisher = {SIAM} +} + +@Article{ veneziani_flow_2005, + Title = {Flow Rate Defective Boundary Conditions in Haemodynamics + Simulations}, + Volume = {47}, + Number = {8-9}, + JournalTitle = {International Journal for Numerical Methods in Fluids}, + Year = {2005}, + Pages = {803--816}, + Author = {Veneziani, Alessandro and Vergara, Christian} +} + +@Article{ vergara-08, + Author = {Nobile, F. and Vergara, C.}, + Journal = {SIAM J. Sci. Comput.}, + Number = 2, + Pages = {731--763}, + Title = {An effective fluid-structure interaction formulation for + vascular dynamics by generalized {R}obin conditions}, + Volume = 30, + Year = 2008 +} + +###Article{ vergara-08, + Author = {Nobile, F. and Vergara, C.}, + Journal = {SIAM J. Sci. Comput.}, + Number = 2, + Pages = {731--763}, + Title = {An effective fluid-structure interaction formulation for + vascular dynamics by generalized {R}obin conditions}, + Volume = 30, + Year = 2008 +} + +@Article{ verhaert2011jci, + Title = {Direct T2 quantification of myocardial edema in acute + ischemic injury.}, + Author = {Verhaert, David and Thavendiranathan, Paaladinesh and + Giri, Shivraman and Mihai, Georgeta and Rajagopalan, Sanjay + and Simonetti, Orlando P. and Raman, Subha V.}, + Journal = {JACC Cardiovasc Imaging}, + Year = {2011}, + Month = {Mar}, + Number = {3}, + Pages = {269--278}, + Volume = {4}, + Abstract = {To evaluate the utility of rapid, quantitative T2 mapping + compared with conventional T2-weighted imaging in patients + presenting with various forms of acute myocardial + infarction.T2-weighted cardiac magnetic resonance (CMR) + identifies myocardial edema before the onset of + irreversible ischemic injury and has shown value in + risk-stratifying patients with chest pain. Clinical + acceptance of T2-weighted CMR has, however, been limited by + well-known technical problems associated with existing + techniques. T2 quantification has recently been shown to + overcome these problems; we hypothesized that T2 + measurement in infarcted myocardium versus remote regions + versus zones of microvascular obstruction in acute + myocardial infarction patients could help reduce + uncertainty in interpretation of T2-weighted images.T2 + values using a novel mapping technique were prospectively + recorded in 16 myocardial segments in 27 patients admitted + with acute myocardial infarction. Regional T2 values were + averaged in the infarct zone and remote myocardium, both + defined by a reviewer blinded to the results of T2 mapping. + Myocardial T2 was also measured in a group of 21 healthy + volunteers.T2 of the infarct zone was 69 ± 6 ms compared + with 56 ± 3.4 ms for remote myocardium (p < 0.0001). No + difference in T2 was observed between remote myocardium and + myocardium of healthy volunteers (56 ± 3.4 ms and 55.5 ± + 2.3 ms, respectively, p = NS). T2 mapping allowed for the + detection of edematous myocardium in 26 of 27 patients; by + comparison, segmented breath-hold T2-weighted short tau + inversion recovery images were negative in 7 and + uninterpretable in another 2 due to breathing artifacts. + Within the infarct zone, areas of microvascular obstruction + were characterized by a lower T2 value (59 ± 6 ms) + compared with areas with no microvascular obstruction (71.6 + ± 10 ms, p < 0.0001). T2 mapping provided consistent + high-quality results in patients unable to breath-hold and + in those with irregular heart rhythms, in whom short tau + inversion recovery often yielded inadequate + imaging.Quantitative T2 mapping reliably identifies + myocardial edema without the limitations encountered by + T2-weighted short tau inversion recovery imaging, and may + therefore be clinically more robust in showing acute + ischemic injury.}, + DOI = {10.1016/j.jcmg.2010.09.023}, + Institution = {The Ohio State University, Columbus, Ohio 43210, USA.}, + Keywords = {Acute Disease; Aged; Case-Control Studies; Edema, + diagnosis/etiology/pathology/physiopathology; Female; + Humans; Magnetic Resonance Imaging, Cine; Male; Middle + Aged; Myocardial Ischemia, + complications/diagnosis/pathology/physiopathology; + Myocardium, pathology; Observer Variation; Ohio; Predictive + Value of Tests; Prospective Studies; Reproducibility of + Results; Stroke Volume; Ventricular Function, Left}, + Language = {eng}, + medline-pst = {ppublish}, + owner = {stoeckc}, + pii = {S1936-878X(11)00004-0}, + pmid = {21414575}, + timestamp = {2015.07.24}, + URL = {http://dx.doi.org/10.1016/j.jcmg.2010.09.023} +} + +@Article{ vierendeels-00, + Author = {Vierendeels, J.A. and Riemslagh, K. and Dick, E. and + Verdonck, P.R.}, + Journal = {J. Biomech. Eng. -- Trans. ASME 2000}, + Number = {6}, + Pages = {667--674}, + Title = {Computer simulation of intraventricular flow and pressure + gradients during diastole}, + Volume = {122}, + Year = {2000} +} + +###Article{ vierendeels-00, + Author = {Vierendeels, J.A. and Riemslagh, K. and Dick, E. and + Verdonck, P.R.}, + Journal = {J. Biomech. Eng. -- Trans. ASME 2000}, + Number = {6}, + Pages = {667--674}, + Title = {Computer simulation of intraventricular flow and pressure + gradients during diastole}, + Volume = {122}, + Year = {2000} +} + +@InProceedings{ vierendeels-98, + Author = {Riemslagh, K. and Vierendeels, J.A. and Dick, }, + BookTitle = {Computational Fluid Dynamics '98: Proceeding of the Fourth + European Computational fluid Dynamics Conference}, + Pages = { 1040--1045}, + Title = {Coupling of a {N}avier-{S}tokes solver and an elastic + boundary solver for unsteady problems}, + Volume = {2}, + Year = {1998} +} + +###InProceedings{ vierendeels-98, + Author = {Riemslagh, K. and Vierendeels, J.A. and Dick, }, + BookTitle = {Computational Fluid Dynamics '98: Proceeding of the Fourth + European Computational fluid Dynamics Conference}, + Pages = { 1040--1045}, + Title = {Coupling of a {N}avier-{S}tokes solver and an elastic + boundary solver for unsteady problems}, + Volume = {2}, + Year = {1998} +} + +@Article{ vignon-clementel_outflow_2010, + Title = {Outflow Boundary Conditions for {{3D}} Simulations of + Non-Periodic Blood Flow and Pressure Fields in Deformable + Arteries}, + Volume = {13}, + Number = {5}, + JournalTitle = {Computer methods in biomechanics and biomedical + engineering}, + Year = {2010}, + Pages = {625--640}, + Author = {Vignon-Clementel, Irene E. and Figueroa, C. A. and Jansen, + K. E. and Taylor, C. A.} +} + +@Article{ vignon_2006, + Author = "Vignon-Clementel, I.~E. and Figueroa, C.~A. and Jansen, + K.~E. and Taylor, C.~A.", + Title = "Outßow boundary conditions for three-dimensional Þnite + element modeling of blood ßow and pressure in arteries", + Journal = "Comput. Methods Appl. Mech. Engrg.", + Volume = "195", + Pages = "3776Ð3796", + Year = "2006" +} + +###Article{ vignon_2006, + Author = "Vignon-Clementel, I.~E. and Figueroa, C.~A. and Jansen, + K.~E. and Taylor, C.~A.", + Title = "Outßow boundary conditions for three-dimensional Þnite + element modeling of blood ßow and pressure in arteries", + Journal = "Comput. Methods Appl. Mech. Engrg.", + Volume = "195", + Pages = "3776Ð3796", + Year = "2006" +} + +@Article{ vignon_2010, + Author = "Vignon-Clementel, I.~E. and Figueroa, C.~A. and Jansen, + K.~E. and Taylor, C.~A.", + Title = {"Outflow boundary conditions for 3D simulations of + non-periodic blood flow and pressure fields in deformable + arteries"}, + Journal = {Comp. Meth. Biomech. Biomed. Engrg.}, + Volume = "13", + Pages = "625--640", + Year = "2010" +} + +###Article{ vignon_2010, + Author = "Vignon-Clementel, I.~E. and Figueroa, C.~A. and Jansen, + K.~E. and Taylor, C.~A.", + Title = {"Outflow boundary conditions for 3D simulations of + non-periodic blood flow and pressure fields in deformable + arteries"}, + Journal = {Comp. Meth. Biomech. Biomed. Engrg.}, + Volume = "13", + Pages = "625--640", + Year = "2010" +} + +@Article{ vignong-et-al-2011, + affiliation = {Mechanical and Aerospace Engineering Department, + University of California, San Diego, USA}, + Author = {Esmaily Moghadam, M. and Bazilevs, Y. and Hsia, T.-Y. and + Vignon-Clementel, I. and Marsden, A. and Modeling of + Congenital Hearts Alliance}, + ISSN = {0178-7675}, + Issue = {3}, + Journal = {Computational Mechanics}, + keyword = {Engineering}, + Note = {10.1007/s00466-011-0599-0}, + Pages = {277-291}, + Title = {A comparison of outlet boundary treatments for prevention + of backflow divergence with relevance to blood flow + simulations}, + Volume = {48}, + Year = {2011} +} + +@PhdThesis{ virues-08, + Author = {Virues, J.}, + School = {The University of British Columbia}, + Title = {{Mechanical Properties of Arterial Wall}}, + Year = {2008} +} + +###PhdThesis{ virues-08, + Author = {Virues, J.}, + School = {The University of British Columbia}, + Title = {{Mechanical Properties of Arterial Wall}}, + Year = {2008} +} + +@Article{ vitiello_complications_1998, + Title = {Complications Associated with Pediatric Cardiac + Catheterization}, + Volume = {32}, + Number = {5}, + JournalTitle = {Journal of the American College of Cardiology}, + Year = {1998}, + Pages = {1433--1440}, + Author = {Vitiello, Renato and McCrindle, Brian W. and Nykanen, + David and Freedom, Robert M. and Benson, Lee N.} +} + +@Article{ voelk-etal-05, + Author = {V\"olkl, Thomas and Degenhardt, Karin and Koch, Andreas + and Simm, Diemud and D\"orr, Helmuth and Singer, Helmut}, + Title = {Cardiovascular anomalies in children and young adults with + Ullrich-Turner syndrome the Erlangen experience}, + Journal = {Clinical Cardiology}, + Volume = {28}, + Year = {2005}, + Number = {2}, + Pages = {88-92}, + pubmedid = {15757080}, + ISSN = {0160-9289} +} + +###Article{ voelk-etal-05, + Author = {V\"olkl, Thomas and Degenhardt, Karin and Koch, Andreas + and Simm, Diemud and D\"orr, Helmuth and Singer, Helmut}, + Title = {Cardiovascular anomalies in children and young adults with + Ullrich-Turner syndrome the Erlangen experience}, + Journal = {Clinical Cardiology}, + Volume = {28}, + Year = {2005}, + Number = {2}, + Pages = {88-92}, + URL = {http://www.biomedsearch.com/nih/Cardiovascular-anomalies-in-children-young/15757080.html}, + pubmedid = {15757080}, + ISSN = {0160-9289} +} + +@Article{ vriend2005, + Title = "Late complications in patients after repair of aortic + coarctation: implications for management ", + Journal = "International Journal of Cardiology ", + Volume = "101", + Number = "3", + Pages = "399 - 406", + Year = "2005", + Note = "", + ISSN = "0167-5273", + DOI = "http://dx.doi.org/10.1016/j.ijcard.2004.03.056", + URL = "http://www.sciencedirect.com/science/article/pii/S016752730400405X", + Author = "Joris W.J. Vriend and Barbara J.M. Mulder", + Keywords = "Hypertension ", + Abstract = "Survival of patients with aortic coarctation has + dramatically improved after surgical repair became + available and the number of patients who were operated and + reach adulthood is steadily increasing. However, life + expectancy is still not as normal as in unaffected peers. + Cardiovascular complications are frequent and require + indefinite follow-up. Concern falls chiefly in seven + categories: recoarctation, aortic aneurysm formation or + aortic dissection, coexisting bicuspid aortic valve, + endocarditis, premature coronary atherosclerosis, + cerebrovascular accidents and systemic hypertension. In + this review, these complications, with particular reference + to late hypertension, are discussed and strategies for the + clinical management of post-coarctectomy patients are + described. " +} + +@Article{ vsvihlova2016determination, + Title = {Determination of pressure data from velocity data with a + view toward its application in cardiovascular mechanics. + {P}art 1. {T}heoretical considerations}, + Author = {{\v{S}}vihlov{\'a}, H and Hron, J and M{\'a}lek, J and + Rajagopal, KR and Rajagopal, K}, + Journal = {International Journal of Engineering Science}, + Year = {2016, In press}, + URL = {http://www.sciencedirect.com/science/article/pii/S0020722515001858}, + Publisher = {Elsevier} +} + +###Article{ vsvihlova2016determination, + Title = {Determination of pressure data from velocity data with a + view toward its application in cardiovascular mechanics. + {P}art 1. {T}heoretical considerations}, + Author = {{\v{S}}vihlov{\'a}, H and Hron, J and M{\'a}lek, J and + Rajagopal, KR and Rajagopal, K}, + Journal = {International Journal of Engineering Science}, + Year = {2016, In press}, + Publisher = {Elsevier} +} + +@Article{ wake_choice_2009, + langid = {english}, + Title = {Choice of {{In Vivo Versus Idealized Velocity Boundary + Conditions Influences Physiologically Relevant Flow + Patterns}} in a {{Subject}}-{{Specific Simulation}} of + {{Flow}} in the {{Human Carotid Bifurcation}}}, + Volume = {131}, + ISSN = {01480731}, + URL = {http://Biomechanical.asmedigitalcollection.asme.org/article.aspx?articleid=1421173}, + DOI = {10.1115/1.3005157}, + Number = {2}, + JournalTitle = {Journal of Biomechanical Engineering}, + URLDate = {2019-02-21}, + Year = {2009}, + Pages = {021013}, + Author = {Wake, Amanda K. and Oshinski, John N. and Tannenbaum, + Allen R. and Giddens, Don P.} +} + +@Article{ walker2005jtcs, + Title = {Helical myofiber orientation after myocardial infarction + and left ventricular surgical restoration in sheep }, + Author = {Joseph C. Walker and Julius M. Guccione and Yi Jiang and + Peng Zhang and Arthur W. Wallace and Edward W. Hsu and Mark + B. Ratcliffe}, + Journal = {The Journal of Thoracic and Cardiovascular Surgery }, + Year = {2005}, + Number = {2}, + Pages = {382 - 390}, + Volume = {129}, + Abstract = {Objectives It has been proposed that successful left + ventricular surgical restoration should restore normal + helical myofiber orientation. A magnetic resonance imaging + technique, magnetic resonance diffusion tensor imaging, has + been developed to measure myocyte orientation. By using + magnetic resonance diffusion tensor imaging, this study + tested the hypothesis that (1) myocyte orientation is + altered after anteroapical myocardial infarction and (2) + left ventricular surgical restoration restores normal helix + angles. Methods Thirteen sheep underwent anteroapical + myocardial infarction (25% of left ventricular mass). Ten + weeks later, animals underwent either aneurysm plication (n + = 8) or sham operations (n = 5). Six weeks after this + operation, hearts were excised, perfusion fixed in + diastole, and underwent magnetic resonance diffusion tensor + imaging. Hearts from normal sheep (n = 5) were also + harvested and imaged. Primary eigenvectors of the diffusion + tensors from magnetic resonance diffusion tensor imaging + were resolved into helix angles relative to a local wall + coordinate system. Transmural samples of the helix angles + were compared at the border zone of the aneurysm or repair + (or a comparable distance from the base in normal sheep), 1 + cm below the valves, and halfway between. Results The + helical myofiber orientation did not change after + myocardial infarction. However, aneurysm plication caused + myofibers in the anterior border zone to rotate + counterclockwise (?35.6 ± 10.5°, P = .028) and those in + the lateral border zone to rotate clockwise (34.4 ± 8.1°, + P = .031). Conclusions Surgical restoration alters myocyte + orientation adjacent to the surgical repair. However, + myofiber orientation is not abnormal after myocardial + infarction, and thus surgical restoration techniques intent + on restoring normal helix angles might not be warranted. }, + DOI = {http://dx.doi.org/10.1016/j.jtcvs.2004.06.006}, + File = {walker05.pdf:walker05.pdf:PDF}, + ISSN = {0022-5223}, + timestamp = {2015/09/22}, + URL = {http://www.sciencedirect.com/science/article/pii/S0022522304008359} +} + +@InProceedings{ wall-mok-ramm-99, + Author = {Mok, D. P. and Wall, W. A. and Ramm, E.}, + BookTitle = {Proceedings of the European Conference on Computational + Mechanics}, + code = {fsi5}, + Editor = {W. Wunderlich}, + Publisher = {ECCM'99, TU Munich}, + Title = {Partitioned analysis approach for the transient, coupled + response of viscous fluids and flexible structures}, + Year = {1999} +} + +###InProceedings{ wall-mok-ramm-99, + Author = {Mok, D. P. and Wall, W. A. and Ramm, E.}, + BookTitle = {Proceedings of the European Conference on Computational + Mechanics}, + code = {fsi5}, + Editor = {W. Wunderlich}, + Publisher = {ECCM'99, TU Munich}, + Title = {Partitioned analysis approach for the transient, coupled + response of viscous fluids and flexible structures}, + Year = {1999} +} + +@Article{ wall2010baci, + Title = {Baci: a parallel multiphysics finite element environment}, + Author = {Wall, WA and Gee, MW}, + Journal = {Institute for Computational Mechanics, Technische + Universit{\"a}t M{\"u}nchen}, + Year = {2010} +} + +@Article{ wall2010ijnmbe, + Title = {Towards a comprehensive computational model for the + respiratory system}, + Author = {Wall, Wolfgang A and Wiechert, Lena and Comerford, Andrew + and Rausch, Sophie}, + Journal = {International Journal for Numerical Methods in Biomedical + Engineering}, + Volume = {26}, + Number = {7}, + Pages = {807--827}, + Year = {2010}, + Publisher = {Wiley Online Library} +} + +@Article{ wang2009, + Title = "Modelling passive diastolic mechanics with quantitative + MRI of cardiac structure and function", + Journal = "Medical Image Analysis", + Volume = "13", + Number = "5", + Pages = "773 - 784", + Year = "2009", + Note = "Includes Special Section on the 12th + International Conference on Medical Imaging and Computer + Assisted Intervention", + ISSN = "1361-8415", + DOI = "10.1016/j.media.2009.07.006", + Author = "Vicky Y. Wang and H.I. Lam and Daniel B. Ennis and Brett + R. Cowan and Alistair A. Young and Martyn P. Nash", + Keywords = "Material parameter estimation" +} + +@Article{ wang2011pulmonary, + Title = {Pulmonary vascular wall stiffness: an important + contributor to the increased right ventricular afterload + with pulmonary hypertension}, + Author = {Wang, Zhijie and Chesler, Naomi C}, + Journal = {Pulmonary circulation}, + Volume = {1}, + Number = {2}, + Pages = {212--223}, + Year = {2011}, + Publisher = {SAGE Publications Sage UK: London, England} +} + +@Article{ wang2014bmmmb, + Title = {A modified Holzapfel-Ogden law for a residually stressed + finite strain model of the human left ventricle in + diastole}, + Author = {Wang, HM and Luo, XY and Gao, H and Ogden, RW and + Griffith, BE and Berry, C and Wang, TJ}, + Journal = {Biomechanics and modeling in mechanobiology}, + Volume = {13}, + Number = {1}, + Pages = {99--113}, + Year = {2014}, + Publisher = {Springer} +} + +@Article{ warburton-hesthaven-03, + Author = {Warburton, T. and Hesthaven, J. S.}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Number = {25}, + Pages = {2765--2773}, + Title = {On the constants in {$hp$}-finite element trace inverse + inequalities}, + Volume = {192}, + Year = {2003} +} + +###Article{ warburton-hesthaven-03, + Author = {Warburton, T. and Hesthaven, J. S.}, + Journal = {Comput. Methods Appl. Mech. Engrg.}, + Number = {25}, + Pages = {2765--2773}, + Title = {On the constants in {$hp$}-finite element trace inverse + inequalities}, + Volume = {192}, + Year = {2003} +} + +@Article{ warnes2008acc, + Title = {{ACC}/{AHA} 2008 Guidelines for the Management of Adults + With Congenital Heart Disease}, + Author = {Warnes, Carole A and Williams, Roberta G and Bashore, + Thomas M and others}, + Journal = {Journal of the American College of Cardiology}, + Volume = {52}, + Number = {23}, + Pages = {e143--e263}, + Year = {2008}, + Publisher = {Am Coll Cardio Found} +} + +###Article{ warnes2008acc, + Title = {{ACC}/{AHA} 2008 Guidelines for the Management of Adults + With Congenital Heart Disease}, + Author = {Warnes, Carole A and Williams, Roberta G and Bashore, + Thomas M and Child, John S and Connolly, Heidi M and + Dearani, Joseph A and del Nido, Pedro and Fasules, James W + and Graham, Thomas P and Hijazi, Ziyad M and others}, + Journal = {Journal of the American College of Cardiology}, + Volume = {52}, + Number = {23}, + Pages = {e143--e263}, + Year = {2008}, + Publisher = {Am Coll Cardio Found} +} + +@Article{ warnes_acc/aha_2008, + Title = {{{ACC}}/{{AHA}} 2008 {{Guidelines}} for the {{Management}} + of {{Adults With Congenital Heart Disease}}: {{Executive + Summary}}: {{A Report}} of the {{American College}} of + {{Cardiology}}/{{American Heart Association Task Force}} on + {{Practice Guidelines}} ({{Writing Committee}} to {{Develop + Guidelines}} for the {{Management}} of {{Adults With + Congenital Heart Disease}}) {{Developed}} in + {{Collaboration With}} the {{American Society}} of + {{Echocardiography}}, {{Heart Rhythm Society}}, + {{International Society}} for {{Adult Congenital Heart + Disease}}, {{Society}} for {{Cardiovascular Angiography}} + and {{Interventions}}, and {{Society}} of {{Thoracic + Surgeons}}}, + ShortTitle = {{{ACC}}/{{AHA}} 2008 {{Guidelines}} for the {{Management}} + of {{Adults With Congenital Heart Disease}}}, + Author = {Warnes, Carole A. and Williams, Roberta G. and Bashore, + Thomas M. and Child, John S. and Connolly, Heidi M. and + Dearani, Joseph A. and Del Nido, Pedro and Fasules, James + W. and Graham, Thomas P. and Hijazi, Ziyad M.}, + Year = {2008}, + Volume = {52}, + Pages = {1890--1947}, + Journal = {Journal of the American College of Cardiology}, + Number = {23} +} + +@Article{ watton2004bmm, + Title = {A mathematical model for the growth of the abdominal + aortic aneurysm}, + Author = {Watton, P.N. and Hill, N.A. and Heil, M.}, + Journal = {Biomechanics and Modeling in Mechanobiology}, + Year = {2004}, + Number = {2}, + Pages = {98-113}, + Volume = {3}, + DOI = {10.1007/s10237-004-0052-9}, + ISSN = {1617-7959}, + Language = {English}, + Publisher = {Springer-Verlag}, + timestamp = {2015/09/22}, + URL = {http://dx.doi.org/10.1007/s10237-004-0052-9} +} + +@Article{ watton2011bmm, + Title = {Modelling evolution and the evolving mechanical + environment of saccular cerebral aneurysms}, + Author = {Watton, P.N. and Selimovic, A. and Raberger, N.B. and + Huang, P. and Holzapfel, G.A. and Ventikos, Y.}, + Journal = {Biomechanics and Modeling in Mechanobiology}, + Year = {2011}, + Number = {1}, + Pages = {109-132}, + Volume = {10}, + DOI = {10.1007/s10237-010-0221-y}, + ISSN = {1617-7959}, + Keywords = {Aneurysm; Finite elasticity; Cerebral; Growth; + Remodelling; Haemodynamics; Cyclic stretch; WSS; WSSG; OSI; + RRT}, + Language = {English}, + Publisher = {Springer-Verlag}, + timestamp = {2015/09/22}, + URL = {http://dx.doi.org/10.1007/s10237-010-0221-y} +} + +@Article{ wen_investigation_2010, + Title = {Investigation of Pulsatile Flowfield in Healthy Thoracic + Aorta Models}, + Author = {Wen, Chih-Yung and Yang, An-Shik and Tseng, Li-Yu and + Chai, Jyh-Wen}, + Year = {2010}, + Volume = {38}, + Pages = {391--402}, + Journal = {Annals of biomedical engineering}, + Number = {2} +} + +@Article{ wendell2012including, + Title = {Including aortic valve morphology in computational fluid + dynamics simulations: Initial findings and application to + aortic coarctation}, + Author = {Wendell, D.C. and Samyn, M.M. and Cava, J.R. and Ellwein, + L.M. and Krolikowski, M.M. and Gandy, K.L. and Pelech, A.N. + and Shadden, S.C. and LaDisa, J.F.}, + Journal = {Medical Engineering \& Physics}, + Year = {2012}, + Abstract = {Computational fluid dynamics (CFD) simulations quantifying + thoracic aortic flow patterns have not included + disturbances from the aortic valve (AoV). 80\% of patients + with aortic coarctation (CoA) have a bicuspid aortic valve + (BAV) which may cause adverse flow patterns contributing to + morbidity. Our objectives were to develop a method to + account for the AoV in CFD simulations, and quantify its + impact on local hemodynamics. The method developed + facilitates segmentation of the AoV, spatiotemporal + interpolation of segments, and anatomic positioning of + segments at the CFD model inlet. The AoV was included in + CFD model examples of a normal (tricuspid AoV) and a + post-surgical CoA patient (BAV). Velocity, turbulent + kinetic energy (TKE), time-averaged wall shear stress + (TAWSS), and oscillatory shear index (OSI) results were + compared to equivalent simulations using a plug inlet + profile. The plug inlet greatly underestimated TKE for both + examples. TAWSS differences extended throughout the + thoracic aorta for the CoA BAV, but were limited to the + arch for the normal example. OSI differences existed mainly + in the ascending aorta for both cases. The impact of AoV + can now be included with CFD simulations to identify + regions of deleterious hemodynamics thereby advancing + simulations of the thoracic aorta one step closer to + reality.}, + Publisher = {Elsevier} +} + +###Article{ wendell2012including, + Title = {Including aortic valve morphology in computational fluid + dynamics simulations: Initial findings and application to + aortic coarctation}, + Author = {Wendell, D.C. and Samyn, M.M. and Cava, J.R. and Ellwein, + L.M. and Krolikowski, M.M. and Gandy, K.L. and Pelech, A.N. + and Shadden, S.C. and LaDisa, J.F.}, + Journal = {Medical Engineering \& Physics}, + Year = {2012}, + Abstract = {Computational fluid dynamics (CFD) simulations quantifying + thoracic aortic flow patterns have not included + disturbances from the aortic valve (AoV). 80\% of patients + with aortic coarctation (CoA) have a bicuspid aortic valve + (BAV) which may cause adverse flow patterns contributing to + morbidity. Our objectives were to develop a method to + account for the AoV in CFD simulations, and quantify its + impact on local hemodynamics. The method developed + facilitates segmentation of the AoV, spatiotemporal + interpolation of segments, and anatomic positioning of + segments at the CFD model inlet. The AoV was included in + CFD model examples of a normal (tricuspid AoV) and a + post-surgical CoA patient (BAV). Velocity, turbulent + kinetic energy (TKE), time-averaged wall shear stress + (TAWSS), and oscillatory shear index (OSI) results were + compared to equivalent simulations using a plug inlet + profile. The plug inlet greatly underestimated TKE for both + examples. TAWSS differences extended throughout the + thoracic aorta for the CoA BAV, but were limited to the + arch for the normal example. OSI differences existed mainly + in the ascending aorta for both cases. The impact of AoV + can now be included with CFD simulations to identify + regions of deleterious hemodynamics thereby advancing + simulations of the thoracic aorta one step closer to + reality.}, + Publisher = {Elsevier} +} + +@Article{ westerhof_arterial_2009, + Title = {The Arterial Windkessel}, + Volume = {47}, + Number = {2}, + JournalTitle = {Medical \& biological engineering \& computing}, + Year = {2009}, + Pages = {131--141}, + Author = {Westerhof, Nico and Lankhaar, Jan-Willem and Westerhof, + Berend E.} +} + +@Article{ white1987circ, + Title = {Left ventricular end-systolic volume as the major + determinant of survival after recovery from myocardial + infarction.}, + Author = {White, H D and Norris, R M and Brown, M A and Brandt, P W + and Whitlock, R M and Wild, C J}, + Journal = {Circulation}, + Year = {1987}, + Number = {1}, + Pages = {44-51}, + Volume = {76}, + Abstract = {Impairment of left ventricular function is the major + predictor of mortality after acute myocardial infarction, + but it is not known whether this is best described by + ejection fraction or by end-systolic or end-diastolic + volume. We measured volumes, ejection fractions, and + severity of coronary arterial occlusions and stenoses in + 605 male patients under 60 years of age at 1 to 2 months + after a first (n = 443) or recurrent (n = 162) myocardial + infarction and followed these patients for a mean of 78 + months for survivors (range 15 to 165 months). There were + 101 cardiac deaths, 71 (70%) of which were sudden + (instantaneous or found dead). Multivariate analysis with + log rank testing and the Cox proportional hazards model + showed that end-systolic volume (chi 2 = 82.9) had greater + predictive value for survival than end-diastolic volume + (chi 2 = 59.0) or ejection fraction (chi 2 = 46.6), whereas + stepwise analysis showed that once the relationship between + survival and end-systolic volume had been fitted, there was + no additional significant predictive information in either + end-diastolic volume or ejection fraction. Severity of + coronary occlusions and stenoses showed additional + prediction of only borderline significance (p = .04 in one + analysis), but continued cigarette smoking did remain an + independent risk factor after stepwise analysis. For a + subset of patients (n = 200) who had taken part in a + randomized trial of coronary artery surgery after recovery + from infarction, surgical "intention to treat" showed no + predictive value.(ABSTRACT TRUNCATED AT 250 WORDS)}, + DOI = {10.1161/01.CIR.76.1.44}, + EPrint = {http://circ.ahajournals.org/content/76/1/44.full.pdf+html}, + File = {white87.pdf:white87.pdf:PDF}, + timestamp = {2015/09/13}, + URL = {http://circ.ahajournals.org/content/76/1/44.abstract} +} + +@Article{ white2008lancet, + Title = {Acute myocardial infarction }, + Author = {Harvey D White and Derek P Chew}, + Journal = {The Lancet }, + Year = {2008}, + Number = {9638}, + Pages = {570 - 584}, + Volume = {372}, + Abstract = {Summary Modern management of acute myocardial infarction + is built on a clinical evidence base drawn from many + studies undertaken over the past three decades. The + evolution in clinical practice has substantially reduced + mortality and morbidity associated with the condition. Key + to this success is the effective integration of + antithrombotic therapy combined with timely reperfusion, + either primary percutaneous coronary intervention or + fibrinolysis for ST-elevation myocardial infarction, and + invasive investigation and revascularisation for + non-ST-elevation myocardial infarction, underpinned by risk + stratification and optimised systems of care. After the + development of troponin assays for the detection of + myonecrosis, the universal definition and classification of + myocardial infarction now indicates the underlying + pathophysiology. Additionally, an increasing appreciation + of the importance of adverse events, such as bleeding, has + emerged. Remaining challenges include the effective + translation of this evidence to all patients with + myocardial infarction, especially to those not well + represented in clinical trials who remain at increased risk + of adverse events, such as elderly patients and those with + renal failure. On a global level, the epidemic of diabetes + and obesity in the developed world and the transition from + infectious diseases to cardiovascular disease in the + developing world will place an increasing demand on + health-care infrastructures required to deliver + time-dependent and resource-intensive care. This Seminar + discusses the underlying pathophysiology, evolving + perspectives on diagnosis, risk stratification, and the + invasive and pharmacological management of myocardial + infarction. }, + DOI = {http://dx.doi.org/10.1016/S0140-6736(08)61237-4}, + File = {white08.pdf:white08.pdf:PDF}, + ISSN = {0140-6736}, + timestamp = {2015/09/14}, + URL = {http://www.sciencedirect.com/science/article/pii/S0140673608612374} +} + +@Book{ whitham-99, + Address = {New York}, + Author = {Whitham, G. B.}, + Publisher = {John Wiley \& Sons Inc.}, + Title = {Linear and nonlinear waves}, + Year = {1999} +} + +###Book{ whitham-99, + Address = {New York}, + Author = {Whitham, G. B.}, + Publisher = {John Wiley \& Sons Inc.}, + Title = {Linear and nonlinear waves}, + Year = {1999} +} + +@Report{ who_global_2018, + Location = {{Geneva}}, + Title = {Global {{Heath Estimates}} 2016: {{Deaths}} by {{Cause}}, + {{Age}}, {{Sex}}, by {{Country}} and by {{Region}}, + 2000--2016}, + Institution = {{World Health Organization}}, + Year = {2018}, + Author = {{WHO}} +} + +@Article{ wick2011phd, + Title = {Adaptive finite element simulation of fluid-structure + interaction with application to heart-valve dynamics}, + Author = {Wick, Thomas}, + Year = {2011}, + Journal = {Ph.D Thesis, University of Heidelberg} +} + +@article{wick2020optimizationFSI, + title={Optimization with nonstationary, nonlinear monolithic fluid-structure interaction}, + author={Wick, Thomas and Wollner, Winnifried}, + journal={International Journal for Numerical Methods in Engineering}, + year={2020}, + publisher={Wiley Online Library} +} + +@Article{ wiechert2009jem, + Title = {Modeling the mechanical behavior of lung tissue at the + microlevel}, + Author = {Wiechert, Lena and Metzke, Robert and Wall, Wolfgang A}, + Journal = {Journal of engineering mechanics}, + Volume = {135}, + Number = {5}, + Pages = {434--438}, + Year = {2009}, + Publisher = {American Society of Civil Engineers} +} + +@Article{ wiegel-perelson-82, + Annote = {blood, aggregation, red cells, rouleaux}, + Author = {Wiegel, F.W. and Perelson, A.S.}, + code = {cel6}, + Journal = {J. Stat. Phys.}, + Number = {4}, + Pages = {813-848}, + Title = {Statistical mechanics of red blood cell aggregation: the + distribution of rouleaux in thermal equilibrium}, + Volume = {29}, + Year = {1982} +} + +###Article{ wiegel-perelson-82, + Annote = {blood, aggregation, red cells, rouleaux}, + Author = {Wiegel, F.W. and Perelson, A.S.}, + code = {cel6}, + Journal = {J. Stat. Phys.}, + Number = {4}, + Pages = {813-848}, + Title = {Statistical mechanics of red blood cell aggregation: the + distribution of rouleaux in thermal equilibrium}, + Volume = {29}, + Year = {1982} +} + +@Article{ wigstroem1996mrm, + Title = {Temporally resolved 3D phase-contrast imaging.}, + Author = {Wigstr{\"{o}}m, L. and Sj{\"{o}}qvist, L. and Wranne, B.}, + Journal = {Magn Reson Med}, + Year = {1996}, + Month = {Nov}, + Number = {5}, + Pages = {800--803}, + Volume = {36}, + Abstract = {A conventional 3D phase contrast acquisition generates + images with good spatial resolution, but often gives rise + to artifacts due to pulsatile flow. 2D cine phase contrast, + on the other hand, can register dynamic flow, but has a + poor spatial resolution perpendicular to the imaging plane. + A combination of both high spatial and temporal resolution + may be advantageous in some cases, both in quantitative + flow measurements and in MR angiography. The described 3D + cine phase contrast pulse sequence creates a temporally + resolved series of 3D data sets with velocity encoded + data.}, + Institution = {Department of Clinical Physiology, Faculty of Health + Sciences, Linköping University, Sweden.}, + Keywords = {Electrocardiography; Humans; Magnetic Resonance + Angiography, methods; Magnetic Resonance Imaging, Cine, + methods}, + Language = {eng}, + medline-pst = {ppublish}, + owner = {stoeckc}, + pmid = {8916033}, + timestamp = {2015.07.28} +} + +@Article{ wilkins2017european, + Title = {European cardiovascular disease statistics 2017}, + Author = {Wilkins, Elizabeth and Wilson, L and Wickramasinghe, + Kremlin and Bhatnagar, Prachi and Leal, Jose and + Luengo-Fernandez, Ramon and Burns, R and Rayner, Mike and + Townsend, Nick}, + Year = {2017}, + Publisher = {European Heart Network}, + Note = {EHN Registration No 16416/93} +} + +@Report{ wilkins_european_2017, + Title = {European Cardiovascular Disease Statistics 2017}, + Year = {2017}, + Author = {Wilkins, Elizabeth and Wilson, L. and Wickramasinghe, + Kremlin and Bhatnagar, Prachi and Leal, Jose and + Luengo-Fernandez, Ramon and Burns, R. and Rayner, Mike and + Townsend, Nick}, + Institution = {European Heart Network}, + Location = {Brussels} +} + +@InProceedings{ wilson-wang-dutton-taylor-01, + Address = {London, UK}, + Author = {Wilson,, Nathan and Wang,, Kenneth and Dutton,, Robert W. + and Taylor,, Charles}, + BookTitle = {MICCAI '01: Proceedings of the 4th International + Conference on Medical Image Computing and Computer-Assisted + Intervention}, + date-added = {2009-03-10 12:15:56 -0700}, + date-modified = {2009-03-10 12:16:40 -0700}, + ISBN = {3-540-42697-3}, + Pages = {449--456}, + Publisher = {Springer-Verlag}, + Title = {A Software Framework for Creating Patient Specific + Geometric Models from Medical Imaging Data for Simulation + Based Medical Planning of Vascular Surgery}, + Year = {2001} +} + +###InProceedings{ wilson-wang-dutton-taylor-01, + Address = {London, UK}, + Author = {Wilson,, Nathan and Wang,, Kenneth and Dutton,, Robert W. + and Taylor,, Charles}, + BookTitle = {MICCAI '01: Proceedings of the 4th International + Conference on Medical Image Computing and Computer-Assisted + Intervention}, + date-added = {2009-03-10 12:15:56 -0700}, + date-modified = {2009-03-10 12:16:40 -0700}, + ISBN = {3-540-42697-3}, + Pages = {449--456}, + Publisher = {Springer-Verlag}, + Title = {A Software Framework for Creating Patient Specific + Geometric Models from Medical Imaging Data for Simulation + Based Medical Planning of Vascular Surgery}, + Year = {2001} +} + +@Article{ wilson2012procrsoc, + Title = {Parametric study of effects of collagen turnover on the + natural history of abdominal aortic aneurysms}, + Author = {Wilson, J. S. and Baek, S. and Humphrey, J. D.}, + Journal = {Proceedings of the Royal Society of London A: + Mathematical, Physical and Engineering Sciences}, + Year = {2012}, + Number = {2150}, + Volume = {469}, + Abstract = {Abdominal aortic aneurysms (AAAs) are characterized by + significant changes in the architecture of the aortic wall, + notably, loss of functional elastin and smooth muscle. + Because collagen is the principal remaining load-bearing + constituent of the aneurysmal wall, its turnover must play + a fundamental role in the natural history of the lesion. + Nevertheless, detailed investigations of the effects of + different aspects of collagen turnover on AAA development + are lacking. A finite-element membrane model of the growth + and remodelling of idealized AAAs was thus used to + investigate parametrically four of the primary aspects of + collagen turnover: rates of production, half-life, + deposition stretch (prestretch) and material stiffness. The + predicted rates of aneurysmal expansion and spatio-temporal + changes in wall thickness, biaxial stresses and maximum + collagen fibre stretch at the apex of the lesion depended + strongly on all four factors, as did the predicted clinical + endpoints (i.e. arrest, progressive expansion or rupture). + Collagen turnover also affected the axial expansion, + largely due to mechanical changes within the shoulder + region of the lesion. We submit, therefore, that assessment + of rupture risk could be improved by future experiments + that delineate and quantify different aspects of + patient-specific collagen turnover and that such + understanding could lead to new targeted therapeutics.}, + DOI = {10.1098/rspa.2012.0556}, + File = {wilson12.pdf:wilson12.pdf:PDF}, + ISSN = {1364-5021}, + Publisher = {The Royal Society}, + timestamp = {2015/09/22} +} + +@Article{ wipperman-1985, + Author = {Wippermann, F.K.}, + Journal = {Journal of Fluid Mechanics}, + Pages = {487--501}, + Title = {On the fluid dynamics of the aortic valve}, + Volume = {159}, + Year = {1985} +} + +###Article{ wipperman-1985, + Author = {Wippermann, F.K.}, + Journal = {Journal of Fluid Mechanics}, + Pages = {487--501}, + Title = {On the fluid dynamics of the aortic valve}, + Volume = {159}, + Year = {1985} +} + +@Article{ wong-kuhl-12, + Author = {Wong, J. and Kuhl, E.}, + Title = {Generating fibre orientation maps in human heart models + using Poisson interpolation}, + Journal = {Computer Methods in Biomechanics and Biomedical + Engineering}, + Pages = {1-10}, + Year = {2012} +} + +@Article{ wong2004ajc, + Title = {Relation of left ventricular sphericity to 10-year + survival after acute myocardial infarction }, + Author = {Selwyn P. Wong and John K. French and Anna-Maria Lydon and + Samuel O.M. Manda and Wanzhen Gao and Noel G. Ashton and + Harvey D. White}, + Journal = {The American Journal of Cardiology }, + Year = {2004}, + Number = {10}, + Pages = {1270 - 1275}, + Volume = {94}, + Abstract = {After ST-elevation myocardial infarction, the association + between left ventricular sphericity (measured by biplane + ventriculography) and survival rate at a median of 6.5 + years was determined in 825 patients. The highest tertileof + sphericity (vs the lowest and middle tertiles) was + associated with a decreased 10-year survival rate in + patients who had anterior myocardial infarction (p = + 0.002), inferior myocardial infarction (p = 0.011), + Thrombolysis In Myocardial Infarction (TIMI) grade 3 flow + (p = 0.005), or \{TIMI\} grade 0 to 2 flow (p = 0.001) in + the infarct artery. The independent multivariate predictors + of a 10-year survival rate were ejection fraction (p = + 0.002), treadmill exercise duration (p = 0.004), biplane + left ventricular sphericity index (p = 0.032), age (p = + 0.043), and end-systolic volume index (p = 0.047), but not + \{TIMI\} flow grade. }, + DOI = {http://dx.doi.org/10.1016/j.amjcard.2004.07.110}, + File = {wong04.pdf:wong04.pdf:PDF}, + ISSN = {0002-9149}, + timestamp = {2015/09/20}, + URL = {http://www.sciencedirect.com/science/article/pii/S000291490401224X} +} + +@Article{ woodrum_romano_lerman_pandya_brosh_rossman_lerman_ehman_2006, + Title = {Vascular wall elasticity measurement by magnetic resonance + imaging.}, + Volume = {56}, + Number = {3}, + Journal = {Magnetic Resonance in Medicine}, + Author = {Woodrum, D.A. and Romano, A.J. and Lerman, A. and Pandya, + U.H. and Brosh, D. and Rossman, P.J. and Lerman, L.O. and + Ehman, R.L.}, + Year = {2006}, + Pages = {593--600} +} + +###Article{ woodrum_romano_lerman_pandya_brosh_rossman_lerman_ehman_2006, + Title = {Vascular wall elasticity measurement by magnetic resonance + imaging.}, + Volume = {56}, + URL = {http://www.scopus.com/inward/record.url?eid=2-s2.0-33748338132&partnerID=40&md5=87accf007d9aa1c5f05229d032bb4998}, + Number = {3}, + Journal = {Magnetic Resonance in Medicine}, + Author = {Woodrum, D.A. and Romano, A.J. and Lerman, A. and Pandya, + U.H. and Brosh, D. and Rossman, P.J. and Lerman, L.O. and + Ehman, R.L.}, + Year = {2006}, + Pages = {593--600} +} + +@Article{ wu2007mrm, + Title = {MR diffusion tensor imaging study of postinfarct + myocardium structural remodeling in a porcine model.}, + Author = {Wu, Ed X. and Wu, Yin and Nicholls, John M. and Wang, Jie + and Liao, Songyan and Zhu, Shuguang and Lau, Chu-Pak and + Tse, Hung-Fat}, + Journal = {Magn Reson Med}, + Year = {2007}, + Month = {Oct}, + Number = {4}, + Pages = {687--695}, + Volume = {58}, + __markedentry = {[stoeckc:]}, + Abstract = {This study aimed to investigate postinfarct left + ventricular (LV) fiber structural alterations by ex vivo + diffusion tensor imaging (DTI) in a porcine heart model. In + vivo cardiac MR imaging was first performed to measure + ventricular function in six adult pigs with septal + infarction near apex induced by the LAD ligation 13 weeks + earlier. Hearts were then excised from the infarct pigs (n + = 6) and six intact controls (n = 6) and fixed in formalin. + High-resolution DTI was employed to examine changes in + fractional anisotropy (FA), apparent diffusion coefficient + (ADC), and transmural helix angle distribution in the + infarct, adjacent and remote regions as compared to the + sham regions in the controls. FA values were found to + decrease in the infarct and differ between the adjacent and + remote regions. ADC increase in the infarct region was + substantial, while changes in the adjacent and remote + regions were insignificant. Structurally, the double-helix + myocardial structure shifted toward more left-handed around + the infarcted myocardium. Accordingly, the histological + analysis revealed clear fiber structural degradation in the + adjacent region. These findings confirmed the subtle + alterations in the myocardial fiber quality and structure + not only in the infarcted but also in the surrounding + noninfarcted myocardium or borderzone.}, + DOI = {10.1002/mrm.21350}, + Institution = {Laboratory of Biomedical Imaging and Signal Processing, + University of Hong Kong, Hong Kong. ewu@eee.hku.hk}, + Keywords = {Animals; Anisotropy; Diffusion Magnetic Resonance Imaging; + Disease Models, Animal; Myocardial Infarction, pathology; + Swine; Swine, Miniature; Ventricular Remodeling, + physiology}, + Language = {eng}, + medline-pst = {ppublish}, + owner = {stoeckc}, + pmid = {17899595}, + timestamp = {2015.07.28}, + URL = {http://dx.doi.org/10.1002/mrm.21350} +} + +@Article{ wu2009cci, + Title = {Sequential changes of myocardial microstructure in + patients postmyocardial infarction by diffusion-tensor + cardiac MR: correlation with left ventricular structure and + function.}, + Author = {Wu, Ming-Ting and Su, Mao-Yuan M. and Huang, Yi-Luan and + Chiou, Kuan-Rau and Yang, Pinchen and Pan, Huay-Ben and + Reese, Timothy G. and Wedeen, Van J. and Tseng, Wen-Yih + I.}, + Journal = {Circ Cardiovasc Imaging}, + Year = {2009}, + Month = {Jan}, + Number = {1}, + Pages = {32--40, 6 p following 40}, + Volume = {2}, + __markedentry = {[stoeckc:6]}, + Abstract = {We used diffusion-tensor cardiac MR to investigate + myocardial microstructure changes, including tissue + integrity (mean diffusivity [MD], fractional anisotropy) + and fiber architecture (helix angles) in patients with + recent myocardial infarction (MI). This study aimed to + investigate the sequential changes of myocardial + microstructure and its relationships with changes of + macrostructure and function of the left ventricle + post-MI.Seventeen patients (age, 55.1+/-11.5 years; all + men) participated in the follow-up study. Diffusion-tensor + cardiac MR, cine gradient echo for left ventricle function, + and late gadolinium enhancement for viability were measured + from recent to chronic MI (median interval, 191 days). When + compared with the remote zone, the infarct-adjacent zone + showed overall increase of MD (2-way MANOVA, F(1,16)=36.3; + P<0.001), decrease of fractional anisotropy (F(1,16)=5.8; + P=0.029), and decrease of mean helix angles (F(1,16)=62.0; + P<0.001). From recent to chronic MI, there was overall + sequential decrease of MD (F(1,16)=22.6; P<0.001) and + increase of fractional anisotropy (F(1,16)=7.8; P=0.013). + Multiple linear regression showed that the improvement of + wall thickening in the infarct-adjacent zone correlated + with sequential decrease of MD in the infarct-adjacent zone + (r=-0.70; P=0.002) and increase of mean helix angles (ie, + more right-handed helical myofiber reorientation, + predominantly subendocardial location) in the remote zone + (r=0.60; P=0.011). Likewise, wall thickening in the remote + zone correlated with MD in the remote zone (r=-0.72; + P=0.001) and mean helix angles in the infarct-adjacent zone + (r=0.72; P=0.001).Diffusion-tensor cardiac MR suggests that + sequential zonal improvement of tissue integrity and fiber + architecture remodeling both associate with sequential + recovery of zonal wall thickening of the left ventricle + from recent to chronic MI.}, + DOI = {10.1161/CIRCIMAGING.108.778902}, + Institution = {Faculty of Medicine, School of Medicine, National Yang + Ming University, Taipei, Taiwan, Republic of China. + wu.mingting@gmail.com}, + Keywords = {Aged; Diffusion Magnetic Resonance Imaging; Heart + Ventricles, pathology; Humans; Male; Middle Aged; + Myocardial Infarction, pathology/physiopathology; + Ventricular Function, Left; Ventricular Remodeling}, + Language = {eng}, + medline-pst = {ppublish}, + owner = {stoeckc}, + pii = {2/1/32}, + pmid = {19808562}, + timestamp = {2015.07.28}, + URL = {http://dx.doi.org/10.1161/CIRCIMAGING.108.778902} +} + +@Article{ wyman_current_1988, + Title = {Current Complications of Diagnostic and Therapeutic + Cardiac Catheterization}, + Volume = {12}, + Number = {6}, + JournalTitle = {Journal of the American College of Cardiology}, + Year = {1988}, + Pages = {1400--1406}, + Author = {Wyman, R. Michael and Safian, Robert D. and Portway, + Valerie and Skillman, John J. and McKAY, RAYMOND G. and + Baim, Donald S.} +} + +@Article{ xi-etal-2012, + Title = "The estimation of patient-specific cardiac diastolic + functions from clinical measurements", + Journal = "Medical Image Analysis ", + Volume = "17", + Number = "2", + Pages = "133 - 146", + Year = "2013", + Note = "", + ISSN = "1361-8415", + DOI = "http://dx.doi.org/10.1016/j.media.2012.08.001", + URL = "http://www.sciencedirect.com/science/article/pii/S1361841512001004", + Author = "Xi, J. and Lamata, P. and Niederer, S. and Land, S. and + Shi, W. and Zhuang, X. and Ourselin, S. and Duckett, S. G. + and Shetty, A. K. and Rinaldi, C. A. and Rueckert, D. and + Razavi, R. and Smith, N. P.", + Keywords = "Diastolic heart failure" +} + +@Article{ xi-moireau-chapelle-smith-11, + Author = {Xi, J. and Lamata, P. and Lee, J. and Moireau, P. and + Chapelle, D. and Smith, N.}, + date-added = {2011-06-17 18:47:48 +0200}, + date-modified = {2011-06-17 19:01:34 +0200}, + Journal = {Journal of the Mechanical Behavior of Biomedical + Materials}, + Title = {Myocardial transversely isotropic material parameter + estimation from in-silico measurements based on + reduced-order unscented Kalman filter}, + Year = {2011} +} + +###Article{ xi-moireau-chapelle-smith-11, + Author = {Xi, J. and Lamata, P. and Lee, J. and Moireau, P. and + Chapelle, D. and Smith, N.}, + date-added = {2011-06-17 18:47:48 +0200}, + date-modified = {2011-06-17 19:01:34 +0200}, + Journal = {Journal of the Mechanical Behavior of Biomedical + Materials}, + Title = {Myocardial transversely isotropic material parameter + estimation from in-silico measurements based on + reduced-order unscented Kalman filter}, + Year = {2011} +} + +@Article{ xie2013circ, + Title = {Pathological Ventricular Remodeling: Therapies: Part 2 of + 2}, + Author = {Xie, Min and Burchfield, Jana S. and Hill, Joseph A.}, + Journal = {Circulation}, + Year = {2013}, + Number = {9}, + Pages = {1021-1030}, + Volume = {128}, + DOI = {10.1161/CIRCULATIONAHA.113.001879}, + EPrint = {http://circ.ahajournals.org/content/128/9/1021.full.pdf+html}, + File = {xie13.pdf:xie13.pdf:PDF}, + timestamp = {2015/09/20}, + URL = {http://circ.ahajournals.org/content/128/9/1021.short} +} + +@Article{ xu2011ass, + Title = {Assessment of stiffness changes in the ex vivo porcine + aortic wall using magnetic resonance elastography.}, + Author = {Xu, L. and Chen, J. and Yin, M. and Glaser, K.J. and Chen, + Q. and Woodrum, D.A. and Ehman, R.L.}, + Journal = {Magnetic Resonance Imaging}, + Year = {2012}, + Volume = {30}, + Pages = {122--127}, + Abstract = {Magnetic resonance elastography (MRE) is a noninvasive + phase-contrast technique for estimating the mechanical + properties of tissues by imaging propagating mechanical + waves within the tissue. In this study, we hypothesize that + changes in arterial wall stiffness, experimentally induced + by formalin fixation, can be measured using MRE in ex vivo + porcine aortas. In agreement with our hypothesis, the + significant stiffness increase after sample fixation was + clearly demonstrated by MRE and confirmed by mechanical + testing. The results indicate that MRE can be used to + examine the stiffness changes of the aorta. This study has + provided evidence of the effectiveness of using MRE to + directly assess the stiffness change in aortic wall. The + results offer motivation to pursue MRE as a noninvasive + method for the evaluation of arterial wall mechanical + properties. } +} + +###Article{ xu2011ass, + Title = {Assessment of stiffness changes in the ex vivo porcine + aortic wall using magnetic resonance elastography.}, + Author = {Xu, L. and Chen, J. and Yin, M. and Glaser, K.J. and Chen, + Q. and Woodrum, D.A. and Ehman, R.L.}, + Journal = {Magnetic Resonance Imaging}, + Year = {2012}, + Volume = {30}, + Pages = {122--127}, + Abstract = {Magnetic resonance elastography (MRE) is a noninvasive + phase-contrast technique for estimating the mechanical + properties of tissues by imaging propagating mechanical + waves within the tissue. In this study, we hypothesize that + changes in arterial wall stiffness, experimentally induced + by formalin fixation, can be measured using MRE in ex vivo + porcine aortas. In agreement with our hypothesis, the + significant stiffness increase after sample fixation was + clearly demonstrated by MRE and confirmed by mechanical + testing. The results indicate that MRE can be used to + examine the stiffness changes of the aorta. This study has + provided evidence of the effectiveness of using MRE to + directly assess the stiffness change in aortic wall. The + results offer motivation to pursue MRE as a noninvasive + method for the evaluation of arterial wall mechanical + properties. } +} + +@Article{ yang_computation_1996, + Title = {Computation of Flow Pressure Fields from Magnetic + Resonance Velocity Mapping}, + Volume = {36}, + Number = {4}, + JournalTitle = {Magnetic resonance in medicine}, + Year = {1996}, + Pages = {520--526}, + Author = {Yang, Guang-Zhong and Kilner, Philip J. and Wood, Nigel B. + and Underwood, S. Richard and Firmin, David N.} +} + +@Article{ zeinali-davarani2011cmbbe, + Title = {A finite element model of stress-mediated vascular + adaptation: application to abdominal aortic aneurysms}, + Author = { Shahrokh Zeinali-Davarani and Azadeh Sheidaei and Seungik + Baek }, + Journal = {Computer Methods in Biomechanics and Biomedical + Engineering}, + Year = {2011}, + Number = {9}, + Pages = {803-817}, + Volume = {14}, + DOI = {10.1080/10255842.2010.495344}, + EPrint = { http://dx.doi.org/10.1080/10255842.2010.495344 + + }, + File = {zeinali-davarani11.pdf:zeinali-davarani11.pdf:PDF}, + URL = { http://dx.doi.org/10.1080/10255842.2010.495344 + + } +} + +@Article{ zeinali-davarani_raguin_vorp_baek_2010, + Title = {Identification of in vivo material and geometric + parameters of a human aorta: toward patient-specific + modeling of abdominal aortic aneurysm.}, + Volume = {10}, + Number = {5}, + Journal = {Biomechanics and Modeling in Mechanobiology}, + Author = {Zeinali-Davarani, S. and Raguin, L.G. and Vorp, D.A. and + Baek, S.}, + Year = {2010}, + Pages = {689--99} +} + +###Article{ zeinali-davarani_raguin_vorp_baek_2010, + Title = {Identification of in vivo material and geometric + parameters of a human aorta: toward patient-specific + modeling of abdominal aortic aneurysm.}, + Volume = {10}, + URL = {http://www.ncbi.nlm.nih.gov/pubmed/21053043}, + Number = {5}, + Journal = {Biomechanics and Modeling in Mechanobiology}, + Author = {Zeinali-Davarani, S. and Raguin, L.G. and Vorp, D.A. and + Baek, S.}, + Year = {2010}, + Pages = {689--99} +} + +@InProceedings{ zhang-bathe-01, + Author = {Zhang, H. and Bathe, K.J. }, + BookTitle = {Computational Fluid and Solid Mechanics}, + code = {fsi15}, + Editor = {K.J. Bathe}, + Pages = {1440-1443}, + Publisher = {Elsevier}, + Title = {Direct and iterative computing of fluid flows fully + coupled with structures}, + Year = {2001} +} + +###InProceedings{ zhang-bathe-01, + Author = {Zhang, H. and Bathe, K.J. }, + BookTitle = {Computational Fluid and Solid Mechanics}, + code = {fsi15}, + Editor = {K.J. Bathe}, + Pages = {1440-1443}, + Publisher = {Elsevier}, + Title = {Direct and iterative computing of fluid flows fully + coupled with structures}, + Year = {2001} +} + +@Article{ zhang-kuang-00, + Author = {Zhang, J.B. and Kuang, Z.B.}, + Journal = {Jour. of Biomechanics}, + Pages = {355-360}, + Title = {Study on blood constitutive parameters in different blood + constitutive equations}, + Volume = {33}, + Year = {2000} +} + +###Article{ zhang-kuang-00, + Author = {Zhang, J.B. and Kuang, Z.B.}, + Journal = {Jour. of Biomechanics}, + Pages = {355-360}, + Title = {Study on blood constitutive parameters in different blood + constitutive equations}, + Volume = {33}, + Year = {2000} +} + +@Article{ zhang-zhang-eal-03, + Author = {Zhang, H. and Zhang, X. and Ji, S. and Guo, Y. and + Ledezma, G. and Elabbasi, N. and deCougny, H.}, + Journal = {Comp. \& Struct.}, + Number = {8--11}, + Pages = {1071--1085}, + Title = {Recent development of fluid-structure interaction + capabilities in the {ADINA} system}, + Volume = {81}, + Year = {2003} +} + +###Article{ zhang-zhang-eal-03, + Author = {Zhang, H. and Zhang, X. and Ji, S. and Guo, Y. and + Ledezma, G. and Elabbasi, N. and deCougny, H.}, + Journal = {Comp. \& Struct.}, + Number = {8--11}, + Pages = {1071--1085}, + Title = {Recent development of fluid-structure interaction + capabilities in the {ADINA} system}, + Volume = {81}, + Year = {2003} +} + +@Article{ zhang-zhao-01, + Author = {Zhang, B. and Zhao, Y.}, + code = {por15}, + Journal = {Int. J. Numer. Meth. Engng}, + Pages = {2443-2457}, + Title = {Simulations of flow through fluid/porous layers by a + characteristic-based method on unstructured grids}, + Volume = {50}, + Year = {2001} +} + +###Article{ zhang-zhao-01, + Author = {Zhang, B. and Zhao, Y.}, + code = {por15}, + Journal = {Int. J. Numer. Meth. Engng}, + Pages = {2443-2457}, + Title = {Simulations of flow through fluid/porous layers by a + characteristic-based method on unstructured grids}, + Volume = {50}, + Year = {2001} +} + +@Article{ zhang-zuazua-07, + Author = {Zhang, X. and Zuazua, E.}, + date-added = {2012-02-27 13:53:27 +0000}, + date-modified = {2012-02-27 13:53:55 +0000}, + DOI = {10.1007/s00205-006-0020-x}, + Journal = {Arch. Ration. Mech. Anal.}, + Number = {1}, + Pages = {49--120}, + Title = {Long-time behavior of a coupled heat-wave system arising + in fluid-structure interaction}, + Volume = {184}, + Year = {2007} +} + +###Article{ zhang-zuazua-07, + Author = {Zhang, X. and Zuazua, E.}, + date-added = {2012-02-27 13:53:27 +0000}, + date-modified = {2012-02-27 13:53:55 +0000}, + DOI = {10.1007/s00205-006-0020-x}, + Journal = {Arch. Ration. Mech. Anal.}, + Number = {1}, + Pages = {49--120}, + Title = {Long-time behavior of a coupled heat-wave system arising + in fluid-structure interaction}, + Volume = {184}, + Year = {2007}, + bdsk-url-1 = {http://dx.doi.org/10.1007/s00205-006-0020-x} +} + +@Article{ zhu-quartapelle-loula-96, + Author = {Zhu, J. and Quartapelle, L. and Loula, A.F.D.}, + Journal = {C. R. Acad. Sci. Paris, s{\'e}rie 1}, + Pages = {971-976}, + Title = {{Uncoupled variational formulation of a vector Poisson + problem}}, + Volume = {323}, + Year = {1996} +} + +###Article{ zhu-quartapelle-loula-96, + Author = {Zhu, J. and Quartapelle, L. and Loula, A.F.D.}, + Journal = {C. R. Acad. Sci. Paris, s{\'e}rie 1}, + Pages = {971-976}, + Title = {{Uncoupled variational formulation of a vector Poisson + problem}}, + Volume = {323}, + Year = {1996} +} + +@Unpublished{ zhu2, + Author = {Zhu, J. and Loula, A.F.D. and Quartapelle, L.}, + Title = {Finite element analysis of a nonstandard vector poisson + problem} +} + +###Unpublished{ zhu2, + Author = {Zhu, J. and Loula, A.F.D. and Quartapelle, L.}, + Note = {Preprint}, + Title = {Finite element analysis of a nonstandard vector poisson + problem} +} + +@Article{ zienkiewicz-smeler-peraire-90, + Author = {Zienkiewicz, O.C. and Smeler, J. and Peraire, J.}, + Journal = {Comp. Meth. Appl. Mech. Engng.}, + Pages = {105-121}, + Title = {Compressible and incompressible flow ; an algorithm for + all seasons}, + Volume = {78}, + Year = {1990} +} + +###Article{ zienkiewicz-smeler-peraire-90, + Author = {Zienkiewicz, O.C. and Smeler, J. and Peraire, J.}, + Journal = {Comp. Meth. Appl. Mech. Engng.}, + Pages = {105-121}, + Title = {Compressible and incompressible flow ; an algorithm for + all seasons}, + Volume = {78}, + Year = {1990} +} + +@Article{ zilberszac2017asymptomatic, + Title = {Asymptomatic severe aortic stenosis in the elderly}, + Author = {Zilberszac, R. and Gabriel, H. and Schemper, M. and + Laufer, G. and Maurer, G. and Rosenhek, R.}, + Journal = {JACC: Cardiovascular Imaging}, + Volume = {10}, + Number = {1}, + Pages = {43--50}, + Year = {2017}, + Publisher = {Elsevier} +} diff --git a/conferences/cbme2022/cmbe21.cls b/conferences/cbme2022/cmbe21.cls new file mode 100644 index 0000000..87c730b --- /dev/null +++ b/conferences/cbme2022/cmbe21.cls @@ -0,0 +1,125 @@ +%% CMBE class 2-4 pages abstract (CMBE17 Pittsburgh) +%% 01/11/2014 Etienne Boileau +%% ** DO NOT MODIFY ** +% +\NeedsTeXFormat{LaTeX2e} +\DeclareOption{10pt}{\OptionNotUsed} +\DeclareOption{12pt}{\OptionNotUsed} +\DeclareOption{twocolumn}{\OptionNotUsed} +\DeclareOption*{\PassOptionsToClass{\CurrentOption}{article}} +\ProcessOptions\relax +% +\LoadClass[11pt]{article} +% +\RequirePackage[blocks]{authblk} +\renewcommand\Authfont{\bfseries} +\renewcommand\Affilfont{\normalfont\small} +\setlength{\affilsep}{0.5ex} +% +\RequirePackage{geometry} +\geometry{a4paper,total={155mm,262mm},top=17.5mm,left=27.5mm} +% +\RequirePackage{times,calc,indentfirst} +% +\renewcommand{\maketitle}{% +\newpage +\thispagestyle{empty} +\begin{minipage}[t][28.4pt][t]{454.4pt} +\begin{flushright} +% HEADER % +{% +\footnotesize% +7\textsuperscript{th} International Conference on Computational and Mathematical Biomedical Engineering - CMBE2021\\[2.84pt]% +27--29 June 2022, Italy\\% +P.~Nithiarasu and C.~Vergara (Eds.)% +}% +\end{flushright} +\end{minipage} +% +\begin{center} +\vspace{2ex} +{% +\fontsize{14}{18}\selectfont +\bfseries +\MakeUppercase{\@title} +\par +}% +\vspace{2ex} +{% +\@author +\par +}% +\end{center} +\vspace{1ex} +{% +\noindent\textbf{\centering SUMMARY\\[2.84pt]\space}{\textrm\@summary} +\par +}% +\vspace{2ex} +\noindent\textbf{Key words:\space}{\it \@keywords} +\par +\vspace{4ex} +}% +% +\newcommand{\keywords}[1]{\gdef\@keywords{#1}} +\newcommand{\summary}[1]{\gdef\@summary{#1}} +% +\def\sectionLevel{1} +\def\sectionIndent{0pt} +\def\sectionSpaceBefore{12pt} +\def\sectionSpaceAfter{6pt} +\def\sectionStyle{\normalsize\bfseries\MakeUppercase} +\def\subsectionStyle{\normalsize\bfseries} +% +\renewcommand{\section}{% + \@startsection{section}{\sectionLevel}{\sectionIndent}{\sectionSpaceBefore}% + {\sectionSpaceAfter}{\sectionStyle}}% +% +\renewcommand{\subsection}{% + \@startsection{subsection}{\sectionLevel}{\sectionIndent}{\sectionSpaceBefore}% + {\sectionSpaceAfter}{\subsectionStyle}}% +% +\renewcommand{\@makecaption}[2]{% + \vskip\abovecaptionskip + \sbox\@tempboxa{\normalsize\fontsize{10}{12}\selectfont {\bf #1}: #2}% + \ifdim \wd\@tempboxa >\hsize + \normalsize\fontsize{10}{12}\selectfont #1: #2\par + \else + \global \@minipagefalse + \hb@xt@\hsize{\hfil\box\@tempboxa\hfil}% + \fi + \vskip\belowcaptionskip} +% +\renewenvironment{thebibliography}[1] + {% + \begin{center}% + \section*{\MakeUppercase\refname\@mkboth{\MakeUppercase\refname}{\MakeUppercase\refname}}% + \end{center}% + \list{\@biblabel{\@arabic\c@enumiv}}% + {\settowidth\labelwidth{\@biblabel{#1}}% + \leftmargin\labelwidth + \advance\leftmargin\labelsep + \@openbib@code + \usecounter{enumiv}% + \let\p@enumiv\@empty + \renewcommand\theenumiv{\@arabic\c@enumiv}}% + \sloppy + \clubpenalty4000 + \@clubpenalty \clubpenalty + \widowpenalty4000% + \sfcode`\.\@m}% + {\def\@noitemerr + {\@latex@warning{Empty `thebibliography' environment}}% + \endlist} +% +\setlength{\parindent}{0em} +\setlength{\parskip}{5pt plus 2pt minus 1 pt} +% +\AtBeginDocument{% + \pagestyle{empty} + \maketitle + \let\maketitle\relax +} +% +\endinput +% diff --git a/tex/.gitignore b/tex/.gitignore deleted file mode 100644 index f09d893..0000000 --- a/tex/.gitignore +++ /dev/null @@ -1,23 +0,0 @@ -*.aux -*.log -*.pdf -*.synctex.gz -*.sh - -# Submission 1 -1_submission/*.synctex.gz -1_submission/*.log -1_submission/*.aux -1_submission/*.pdf - -# Submission 2 -2_submission/*.synctex.gz -2_submission/*.log -2_submission/*.aux -2_submission/*.pdf - -# HAL Submission -hal_submission/*.synctex.gz -hal_submission/*.log -hal_submission/*.aux -hal_submission/*.pdf \ No newline at end of file