diff --git a/README.md b/README.md index 4045ae3..9054a57 100644 --- a/README.md +++ b/README.md @@ -1,12 +1,27 @@ -In this folder you can find 4 scripts that can be used to transfrom 24/7 .cwa accelerometer data to intensity plots. The methods are based on the Rowland et al. 2018 article 'Beyond Cut Points: Accelerometer Metrics that Capture the Physical Activity Profile. +In this folder you can find 4 scripts that can be used to transfrom 24/7 .csv accelerometer data to intensity plots. The methods are based on the Rowland et al. 2018 article 'Beyond Cut Points: Accelerometer Metrics that Capture the Physical Activity Profile. The scripts should be run in the following order: -1. DailyCutter.py - ... +1. DailyCutter.py - This script is used to transform single week .csv files (input) into individual day-files (output) + The WeekPath should be set to the folder containing the week-files of the patient + The ScriptPath should be set to the folder containing the 'formules.py' script. This script holds + all functions used in the analysis. + +2. plotter.py - This is the second script used in the analysis and is the script that performs the most. + Before getting started, the os.chdir(___) should be set to the 'formules.py' pathway + The rootdir should be set to the folder containing 7 individual .csv day-files + The PtName variable should be set accordingly to the name of the files used. This possibly changes + between different weeks/different patients. + Finally, the CheckWeel.to_csv(___) should be filled with the used weeknumber, to save the + parameters of the trendline for each different week. + After changing these variables to your liking, the script should run automatically, using the + folder with individual days as input and saving the plots for individual days as well as an + overview of the entire week as output. + +3. Totalplotter.py - After running the plotter.py script you should have ended up with 6 .csv files with parameters + of the trendlines. Make sure that these files are saved within the same folder and set the path + of this folder as the rootdir in this script. + Change the names in the plt.title(___) and plt.savefig(___) commands accordingly and run the scripts + The output will be a plot of all 6 weeks in one figure. -2. plotter.py - ... - - -3. Totalplotter.py - ... -