120 lines
4.2 KiB
Matlab
120 lines
4.2 KiB
Matlab
classdef CREClass < handle
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properties
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Data; % the data set to get the CRE off
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nBin; %number of bins for the reference
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Monitor=true; %set to true to get intermediat results/figures
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UseHistProxy=true; % set this to get a proxy of the survival function using the hist function
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end
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properties %to be made read only
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CRE
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RB
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P_RB
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end
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properties (Hidden)
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WaitBarHandle;
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end
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properties (Constant,Hidden)
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alpha=1; %needed for the scaled cummulative redual entropy as defined in zografoss. Will be implemented in the future. (I hope)
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beta=1; %they are currently obsolete.
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% FeedBackOptions={'CRE','RB','All'}
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end
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%% constructor
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methods %constructor
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function obj = CREClass(varargin)
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obj.Data=[];
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obj.nBin=[];
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%obj.FeedBack={'CRE'};
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if nargin==0;return;end % if no input arguments are given, just create an empty instance
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if ischar(varargin{1}) %assume number value pairs.
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if nargin<=2; error('please use number value pairs' ); end
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for k=2:2:nargin
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switch lower(varargin{k-1})
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case {'ref','data'}
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obj.Data=varargin{k};
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case {'nbin','bin'}
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obj.nBin=varargin{k};
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otherwise
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error('invalid variable name');
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end
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end
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else
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if nargin>=1
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obj.Data=varargin{1};
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end
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if nargin==2
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obj.nBin=varargin{2};
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end
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end
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end
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end
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%% set functions
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methods
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function set.Data(obj,val)
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if isnumeric(val)
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obj.Data=val;
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else
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error('please enter numeric array/matrix as reference');
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end
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end
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function set.nBin(obj,val)
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if isnumeric(val)
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obj.nBin=val;
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else
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error('please enter numeric array or value as bin definition');
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end
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end
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end
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%% core function(s)
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methods
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function Calc(obj)
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if isempty(obj.Data)
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warning('nothing to do');
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return;
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end
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if obj.UseHistProxy
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if isempty(obj.nBin)
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obj.nBin=floor(numel(obj.Data)./10);
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end
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[N,bin]=hist(obj.Data(:),obj.nBin);
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N=transpose(N);
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P=N./sum(N);
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CP=cumsum(P);
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FC=1-CP;
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FC(FC<0)=0;
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dl=ones(size(FC))./numel(FC);
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else
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q=sort(unique(obj.Data(:)));
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FC=zeros(size(q));
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dl=zeros(size(q));
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for k=1:numel(q)
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FC(k)=sum(obj.Data(:)>=q(k));
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if k==1
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dl(k)=(q(k+1)-q(k))/2; %should I divide by 2?
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elseif k==numel(q)
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dl(k)=(q(k)-q(k-1))/2;
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else
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dl(k)=(q(k+1)-q(k))/2+(q(k)-q(k-1))/2;
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end
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end
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FC=FC./numel(obj.Data);
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end
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LogFC=log(FC);
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LogFC(~isfinite(LogFC))=0;%the log of 0 is -inf. however in Fc.*logFc it should end up as 0. to avoid conflicts removing the -inf
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if any(isnan(FC));keyboard;end
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obj.CRE=-transpose(dl)*(FC.*LogFC)./(transpose(dl)*FC); %CRE zografos
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%% get the RB
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dl(FC>0.5)=0; %set the weight for all in the histogram to the left side (i.e. <p50) to 0
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CRE_Med_Inf=-transpose(dl)*(FC.*LogFC)./(transpose(dl)*FC); %CRE zografos
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ind=find(exp(-CRE_Med_Inf)>=FC,1,'first');
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if obj.UseHistProxy
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obj.P_RB=FC(ind);
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obj.RB=bin(ind);
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else
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SortData=sort(obj.Data);
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obj.RB=SortData(ind);
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obj.P_RB=FC(ind);
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end
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end
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end
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end |