Merge branch 'add-latest-and-stable' of p281392/molgenis-ops-rancher into master

templates/molgenis/0/README.md

@@ -1,17 +1,16 @@
 # MOLGENIS
-### Flexible software for scientific data
+Flexible software for scientific data
-#### Process, manage, query, annotate, integrate, analyse, share
 
+## Rancher configuration
 This template creates a MOLGENIS stack on top of Rancher. It creates 3 docker services:
 
-- MOLGENIS instance
+- MOLGENIS
-- Postgress instance
+- Postgress
-- ElasticSearch instance
+- ElasticSearch
-
-## Usage:
 
+## Usage
 - Select MOLGENIS from catalog
-- Enter the name of the replica set
+- The stack-name must not be altered (this is hardcoded in de docker-compose file) 
-- Click deploy
+- Click *Launch*
 
 MOLGENIS can now be accessed over the Rancher network.

templates/molgenis/0/docker-compose.yml

@@ -1,21 +1,86 @@
-app:
+  molgenis:
-  image: registry.webhosting.rug.nl/molgenis:2.0.1
+    image: registry.webhosting.rug.nl/molgenis/molgenis:latest
-  ports:
+    ports:
-    - 8081:8080
+      - 8080
-  links:
+    links:
-    - db
+      - postgres
-  volumes:
+      - elasticsearch
-    - app-data:/opt/molgenis
+    volumes_from:
-  labels:
+      - molgenis-data
-    io.rancher.container.create_agent: true
+    environment:
-    io.rancher.scheduler.global: true
+      - "db_uri=jdbc:postgresql://postgres/molgenis?reWriteBatchedInserts=true&autosave=CONSERVATIVE"
-    traefik.frontend.rule: Host:${DOMAINS}
+      - "db_driver=org.postgresql.Driver"
-    traefik.backend: ${TRAEFIK_BACKEND}
+      - "db_user=molgenis"
-    traefik.enable: true
+      - "db_password=molgenis"
-    traefik.port: 8080
+      - "admin.password=admin"
-db:
+      - "elasticsearch.cluster.name=molgenis"
-  image: registry.webhosting.rug.nl/molgenis-postgres:2.0.1
+      - "elasticsearch.transport.addresses=elasticsearch:9300"
-  expose:
+    labels:
-    - 5432
+      io.rancher.sidekicks: molgenis-data
-  volumes:
+      io.rancher.container.pull_image: always
-    - db-data:/var/lib/postgresql/data
+      io.rancher.scheduler.global: true
+      traefik.frontend.rule: Host:${DOMAINS}
+      traefik.backend: ${TRAEFIK_BACKEND}
+      traefik.enable: true
+      traefik.port: 8080
+
+  postgres:
+    image: postgres:9.6-alpine
+    environment:
+      - POSTGRES_USER=molgenis
+      - POSTGRES_PASSWORD=molgenis
+      - POSTGRES_DB=molgenis
+      - PGDATA=/var/lib/postgresql/data/pgdata
+    volumes_from:
+      - postgres-data
+    ports:
+      - 5432
+    labels:
+      io.rancher.sidekicks: postgres-data
+      io.rancher.scheduler.global: true
+
+  opencpu:
+    image: registry.webhosting.rug.nl/molgenis/molgenis-opencpu:latest
+    ports:
+      - 8004:8004
+
+  elasticsearch:
+    image: docker.elastic.co/elasticsearch/elasticsearch:5.5.1
+    environment:
+      - "cluster.name=molgenis"
+      - "bootstrap.memory_lock=true"
+      - "ES_JAVA_OPTS=-Xms1g -Xmx1g"
+      - "xpack.security.enabled=false"
+    ulimits:
+      memlock:
+        soft: -1
+        hard: -1
+#    volumes_from:
+#      - elasticsearch-data
+    ports:
+       - 9200:9200
+       - 9300:9300
+    labels:
+      #io.rancher.sidekicks: elasticsearch-data
+      io.rancher.scheduler.global: true
+
+  postgres-data:
+    image: busybox
+    labels:
+      io.rancher.container.start_once: true
+    volumes:
+      - /var/lib/postgresql/data/pgdata
+
+  molgenis-data:
+    image: busybox
+    labels:
+      io.rancher.container.start_once: true
+    volumes:
+      - /opt/molgenis
+
+#  elasticsearch-data:
+#    image: busybox
+#    labels:
+#      io.rancher.container.start_once: true
+#    volumes:
+#      - /usr/share/elasticsearch/data

templates/molgenis/0/rancher-compose.yml

@@ -1,6 +1,6 @@
 .catalog:
   name: molgenis
-  version: v2.0.0
+  version: latest
   description: Molgenis
   minimum_rancher_version: v1.6.3
   questions:
@@ -25,4 +25,4 @@
     unhealthy_threshold: 3
     request_line: 'GET / HTTP/1.0'
     healthy_threshold: 2
-    response_timeout: 5000
+    response_timeout: 5000

templates/molgenis/1/README.md

@@ -1,13 +1,12 @@
 # MOLGENIS
-
 Flexible software for scientific data
 
 ## Rancher configuration
 This template creates a MOLGENIS stack on top of Rancher. It creates 3 docker services:
 
-- MOLGENIS 
+- MOLGENIS
-  - Elasticsearch is packaged with MOLGENIS
 - Postgress
+- ElasticSearch
 
 ## Usage
 - Select MOLGENIS from catalog

templates/molgenis/1/docker-compose.yml

@@ -1,42 +1,86 @@
-app:
+  molgenis:
-  image: registry.webhosting.rug.nl/molgenis/molgenis:4.1.0
+    image: registry.webhosting.rug.nl/molgenis/molgenis:stable
-  ports:
+    ports:
-    - 8081:8080
+      - 8080
-  links:
+    links:
-    - db
+      - postgres
-  volumes_from:
+      - elasticsearch
-    - molgenis-data
+    volumes_from:
-  labels:
+      - molgenis-data
-    io.rancher.sidekicks: molgenis-data
+    environment:
-    io.rancher.scheduler.global: true
+      - "db_uri=jdbc:postgresql://postgres/molgenis?reWriteBatchedInserts=true&autosave=CONSERVATIVE"
-    traefik.frontend.rule: Host:${DOMAINS}
+      - "db_driver=org.postgresql.Driver"
-    traefik.backend: ${TRAEFIK_BACKEND}
+      - "db_user=molgenis"
-    traefik.enable: true
+      - "db_password=molgenis"
-    traefik.port: 8080
+      - "admin.password=admin"
+      - "elasticsearch.cluster.name=molgenis"
+      - "elasticsearch.transport.addresses=elasticsearch:9300"
+    labels:
+      io.rancher.sidekicks: molgenis-data
+      io.rancher.container.pull_image: always
+      io.rancher.scheduler.global: true
+      traefik.frontend.rule: Host:${DOMAINS}
+      traefik.backend: ${TRAEFIK_BACKEND}
+      traefik.enable: true
+      traefik.port: 8080
 
-  db:
+  postgres:
     image: postgres:9.6-alpine
     environment:
       - POSTGRES_USER=molgenis
       - POSTGRES_PASSWORD=molgenis
       - POSTGRES_DB=molgenis
-    expose:
+      - PGDATA=/var/lib/postgresql/data/pgdata
-      - 5432
+    volumes_from:
-     volumes_from:
       - postgres-data
+    ports:
+      - 5432
     labels:
       io.rancher.sidekicks: postgres-data
       io.rancher.scheduler.global: true
 
- postgres-data:
+  opencpu:
+    image: registry.webhosting.rug.nl/molgenis/molgenis-opencpu:stable
+    ports:
+      - 8004:8004
+
+  elasticsearch:
+    image: docker.elastic.co/elasticsearch/elasticsearch:5.5.1
+    environment:
+      - "cluster.name=molgenis"
+      - "bootstrap.memory_lock=true"
+      - "ES_JAVA_OPTS=-Xms1g -Xmx1g"
+      - "xpack.security.enabled=false"
+    ulimits:
+      memlock:
+        soft: -1
+        hard: -1
+#    volumes_from:
+#      - elasticsearch-data
+    ports:
+       - 9200:9200
+       - 9300:9300
+    labels:
+      #io.rancher.sidekicks: elasticsearch-data
+      io.rancher.scheduler.global: true
+
+  postgres-data:
     image: busybox
     labels:
       io.rancher.container.start_once: true
     volumes:
       - /var/lib/postgresql/data/pgdata
+
   molgenis-data:
     image: busybox
     labels:
       io.rancher.container.start_once: true
     volumes:
-      - /opt/molgenis
+      - /opt/molgenis
+
+#  elasticsearch-data:
+#    image: busybox
+#    labels:
+#      io.rancher.container.start_once: true
+#    volumes:
+#      - /usr/share/elasticsearch/data

templates/molgenis/1/rancher-compose.yml

@@ -1,6 +1,6 @@
 .catalog:
   name: molgenis
-  version: v4.1.0
+  version: stable
   description: Molgenis
   minimum_rancher_version: v1.6.3
   questions:
@@ -25,4 +25,4 @@
     unhealthy_threshold: 3
     request_line: 'GET / HTTP/1.0'
     healthy_threshold: 2
-    response_timeout: 5000
+    response_timeout: 5000

templates/molgenis/2/README.md

@@ -1,16 +1,17 @@
 # MOLGENIS
-Flexible software for scientific data
+### Flexible software for scientific data
+#### Process, manage, query, annotate, integrate, analyse, share
 
-## Rancher configuration
 This template creates a MOLGENIS stack on top of Rancher. It creates 3 docker services:
 
-- MOLGENIS
+- MOLGENIS instance
-- Postgress
+- Postgress instance
-- ElasticSearch
+- ElasticSearch instance
+
+## Usage:
 
-## Usage
 - Select MOLGENIS from catalog
-- The stack-name must not be altered (this is hardcoded in de docker-compose file) 
+- Enter the name of the replica set
-- Click *Launch*
+- Click deploy
 
 MOLGENIS can now be accessed over the Rancher network.

templates/molgenis/2/docker-compose.yml

@@ -1,79 +1,21 @@
-  molgenis:
+app:
-    image: registry.webhosting.rug.nl/molgenis/molgenis:5.2.0
+  image: registry.webhosting.rug.nl/molgenis:2.0.1
-    ports:
+  ports:
-      - 8080
+    - 8081:8080
-    links:
+  links:
-      - postgres
+    - db
-      - elasticsearch
+  volumes:
-    volumes_from:
+    - app-data:/opt/molgenis
-      - molgenis-data
+  labels:
-    labels:
+    io.rancher.container.create_agent: true
-      io.rancher.sidekicks: molgenis-data
+    io.rancher.scheduler.global: true
-      io.rancher.container.pull_image: always
+    traefik.frontend.rule: Host:${DOMAINS}
-      io.rancher.scheduler.global: true
+    traefik.backend: ${TRAEFIK_BACKEND}
-      traefik.frontend.rule: Host:${DOMAINS}
+    traefik.enable: true
-      traefik.backend: ${TRAEFIK_BACKEND}
+    traefik.port: 8080
-      traefik.enable: true
+db:
-      traefik.port: 8080
+  image: registry.webhosting.rug.nl/molgenis-postgres:2.0.1
-
+  expose:
-  postgres:
+    - 5432
-    image: postgres:9.6-alpine
+  volumes:
-    environment:
+    - db-data:/var/lib/postgresql/data
-      - POSTGRES_USER=molgenis
-      - POSTGRES_PASSWORD=molgenis
-      - POSTGRES_DB=molgenis
-      - PGDATA=/var/lib/postgresql/data/pgdata
-    volumes_from:
-      - postgres-data
-    ports:
-      - 5432
-    labels:
-      io.rancher.sidekicks: postgres-data
-      io.rancher.scheduler.global: true
-
-  elasticsearch:
-    image: docker.elastic.co/elasticsearch/elasticsearch:5.5.1
-    environment:
-      - "cluster.name=molgenis"
-      - "bootstrap.memory_lock=true"
-      - "ES_JAVA_OPTS=-Xms1g -Xmx1g"
-      - "xpack.security.enabled=false"
-    ulimits:
-      memlock:
-        soft: -1
-        hard: -1
-#    volumes_from:
-#      - elasticsearch-data
-    ports:
-       - 9200:9200
-       - 9300:9300
-#    labels:
-      #io.rancher.sidekicks: elasticsearch-data
-
-  opencpu:
-    image: registry.webhosting.rug.nl/molgenis/molgenis-opencpu:5.2.0
-    ports:
-      - 8004:8004
-
-  postgres-data:
-    image: busybox
-    labels:
-      io.rancher.container.start_once: true
-    volumes:
-      - /var/lib/postgresql/data/pgdata
-
-  molgenis-data:
-    image: busybox
-    labels:
-      io.rancher.container.start_once: true
-    volumes:
-      - /opt/molgenis
-
-#  elasticsearch-data:
-#    image: busybox
-#    labels:
-#      io.rancher.container.start_once: true
-#      io.rancher.scheduler.affinity:host_label: type=molgenis
-#      io.rancher.scheduler.affinity:container_label: io.rancher.stack.name=molgenis
-#    volumes:
-#      - /usr/share/elasticsearch/data

templates/molgenis/2/rancher-compose.yml

@@ -1,6 +1,6 @@
 .catalog:
   name: molgenis
-  version: v5.2.0
+  version: v2.0.0
   description: Molgenis
   minimum_rancher_version: v1.6.3
   questions:

templates/molgenis/3/README.md

@@ -1,12 +1,13 @@
 # MOLGENIS
+
 Flexible software for scientific data
 
 ## Rancher configuration
 This template creates a MOLGENIS stack on top of Rancher. It creates 3 docker services:
 
-- MOLGENIS
+- MOLGENIS 
+  - Elasticsearch is packaged with MOLGENIS
 - Postgress
-- ElasticSearch
 
 ## Usage
 - Select MOLGENIS from catalog

templates/molgenis/3/docker-compose.yml

@@ -1,78 +1,42 @@
-  molgenis:
+app:
-    image: registry.webhosting.rug.nl/molgenis/molgenis:6.0.0
+  image: registry.webhosting.rug.nl/molgenis/molgenis:4.1.0
-    ports:
+  ports:
-      - 8080
+    - 8081:8080
-    links:
+  links:
-      - postgres
+    - db
-      - elasticsearch
+  volumes_from:
-    volumes_from:
+    - molgenis-data
-      - molgenis-data
+  labels:
-    labels:
+    io.rancher.sidekicks: molgenis-data
-      io.rancher.sidekicks: molgenis-data
+    io.rancher.scheduler.global: true
-      io.rancher.container.pull_image: always
+    traefik.frontend.rule: Host:${DOMAINS}
-      io.rancher.scheduler.global: true
+    traefik.backend: ${TRAEFIK_BACKEND}
-      traefik.frontend.rule: Host:${DOMAINS}
+    traefik.enable: true
-      traefik.backend: ${TRAEFIK_BACKEND}
+    traefik.port: 8080
-      traefik.enable: true
-      traefik.port: 8080
 
-  postgres:
+  db:
     image: postgres:9.6-alpine
     environment:
       - POSTGRES_USER=molgenis
       - POSTGRES_PASSWORD=molgenis
       - POSTGRES_DB=molgenis
-      - PGDATA=/var/lib/postgresql/data/pgdata
+    expose:
-    volumes_from:
-      - postgres-data
-    ports:
       - 5432
+     volumes_from:
+      - postgres-data
     labels:
       io.rancher.sidekicks: postgres-data
       io.rancher.scheduler.global: true
 
-  elasticsearch:
+ postgres-data:
-    image: docker.elastic.co/elasticsearch/elasticsearch:5.5.1
-    environment:
-      - "cluster.name=molgenis"
-      - "bootstrap.memory_lock=true"
-      - "ES_JAVA_OPTS=-Xms1g -Xmx1g"
-      - "xpack.security.enabled=false"
-    ulimits:
-      memlock:
-        soft: -1
-        hard: -1
-#    volumes_from:
-#      - elasticsearch-data
-    ports:
-       - 9200:9200
-       - 9300:9300
-    labels:
-      #io.rancher.sidekicks: elasticsearch-data
-      io.rancher.scheduler.global: true
-
-  opencpu:
-    image: registry.webhosting.rug.nl/molgenis/molgenis-opencpu:6.0.0
-    ports:
-      - 8004:8004
-
-  postgres-data:
     image: busybox
     labels:
       io.rancher.container.start_once: true
     volumes:
       - /var/lib/postgresql/data/pgdata
-
   molgenis-data:
     image: busybox
     labels:
       io.rancher.container.start_once: true
     volumes:
-      - /opt/molgenis
+      - /opt/molgenis
-
-#  elasticsearch-data:
-#    image: busybox
-#    labels:
-#      io.rancher.container.start_once: true
-#    volumes:
-#      - /usr/share/elasticsearch/data

templates/molgenis/3/rancher-compose.yml

@@ -1,6 +1,6 @@
 .catalog:
   name: molgenis
-  version: v6.0.0
+  version: v4.1.0
   description: Molgenis
   minimum_rancher_version: v1.6.3
   questions:
@@ -25,4 +25,4 @@
     unhealthy_threshold: 3
     request_line: 'GET / HTTP/1.0'
     healthy_threshold: 2
-    response_timeout: 5000
+    response_timeout: 5000

templates/molgenis/4/docker-compose.yml

@@ -1,5 +1,5 @@
   molgenis:
-    image: registry.webhosting.rug.nl/molgenis/molgenis:7.0.0-SNAPSHOT
+    image: registry.webhosting.rug.nl/molgenis/molgenis:5.2.0
     ports:
       - 8080
     links:
@@ -7,13 +7,6 @@
       - elasticsearch
     volumes_from:
       - molgenis-data
-    environment:
-      - "db_uri=jdbc:postgresql://postgres/molgenis?reWriteBatchedInserts=true&autosave=CONSERVATIVE"
-      - "db_driver=org.postgresql.Driver"
-      - "db_user=molgenis"
-      - "db_password=molgenis"
-      - "elasticsearch.cluster.name=molgenis"
-      - "elasticsearch.transport.addresses=elasticsearch:9300"
     labels:
       io.rancher.sidekicks: molgenis-data
       io.rancher.container.pull_image: always
@@ -38,11 +31,6 @@
       io.rancher.sidekicks: postgres-data
       io.rancher.scheduler.global: true
 
-  opencpu:
-    image: registry.webhosting.rug.nl/molgenis/molgenis-opencpu:7.0.0-SNAPSHOT
-    ports:
-      - 8004:8004
-
   elasticsearch:
     image: docker.elastic.co/elasticsearch/elasticsearch:5.5.1
     environment:
@@ -59,9 +47,13 @@
     ports:
        - 9200:9200
        - 9300:9300
-    labels:
+#    labels:
       #io.rancher.sidekicks: elasticsearch-data
-      io.rancher.scheduler.global: true
+
+  opencpu:
+    image: registry.webhosting.rug.nl/molgenis/molgenis-opencpu:5.2.0
+    ports:
+      - 8004:8004
 
   postgres-data:
     image: busybox
@@ -81,5 +73,7 @@
 #    image: busybox
 #    labels:
 #      io.rancher.container.start_once: true
+#      io.rancher.scheduler.affinity:host_label: type=molgenis
+#      io.rancher.scheduler.affinity:container_label: io.rancher.stack.name=molgenis
 #    volumes:
 #      - /usr/share/elasticsearch/data

templates/molgenis/4/rancher-compose.yml

@@ -1,6 +1,6 @@
 .catalog:
   name: molgenis
-  version: v7.0.0
+  version: v5.2.0
   description: Molgenis
   minimum_rancher_version: v1.6.3
   questions:
@@ -25,4 +25,4 @@
     unhealthy_threshold: 3
     request_line: 'GET / HTTP/1.0'
     healthy_threshold: 2
-    response_timeout: 5000
+    response_timeout: 5000

templates/molgenis/5/README.md

@@ -0,0 +1,16 @@
+# MOLGENIS
+Flexible software for scientific data
+
+## Rancher configuration
+This template creates a MOLGENIS stack on top of Rancher. It creates 3 docker services:
+
+- MOLGENIS
+- Postgress
+- ElasticSearch
+
+## Usage
+- Select MOLGENIS from catalog
+- The stack-name must not be altered (this is hardcoded in de docker-compose file) 
+- Click *Launch*
+
+MOLGENIS can now be accessed over the Rancher network.

templates/molgenis/5/docker-compose.yml

@@ -0,0 +1,78 @@
+  molgenis:
+    image: registry.webhosting.rug.nl/molgenis/molgenis:6.0.0
+    ports:
+      - 8080
+    links:
+      - postgres
+      - elasticsearch
+    volumes_from:
+      - molgenis-data
+    labels:
+      io.rancher.sidekicks: molgenis-data
+      io.rancher.container.pull_image: always
+      io.rancher.scheduler.global: true
+      traefik.frontend.rule: Host:${DOMAINS}
+      traefik.backend: ${TRAEFIK_BACKEND}
+      traefik.enable: true
+      traefik.port: 8080
+
+  postgres:
+    image: postgres:9.6-alpine
+    environment:
+      - POSTGRES_USER=molgenis
+      - POSTGRES_PASSWORD=molgenis
+      - POSTGRES_DB=molgenis
+      - PGDATA=/var/lib/postgresql/data/pgdata
+    volumes_from:
+      - postgres-data
+    ports:
+      - 5432
+    labels:
+      io.rancher.sidekicks: postgres-data
+      io.rancher.scheduler.global: true
+
+  elasticsearch:
+    image: docker.elastic.co/elasticsearch/elasticsearch:5.5.1
+    environment:
+      - "cluster.name=molgenis"
+      - "bootstrap.memory_lock=true"
+      - "ES_JAVA_OPTS=-Xms1g -Xmx1g"
+      - "xpack.security.enabled=false"
+    ulimits:
+      memlock:
+        soft: -1
+        hard: -1
+#    volumes_from:
+#      - elasticsearch-data
+    ports:
+       - 9200:9200
+       - 9300:9300
+    labels:
+      #io.rancher.sidekicks: elasticsearch-data
+      io.rancher.scheduler.global: true
+
+  opencpu:
+    image: registry.webhosting.rug.nl/molgenis/molgenis-opencpu:6.0.0
+    ports:
+      - 8004:8004
+
+  postgres-data:
+    image: busybox
+    labels:
+      io.rancher.container.start_once: true
+    volumes:
+      - /var/lib/postgresql/data/pgdata
+
+  molgenis-data:
+    image: busybox
+    labels:
+      io.rancher.container.start_once: true
+    volumes:
+      - /opt/molgenis
+
+#  elasticsearch-data:
+#    image: busybox
+#    labels:
+#      io.rancher.container.start_once: true
+#    volumes:
+#      - /usr/share/elasticsearch/data

templates/molgenis/5/rancher-compose.yml

@@ -0,0 +1,28 @@
+.catalog:
+  name: molgenis
+  version: v6.0.0
+  description: Molgenis
+  minimum_rancher_version: v1.6.3
+  questions:
+    - variable: "DOMAINS"
+      description: "Domain you want to use (comma seperated)"
+      label: "Domains:"
+      required: true
+      default: "test.molgenis.org,test.dcktest.gcc.rug.nl"
+      type: "string"
+    - variable: "TRAEFIK_BACKEND"
+      description: "Name of the server when added to loadbalancer"
+      label: "Backend:"
+      required: true
+      default: "test.molgenis.org"
+      type: "string"
+
+  start_on_create: true
+  scale: 1
+  health_check:
+    port: 8080
+    interval: 5000
+    unhealthy_threshold: 3
+    request_line: 'GET / HTTP/1.0'
+    healthy_threshold: 2
+    response_timeout: 5000

templates/molgenis/6/README.md

@@ -0,0 +1,16 @@
+# MOLGENIS
+Flexible software for scientific data
+
+## Rancher configuration
+This template creates a MOLGENIS stack on top of Rancher. It creates 3 docker services:
+
+- MOLGENIS
+- Postgress
+- ElasticSearch
+
+## Usage
+- Select MOLGENIS from catalog
+- The stack-name must not be altered (this is hardcoded in de docker-compose file) 
+- Click *Launch*
+
+MOLGENIS can now be accessed over the Rancher network.

templates/molgenis/6/docker-compose.yml

@@ -0,0 +1,86 @@
+  molgenis:
+    image: registry.webhosting.rug.nl/molgenis/molgenis:7.0.0-SNAPSHOT
+    ports:
+      - 8080
+    links:
+      - postgres
+      - elasticsearch
+    volumes_from:
+      - molgenis-data
+    environment:
+      - "db_uri=jdbc:postgresql://postgres/molgenis?reWriteBatchedInserts=true&autosave=CONSERVATIVE"
+      - "db_driver=org.postgresql.Driver"
+      - "db_user=molgenis"
+      - "db_password=molgenis"
+      - "admin.password=admin"
+      - "elasticsearch.cluster.name=molgenis"
+      - "elasticsearch.transport.addresses=elasticsearch:9300"
+    labels:
+      io.rancher.sidekicks: molgenis-data
+      io.rancher.container.pull_image: always
+      io.rancher.scheduler.global: true
+      traefik.frontend.rule: Host:${DOMAINS}
+      traefik.backend: ${TRAEFIK_BACKEND}
+      traefik.enable: true
+      traefik.port: 8080
+
+  postgres:
+    image: postgres:9.6-alpine
+    environment:
+      - POSTGRES_USER=molgenis
+      - POSTGRES_PASSWORD=molgenis
+      - POSTGRES_DB=molgenis
+      - PGDATA=/var/lib/postgresql/data/pgdata
+    volumes_from:
+      - postgres-data
+    ports:
+      - 5432
+    labels:
+      io.rancher.sidekicks: postgres-data
+      io.rancher.scheduler.global: true
+
+  opencpu:
+    image: registry.webhosting.rug.nl/molgenis/molgenis-opencpu:7.0.0-SNAPSHOT
+    ports:
+      - 8004:8004
+
+  elasticsearch:
+    image: docker.elastic.co/elasticsearch/elasticsearch:5.5.1
+    environment:
+      - "cluster.name=molgenis"
+      - "bootstrap.memory_lock=true"
+      - "ES_JAVA_OPTS=-Xms1g -Xmx1g"
+      - "xpack.security.enabled=false"
+    ulimits:
+      memlock:
+        soft: -1
+        hard: -1
+#    volumes_from:
+#      - elasticsearch-data
+    ports:
+       - 9200:9200
+       - 9300:9300
+    labels:
+      #io.rancher.sidekicks: elasticsearch-data
+      io.rancher.scheduler.global: true
+
+  postgres-data:
+    image: busybox
+    labels:
+      io.rancher.container.start_once: true
+    volumes:
+      - /var/lib/postgresql/data/pgdata
+
+  molgenis-data:
+    image: busybox
+    labels:
+      io.rancher.container.start_once: true
+    volumes:
+      - /opt/molgenis
+
+#  elasticsearch-data:
+#    image: busybox
+#    labels:
+#      io.rancher.container.start_once: true
+#    volumes:
+#      - /usr/share/elasticsearch/data

templates/molgenis/6/rancher-compose.yml

@@ -0,0 +1,28 @@
+.catalog:
+  name: molgenis
+  version: v7.0.0
+  description: Molgenis
+  minimum_rancher_version: v1.6.3
+  questions:
+    - variable: "DOMAINS"
+      description: "Domain you want to use (comma seperated)"
+      label: "Domains:"
+      required: true
+      default: "test.molgenis.org,test.dcktest.gcc.rug.nl"
+      type: "string"
+    - variable: "TRAEFIK_BACKEND"
+      description: "Name of the server when added to loadbalancer"
+      label: "Backend:"
+      required: true
+      default: "test.molgenis.org"
+      type: "string"
+
+  start_on_create: true
+  scale: 1
+  health_check:
+    port: 8080
+    interval: 5000
+    unhealthy_threshold: 3
+    request_line: 'GET / HTTP/1.0'
+    healthy_threshold: 2
+    response_timeout: 5000