version: '2'

services:
  molgenis:
    image: registry.molgenis.org/molgenis/molgenis:latest
    ports:
      - 8080
    links:
      - postgres
      - elasticsearch
    volumes:
      - molgenis-data:/opt/molgenis
    environment:
      - "db_uri=jdbc:postgresql://postgres/${DB_SCHEME}?reWriteBatchedInserts=true&autosave=CONSERVATIVE"
      - "db_driver=org.postgresql.Driver"
      - "db_user=${DB_USERNAME}"
      - "db_password=${DB_PASSWORD}"
      - "molgenis.home=/opt/molgenis"
      - "admin.password=${MOLGENIS_ADMIN_PASSWORD}"
      - "opencpu.uri.port=8004"
      - "elasticsearch.cluster.name=${ELASTIC_CLUSTER}"
      - "elasticsearch.transport.addresses=elasticsearch:9300"
      - "JAVA_OPTS=-Xmx${JVM_MEM_POOL} -Xms${JVM_MEM_POOL} -XX:+UseConcMarkSweepGC -XX:+CMSClassUnloadingEnabled"
    labels:
      io.rancher.container.pull_image: always
      traefik.frontend.rule: Host:${DOMAINS}
      traefik.backend: ${TRAEFIK_BACKEND}
      traefik.enable: true
      traefik.port: 8080

  postgres:
    image: postgres:9.6-alpine
    environment:
      - POSTGRES_USER=${DB_USERNAME}
      - POSTGRES_PASSWORD=${DB_PASSWORD}
      - POSTGRES_DB=${DB_SCHEME}
      - PGDATA=/var/lib/postgresql/data/pgdata
    volumes:
      - postgres-data
    ports:
      - 5432
    healthcheck:
      test: ["CMD", "curl", "sS", "http://localhost:8080"]
      interval: 5s
      timeout: 10s
      retries: 5

  opencpu:
    image: registry.molgenis.org/molgenis/molgenis-opencpu:latest
    ports:
      - 8004
    healthcheck:
      test: ["CMD", "curl", "sS", "http://localhost:8084"]
      interval: 5s
      timeout: 10s
      retries: 5

  elasticsearch:
    image: docker.elastic.co/elasticsearch/elasticsearch:5.5.1
    environment:
      - "cluster.name=${ELASTIC_CLUSTER}"
      - "bootstrap.memory_lock=true"
      - "ES_JAVA_OPTS=-Xms1g -Xmx1g"
      - "xpack.security.enabled=false"
    ulimits:
      memlock:
        soft: -1
        hard: -1
    ports:
       - 9200
       - 9300
    volumes:
       - elastic-data

volumes:
  postgres-data:
    driver: local
  molgenis-data:
    driver: local
  elastic-data:
    driver: local