73 lines
1.9 KiB
YAML
73 lines
1.9 KiB
YAML
version: '2'
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services:
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molgenis:
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image: registry.webhosting.rug.nl/molgenis/molgenis:latest
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ports:
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- 8080
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links:
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- postgres
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- elasticsearch
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volumes:
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- molgenis-data:/opt/molgenis
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environment:
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- "db_uri=jdbc:postgresql://postgres/${DB_SCHEME}?reWriteBatchedInserts=true&autosave=CONSERVATIVE"
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- "db_driver=org.postgresql.Driver"
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- "db_user=${DB_USERNAME}"
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- "db_password=${DB_PASSWORD}"
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- "molgenis.home=/opt/molgenis"
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- "admin.password=${MOLGENIS_ADMIN_PASSWORD}"
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- "opencpu.uri.port=8004"
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- "elasticsearch.cluster.name=${ELASTIC_CLUSTER}"
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- "elasticsearch.transport.addresses=elasticsearch:9300"
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- "JAVA_OPTS=-Xmx${JVM_MEM_POOL} -Xms${JVM_MEM_POOL} -XX:+UseConcMarkSweepGC -XX:+CMSClassUnloadingEnabled"
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labels:
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io.rancher.container.pull_image: always
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traefik.frontend.rule: Host:${DOMAINS}
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traefik.backend: ${TRAEFIK_BACKEND}
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traefik.enable: true
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traefik.port: 8080
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postgres:
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image: postgres:9.6-alpine
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environment:
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- POSTGRES_USER=${DB_USERNAME}
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- POSTGRES_PASSWORD=${DB_PASSWORD}
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- POSTGRES_DB=${DB_SCHEME}
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- PGDATA=/var/lib/postgresql/data/pgdata
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volumes:
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- postgres-data
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ports:
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- 5432
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opencpu:
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image: registry.webhosting.rug.nl/molgenis/molgenis-opencpu:latest
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ports:
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- 8004
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elasticsearch:
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image: docker.elastic.co/elasticsearch/elasticsearch:5.5.1
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environment:
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- "cluster.name=${ELASTIC_CLUSTER}"
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- "bootstrap.memory_lock=true"
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- "ES_JAVA_OPTS=-Xms1g -Xmx1g"
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- "xpack.security.enabled=false"
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ulimits:
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memlock:
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soft: -1
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hard: -1
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ports:
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- 9200
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- 9300
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volumes:
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- elastic-data
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volumes:
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postgres-data:
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driver: local
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molgenis-data:
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driver: local
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elastic-data:
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driver: local
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