Made snippet input- and output files more harmonised.

2021-02-22 13:18:18 +01:00
parent a2bc313515
commit f93596dd87
5 changed files with 57 additions and 36 deletions
--- a/rnaseq/step4_multiqc/snippet.sh
+++ b/rnaseq/step4_multiqc/snippet.sh
@ -1,5 +1,5 @@
 #!/bin/bash
 module load multiqc

-# assuming you have all your fastQC result files in the ./fastQCresults folder
-multiqc ./fastQCresults
+PROJECT_DIRECTORY="/groups/umcg-griac/tmp01/rawdata/$(whoami)/rnaseq"
+multiqc "${PROJECT_DIRECTORY}"