32 lines
1.3 KiB
Python
Executable File
32 lines
1.3 KiB
Python
Executable File
from glob import glob
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from os.path import normpath, basename
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import SimpleITK as sitk
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def get_paths(main_dir):
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all_niftis = glob(main_dir, recursive=True)
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dwis_b800 = [i for i in all_niftis if ("diff" in i.lower() or "dwi" in i.lower()) and ("b-800" in i.lower() or "b800" in i.lower())]
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dwis_b400 = [i for i in all_niftis if ("diff" in i.lower() or "dwi" in i.lower()) and ("b-400" in i.lower() or "b400" in i.lower())]
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return dwis_b800, dwis_b400
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pat_numbers = ['pat0132','pat0091','pat0352','pat0844','pat1006','pat0406','pat0128','pat0153','pat0062','pat0758','pat0932','pat0248','pat0129','pat0429','pat0181','pat0063','pat0674','pat0176','pat0366','pat0082']
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load_path = '../../datasets/radboud_new/{pat_number}/2016/**/*.nii.gz'
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for idx, pat_number in enumerate(pat_numbers):
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dwis_b800,dwis_b400 = get_paths(f'../../datasets/radboud_new/{pat_number}/2016/**/*.nii.gz')
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# load
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dwi_b800 = sitk.ReadImage(dwis_b800, sitk.sitkFloat32)
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dwi_b400 = sitk.ReadImage(dwis_b400, sitk.sitkFloat32)
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# write
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output_path_b800 = f'../temp/check_by_derya/{idx}_{pat_number}_b800.nii.gz'
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output_path_b400 = f'../temp/check_by_derya/{idx}_{pat_number}_b400.nii.gz'
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sitk.WriteImage(dwi_b800, output_path_b800)
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sitk.WriteImage(dwi_b400, output_path_b400)
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