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This commit is contained in:
Jos van Nijnatten 2021-02-15 17:03:34 +01:00
parent 51abdcdb26
commit 6cf40804c4
1 changed files with 5 additions and 0 deletions
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5
rnaseq/step2_trim/snippet.sh
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@ -6,6 +6,11 @@
module load Trimmomatic module load Trimmomatic
# Adapters can be found at
# https://github.com/timflutre/trimmomatic/tree/master/adapters
# But should be verified with FastQC, or in another way.
# (Example) Paired end # (Example) Paired end
java -jar $EBROOTTRIMMOMATIC/trimmomatic.jar PE \ java -jar $EBROOTTRIMMOMATIC/trimmomatic.jar PE \
-phred33 \ -phred33 \